Title: Plot a Model's Response and Residuals
Description: Plot a model's response when varying one or two predictors
while holding the other predictors constant. A poor man's
partial dependence plot. Also plot model residuals and other
information on the model.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between plotmo versions 3.1.5 dated 2016-08-26 and 3.2.0 dated 2016-09-07
plotmo-3.1.5/plotmo/R/backcompat.R |only plotmo-3.1.5/plotmo/R/plot.gbmx.R |only plotmo-3.1.5/plotmo/R/plot.glmnetx.R |only plotmo-3.2.0/plotmo/DESCRIPTION | 13 plotmo-3.2.0/plotmo/MD5 | 134 - plotmo-3.2.0/plotmo/NAMESPACE | 9 plotmo-3.2.0/plotmo/NEWS | 19 plotmo-3.2.0/plotmo/R/call.dots.R | 43 plotmo-3.2.0/plotmo/R/caret.R |only plotmo-3.2.0/plotmo/R/do.par.R | 20 plotmo-3.2.0/plotmo/R/dot.R | 74 plotmo-3.2.0/plotmo/R/gbm.R | 21 plotmo-3.2.0/plotmo/R/glmnet.R | 56 plotmo-3.2.0/plotmo/R/grid.R | 4 plotmo-3.2.0/plotmo/R/lib.R | 47 plotmo-3.2.0/plotmo/R/meta.R | 10 plotmo-3.2.0/plotmo/R/methods.R | 29 plotmo-3.2.0/plotmo/R/pint.R | 6 plotmo-3.2.0/plotmo/R/plot_gbm.R |only plotmo-3.2.0/plotmo/R/plot_glmnet.R |only plotmo-3.2.0/plotmo/R/plotcum.R | 10 plotmo-3.2.0/plotmo/R/plotmo.R | 120 - plotmo-3.2.0/plotmo/R/plotqq.R | 51 plotmo-3.2.0/plotmo/R/plotres.R | 80 - plotmo-3.2.0/plotmo/R/plotresids.R | 134 - plotmo-3.2.0/plotmo/R/predict.R | 2 plotmo-3.2.0/plotmo/R/prolog.R | 2 plotmo-3.2.0/plotmo/R/quantreg.R | 4 plotmo-3.2.0/plotmo/R/residuals.R | 7 plotmo-3.2.0/plotmo/R/response.R | 1 plotmo-3.2.0/plotmo/R/singles.R | 10 plotmo-3.2.0/plotmo/R/stop.if.dots.R | 9 plotmo-3.2.0/plotmo/R/w1.R | 81 - plotmo-3.2.0/plotmo/R/xy.R | 18 plotmo-3.2.0/plotmo/inst/doc/index.html | 10 plotmo-3.2.0/plotmo/inst/doc/modguide.pdf |binary plotmo-3.2.0/plotmo/inst/doc/plotmo-notes.pdf |binary plotmo-3.2.0/plotmo/inst/doc/plotres-notes.pdf |binary plotmo-3.2.0/plotmo/inst/slowtests/linmod.R | 14 plotmo-3.2.0/plotmo/inst/slowtests/linmod.milbo.tutorial.R | 6 plotmo-3.2.0/plotmo/inst/slowtests/make.bat | 6 plotmo-3.2.0/plotmo/inst/slowtests/test.caret.R |only plotmo-3.2.0/plotmo/inst/slowtests/test.caret.Rout.save |only plotmo-3.2.0/plotmo/inst/slowtests/test.caret.bat |only plotmo-3.2.0/plotmo/inst/slowtests/test.center.R | 1 plotmo-3.2.0/plotmo/inst/slowtests/test.center.Rout.save | 25 plotmo-3.2.0/plotmo/inst/slowtests/test.dots.R | 108 - plotmo-3.2.0/plotmo/inst/slowtests/test.dots.Rout.save | 130 - plotmo-3.2.0/plotmo/inst/slowtests/test.emma.Rout.save | 208 +- plotmo-3.2.0/plotmo/inst/slowtests/test.fac.R | 1 plotmo-3.2.0/plotmo/inst/slowtests/test.fac.Rout.save | 57 plotmo-3.2.0/plotmo/inst/slowtests/test.gbm.R |only plotmo-3.2.0/plotmo/inst/slowtests/test.gbm.Rout.save |only plotmo-3.2.0/plotmo/inst/slowtests/test.gbm.bat |only plotmo-3.2.0/plotmo/inst/slowtests/test.glmnet.R | 358 ++++ plotmo-3.2.0/plotmo/inst/slowtests/test.glmnet.Rout.save | 470 +++++- plotmo-3.2.0/plotmo/inst/slowtests/test.ltut.R | 2 plotmo-3.2.0/plotmo/inst/slowtests/test.ltut.Rout.save | 30 plotmo-3.2.0/plotmo/inst/slowtests/test.non.earth.R | 114 - plotmo-3.2.0/plotmo/inst/slowtests/test.non.earth.Rout.save | 748 +++------- plotmo-3.2.0/plotmo/inst/slowtests/test.plotmo.R | 3 plotmo-3.2.0/plotmo/inst/slowtests/test.plotmo.Rout.save | 271 +-- plotmo-3.2.0/plotmo/inst/slowtests/test.plotmo.args.Rout.save | 84 - plotmo-3.2.0/plotmo/inst/slowtests/test.plotmo.dots.Rout.save | 16 plotmo-3.2.0/plotmo/inst/slowtests/test.plotmo.x.R | 1 plotmo-3.2.0/plotmo/inst/slowtests/test.plotmo.x.Rout.save | 5 plotmo-3.2.0/plotmo/inst/slowtests/test.plotmo3.R | 62 plotmo-3.2.0/plotmo/inst/slowtests/test.plotmo3.Rout.save | 291 ++- plotmo-3.2.0/plotmo/inst/slowtests/test.plotres.Rout.save | 14 plotmo-3.2.0/plotmo/man/plot_gbm.Rd |only plotmo-3.2.0/plotmo/man/plot_glmnet.Rd |only plotmo-3.2.0/plotmo/man/plotmo.Rd | 28 plotmo-3.2.0/plotmo/man/plotmo.misc.Rd | 25 plotmo-3.2.0/plotmo/man/plotres.Rd | 44 plotmo-3.2.0/plotmo/tests/test.plotmo.Rout.save | 4 75 files changed, 2346 insertions(+), 1804 deletions(-)
Title: Nonparametric Estimation of Preferential Attachment and Node
Fitness in Temporal Complex Networks
Description: A statistically sound method for estimating jointly the attachment function and node fitness in a temporal complex network by maximizing a suitable penalized log-likelihood function is implemented in this package. Tutorial can be found in the accompanying vignette. For a list of references, please run the command: citation("PAFit").
