Title: Biological Sequences Retrieval and Analysis
Description: Exploratory data analysis and data visualization
for biological sequence (DNA and protein) data. Includes also
utilities for sequence data management under the ACNUC system.
Author: Delphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb]
Maintainer: Simon Penel <simon.penel@univ-lyon1.fr>
Diff between seqinr versions 3.3-0 dated 2016-07-19 and 3.3-1 dated 2016-09-06
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- R/read.alignment.R | 3 ++- src/alignment.c | 29 ++++++++++++++++++++--------- src/getzlibsock.c | 5 ++++- 5 files changed, 36 insertions(+), 21 deletions(-)
More information about NetworkComparisonTest at CRAN
Permanent link
Title: Unit Root and Cointegration Tests for Time Series Data
Description: Unit root and cointegration tests encountered in applied
econometric analysis are implemented.
Author: Bernhard Pfaff [aut, cre],
Eric Zivot [ctb],
Matthieu Stigler [ctb]
Maintainer: Bernhard Pfaff <bernhard@pfaffikus.de>
Diff between urca versions 1.2-9 dated 2016-01-11 and 1.3-0 dated 2016-09-06
urca-1.2-9/urca/inst/License |only urca-1.2-9/urca/inst/MacKinnonLicense.txt |only urca-1.3-0/urca/DESCRIPTION | 13 +---- urca-1.3-0/urca/MD5 | 38 +++++++-------- urca-1.3-0/urca/data/Raotbl1.rda |binary urca-1.3-0/urca/data/Raotbl2.rda |binary urca-1.3-0/urca/data/Raotbl3.rda |binary urca-1.3-0/urca/data/Raotbl4.rda |binary urca-1.3-0/urca/data/Raotbl5.rda |binary urca-1.3-0/urca/data/Raotbl6.rda |binary urca-1.3-0/urca/data/Raotbl7.rda |binary urca-1.3-0/urca/data/UKconinc.rda |binary urca-1.3-0/urca/data/UKconsumption.rda |binary urca-1.3-0/urca/data/UKpppuip.rda |binary urca-1.3-0/urca/data/denmark.rda |binary urca-1.3-0/urca/data/ecb.rda |binary urca-1.3-0/urca/data/finland.rda |binary urca-1.3-0/urca/data/npext.rda |binary urca-1.3-0/urca/data/nporg.rda |binary urca-1.3-0/urca/inst/Licenses |only urca-1.3-0/urca/src/UnitRootMacKinnon.f | 76 +++++++++++++++--------------- 21 files changed, 64 insertions(+), 63 deletions(-)
Title: Tools for Blind Source Separation for Time Series
Description: Different estimates are provided to solve the blind source separation problem for time series with stochastic volatility.
Author: Markus Matilainen, Jari Miettinen, Klaus Nordhausen, Hannu Oja, Sara Taskinen
Maintainer: Markus Matilainen <markus.matilainen@utu.fi>
Diff between tsBSS versions 0.1 dated 2015-12-04 and 0.2 dated 2016-09-06
DESCRIPTION | 8 +++--- MD5 | 21 +++++++++------- NAMESPACE | 4 ++- R/FixNA.R |only R/TIKlcwrap.R |only R/TIKwrap.R | 4 +-- R/vSOBI.R | 6 +++- inst/ChangeLog | 5 +++ man/FixNA.Rd |only man/tsBSS-package.Rd | 10 +++---- man/vSOBI.Rd | 22 +++++++++-------- src/tsBSS.cpp | 64 ++++++++++++++++++++++++++++++++++++++++++++++++++- src/tsBSS.h | 3 +- 13 files changed, 111 insertions(+), 36 deletions(-)
Title: Hidden Factor Graph Models
Description: Hidden Factor graph models generalise Hidden Markov Models to tree structured data. The distinctive feature of 'treeHFM' is that it learns a transition matrix for first order (sequential) and for second order (splitting) events. It can be applied to all discrete and continuous data that is structured as a binary tree. In the case of continuous observations, 'treeHFM' has Gaussian distributions as emissions.
Author: Henrik Failmezger, Achim Tresch
Maintainer: Henrik Failmezger <Henrik.Failmezger@googlemail.com>
Diff between treeHFM versions 1.0.0.1 dated 2016-07-08 and 1.0.2 dated 2016-09-06
DESCRIPTION | 6 - MD5 | 22 ++-- src/BaumWelch.cpp | 126 ++++++++++++------------ src/EmissionFunction.cpp | 2 src/FactorGraph.cpp | 70 ++++++------- src/Makevars | 2 src/MaxSum.cpp | 206 ++++++++++++++++++++-------------------- src/MemoryAllocation.cpp | 16 +-- src/ParamContainerEmissions.cpp | 8 - src/helpFunctions.cpp | 28 ++--- src/matUtils.cpp | 16 +-- src/matUtils.h | 5 12 files changed, 254 insertions(+), 253 deletions(-)
Title: Wrapper Functions for FSL ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')
Description: Wrapper functions that interface with 'FSL' (http://
fsl.fmrib.ox.ac.uk/fsl/fslwiki/), a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with 'FSL'
completely in R, where you pass R objects of class 'nifti', implemented by
package 'oro.nifti', and the function executes an 'FSL' command and returns an R
object of class 'nifti' if desired.
Author: John Muschelli <muschellij2@gmail.com>
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between fslr versions 1.6.4.0 dated 2016-05-25 and 1.9.2.1 dated 2016-09-06
DESCRIPTION | 33 ++---- MD5 | 83 ++++++++++----- NAMESPACE | 30 +++++ R/check_mask.R |only R/check_outfile.R | 2 R/checknii.R | 8 + R/checkniigz.R |only R/download_fsl.R |only R/dtifit.R |only R/eddy_correct.R |only R/fslhd.R | 49 +++++---- R/fslsplit.R |only R/mask_img.R | 10 - R/mcflirt.R | 2 R/mni_fname.R | 6 - R/ortho2.R | 246 ++++++++++++++++++++++++++++++++-------------- R/ortho_diff.R | 23 ++-- R/overlay2.R | 6 - R/parse_img_ext.R |only R/probtrackx.R |only R/quantile_img.R |only R/remake_img.R |only R/rescale_img.R | 66 +++++++----- R/run_first_all.R |only R/same_dims.R |only R/xfibres.R |only R/zlimmer.R | 15 +- build/vignette.rds |binary inst/doc/dti_data.R |only inst/doc/dti_data.Rmd |only inst/doc/dti_data.html |only inst/doc/fslr.Rmd | 15 ++ inst/doc/fslr.html | 201 +++++++------------------------------ man/check_mask.Rd |only man/check_mask_fail.Rd |only man/check_outfile.Rd | 2 man/checknii-methods.Rd | 3 man/checkniigz-methods.Rd |only man/download_fsl.Rd |only man/dtifit.Rd |only man/eddy_correct.Rd |only man/fsldir.Rd | 2 man/fslsplit.Rd |only man/fslsplit.help.Rd |only man/get.fsl.Rd | 9 + man/have.fsl.Rd | 5 man/mni_fname.Rd | 6 - man/multi_overlay.Rd | 6 - man/ortho2.Rd | 20 +++ man/parse_img_ext.Rd |only man/probtrackx.Rd |only man/quantile_img.Rd |only man/remake_img.Rd |only man/run_first_all.Rd |only man/run_first_all.help.Rd |only man/same_dims.Rd |only man/xfibres.Rd |only vignettes/dti_data.Rmd |only vignettes/fslr.Rmd | 15 ++ 59 files changed, 493 insertions(+), 370 deletions(-)
Title: Compares EI, Goodman, RxC Estimates
Description: Compares estimates from three ecological inferences routines, based on King et. al.'s approach.
Author: Loren Collingwood
Maintainer: Loren Collingwood <loren.collingwood@ucr.edu>
Diff between eiCompare versions 1.6 dated 2016-01-06 and 1.7 dated 2016-09-06
DESCRIPTION | 14 +-- MD5 | 9 +- NAMESPACE | 7 + R/plot.ei_compare.R | 148 ++++++++++++++++++----------------------- inst/doc/collingwood_et_al.pdf |only man/plot.ei_compare.Rd | 6 - 6 files changed, 86 insertions(+), 98 deletions(-)
Title: Import 'Stata' Data Files
Description: Function to read and write the 'Stata' file format.
Author: Jan Marvin Garbuszus [aut],
Sebastian Jeworutzki [aut, cre],
R Core Team [cph],
Magnus Thor Torfason [ctb]
Maintainer: Sebastian Jeworutzki <Sebastian.Jeworutzki@ruhr-uni-bochum.de>
Diff between readstata13 versions 0.8.3 dated 2016-09-02 and 0.8.4 dated 2016-09-06
readstata13-0.8.3/readstata13/inst/extdata/statacar.RData |only readstata13-0.8.3/readstata13/inst/extdata/statacar_strl.dta |only readstata13-0.8.4/readstata13/DESCRIPTION | 10 readstata13-0.8.4/readstata13/MD5 | 39 +-- readstata13-0.8.4/readstata13/NEWS | 5 readstata13-0.8.4/readstata13/R/RcppExports.R | 2 readstata13-0.8.4/readstata13/R/read.R | 30 +- readstata13-0.8.4/readstata13/R/save.R | 7 readstata13-0.8.4/readstata13/README.md | 8 readstata13-0.8.4/readstata13/inst/extdata/missings_lsf.dta |only readstata13-0.8.4/readstata13/inst/extdata/missings_msf.dta |only readstata13-0.8.4/readstata13/inst/extdata/statacar.do |only readstata13-0.8.4/readstata13/inst/extdata/statacar.dta |binary readstata13-0.8.4/readstata13/inst/include/readstata.h | 16 + readstata13-0.8.4/readstata13/inst/include/statadefines.h | 2 readstata13-0.8.4/readstata13/inst/include/swap_endian.h | 2 readstata13-0.8.4/readstata13/man/read.dta13.Rd | 8 readstata13-0.8.4/readstata13/src/RcppExports.cpp | 26 +- readstata13-0.8.4/readstata13/src/rcpp_pre13_savestata.cpp | 40 +-- readstata13-0.8.4/readstata13/src/rcpp_savestata.cpp | 138 +++++------ readstata13-0.8.4/readstata13/src/read_dta.cpp | 28 +- readstata13-0.8.4/readstata13/tests/testthat/test_read.R | 40 ++- readstata13-0.8.4/readstata13/tests/testthat/test_save.R | 39 ++- 23 files changed, 256 insertions(+), 184 deletions(-)
Title: Sparse Linear Algebra
Description: Some basic linear algebra functionality for sparse matrices is
provided: including Cholesky decomposition and backsolving as well as
standard R subsetting and Kronecker products.
Author: Roger Koenker <rkoenker@uiuc.edu> and Pin Ng <Pin.Ng@NAU.EDU>
Maintainer: Roger Koenker <rkoenker@uiuc.edu>
Diff between SparseM versions 1.7 dated 2015-08-15 and 1.72 dated 2016-09-06
DESCRIPTION | 6 ++-- MD5 | 13 ++++++---- build |only inst/ChangeLog | 4 +++ inst/doc/SparseM.R |only inst/doc/SparseM.Rnw |only inst/doc/SparseM.pdf |binary src/cholesky.f | 40 +++++++++++++++---------------- src/sparskit.f | 64 +++++++++++++++++++++++++-------------------------- 9 files changed, 67 insertions(+), 60 deletions(-)
Title: Trellis Graphics for R
Description: A powerful and elegant high-level data visualization
system inspired by Trellis graphics, with an emphasis on
multivariate data. Lattice is sufficient for typical graphics needs,
and is also flexible enough to handle most nonstandard requirements.
See ?Lattice for an introduction.
Author: Deepayan Sarkar <deepayan.sarkar@r-project.org>
Maintainer: Deepayan Sarkar <deepayan.sarkar@r-project.org>
Diff between lattice versions 0.20-33 dated 2015-07-14 and 0.20-34 dated 2016-09-06
DESCRIPTION | 8 +++---- MD5 | 14 ++++++------- R/bwplot.R | 42 +++++++++++++-------------------------- R/miscellaneous.R | 30 ++++++--------------------- R/splom.R | 57 ++++++++++++++++++++++++++--------------------------- man/Lattice.Rd | 2 - man/panel.pairs.Rd | 3 +- po/R-lattice.pot | 2 - 8 files changed, 66 insertions(+), 92 deletions(-)
Title: R Binder for the Yhat API
Description: Deploy, maintain, and invoke models via the Yhat
REST API.