Author: Thong Pham, Paul Sheridan, Hidetoshi Shimodaira
Maintainer: Thong Pham <thongpham@thongpham.net>
Diff between PAFit versions 0.7.9 dated 2016-07-05 and 0.8.6 dated 2016-09-07
DESCRIPTION | 11 ++-- MD5 | 52 +++++++++++---------- NAMESPACE | 2 R/CreateDataCV.R | 77 +++++++++++++++++++------------ R/FitMultinomial.R |only R/GenerateNet.R | 47 +++++++++---------- R/GetStatistics.R | 6 +- R/PAFit.R | 112 +++++++++++++++++++++++++++++---------------- R/RcppExports.R | 16 ++++-- R/plot.pafit.r | 115 +++++++++++++++++++++++++++++++++++------------ build/vignette.rds |binary inst/CITATION | 14 +++++ inst/doc/Tutorial.pdf |binary man/CreateDataCV.Rd | 12 ++-- man/GenerateNet.Rd | 12 ++-- man/GetStatistics.Rd | 22 +++++--- man/PAFit-package.Rd | 13 +++-- man/PAFit.Rd | 30 ++++++------ man/performCV.Rd | 8 ++- man/plot.PAFit.Rd | 16 ++++-- man/print.PAFit.Rd | 6 +- man/print.PAFitData.Rd | 6 +- man/summary.PAFit.Rd | 6 +- man/summary.PAFitData.Rd | 6 +- src/Cpp_code.cpp | 89 ++++++++++++++++++++++++++---------- src/RcppExports.cpp | 37 +++++++++++---- tests/test_log_linear.R |only tests/tests.R | 6 +- 28 files changed, 474 insertions(+), 247 deletions(-)
Title: A Dependency Management System for Projects and their R Package
Dependencies
Description: Manage the R packages your project depends
on in an isolated, portable, and reproducible way.
Author: Kevin Ushey, Jonathan McPherson, Joe Cheng, Aron Atkins, JJ Allaire
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between packrat versions 0.4.7-1 dated 2016-03-28 and 0.4.8-1 dated 2016-09-07
DESCRIPTION | 8 +-- MD5 | 48 ++++++++++---------- R/cache.R | 79 ++++++++++++++++++++++++++------- R/dependencies.R | 35 ++++++++++---- R/downloader.R | 71 +++++++++++++++++++---------- R/env.R | 28 +++++++++-- R/github.R | 5 +- R/library-support.R | 20 +++++++- R/lockfile.R | 7 ++ R/options.R | 17 +++++-- R/packrat-mode.R | 6 +- R/packrat.R | 19 +++++-- R/paths.R | 51 ++++++++++----------- R/pkg.R | 17 +++---- R/restore.R | 88 +++++++++++++++++++++++++++++-------- R/snapshot.R | 3 + R/utils.R | 23 +++++++-- R/zzz.R | 11 +++- README.md | 5 -- inst/resources/init-rprofile.R | 2 inst/resources/init.R | 2 man/appDependencies.Rd | 3 - man/packrat-options.Rd | 8 ++- tests/test-cranlike-repositories.R | 15 ++++-- tests/testthat/test-github.R | 4 - 25 files changed, 400 insertions(+), 175 deletions(-)
Title: Visually Exploring Random Forests
Description: Graphic elements for exploring Random Forests using the 'randomForest' or
'randomForestSRC' package for survival, regression and classification forests and
'ggplot2' package plotting.
Author: John Ehrlinger <john.ehrlinger@gmail.com>
Maintainer: John Ehrlinger <john.ehrlinger@gmail.com>
Diff between ggRandomForests versions 2.0.0 dated 2016-06-13 and 2.0.1 dated 2016-09-07
ggRandomForests-2.0.0/ggRandomForests/R/interaction_data.R |only ggRandomForests-2.0.0/ggRandomForests/R/partial_coplot_data.R |only ggRandomForests-2.0.0/ggRandomForests/R/partial_data.R |only ggRandomForests-2.0.0/ggRandomForests/R/partial_surface_data.R |only ggRandomForests-2.0.0/ggRandomForests/R/rfsrc_data.R |only ggRandomForests-2.0.0/ggRandomForests/R/varsel_data.R |only ggRandomForests-2.0.0/ggRandomForests/build |only ggRandomForests-2.0.0/ggRandomForests/data |only ggRandomForests-2.0.0/ggRandomForests/inst |only ggRandomForests-2.0.0/ggRandomForests/man/interaction_data.Rd |only ggRandomForests-2.0.0/ggRandomForests/man/partial_coplot_data.Rd |only ggRandomForests-2.0.0/ggRandomForests/man/partial_data.Rd |only ggRandomForests-2.0.0/ggRandomForests/man/partial_surface_data.Rd |only ggRandomForests-2.0.0/ggRandomForests/man/rfsrc_data.Rd |only ggRandomForests-2.0.0/ggRandomForests/man/varsel_data.Rd |only ggRandomForests-2.0.0/ggRandomForests/tests |only ggRandomForests-2.0.0/ggRandomForests/vignettes |only ggRandomForests-2.0.1/ggRandomForests/DESCRIPTION | 14 ggRandomForests-2.0.1/ggRandomForests/MD5 | 142 ++-------- ggRandomForests-2.0.1/ggRandomForests/NEWS | 11 ggRandomForests-2.0.1/ggRandomForests/R/cache_rfsrc_datasets.R | 40 +- ggRandomForests-2.0.1/ggRandomForests/R/calc_roc.R | 8 ggRandomForests-2.0.1/ggRandomForests/R/combine.gg_partial.R | 3 ggRandomForests-2.0.1/ggRandomForests/R/gg_error.R | 12 ggRandomForests-2.0.1/ggRandomForests/R/gg_interaction.R | 10 ggRandomForests-2.0.1/ggRandomForests/R/gg_minimal_depth.R | 13 ggRandomForests-2.0.1/ggRandomForests/R/gg_minimal_vimp.R | 10 ggRandomForests-2.0.1/ggRandomForests/R/gg_partial.R | 11 ggRandomForests-2.0.1/ggRandomForests/R/gg_partial_coplot.R | 6 ggRandomForests-2.0.1/ggRandomForests/R/gg_rfsrc.R | 38 +- ggRandomForests-2.0.1/ggRandomForests/R/gg_roc.R | 4 ggRandomForests-2.0.1/ggRandomForests/R/gg_survival.R | 3 ggRandomForests-2.0.1/ggRandomForests/R/gg_variable.R | 18 - ggRandomForests-2.0.1/ggRandomForests/R/gg_vimp.R | 12 ggRandomForests-2.0.1/ggRandomForests/R/partial.rfsrc.R | 2 ggRandomForests-2.0.1/ggRandomForests/R/plot.gg_rfsrc.R | 12 ggRandomForests-2.0.1/ggRandomForests/R/plot.gg_variable.R | 22 - ggRandomForests-2.0.1/ggRandomForests/R/print.gg_minimal_depth.R | 7 ggRandomForests-2.0.1/ggRandomForests/R/quantile_pts.R | 3 ggRandomForests-2.0.1/ggRandomForests/R/surface_matrix.gg_partial_coplot.R | 3 ggRandomForests-2.0.1/ggRandomForests/README.md | 14 ggRandomForests-2.0.1/ggRandomForests/man/cache_rfsrc_datasets.Rd | 22 - ggRandomForests-2.0.1/ggRandomForests/man/calc_auc.Rd | 4 ggRandomForests-2.0.1/ggRandomForests/man/calc_roc.rfsrc.Rd | 4 ggRandomForests-2.0.1/ggRandomForests/man/combine.gg_partial.Rd | 3 ggRandomForests-2.0.1/ggRandomForests/man/gg_error.Rd | 12 ggRandomForests-2.0.1/ggRandomForests/man/gg_interaction.Rd | 10 ggRandomForests-2.0.1/ggRandomForests/man/gg_minimal_depth.Rd | 13 ggRandomForests-2.0.1/ggRandomForests/man/gg_minimal_vimp.Rd | 10 ggRandomForests-2.0.1/ggRandomForests/man/gg_partial.Rd | 11 ggRandomForests-2.0.1/ggRandomForests/man/gg_partial_coplot.rfsrc.Rd | 6 ggRandomForests-2.0.1/ggRandomForests/man/gg_rfsrc.rfsrc.Rd | 16 - ggRandomForests-2.0.1/ggRandomForests/man/gg_roc.rfsrc.Rd | 4 ggRandomForests-2.0.1/ggRandomForests/man/gg_survival.Rd | 3 ggRandomForests-2.0.1/ggRandomForests/man/gg_variable.Rd | 4 ggRandomForests-2.0.1/ggRandomForests/man/gg_vimp.Rd | 11 ggRandomForests-2.0.1/ggRandomForests/man/partial.rfsrc.Rd | 2 ggRandomForests-2.0.1/ggRandomForests/man/print.gg_minimal_depth.Rd | 7 ggRandomForests-2.0.1/ggRandomForests/man/quantile_pts.Rd | 3 ggRandomForests-2.0.1/ggRandomForests/man/surface_matrix.Rd | 3 60 files changed, 263 insertions(+), 303 deletions(-)
More information about ggRandomForests at CRAN
Permanent link
Title: Significant Interval Discovery with Categorical Covariates
Description: A method which uses the Cochran-Mantel-Haenszel test with significant pattern mining to detect intervals in binary genotype data which are significantly associated with a particular phenotype, while accounting for categorical covariates.