Author: Greg Lamp <greg@yhathq.com>, Stevie Smith <dev@yhathq.com>, Ross Kippenbrock <ross@yhathq.com>
Maintainer: Greg Lamp <greg@yhathq.com>
Diff between yhatr versions 0.13.10 dated 2016-02-12 and 0.15.0 dated 2016-09-06
DESCRIPTION | 14 +- MD5 | 20 +-- NAMESPACE | 5 R/yhatR.R | 272 ++++++++++++++++++++++++++++++++++++++++++----- man/add.dependency.Rd | 3 man/capture.src.Rd | 4 man/yhat.batchDeploy.Rd |only man/yhat.library.Rd | 2 man/yhat.ls.Rd | 7 - man/yhat.post.Rd | 6 - man/yhat.predict_bulk.Rd |only man/yhat.predict_raw.Rd | 4 12 files changed, 288 insertions(+), 49 deletions(-)
Title: Useful Tools for Structural Equation Modeling
Description: Provides useful tools for structural equation modeling packages.
Author: Sunthud Pornprasertmanit [aut, cre],
Patrick Miller [aut],
Alexander Schoemann [aut],
Yves Rosseel [aut],
Corbin Quick [ctb],
Mauricio Garnier-Villarreal [ctb],
James Selig [ctb],
Aaron Boulton [ctb],
Kristopher Preacher [ctb],
Donna Coffman [ctb],
Mijke Rhemtulla [ctb],
Alexander Robitzsch [ctb],
Craig Enders [ctb],
Ruber Arslan [ctb],
Bell Clinton [ctb],
Pavel Panko [ctb],
Edgar Merkle [ctb],
Terry Jorgensen [ctb],
Steven Chesnut [ctb],
Jarrett Byrnes [ctb],
Jason Rights [ctb],
Ylenio Longo [ctb]
Maintainer: Sunthud Pornprasertmanit <psunthud@gmail.com>
Diff between semTools versions 0.4-12 dated 2016-06-13 and 0.4-13 dated 2016-09-06
semTools-0.4-12/semTools/R/lavSpatialCorrect.R |only semTools-0.4-12/semTools/data/boreal.rda |only semTools-0.4-12/semTools/man/boreal.Rd |only semTools-0.4-12/semTools/man/spatialCorrect.Rd |only semTools-0.4-13/semTools/DESCRIPTION | 6 semTools-0.4-13/semTools/MD5 | 57 ++--- semTools-0.4-13/semTools/NAMESPACE | 6 semTools-0.4-13/semTools/R/NET.R | 68 ++---- semTools-0.4-13/semTools/R/PAVranking.R | 57 ----- semTools-0.4-13/semTools/R/TSML.R |only semTools-0.4-13/semTools/R/auxiliary.R | 28 +- semTools-0.4-13/semTools/R/ci.reliability.R | 38 +-- semTools-0.4-13/semTools/R/clipboard.R | 2 semTools-0.4-13/semTools/R/efa.R | 202 ++++++++++++++---- semTools-0.4-13/semTools/R/fitIndices.R | 22 - semTools-0.4-13/semTools/R/impliedStat.R | 16 - semTools-0.4-13/semTools/R/measurementInvariance.R | 2 semTools-0.4-13/semTools/R/measurementInvarianceCat.R | 2 semTools-0.4-13/semTools/R/miPowerFit.R | 22 - semTools-0.4-13/semTools/R/missingBootstrap.R | 28 +- semTools-0.4-13/semTools/R/partialInvariance.R | 10 semTools-0.4-13/semTools/R/partialInvarianceCat.R | 25 +- semTools-0.4-13/semTools/R/permuteMeasEq.R | 74 +++--- semTools-0.4-13/semTools/R/poolMAlloc.R | 55 ---- semTools-0.4-13/semTools/R/probeInteraction.R | 20 - semTools-0.4-13/semTools/R/reliability.R | 125 +++++++---- semTools-0.4-13/semTools/R/runMI.R | 83 +++---- semTools-0.4-13/semTools/R/singleParamTest.R | 6 semTools-0.4-13/semTools/man/poolMAlloc.Rd | 2 semTools-0.4-13/semTools/man/rotate.Rd | 2 semTools-0.4-13/semTools/man/runMI.Rd | 2 semTools-0.4-13/semTools/man/twostage-class.Rd |only semTools-0.4-13/semTools/man/twostage.Rd |only 33 files changed, 510 insertions(+), 450 deletions(-)
Title: Practical Numerical Math Functions
Description:
Functions from numerical analysis and linear algebra, numerical
optimization, differential equations, plus some special functions.
Uses Matlab function names where appropriate to simplify porting.
Author: Hans Werner Borchers
Maintainer: Hans W. Borchers <hwborchers@googlemail.com>
Diff between pracma versions 1.9.3 dated 2016-05-29 and 1.9.5 dated 2016-09-06
pracma-1.9.3/pracma/R/fplot.R |only pracma-1.9.3/pracma/R/rortho.R |only pracma-1.9.3/pracma/man/fplot.Rd |only pracma-1.9.3/pracma/man/rortho.Rd |only pracma-1.9.5/pracma/DESCRIPTION | 12 +++--- pracma-1.9.5/pracma/MD5 | 42 ++++++++++++------------ pracma-1.9.5/pracma/NEWS | 16 ++++++++- pracma-1.9.5/pracma/R/entropy.R | 4 +- pracma-1.9.5/pracma/R/ezplot.R | 52 +++++++++++++++++++++++++----- pracma-1.9.5/pracma/R/fprintf.R |only pracma-1.9.5/pracma/R/matlab.R | 4 +- pracma-1.9.5/pracma/R/randortho.R |only pracma-1.9.5/pracma/data/brown72.rda |binary pracma-1.9.5/pracma/data/nile.rda |binary pracma-1.9.5/pracma/data/titanium.rda |binary pracma-1.9.5/pracma/man/entropy.Rd | 10 ++--- pracma-1.9.5/pracma/man/ezcontour.Rd | 21 +++++++----- pracma-1.9.5/pracma/man/ezplot.Rd | 13 +++++-- pracma-1.9.5/pracma/man/fprintf.Rd |only pracma-1.9.5/pracma/man/gaussHermite.Rd | 4 -- pracma-1.9.5/pracma/man/gaussLaguerre.Rd | 4 -- pracma-1.9.5/pracma/man/nearest_spd.Rd | 2 - pracma-1.9.5/pracma/man/pracma-package.Rd | 4 +- pracma-1.9.5/pracma/man/procrustes.Rd | 2 - pracma-1.9.5/pracma/man/quadprog.Rd | 2 - pracma-1.9.5/pracma/man/randortho.Rd |only 26 files changed, 124 insertions(+), 68 deletions(-)
Title: Network Meta-Analysis Using Bayesian Methods
Description: Network meta-analyses (mixed treatment comparisons) in the Bayesian
framework using JAGS. Includes methods to assess heterogeneity and
inconsistency, and a number of standard visualizations.
Author: Gert van Valkenhoef, Joel Kuiper
Maintainer: Gert van Valkenhoef <g.h.m.van.valkenhoef@rug.nl>
Diff between gemtc versions 0.8 dated 2016-03-01 and 0.8.1 dated 2016-09-06
DESCRIPTION | 33 +++++------ MD5 | 46 ++++++++------- NAMESPACE | 4 + NEWS | 20 ++++++ R/data.R | 4 - R/deviance.R | 104 +++++++++++++++++++++++++++++++++-- R/forest.R |only R/mtc.model.R | 4 + R/mtc.model.nodesplit.R | 4 + R/mtc.network.R | 33 ++++++++--- R/mtc.result.R | 1 R/nodesplit.R | 25 ++++++++ R/plotCovariateEffect.R | 23 +++++-- R/relative.effect.table.R | 2 data/atrialFibrillation.rdata |binary data/certolizumab.rdata |binary man/atrialFibrillation.Rd | 15 +++-- man/blobbogram.Rd | 7 ++ man/mtc.deviance.Rd |only man/mtc.network.Rd | 3 - man/mtc.run.Rd | 3 - man/parkinson.Rd | 4 - man/relative.effect.Rd | 2 tests/testthat/test-regress-models.R | 8 ++ tests/testthat/test-unit-nodesplit.R | 29 +++++++++ 25 files changed, 300 insertions(+), 74 deletions(-)
Title: Integrated Development Toolbox for Aquatic Chemical Model
Generation
Description: Toolbox for the experimental aquatic chemist, focused on
acidification and CO2 air-water exchange. It contains all elements to
model the pH, the related CO2 air-water exchange, and
aquatic acid-base chemistry for an arbitrary marine,
estuarine or freshwater system. It contains a suite of tools for
sensitivity analysis, visualisation, modelling of chemical batches,
and can be used to build dynamic models of aquatic systems.
As from version 1.0-4, it also contains functions to calculate
the buffer factors.
Author: Andreas F. Hofmann, Karline Soetaert, Filip J.R. Meysman,
Mathilde Hagens
Maintainer: Karline Soetaert <Karline.Soetaert@nioz.nl>
Diff between AquaEnv versions 1.0-3 dated 2012-08-08 and 1.0-4 dated 2016-09-06
DESCRIPTION | 50 +- MD5 | 114 +++-- NAMESPACE | 13 R/aquaenv_private_DSApHfunctions.R | 118 +++--- R/aquaenv_private_Kfunctions.R | 26 - R/aquaenv_private_auxilaryfunctions.R | 2 R/aquaenv_public_applications.R | 2 R/aquaenv_public_mainfunctions.R | 394 +++++++++++++++++++- build |only data/sample_dickson1981.rda |binary data/sample_dickson2007.rda |binary demo/DSAdynamicmodel.R | 1 demo/basicfeatures.R | 530 +++++++++++++-------------- demo/dynamicmodel.R | 1 demo/pHmodelling1_implicit_method.R | 2 demo/pHmodelling2_explicit_method.R | 2 demo/pHmodelling3_fractional_stoichiometry.R | 2 inst/doc/AquaEnv-ConstantsAndFormulae.pdf |binary inst/doc/AquaEnv-PrivateFunctions.pdf |binary inst/doc/AquaEnv.R |only inst/doc/AquaEnv.pdf |binary inst/doc/AquaEnv.rnw |only man/AquaEnv_package.Rd | 14 man/BufferFactors.Rd |only man/ConcRelCl.Rd | 2 man/DeltaPcoeffs.Rd | 2 man/K0_CO2.Rd | 2 man/K0_O2.Rd | 2 man/K_BOH3.Rd | 2 man/K_CO2.Rd | 8 man/K_H2PO4.Rd | 2 man/K_H2S.Rd | 2 man/K_H3PO4.Rd | 2 man/K_HCO3.Rd | 9 man/K_HF.Rd | 2 man/K_HPO4.Rd | 2 man/K_HSO4.Rd | 2 man/K_NH4.Rd | 2 man/K_SiOH4.Rd | 2 man/K_SiOOH3.Rd | 2 man/K_W.Rd | 2 man/Ksp_aragonite.Rd | 2 man/Ksp_calcite.Rd | 2 man/MeanMolecularMass.Rd | 2 man/PhysChemConst.Rd | 2 man/TAfit.Rd | 2 man/Technicals.Rd | 2 man/aquaenv.Rd | 15 man/as.data.frame.aquaenv.Rd | 2 man/c.aquaenv.Rd | 5 man/convert.Rd | 2 man/gauge_p.Rd | 2 man/length.aquaenv.Rd | 2 man/merge.aquaenv.Rd | 2 man/plot.aquaenv.Rd | 2 man/sample_dickson1981.Rd | 2 man/sample_dickson2007.Rd | 2 man/titration.Rd | 6 man/watdepth.Rd | 2 vignettes |only 60 files changed, 884 insertions(+), 490 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-12-22 0.2.0
2014-12-20 0.1.4
2014-08-06 0.1.3
2014-01-28 0.1.2
Title: Thermoluminescence Glow Curve Deconvolution
Description: Deconvolving thermoluminescence glow curves according to the general-order
empirical expression or the semi-analytical expression derived from the one trap-
one recombination (OTOR) model using a modified Levenberg-Marquardt algorithm.