Author: Felipe Llinares Lopez, Dean Bodenham
Maintainer: Dean Bodenham <deanbodenhambsse@gmail.com>
Diff between fastcmh versions 0.2.4 dated 2016-09-05 and 0.2.5 dated 2016-09-07
DESCRIPTION | 6 ++-- MD5 | 6 ++-- src/fastcmh_cpp.cpp | 75 ++++++++++++++++++++++++++++------------------------ src/fdr.cpp | 7 ++++ 4 files changed, 53 insertions(+), 41 deletions(-)
Title: Bibliometric and Co-Citation Analysis Tool
Description: Tool for quantitative research in scientometrics and bibliometrics.
It provides various routines for importing bibliographic data from SCOPUS and
Thomson Reuters' ISI Web of Knowledge databases, performing bibliometric analysis
and building data matrices for co-citation, coupling and scientific collaboration analysis.
Author: Massimo Aria [cre, aut],
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 1.0 dated 2016-07-27 and 1.1 dated 2016-09-07
DESCRIPTION | 8 - MD5 | 16 +- NEWS | 8 + R/isi2df.R | 1 R/isibib2df.R | 4 inst/doc/bibliometrix-vignette.R | 3 inst/doc/bibliometrix-vignette.Rmd | 20 ++ inst/doc/bibliometrix-vignette.html | 271 ++++++++++++++++++++++-------------- vignettes/bibliometrix-vignette.Rmd | 20 ++ 9 files changed, 238 insertions(+), 113 deletions(-)
Title: Interface to Geometry Engine - Open Source (GEOS)
Description: Interface to Geometry Engine - Open Source (GEOS) using the C API for topology operations on geometries. The GEOS library is external to the package, and, when installing the package from source, must be correctly installed first. Windows and Mac Intel OS X binaries are provided on CRAN.
Author: Roger Bivand [cre, aut],
Colin Rundel [aut],
Edzer Pebesma [ctb],
Karl Ove Hufthammer [ctb],
Rainer Stuetz [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgeos versions 0.3-19 dated 2016-04-04 and 0.3-20 dated 2016-09-07
rgeos-0.3-19/rgeos/inst/tests |only rgeos-0.3-20/rgeos/ChangeLog | 50 +++++++++ rgeos-0.3-20/rgeos/DESCRIPTION | 14 +- rgeos-0.3-20/rgeos/MD5 | 132 ++++++++++++------------ rgeos-0.3-20/rgeos/NAMESPACE | 2 rgeos-0.3-20/rgeos/R/rgeos_linearref.R | 69 ++++++++++++ rgeos-0.3-20/rgeos/configure | 18 +-- rgeos-0.3-20/rgeos/inst/ChangeLog | 50 +++++++++ rgeos-0.3-20/rgeos/inst/SVN_VERSION | 2 rgeos-0.3-20/rgeos/man/linref-gInterpolate.Rd |only rgeos-0.3-20/rgeos/man/linref-gProject.Rd |only rgeos-0.3-20/rgeos/man/topo-unary-gEnvelope.Rd | 2 rgeos-0.3-20/rgeos/src/init.c | 6 - rgeos-0.3-20/rgeos/src/rgeos.h | 5 rgeos-0.3-20/rgeos/src/rgeos_coord.c | 2 rgeos-0.3-20/rgeos/src/rgeos_geos2R.c | 8 - rgeos-0.3-20/rgeos/src/rgeos_linearref.c |only rgeos-0.3-20/rgeos/src/rgeos_predicate_binary.c | 4 rgeos-0.3-20/rgeos/tests/test-all.R | 3 rgeos-0.3-20/rgeos/tests/testthat |only 20 files changed, 277 insertions(+), 90 deletions(-)
Title: ML and MCMC Methods for Pedigree Reconstruction and Analysis
Description: The primary aim of MasterBayes is to use MCMC techniques to integrate over uncertainty in pedigree configurations estimated from molecular markers and phenotypic data. Emphasis is put on the marginal distribution of parameters that relate the phenotypic data to the pedigree. All simulation is done in compiled C++ for efficiency.
Author: Jarrod Hadfield
Maintainer: Jarrod Hadfield <j.hadfield@ed.ac.uk>
Diff between MasterBayes versions 2.52 dated 2014-12-03 and 2.53.1 dated 2016-09-07
DESCRIPTION | 9 +++---- MD5 | 14 +++++------ NAMESPACE | 2 + R/getXlist.R | 4 +-- R/simgenotypes.R | 4 +-- R/varPed.R | 12 ++++----- build/vignette.rds |binary src/calcX_Gcervus.cc | 64 ++++++++++++++++++++++++++++----------------------- 8 files changed, 60 insertions(+), 49 deletions(-)
Title: Latent Variable Analysis
Description: Fit a variety of latent variable models, including confirmatory
factor analysis, structural equation modeling and latent growth curve models.