It provides the possibility of setting constraints or fixing any of parameters.
It offers an interactive way to initialize parameters by clicking with a mouse
on a plot at positions where peak maxima should be located. The optimal estimate
is obtained by "trial-and-error". It also provides routines for simulating
first-order, second-order, and general-order glow peaks (curves).
Author: Jun Peng [aut, cre],
Jorge More [ctb],
Burton Garbow [ctb],
Kenneth Hillstrom [ctb],
John Burkardt [ctb],
Linda R. Petzold [ctb],
Alan C. Hindmarsh [ctb],
R. Woodrow Setzer [ctb],
Andrew Horchler [ctb]
Maintainer: Jun Peng <pengjun10@mails.ucas.ac.cn>
Diff between tgcd versions 1.9 dated 2016-05-23 and 2.0 dated 2016-09-06
DESCRIPTION | 20 +-- MD5 | 12 + inst |only man/simPeak.Rd | 7 - man/simqOTOR.Rd | 33 ++--- man/tgcd-package.Rd |only man/tgcd.Rd | 35 +++-- src/lsoda.f | 314 ++++++++++++++++++++++++++++++++++++++++------------ 8 files changed, 303 insertions(+), 118 deletions(-)
Title: Sample Size Calculations for Complex Surveys
Description: Computes the required sample size for estimation of totals, means
and proportions under complex sampling designs.
Author: Hugo Andres Gutierrez Rojas
Maintainer: Hugo Andres Gutierrez Rojas <hugogutierrez@usantotomas.edu.co>
Diff between samplesize4surveys versions 2.4.0.900 dated 2015-05-04 and 3.1.2.400 dated 2016-09-06
DESCRIPTION | 9 +-- MD5 | 96 +++++++++++++++++++---------------- NAMESPACE | 9 ++- R/b4S2.R |only R/b4ddm.R | 4 + R/b4ddp.R | 2 R/b4dm.R | 2 R/b4dp.R | 2 R/b4m.R | 2 R/b4p.R | 2 R/e4S2.R |only R/e4p.R | 2 R/ss2s4m.R | 10 +-- R/ss2s4p.R | 10 +-- R/ss4S2.R |only R/ss4S2H.R |only build/vignette.rds |binary inst/doc/Power-and-sample-size.Rmd | 2 inst/doc/Power-and-sample-size.html | 98 ++++++++++++++++++++---------------- man/DEFF.Rd | 12 ++-- man/ICC.Rd | 7 +- man/b4S2.Rd |only man/b4ddm.Rd | 10 +-- man/b4ddp.Rd | 6 +- man/b4dm.Rd | 6 +- man/b4dp.Rd | 4 - man/b4m.Rd | 4 - man/b4p.Rd | 4 - man/e4S2.Rd |only man/e4ddm.Rd | 10 +-- man/e4ddp.Rd | 4 - man/e4dm.Rd | 4 - man/e4dp.Rd | 4 - man/e4m.Rd | 4 - man/e4p.Rd | 4 - man/ss2s4m.Rd | 17 +++--- man/ss2s4p.Rd | 19 +++--- man/ss4S2.Rd |only man/ss4S2H.Rd |only man/ss4ddm.Rd | 18 +++--- man/ss4ddmH.Rd | 20 +++---- man/ss4ddp.Rd | 8 +- man/ss4ddpH.Rd | 6 +- man/ss4dm.Rd | 8 +- man/ss4dmH.Rd | 12 ++-- man/ss4dp.Rd | 4 - man/ss4dpH.Rd | 10 +-- man/ss4m.Rd | 4 - man/ss4mH.Rd | 14 ++--- man/ss4p.Rd | 4 - man/ss4pH.Rd | 14 ++--- man/ss4stm.Rd | 9 +-- vignettes/Power-and-sample-size.Rmd | 2 53 files changed, 270 insertions(+), 232 deletions(-)
More information about samplesize4surveys at CRAN
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Title: Fast and Simple Object Serialization to Protocol Buffers
Description: Optimized C++ implementations for reading and writing protocol-buffers.
Currently supports 'rexp.proto' for serializing R objects and 'geobuf.proto' for
geojson data. This lightweight package is complementary to the much larger
'RProtoBuf' package which provides a full featured toolkit for working with
protocol-buffers in R.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between protolite versions 1.4 dated 2016-08-19 and 1.5 dated 2016-09-06
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS | 4 ++++ README.md | 4 ++-- cleanup | 8 +++++--- configure | 2 +- src/Makevars.win | 4 +++- src/geobuf.cpp | 2 +- src/ungeobuf.cpp | 8 ++++---- 9 files changed, 31 insertions(+), 23 deletions(-)
Title: Mathematical Morphology in Any Number of Dimensions
Description: Provides tools for performing mathematical morphology operations,
such as erosion and dilation, on data of arbitrary dimensionality. Can also
be used for finding connected components, resampling, filtering, smoothing
and other image processing-style operations.
Author: Jon Clayden
Maintainer: Jon Clayden <code@clayden.org>
Diff between mmand versions 1.4.0 dated 2016-09-05 and 1.4.1 dated 2016-09-06
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 6 ++++++ src/Resampler.h | 19 ++++++++++++++----- 4 files changed, 27 insertions(+), 12 deletions(-)
Title: Scoring Rules for Parametric and Simulated Distribution
Forecasts
Description: Dictionary-like reference for computing scoring rules in a wide
range of situations. Covers both parametric forecast distributions (such as
mixtures of Gaussians) and distributions generated via simulation.