Author: Yves Rosseel [aut, cre],
Daniel Oberski [ctb],
Jarrett Byrnes [ctb],
Leonard Vanbrabant [ctb],
Victoria Savalei [ctb],
Ed Merkle [ctb],
Michael Hallquist [ctb],
Mijke Rhemtulla [ctb],
Myrsini Katsikatsou [ctb],
Mariska Barendse [ctb]
Maintainer: Yves Rosseel <Yves.Rosseel@UGent.be>
Diff between lavaan versions 0.5-20 dated 2015-11-07 and 0.5-21 dated 2016-09-07
lavaan-0.5-20/lavaan/R/lav_gamma.R |only lavaan-0.5-20/lavaan/R/lav_reliability.R |only lavaan-0.5-20/lavaan/R/lavaan.R |only lavaan-0.5-20/lavaan/R/prelav.R |only lavaan-0.5-21/lavaan/DESCRIPTION | 13 lavaan-0.5-21/lavaan/MD5 | 207 ++-- lavaan-0.5-21/lavaan/NAMESPACE | 6 lavaan-0.5-21/lavaan/R/00class.R | 44 lavaan-0.5-21/lavaan/R/ctr_estfun.R | 71 + lavaan-0.5-21/lavaan/R/ctr_informative_testing.R | 361 ++++--- lavaan-0.5-21/lavaan/R/ctr_pairwise_fit.R | 7 lavaan-0.5-21/lavaan/R/ctr_pml_plrt.R | 9 lavaan-0.5-21/lavaan/R/ctr_pml_plrt_nested.R | 10 lavaan-0.5-21/lavaan/R/ctr_pml_utils.R |only lavaan-0.5-21/lavaan/R/lav_bootstrap.R | 74 - lavaan-0.5-21/lavaan/R/lav_bootstrap_lrt.R | 41 lavaan-0.5-21/lavaan/R/lav_constraints.R | 35 lavaan-0.5-21/lavaan/R/lav_cor.R | 12 lavaan-0.5-21/lavaan/R/lav_data.R | 157 ++- lavaan-0.5-21/lavaan/R/lav_export.R | 5 lavaan-0.5-21/lavaan/R/lav_export_mplus.R | 2 lavaan-0.5-21/lavaan/R/lav_fabin.R | 5 lavaan-0.5-21/lavaan/R/lav_fiml.R | 49 lavaan-0.5-21/lavaan/R/lav_fit_measures.R | 448 ++++++--- lavaan-0.5-21/lavaan/R/lav_integrate.R | 61 - lavaan-0.5-21/lavaan/R/lav_lavaanList_methods.R |only lavaan-0.5-21/lavaan/R/lav_lavaanList_multipleGroups.R |only lavaan-0.5-21/lavaan/R/lav_lavaanList_multipleImputation.R |only lavaan-0.5-21/lavaan/R/lav_lavaanList_simulate.R |only lavaan-0.5-21/lavaan/R/lav_matrix.R | 425 ++++++++ lavaan-0.5-21/lavaan/R/lav_missing.R | 240 ---- lavaan-0.5-21/lavaan/R/lav_model.R | 25 lavaan-0.5-21/lavaan/R/lav_model_compute.R | 145 ++ lavaan-0.5-21/lavaan/R/lav_model_estimate.R | 6 lavaan-0.5-21/lavaan/R/lav_model_gradient.R | 302 ++++-- lavaan-0.5-21/lavaan/R/lav_model_gradient_mml.R | 1 lavaan-0.5-21/lavaan/R/lav_model_gradient_pml.R | 105 +- lavaan-0.5-21/lavaan/R/lav_model_implied.R | 11 lavaan-0.5-21/lavaan/R/lav_model_information.R | 96 + lavaan-0.5-21/lavaan/R/lav_model_lik.R | 12 lavaan-0.5-21/lavaan/R/lav_model_objective.R | 103 +- lavaan-0.5-21/lavaan/R/lav_model_utils.R | 3 lavaan-0.5-21/lavaan/R/lav_model_vcov.R | 46 lavaan-0.5-21/lavaan/R/lav_model_wls.R | 113 +- lavaan-0.5-21/lavaan/R/lav_modification.R | 6 lavaan-0.5-21/lavaan/R/lav_muthen1984.R | 253 +---- lavaan-0.5-21/lavaan/R/lav_mvnorm.R |only lavaan-0.5-21/lavaan/R/lav_mvnorm_h1.R |only lavaan-0.5-21/lavaan/R/lav_mvnorm_missing.R |only lavaan-0.5-21/lavaan/R/lav_mvnorm_missing_h1.R |only lavaan-0.5-21/lavaan/R/lav_mvreg.R |only lavaan-0.5-21/lavaan/R/lav_norm.R | 25 lavaan-0.5-21/lavaan/R/lav_object_inspect.R | 461 +++++++-- lavaan-0.5-21/lavaan/R/lav_object_methods.R | 99 +- lavaan-0.5-21/lavaan/R/lav_object_post_check.R | 69 - lavaan-0.5-21/lavaan/R/lav_objective.R | 187 +++ lavaan-0.5-21/lavaan/R/lav_ols.R | 3 lavaan-0.5-21/lavaan/R/lav_options.R | 96 + lavaan-0.5-21/lavaan/R/lav_partable.R | 449 ++++++--- lavaan-0.5-21/lavaan/R/lav_partable_complete.R | 6 lavaan-0.5-21/lavaan/R/lav_partable_constraints.R | 61 + lavaan-0.5-21/lavaan/R/lav_partable_independence.R | 138 +- lavaan-0.5-21/lavaan/R/lav_partable_unrestricted.R | 146 +- lavaan-0.5-21/lavaan/R/lav_partable_vnames.R | 152 ++- lavaan-0.5-21/lavaan/R/lav_polychor.R | 37 lavaan-0.5-21/lavaan/R/lav_predict.R | 58 - lavaan-0.5-21/lavaan/R/lav_print.R | 111 +- lavaan-0.5-21/lavaan/R/lav_representation_lisrel.R | 165 ++- lavaan-0.5-21/lavaan/R/lav_residuals.R | 122 +- lavaan-0.5-21/lavaan/R/lav_samplestats.R | 641 ++++++++----- lavaan-0.5-21/lavaan/R/lav_samplestats_gamma.R | 305 +++++- lavaan-0.5-21/lavaan/R/lav_samplestats_icov.R |only lavaan-0.5-21/lavaan/R/lav_samplestats_igamma.R |only lavaan-0.5-21/lavaan/R/lav_samplestats_step1.R |only lavaan-0.5-21/lavaan/R/lav_samplestats_step2.R |only lavaan-0.5-21/lavaan/R/lav_samplestats_wls_obs.R |only lavaan-0.5-21/lavaan/R/lav_simulate.R | 2 lavaan-0.5-21/lavaan/R/lav_standardize.R | 31 lavaan-0.5-21/lavaan/R/lav_start.R | 250 ++++- lavaan-0.5-21/lavaan/R/lav_syntax.R | 55 - lavaan-0.5-21/lavaan/R/lav_tables.R | 52 - lavaan-0.5-21/lavaan/R/lav_test.R | 102 +- lavaan-0.5-21/lavaan/R/lav_test_LRT.R | 12 lavaan-0.5-21/lavaan/R/lav_test_Wald.R | 4 lavaan-0.5-21/lavaan/R/lav_test_diff.R | 6 lavaan-0.5-21/lavaan/R/lav_test_satorra_bentler.R | 5 lavaan-0.5-21/lavaan/R/lav_test_score.R | 10 lavaan-0.5-21/lavaan/R/lav_utils.R | 37 lavaan-0.5-21/lavaan/R/xxx_fsr.R |only lavaan-0.5-21/lavaan/R/xxx_lavaan.R |only lavaan-0.5-21/lavaan/R/xxx_lavaanList.R |only lavaan-0.5-21/lavaan/R/xxx_prelav.R |only lavaan-0.5-21/lavaan/R/zzz_OLDNAMES.R | 3 lavaan-0.5-21/lavaan/man/HolzingerSwineford1939.Rd | 2 lavaan-0.5-21/lavaan/man/InformativeTesting.Rd | 85 + lavaan-0.5-21/lavaan/man/PoliticalDemocracy.Rd | 2 lavaan-0.5-21/lavaan/man/bootstrap.Rd | 13 lavaan-0.5-21/lavaan/man/cfa.Rd | 10 lavaan-0.5-21/lavaan/man/estfun.Rd | 18 lavaan-0.5-21/lavaan/man/fsr.Rd |only lavaan-0.5-21/lavaan/man/growth.Rd | 10 lavaan-0.5-21/lavaan/man/lavInspect.Rd | 12 lavaan-0.5-21/lavaan/man/lavMatrixRepresentation.Rd | 8 lavaan-0.5-21/lavaan/man/lavNames.Rd |only lavaan-0.5-21/lavaan/man/lavPredict.Rd | 5 lavaan-0.5-21/lavaan/man/lavTablesFit.Rd | 4 lavaan-0.5-21/lavaan/man/lavTestLRT.Rd | 6 lavaan-0.5-21/lavaan/man/lav_matrix.Rd | 10 lavaan-0.5-21/lavaan/man/lav_partable.Rd | 13 lavaan-0.5-21/lavaan/man/lavaan-class.Rd | 19 lavaan-0.5-21/lavaan/man/lavaan.Rd | 8 lavaan-0.5-21/lavaan/man/lavaanList-class.Rd |only lavaan-0.5-21/lavaan/man/lavaanList.Rd |only lavaan-0.5-21/lavaan/man/model.syntax.Rd | 27 lavaan-0.5-21/lavaan/man/parameterEstimates.Rd | 11 lavaan-0.5-21/lavaan/man/plot.InformativeTesting.Rd | 110 +- lavaan-0.5-21/lavaan/man/sem.Rd | 10 lavaan-0.5-21/lavaan/man/simulateData.Rd | 10 118 files changed, 5588 insertions(+), 2214 deletions(-)
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other
functions for community and vegetation ecologists.
Author: Jari Oksanen, F. Guillaume Blanchet, Michael Friendly, Roeland Kindt,
Pierre Legendre, Dan McGlinn, Peter R. Minchin, R. B. O'Hara,
Gavin L. Simpson, Peter Solymos, M. Henry H. Stevens, Eduard Szoecs,
Helene Wagner
Maintainer: Jari Oksanen <jari.oksanen@oulu.fi>
Diff between vegan versions 2.4-0 dated 2016-06-15 and 2.4-1 dated 2016-09-07
DESCRIPTION | 8 - MD5 | 74 +++++++++--------- R/adipart.default.R | 2 R/as.mcmc.oecosimu.R | 7 - R/betadisper.R | 10 +- R/centroids.cca.R | 8 + R/diversity.R | 7 + R/envfit.default.R | 11 +- R/factorfit.R | 2 R/fitted.capscale.R | 6 - R/goodness.cca.R | 19 +++- R/hiersimu.default.R | 2 R/inertcomp.R | 6 - R/linestack.R | 7 - R/meandist.R | 4 R/multipart.default.R | 2 R/nestedbetasor.R | 4 R/ordisplom.R | 2 R/rarefy.R | 4 R/stressplot.wcmdscale.R | 16 +++ build/partial.rdb |binary inst/NEWS.Rd | 76 ++++++++++++++++++ inst/doc/FAQ-vegan.Rmd | 8 - inst/doc/FAQ-vegan.html | 8 - inst/doc/decision-vegan.pdf |binary inst/doc/diversity-vegan.pdf |binary inst/doc/intro-vegan.pdf |binary inst/doc/partitioning.pdf |binary man/betadisper.Rd | 2 man/linestack.Rd | 2 man/nestedtemp.Rd | 37 ++++----- man/nullmodel.Rd | 11 +- man/oecosimu.Rd | 16 +++ src/cepin.f | 10 +- src/decorana.f | 175 ++++++++++++++++++++++++++++--------------- src/monoMDS.f | 4 src/ordering.f | 48 ++++++----- vignettes/FAQ-vegan.Rmd | 8 - 38 files changed, 401 insertions(+), 205 deletions(-)
Title: Temporal Trend Analysis Graphical Interface
Description: This interface was created to develop a standard procedure
to analyse temporal trend in the framework of the OSPAR convention.
The analysis process run through 4 successive steps : 1) manipulate your data, 2)
select the parameters you want to analyse, 3) build your regulated
time series, 4) perform diagnosis and analysis and 5) read the results.
Statistical analysis call other package function such as Kendall tests
or cusum() function.
Author: David DEVREKER [aut, cre],
Alain LEFEBVRE [aut]
Maintainer: David DEVREKER <David.Devreker@ifremer.fr>
Diff between TTAinterfaceTrendAnalysis versions 1.5.2 dated 2015-12-16 and 1.5.3 dated 2016-09-07
DESCRIPTION | 22 +++++------ MD5 | 47 +++++++++++++++---------- NAMESPACE | 11 +++-- NEWS | 5 ++ R/About.R | 6 +-- R/FULLoption.r | 81 +++++++++++++++++++++++++------------------- R/TTAinterface.R | 60 ++++++++++++++++++++------------ R/aide1.r | 2 - R/aide2.r | 2 - R/aide3.r | 7 ++- R/aide4.r | 2 - R/fixdata.R | 55 +++++++++++++++++++---------- R/interpTs.R |only R/mannKen.R |only R/seaKen.R |only R/seasonTrend.R |only R/selectdirectory.R | 55 +++++++++++++++++++---------- R/zzz.R | 2 - build/vignette.rds |binary inst/aide/Small_Logo_R2.gif |only inst/doc/TTAVignette.Rnw | 2 - inst/doc/TTAVignette.pdf |binary inst/doc/UserGuide.pdf |binary man/TTAinterface-package.Rd | 6 +-- man/interpTs.Rd |only man/mannKen.Rd |only man/seaKen.Rd |only man/seasonTrend.Rd |only vignettes/TTAVignette.Rnw | 2 - 29 files changed, 224 insertions(+), 143 deletions(-)
More information about TTAinterfaceTrendAnalysis at CRAN
Permanent link
Title: Categorical Landscape Simulation Facility
Description: Simulates categorical maps on actual geographical realms, starting from either empty landscapes or landscapes provided by the user (e.g. land use maps). Allows to tweak or create landscapes while retaining a high degree of control on its features, without the hassle of specifying each location attribute. In this it differs from other tools which generate null or neutral landscapes in a theoretical space. The basic algorithm currently implemented uses a simple agent style/cellular automata growth model, with no rules (apart from areas of exclusion). Outputs are raster dataset exportable to any common GIS format.