Author: Alexander Jordan, Fabian Krueger, Sebastian Lerch
Maintainer: Fabian Krueger <Fabian.Krueger83@gmail.com>
Diff between scoringRules versions 0.9 dated 2016-07-05 and 0.9.1 dated 2016-09-06
DESCRIPTION | 13 +-- MD5 | 46 ++++++---- NAMESPACE | 26 ++++++ R/RcppExports.R | 52 ++++++++++++ R/header.R | 2 R/header_replication.R |only R/lsFunctions.R | 2 R/procs_casestudy.R |only R/procs_mc.R |only data/datalist | 1 data/gdp.rda |only inst/doc/gettingstarted.Rmd | 2 inst/doc/gettingstarted.html | 6 - man/Posrealline.Rd | 5 - man/Realline.Rd | 3 man/Variablesupport.Rd | 3 man/ar_ms.Rd |only man/gdp_mcmc.Rd | 27 ++++-- man/parametric.Rd | 9 -- man/plot.casestudy.Rd |only man/plot.mcstudy.Rd |only man/run_casestudy.Rd |only man/run_mcstudy.Rd |only man/sample.Rd | 10 -- src/Makevars |only src/Makevars.win |only src/RcppExports.cpp | 181 +++++++++++++++++++++++++++++++++++++++++++ src/mixn.cpp | 34 +++++++- src/procs_casestudy.cpp |only vignettes/gettingstarted.Rmd | 2 30 files changed, 367 insertions(+), 57 deletions(-)
Title: Embedding Interactive Charts Generated with ECharts Library into
Shiny Applications
Description: With this package, users can embed interactive charts to their Shiny applications. These charts will be generated by ECharts library developed by Baidu (http://echarts.baidu.com/). Current version support line chart, bar chart, pie chart, scatter plot, gauge, word cloud, radar chart, and heat map.
Author: Xiaodong Deng [aut, cre],
Hao Zhu [ctr],
Yiheng Li [ctr]
Maintainer: Xiaodong Deng <xd_deng@hotmail.com>
Diff between ECharts2Shiny versions 0.2.1 dated 2016-08-02 and 0.2.3 dated 2016-09-06
ECharts2Shiny-0.2.1/ECharts2Shiny/R/renderCharts.R |only ECharts2Shiny-0.2.3/ECharts2Shiny/DESCRIPTION | 12 ECharts2Shiny-0.2.3/ECharts2Shiny/MD5 | 36 - ECharts2Shiny-0.2.3/ECharts2Shiny/NEWS | 10 ECharts2Shiny-0.2.3/ECharts2Shiny/R/bar_chart.R |only ECharts2Shiny-0.2.3/ECharts2Shiny/R/gauge.R |only ECharts2Shiny-0.2.3/ECharts2Shiny/R/heat_map.R |only ECharts2Shiny-0.2.3/ECharts2Shiny/R/internal_functions.R |only ECharts2Shiny-0.2.3/ECharts2Shiny/R/line_chart.R |only ECharts2Shiny-0.2.3/ECharts2Shiny/R/pie_chart.R |only ECharts2Shiny-0.2.3/ECharts2Shiny/R/radar_chart.R |only ECharts2Shiny-0.2.3/ECharts2Shiny/R/scatter.R |only ECharts2Shiny-0.2.3/ECharts2Shiny/R/word_cloud.R |only ECharts2Shiny-0.2.3/ECharts2Shiny/man/deliverChart.Rd | 31 + ECharts2Shiny-0.2.3/ECharts2Shiny/man/loadEChartsLibrary.Rd | 32 + ECharts2Shiny-0.2.3/ECharts2Shiny/man/loadEChartsTheme.Rd | 34 + ECharts2Shiny-0.2.3/ECharts2Shiny/man/renderBarChart.Rd | 47 +- ECharts2Shiny-0.2.3/ECharts2Shiny/man/renderGauge.Rd | 129 +++-- ECharts2Shiny-0.2.3/ECharts2Shiny/man/renderHeatMap.Rd | 123 +++-- ECharts2Shiny-0.2.3/ECharts2Shiny/man/renderLineChart.Rd | 275 ++++++------ ECharts2Shiny-0.2.3/ECharts2Shiny/man/renderPieChart.Rd | 187 ++++---- ECharts2Shiny-0.2.3/ECharts2Shiny/man/renderRadarChart.Rd | 163 ++++--- ECharts2Shiny-0.2.3/ECharts2Shiny/man/renderScatter.Rd | 218 +++++---- ECharts2Shiny-0.2.3/ECharts2Shiny/man/renderWordcloud.Rd | 152 +++--- 24 files changed, 861 insertions(+), 588 deletions(-)
More information about InterpretMSSpectrum at CRAN
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Title: Impute Missing Values in a Predictive Context
Description: Compute missing values on a training data set and impute them on a new data set. Current available options are median/mode and random forest.
Author: Matthijs Meire, Michel Ballings, Dirk Van den Poel
Maintainer: Matthijs Meire <Matthijs.Meire@ugent.be>
Diff between imputeMissings versions 0.0.1 dated 2015-10-02 and 0.0.3 dated 2016-09-06
DESCRIPTION | 9 +-- MD5 | 12 ++-- R/compute.R | 141 +++++++++++++++++++++++++++++++---------------------- R/impute.R | 150 ++++++++++++++++++++++++++++++++++++--------------------- inst/NEWS | 9 ++- man/compute.Rd | 53 ++++++++++++++------ man/impute.Rd | 57 +++++++++++++++------ 7 files changed, 276 insertions(+), 155 deletions(-)
More information about imputeMissings at CRAN
Permanent link
Title: Hydrological Data Discovery Tools
Description: Facilitates discovery and handling of hydrological data, non-programmatic access to catalogues and databases.