Author: Dario Masante [aut, cre]
Maintainer: Dario Masante <dmasan@ceh.ac.uk>
Diff between landscapeR versions 1.1.1 dated 2016-08-31 and 1.1.2 dated 2016-09-07
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS.md | 12 ++++++++++++ R/makeClass.R | 35 +++++++++++++++++++++++------------ R/makePatch.R | 4 ++-- inst/doc/landscapeR.html | 43 +++++++++++++++++-------------------------- man/makePatch.Rd | 5 ++--- 7 files changed, 68 insertions(+), 55 deletions(-)
Title: Effect Size Computation for Meta Analysis
Description: Implementation of the web-based 'Practical Meta-Analysis Effect Size
Calculator' from David B. Wilson in R. Based on the input, the effect size
can be returned as standardized mean difference, Hedges' g, correlation
coefficient r or Fisher's transformation z, odds ratio or log odds effect size.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between esc versions 0.1.0 dated 2016-07-08 and 0.2.0 dated 2016-09-07
DESCRIPTION | 9 ++- MD5 | 51 +++++++++++----------- NAMESPACE | 55 ++++++++++++------------ NEWS | 5 ++ NEWS.md | 6 +- R/combine_esc.R | 68 +++++++++++++++++++++++++++++ R/esc_beta.R | 116 +++++++++++++++++++++++++-------------------------- build/partial.rdb |binary man/combine_esc.Rd | 73 ++++++++++++++++---------------- man/esc.Rd | 6 +- man/esc_2x2.Rd | 2 man/esc_B.Rd | 2 man/esc_beta.Rd | 2 man/esc_bin_prop.Rd | 2 man/esc_chisq.Rd | 2 man/esc_d2logit.Rd | 2 man/esc_d2or.Rd | 2 man/esc_d2r.Rd | 2 man/esc_f.Rd | 2 man/esc_mean_gain.Rd | 2 man/esc_mean_sd.Rd | 2 man/esc_mean_se.Rd | 2 man/esc_or2d.Rd | 2 man/esc_phi.Rd | 2 man/esc_rpb.Rd | 2 man/esc_t.Rd | 2 man/write_esc.Rd |only 27 files changed, 251 insertions(+), 170 deletions(-)
Title: Fitting Ising Models Using the ELasso Method
Description: This network estimation procedure eLasso, which is based on the Ising model, combines l1-regularized logistic regression with model selection based on the Extended Bayesian Information Criterion (EBIC). EBIC is a fit measure that identifies relevant relationships between variables. The resulting network consists of variables as nodes and relevant relationships as edges. Can deal with binary data.
Author: Claudia van Borkulo, Sacha Epskamp, with contributions from Alexander Robitzsch
Maintainer: Claudia van Borkulo <cvborkulo@gmail.com>
Diff between IsingFit versions 0.3.0 dated 2014-10-23 and 0.3.1 dated 2016-09-07
IsingFit-0.3.0/IsingFit/R/exporttoNetLogo.IsingFit.R |only IsingFit-0.3.1/IsingFit/DESCRIPTION | 10 +++--- IsingFit-0.3.1/IsingFit/MD5 | 10 +++--- IsingFit-0.3.1/IsingFit/NAMESPACE | 4 +- IsingFit-0.3.1/IsingFit/R/ComparableNetworks.R |only IsingFit-0.3.1/IsingFit/R/IsingFit.R | 30 +++++++------------ IsingFit-0.3.1/IsingFit/man/isingfit-package.rd | 5 +-- 7 files changed, 28 insertions(+), 31 deletions(-)
Title: Easy Microarray Data Analysis
Description: We propose both a clear analysis strategy and a selection of tools to investigate microarray gene expression data. The most usual and relevant existing R functions were discussed, validated and gathered in an easy-to-use R package (EMA) devoted to gene expression microarray analysis. These functions were improved for ease of use, enhanced visualisation and better interpretation of results.
Author: Nicolas Servant, Eleonore Gravier, Pierre Gestraud, Cecile Laurent, Caroline Paccard, Anne Biton, Jonas Mandel, Bernard Asselain, Emmanuel Barillot, Philippe Hupe
Maintainer: Pierre Gestraud <pierre.gestraud@curie.fr>
Diff between EMA versions 1.4.4 dated 2014-03-28 and 1.4.5 dated 2016-09-07
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- NAMESPACE | 14 +++++++++++++- R/anafunc.R | 46 +++++++++++++++++++++++----------------------- R/pca.R | 4 ++-- 5 files changed, 49 insertions(+), 37 deletions(-)
Title: Session Reconstruction and Analysis
Description: Functions to reconstruct sessions from web log or other user trace data
and calculate various metrics around them, producing tabular,
output that is compatible with 'dplyr' or 'data.table' centered processes.
Author: Oliver Keyes
Maintainer: Oliver Keyes <ironholds@gmail.com>
Diff between reconstructr versions 1.1.1 dated 2016-09-02 and 2.0.0 dated 2016-09-07
reconstructr-1.1.1/reconstructr/R/parameter_fillers.R |only reconstructr-1.1.1/reconstructr/R/to_seconds.R |only reconstructr-1.1.1/reconstructr/man/event_time.Rd |only reconstructr-1.1.1/reconstructr/man/padding_value.Rd |only reconstructr-1.1.1/reconstructr/man/reconstruct_sessions.Rd |only reconstructr-1.1.1/reconstructr/man/session_events.Rd |only reconstructr-1.1.1/reconstructr/man/to_seconds.Rd |only reconstructr-1.1.1/reconstructr/src/session_metrics.cpp |only reconstructr-1.1.1/reconstructr/src/session_metrics.h |only reconstructr-1.1.1/reconstructr/src/sessionise.cpp |only reconstructr-1.1.1/reconstructr/src/sessionise.h |only reconstructr-1.1.1/reconstructr/tests/testthat/test_bounce_rate.R |only reconstructr-1.1.1/reconstructr/tests/testthat/test_padding_value.R |only reconstructr-1.1.1/reconstructr/tests/testthat/test_session_events.R |only reconstructr-1.1.1/reconstructr/tests/testthat/test_session_length.R |only reconstructr-1.1.1/reconstructr/tests/testthat/test_sessionisation.R |only reconstructr-2.0.0/reconstructr/DESCRIPTION | 20 reconstructr-2.0.0/reconstructr/MD5 | 58 +- reconstructr-2.0.0/reconstructr/NAMESPACE | 11 reconstructr-2.0.0/reconstructr/NEWS | 5 reconstructr-2.0.0/reconstructr/R/RcppExports.R | 99 ---- reconstructr-2.0.0/reconstructr/R/metrics.R | 224 +++++++--- reconstructr-2.0.0/reconstructr/R/session_dataset.R | 16 reconstructr-2.0.0/reconstructr/R/sessionise.R |only reconstructr-2.0.0/reconstructr/R/zzz.R |only reconstructr-2.0.0/reconstructr/README.md | 12 reconstructr-2.0.0/reconstructr/build/vignette.rds |binary reconstructr-2.0.0/reconstructr/data/session_dataset.rda |binary reconstructr-2.0.0/reconstructr/inst/doc/Introduction.R | 60 +- reconstructr-2.0.0/reconstructr/inst/doc/Introduction.Rmd | 115 ++--- reconstructr-2.0.0/reconstructr/inst/doc/Introduction.html | 112 ++--- reconstructr-2.0.0/reconstructr/man/bounce_rate.Rd | 38 + reconstructr-2.0.0/reconstructr/man/session_count.Rd |only reconstructr-2.0.0/reconstructr/man/session_dataset.Rd | 19 reconstructr-2.0.0/reconstructr/man/session_length.Rd | 53 +- reconstructr-2.0.0/reconstructr/man/sessionise.Rd |only reconstructr-2.0.0/reconstructr/man/time_on_page.Rd |only reconstructr-2.0.0/reconstructr/src/RcppExports.cpp | 47 -- reconstructr-2.0.0/reconstructr/src/reconstructr.cpp | 155 +----- reconstructr-2.0.0/reconstructr/tests/testthat/test_reconstructr.R |only reconstructr-2.0.0/reconstructr/vignettes/Introduction.Rmd | 115 ++--- 41 files changed, 548 insertions(+), 611 deletions(-)
Title: Random Forests for Survival, Regression and Classification
(RF-SRC)
Description: A unified treatment of Breiman's random forests for survival, regression and classification problems based on Ishwaran and Kogalur's random survival forests (RSF) package. The package runs in both serial and parallel (OpenMP) modes. Now extended to include multivariate and unsupervised forests.