Author: Claudia Vitolo [aut, cre]
Maintainer: Claudia Vitolo <cvitolodev@gmail.com>
Diff between hddtools versions 0.2.4 dated 2015-01-18 and 0.3.0 dated 2016-09-06
hddtools-0.2.4/hddtools/R/hddtools-package.r |only hddtools-0.2.4/hddtools/R/mopex.R |only hddtools-0.2.4/hddtools/inst/GRDC |only hddtools-0.2.4/hddtools/inst/KOTTEK_KG.tar.gz |only hddtools-0.2.4/hddtools/inst/KOTTEK_Legend.txt |only hddtools-0.2.4/hddtools/inst/PEEL_KG.tar.gz |only hddtools-0.2.4/hddtools/inst/PEEL_Legend.txt |only hddtools-0.2.4/hddtools/inst/test.txt |only hddtools-0.2.4/hddtools/inst/trmm.sh |only hddtools-0.2.4/hddtools/man/GRDCCatalogue.Rd |only hddtools-0.2.4/hddtools/man/GRDCMonthlyTS.Rd |only hddtools-0.2.4/hddtools/man/Hydrological-Data-Discovery-Tools.Rd |only hddtools-0.2.4/hddtools/man/mopexCatalogue.Rd |only hddtools-0.2.4/hddtools/man/mopexTS.Rd |only hddtools-0.3.0/hddtools/DESCRIPTION | 29 - hddtools-0.3.0/hddtools/MD5 | 78 ++ hddtools-0.3.0/hddtools/NAMESPACE | 53 +- hddtools-0.3.0/hddtools/R/Data60UK.R |only hddtools-0.3.0/hddtools/R/GRDC.R | 233 ++++---- hddtools-0.3.0/hddtools/R/HadDAILY.R |only hddtools-0.3.0/hddtools/R/KGClimateClass.R | 198 +++---- hddtools-0.3.0/hddtools/R/MOPEX.R |only hddtools-0.3.0/hddtools/R/SEPA.R |only hddtools-0.3.0/hddtools/R/TRMM.R | 265 +++++----- hddtools-0.3.0/hddtools/R/bboxSpatialPolygon.R |only hddtools-0.3.0/hddtools/R/getContent.R | 32 - hddtools-0.3.0/hddtools/R/hddtools-package.R |only hddtools-0.3.0/hddtools/README.md |only hddtools-0.3.0/hddtools/data |only hddtools-0.3.0/hddtools/inst/CITATION |only hddtools-0.3.0/hddtools/inst/extdata |only hddtools-0.3.0/hddtools/inst/paper |only hddtools-0.3.0/hddtools/man/HadDAILY.Rd |only hddtools-0.3.0/hddtools/man/KGClimateClass.Rd | 15 hddtools-0.3.0/hddtools/man/SEPAcatalogue.Rd |only hddtools-0.3.0/hddtools/man/TRMM.Rd | 45 + hddtools-0.3.0/hddtools/man/bboxSpatialPolygon.Rd |only hddtools-0.3.0/hddtools/man/catalogueData60UK.Rd |only hddtools-0.3.0/hddtools/man/catalogueGRDC.Rd |only hddtools-0.3.0/hddtools/man/catalogueMOPEX.Rd |only hddtools-0.3.0/hddtools/man/catalogueSEPA.Rd |only hddtools-0.3.0/hddtools/man/getContent.Rd | 12 hddtools-0.3.0/hddtools/man/hddtools.Rd |only hddtools-0.3.0/hddtools/man/tsData60UK.Rd |only hddtools-0.3.0/hddtools/man/tsGRDC.Rd |only hddtools-0.3.0/hddtools/man/tsMOPEX.Rd |only hddtools-0.3.0/hddtools/man/tsSEPA.Rd |only hddtools-0.3.0/hddtools/tests |only hddtools-0.3.0/hddtools/vignettes |only 49 files changed, 544 insertions(+), 416 deletions(-)
Title: Collection of Tools for Genomic Data Analysis
Description: A loose collection of tools for the analysis of expression and genotype data, currently with the main focus on (e)QTL and MDR analysis.
Author: Daniel Fischer
Maintainer: Daniel Fischer <daniel.fischer@luke.fi>
Diff between GenomicTools versions 0.1 dated 2016-08-17 and 0.2 dated 2016-09-06
GenomicTools-0.1/GenomicTools/vignettes/GenomicTools-Vignette.pdf |only GenomicTools-0.2/GenomicTools/DESCRIPTION | 12 GenomicTools-0.2/GenomicTools/MD5 | 46 +- GenomicTools-0.2/GenomicTools/NAMESPACE | 4 GenomicTools-0.2/GenomicTools/R/QTL.R | 5 GenomicTools-0.2/GenomicTools/R/eqtl.R | 15 GenomicTools-0.2/GenomicTools/R/eqtlDir.R | 1 GenomicTools-0.2/GenomicTools/R/getSNPlocations.R | 33 + GenomicTools-0.2/GenomicTools/R/importPED.R | 2 GenomicTools-0.2/GenomicTools/R/importVCF.R | 98 +++++ GenomicTools-0.2/GenomicTools/R/print.PedMap.R | 4 GenomicTools-0.2/GenomicTools/R/print.vcf.R |only GenomicTools-0.2/GenomicTools/build |only GenomicTools-0.2/GenomicTools/data/annotTrack.rda |binary GenomicTools-0.2/GenomicTools/data/geneEXP.rda |binary GenomicTools-0.2/GenomicTools/data/genotData.rda |binary GenomicTools-0.2/GenomicTools/data/mdrExample.rda |binary GenomicTools-0.2/GenomicTools/data/phenoData.rda |binary GenomicTools-0.2/GenomicTools/inst/ChangeLog | 6 GenomicTools-0.2/GenomicTools/inst/doc |only GenomicTools-0.2/GenomicTools/man/eQTL.Rd | 8 GenomicTools-0.2/GenomicTools/man/importVCF.Rd |only GenomicTools-0.2/GenomicTools/vignettes/GenomicTools-Vignette.Rmd | 167 +++++++++- GenomicTools-0.2/GenomicTools/vignettes/MDR.png |only GenomicTools-0.2/GenomicTools/vignettes/QTL1.png |only GenomicTools-0.2/GenomicTools/vignettes/QTL2.png |only GenomicTools-0.2/GenomicTools/vignettes/cisEQTL.png |only GenomicTools-0.2/GenomicTools/vignettes/transEQTL.png |only 28 files changed, 340 insertions(+), 61 deletions(-)
Title: Continuous-Time Movement Modeling
Description: Functions for identifying, fitting, and applying continuous-space, continuous-time stochastic movement models to animal tracking data.