Author: Hemant Ishwaran <hemant.ishwaran@gmail.com>, Udaya B. Kogalur <ubk@kogalur.com>
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 2.2.0 dated 2016-05-16 and 2.3.0 dated 2016-09-07
DESCRIPTION | 8 MD5 | 67 NAMESPACE | 30 R/data.utilities.R | 57 R/factor.utilities.R | 2 R/find.interaction.R | 4 R/generic.impute.rfsrc.R | 2 R/generic.predict.rfsrc.R | 1216 +++++++-------- R/impute.rfsrc.R | 2 R/max.subtree.R | 2 R/partial.rfsrc.R |only R/plot.competing.risk.R | 2 R/plot.rfsrc.R | 8 R/plot.survival.R | 17 R/plot.variable.R | 251 ++- R/predict.rfsrc.R | 6 R/print.rfsrc.R | 8 R/rf2rfz.R | 2 R/rfsrc.R | 144 - R/rfsrc.news.R | 2 R/rfsrcSyn.R | 2 R/stat.split.R | 2 R/utilities.R | 95 - R/var.select.R | 6 R/vimp.R | 2 R/zzz.R | 2 configure.ac | 2 inst/NEWS | 14 inst/doc/rsf-Rnews.pdf |binary man/plot.variable.Rd | 18 man/predict.rfsrc.Rd | 4 man/rfsrc.Rd | 8 man/stat.split.Rd | 2 src/randomForestSRC.c | 3585 ++++++++++++++++++++++++++-------------------- src/randomForestSRC.h | 356 ++-- 35 files changed, 3298 insertions(+), 2630 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Running 'MLwiN' from Within R
Description: An R command interface to the 'MLwiN' multilevel
modelling software package.
Author: Zhengzheng Zhang [aut, cre],
Chris Charlton [aut],
Richard Parker [aut],
George Leckie [aut],
William Browne [aut]
Maintainer: Zhengzheng Zhang <zhengzheng236@gmail.com>
Diff between R2MLwiN versions 0.8-2 dated 2016-04-12 and 0.8-3 dated 2016-09-07
DESCRIPTION | 14 - MD5 | 166 +++++++++--------- NAMESPACE | 6 NEWS | 46 ++++- R/BD.R | 2 R/Formula.translate.R | 300 +++++++++++++-------------------- R/Formula.translate.compat.R | 4 R/MCSE.R | 2 R/Untoggle.R | 2 R/caterpillar.R | 2 R/caterpillarR.R | 2 R/df2matrix.R | 2 R/double2singlePrecision.R | 2 R/matrix2df.R | 2 R/mlwin2bugs.R | 2 R/mlwinfitIGLS.R | 113 +++++++++++- R/mlwinfitMCMC.R | 146 +++++++++++++++- R/pkgname.R | 15 + R/predCurves.r | 2 R/predLines.r | 5 R/prior2macro.R | 2 R/runMLwiN.R | 28 +-- R/sixway.R | 10 - R/trajectories.R | 11 + R/write.IGLS.R | 2 R/write.MCMC.R | 2 R/ws2foreign.R | 2 demo/MCMCGuide01.R | 5 demo/MCMCGuide02.R | 6 demo/MCMCGuide03.R | 7 demo/MCMCGuide04.R | 17 + demo/MCMCGuide05.R | 10 - demo/MCMCGuide06.R | 19 -- demo/MCMCGuide10.R | 22 -- demo/MCMCGuide18.R | 6 inst/CITATION | 56 +++--- man/BD.Rd | 4 man/Formula.translate.Rd | 5 man/Formula.translate.compat.Rd | 4 man/MCSE.Rd | 4 man/R2MLwiN.Rd | 30 ++- man/Untoggle.Rd | 10 - man/caterpillar.Rd | 6 man/caterpillarR.Rd | 12 - man/coef-mlwinfitIGLS-method.Rd | 2 man/coef-mlwinfitMCMC-method.Rd | 2 man/deviance-mlwinfitIGLS-method.Rd | 2 man/df.residual-mlwinfitIGLS-method.Rd | 2 man/df2matrix.Rd | 4 man/double2singlePrecision.Rd | 4 man/extract-methods-igls.Rd | 4 man/extract-methods-mcmc.Rd | 4 man/extract-mlwinfitIGLS-method.Rd |only man/extract-mlwinfitMCMC-method.Rd |only man/fitted-mlwinfitIGLS-method.Rd | 2 man/fitted-mlwinfitMCMC-method.Rd | 2 man/formula-mlwinfitIGLS-method.Rd | 2 man/formula-mlwinfitMCMC-method.Rd | 2 man/getSummary-mlwinfitIGLS-method.Rd |only man/getSummary-mlwinfitMCMC-method.Rd |only man/logLik-mlwinfitIGLS-method.Rd | 2 man/matrix2df.Rd | 15 + man/mlwin2bugs.Rd | 4 man/mlwinfitIGLS-class.Rd | 9 man/mlwinfitMCMC-class.Rd | 13 - man/nobs-mlwinfitIGLS-method.Rd | 2 man/nobs-mlwinfitMCMC-method.Rd | 2 man/predCurves.Rd | 8 man/predLines.Rd | 9 man/predict-mlwinfitIGLS-method.Rd | 2 man/predict-mlwinfitMCMC-method.Rd | 4 man/prior2macro.Rd | 4 man/residuals-mlwinfitIGLS-method.Rd | 2 man/residuals-mlwinfitMCMC-method.Rd | 2 man/runMLwiN.Rd | 12 - man/sixway.Rd | 9 man/summary-methods-igls.Rd | 4 man/summary-methods-mcmc.Rd | 4 man/trajectories.Rd | 6 man/update-mlwinfitIGLS-method.Rd | 2 man/update-mlwinfitMCMC-method.Rd | 2 man/vcov-mlwinfitIGLS-method.Rd | 2 man/vcov-mlwinfitMCMC-method.Rd | 2 man/write.IGLS.Rd | 8 man/write.MCMC.Rd | 4 man/ws2foreign.Rd | 7 86 files changed, 808 insertions(+), 479 deletions(-)
Title: Toolset for Corpus Analysis
Description: Tools for corpus analysis using the CWB as an efficient backend.
The package offers basic functionality to flexibly create subcorpora and to
carry out and basic statistical operations. Beyond that, it is intended to
serve as an interface to packages implementing advanced statistical
procedures.