Author: Chris H. Fleming and J. M. Calabrese
Maintainer: C. H. Fleming <flemingc@si.edu>
Diff between ctmm versions 0.3.2 dated 2016-05-13 and 0.3.3 dated 2016-09-06
DESCRIPTION | 10 MD5 | 77 +++---- NAMESPACE | 12 - NEWS | 22 +- R/ctmm.R | 132 +++++++++--- R/generic.R | 32 ++- R/kde.R | 491 ++++++++++++++++++++++++++++++++++-------------- R/krige.R | 152 ++++++++++---- R/likelihood.R | 237 ++++++++++++++--------- R/mean.R | 23 ++ R/overlap.R | 2 R/periodogram.R | 6 R/select.R | 4 R/telemetry.R | 91 +++++--- R/uere.R | 41 +--- R/variogram.R | 319 ++++++++++++++++++------------- README.md |only TODO | 56 +++-- build/vignette.rds |binary inst/doc/akde.R | 10 inst/doc/akde.Rmd | 20 + inst/doc/akde.html | 29 +- inst/doc/variogram.R | 18 - inst/doc/variogram.Rmd | 44 ++-- inst/doc/variogram.html | 66 +++--- man/akde.Rd | 8 man/akde.bandwidth.Rd | 7 man/as.telemetry.Rd | 4 man/ctmm-package.Rd | 13 - man/ctmm.fit.Rd | 5 man/gazelle.Rd | 2 man/mean.variogram.Rd | 9 man/occurrence.Rd | 6 man/overlap.Rd | 2 man/periodogram.Rd | 4 man/plot.telemetry.Rd | 2 man/simulate.ctmm.Rd | 34 ++- man/variogram.Rd | 2 vignettes/akde.Rmd | 20 + vignettes/variogram.Rmd | 44 ++-- 40 files changed, 1322 insertions(+), 734 deletions(-)
Title: Scalable Robust Estimators with High Breakdown Point
Description: Robust Location and Scatter Estimation and Robust
Multivariate Analysis with High Breakdown Point.
Author: Valentin Todorov <valentin.todorov@chello.at>
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between rrcov versions 1.3-11 dated 2016-02-15 and 1.4-3 dated 2016-09-06
rrcov-1.3-11/rrcov/tests/thubert.save |only rrcov-1.4-3/rrcov/ChangeLog | 27 +++++++ rrcov-1.4-3/rrcov/DESCRIPTION | 8 +- rrcov-1.4-3/rrcov/MD5 | 50 ++++++------- rrcov-1.4-3/rrcov/NAMESPACE | 2 rrcov-1.4-3/rrcov/R/AllClasses.R | 5 + rrcov-1.4-3/rrcov/R/Linda.R | 35 ++++++--- rrcov-1.4-3/rrcov/R/Pca.R | 78 ++++++++++++--------- rrcov-1.4-3/rrcov/R/PcaClassic.R | 14 +-- rrcov-1.4-3/rrcov/R/PcaCov.R | 106 +++++++++++++++++++++------- rrcov-1.4-3/rrcov/R/PcaHubert.R | 62 +++++++++------- rrcov-1.4-3/rrcov/R/PcaLocantore.R | 64 +++++++++++------ rrcov-1.4-3/rrcov/R/da-utils.R | 2 rrcov-1.4-3/rrcov/build/vignette.rds |binary rrcov-1.4-3/rrcov/inst/doc/rrcov.pdf |binary rrcov-1.4-3/rrcov/man/Lda-class.Rd | 2 rrcov-1.4-3/rrcov/man/Linda-class.Rd | 1 rrcov-1.4-3/rrcov/man/Linda.Rd | 25 ++++++ rrcov-1.4-3/rrcov/man/PcaClassic.Rd | 13 ++- rrcov-1.4-3/rrcov/man/PcaCov.Rd | 17 ++-- rrcov-1.4-3/rrcov/man/PcaHubert.Rd | 13 +-- rrcov-1.4-3/rrcov/man/PcaLocantore.Rd | 17 ++-- rrcov-1.4-3/rrcov/src/sest.c | 7 + rrcov-1.4-3/rrcov/tests/thubert.R | 44 +++++++++++- rrcov-1.4-3/rrcov/tests/thubert.Rout.save |only rrcov-1.4-3/rrcov/tests/tlda.R | 18 ++++ rrcov-1.4-3/rrcov/tests/tlda.Rout.save | 110 ++++++++++++++++++++++++++++-- 27 files changed, 525 insertions(+), 195 deletions(-)
Title: Advanced Image-Processing in R
Description: Bindings to ImageMagick: the most comprehensive open-source image
processing library available. Supports many common formats (png, jpeg, tiff,
pdf, etc) and manipulations (rotate, scale, crop, trim, flip, blur, etc).
All operations are vectorized via the Magick++ STL meaning they operate either
on a single frame or a series of frames for working with layers, collages,
or animation. In RStudio images are automatically previewed when printed to
the console, resulting in an interactive editing environment.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between magick versions 0.2.2 dated 2016-08-19 and 0.3 dated 2016-09-06
magick-0.2.2/magick/inst/Rlogo-old.png |only magick-0.2.2/magick/inst/Rlogo.png |only magick-0.2.2/magick/inst/Rlogo.svg |only magick-0.2.2/magick/inst/banana.gif |only magick-0.2.2/magick/inst/example.webp |only magick-0.2.2/magick/inst/tiger.svg |only magick-0.3/magick/DESCRIPTION | 10 +++-- magick-0.3/magick/MD5 | 43 +++++++++++----------- magick-0.3/magick/NAMESPACE | 6 +++ magick-0.3/magick/NEWS | 6 +++ magick-0.3/magick/R/RcppExports.R | 24 ++++++++---- magick-0.3/magick/R/base.R | 53 +++++++++++++++++++++++---- magick-0.3/magick/R/edit.R | 43 +++++++++++++++------- magick-0.3/magick/R/transformations.R | 12 ++++-- magick-0.3/magick/R/utils.R | 5 ++ magick-0.3/magick/build |only magick-0.3/magick/inst/doc |only magick-0.3/magick/man/edit.Rd | 29 ++++++++++----- magick-0.3/magick/man/transformations.Rd | 8 ++-- magick-0.3/magick/src/Makevars.win | 23 +++++++----- magick-0.3/magick/src/RcppExports.cpp | 57 +++++++++++++++++++++++------- magick-0.3/magick/src/base.cpp | 20 ++++++++-- magick-0.3/magick/src/edit.cpp | 48 ++++++++++++++++++++++--- magick-0.3/magick/src/transformations.cpp | 4 +- magick-0.3/magick/tools/winlibs.R | 5 +- magick-0.3/magick/vignettes |only 26 files changed, 288 insertions(+), 108 deletions(-)