Author: Andreas Blaette
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between polmineR versions 0.6.1 dated 2016-06-23 and 0.6.2 dated 2016-09-07
polmineR-0.6.1/polmineR/R/cooccurrence_method.R |only polmineR-0.6.1/polmineR/man/as.cqp.Rd |only polmineR-0.6.1/polmineR/man/cooccurrence.Rd |only polmineR-0.6.1/polmineR/man/datesPeriod.Rd |only polmineR-0.6.2/polmineR/DESCRIPTION | 41 +- polmineR-0.6.2/polmineR/MD5 | 96 +++--- polmineR-0.6.2/polmineR/NAMESPACE | 5 polmineR-0.6.2/polmineR/NEWS | 15 polmineR-0.6.2/polmineR/R/CQI.Rcpp.R |only polmineR-0.6.2/polmineR/R/as.DocumentTermMatrix_method.R | 59 +-- polmineR-0.6.2/polmineR/R/as.markdown_method.R | 4 polmineR-0.6.2/polmineR/R/as.speeches_method.R | 58 ++- polmineR-0.6.2/polmineR/R/blapply_method.R | 129 ++++++-- polmineR-0.6.2/polmineR/R/compare_method.R | 59 +-- polmineR-0.6.2/polmineR/R/context_class.R | 1 polmineR-0.6.2/polmineR/R/context_method.R | 101 ++---- polmineR-0.6.2/polmineR/R/cooccurrencesBundle_methods.R | 18 - polmineR-0.6.2/polmineR/R/cooccurrences_method.R | 133 +++----- polmineR-0.6.2/polmineR/R/count_method.R | 34 +- polmineR-0.6.2/polmineR/R/cpos_method.R | 21 - polmineR-0.6.2/polmineR/R/dispersion_method.R | 47 ++ polmineR-0.6.2/polmineR/R/divide_method.R |only polmineR-0.6.2/polmineR/R/frequencies_method.R | 4 polmineR-0.6.2/polmineR/R/highlight_method.R | 4 polmineR-0.6.2/polmineR/R/hits_class.R | 108 ++---- polmineR-0.6.2/polmineR/R/kwic_method.R | 13 polmineR-0.6.2/polmineR/R/ngrams_method.R | 75 +++- polmineR-0.6.2/polmineR/R/partitionBundle_method.R | 184 +++++------ polmineR-0.6.2/polmineR/R/partitionBundle_methods.R | 2 polmineR-0.6.2/polmineR/R/partition_method.R | 26 + polmineR-0.6.2/polmineR/R/polmineR_package.R | 6 polmineR-0.6.2/polmineR/R/textstat_class.R | 4 polmineR-0.6.2/polmineR/R/utils.R | 236 ++------------- polmineR-0.6.2/polmineR/inst/doc/vignette.pdf |binary polmineR-0.6.2/polmineR/man/as.DocumentTermMatrix.Rd | 14 polmineR-0.6.2/polmineR/man/as.speeches-method.Rd | 22 + polmineR-0.6.2/polmineR/man/blapply.Rd | 19 - polmineR-0.6.2/polmineR/man/compare-method.Rd | 36 +- polmineR-0.6.2/polmineR/man/context-class.Rd | 7 polmineR-0.6.2/polmineR/man/context-method.Rd | 11 polmineR-0.6.2/polmineR/man/cooccurrences.Rd | 5 polmineR-0.6.2/polmineR/man/cooccurrencesBundle-class.Rd | 2 polmineR-0.6.2/polmineR/man/count-method.Rd | 19 - polmineR-0.6.2/polmineR/man/cpos-method.Rd | 12 polmineR-0.6.2/polmineR/man/cqp.Rd |only polmineR-0.6.2/polmineR/man/dispersion-method.Rd | 27 + polmineR-0.6.2/polmineR/man/divide.Rd |only polmineR-0.6.2/polmineR/man/hits.Rd | 18 - polmineR-0.6.2/polmineR/man/kwic.Rd | 22 - polmineR-0.6.2/polmineR/man/ngrams.Rd | 26 + polmineR-0.6.2/polmineR/man/partition.Rd | 20 + polmineR-0.6.2/polmineR/man/partitionBundle-method.Rd | 58 +-- polmineR-0.6.2/polmineR/man/polmineR-package.Rd | 7 53 files changed, 928 insertions(+), 880 deletions(-)
Title: Functions and Datasets to Accompany Hollander, Wolfe, and
Chicken - Nonparametric Statistical Methods, Third Edition
Description: Designed to replace the tables which were in the back of the first two editions of Hollander and Wolfe - Nonparametric Statistical Methods. Exact procedures are performed when computationally possible. Monte Carlo and Asymptotic procedures are performed otherwise. For those procedures included in the base packages, our code simply provides a wrapper to standardize the output with the other procedures in the package.
Author: Grant Schneider, Eric Chicken, Rachel Becvarik
Maintainer: Grant Schneider <schneider.393@osu.edu>
Diff between NSM3 versions 1.6 dated 2016-07-31 and 1.7 dated 2016-09-07
DESCRIPTION | 8 - MD5 | 6 - R/cFrd.R | 254 ++++++++++++++++++++++++++++++------------------------------ man/cFrd.Rd | 106 ++++++++++++------------- 4 files changed, 191 insertions(+), 183 deletions(-)
Title: Efficient Network Enrichment Analysis Test
Description: Includes functions and examples to compute NEAT, a network-based test for gene enrichment analysis (Signorelli, Vinciotti and Wit, 2016, <DOI:10.1186/s12859-016-1203-6>).
Author: Mirko Signorelli, Veronica Vinciotti and Ernst C. Wit
Maintainer: Mirko Signorelli <m.signorelli@rug.nl>
Diff between neat versions 0.2 dated 2016-08-06 and 1.0 dated 2016-09-07
DESCRIPTION | 13 ++++++++----- MD5 | 24 ++++++++++++------------ inst/CITATION | 10 +++++----- inst/doc/neat.Rmd | 31 +++++++++++++++++++++---------- inst/doc/neat.html | 28 ++++++++++++++++++---------- man/neat-package.Rd | 2 +- man/neat.Rd | 2 +- man/networkmatrix.Rd | 2 +- man/plot.neat.Rd | 2 +- man/print.neat.Rd | 2 +- man/summary.neat.Rd | 2 +- man/yeast.Rd | 8 ++++---- vignettes/neat.Rmd | 31 +++++++++++++++++++++---------- 13 files changed, 95 insertions(+), 62 deletions(-)
Title: A Colour Picker Widget for Shiny Apps, RStudio, R-markdown, and
'htmlwidgets'
Description: A colour picker that can be used as an input in Shiny apps
or R-markdown documents. A colour picker RStudio addin is provided to let
you select colours for use in your R code. The colour picker is also
available as an 'htmlwidgets' widget.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between colourpicker versions 0.1 dated 2016-08-13 and 0.2 dated 2016-09-07
DESCRIPTION | 8 ++--- MD5 | 25 +++++++++++------ NAMESPACE | 1 NEWS.md | 14 ++++++++++ R/colourPickerGadget.R | 16 ++++++----- R/globals.R |only R/runExample.R |only build |only inst/doc |only inst/examples/colourInput/app.R | 2 - inst/htmlwidgets/colourWidget.yaml | 2 - inst/www/shared/colourpicker/js/colourpicker.js | 9 +++--- inst/www/shared/colourpicker/js/colourpicker.min.js | 3 +- man/runExample.Rd |only vignettes/overview.Rmd | 28 +++++++++++++++----- 15 files changed, 75 insertions(+), 33 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-03 0.9.8
2014-04-22 0.9.06