Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-19 0.4.8
2016-03-24 0.4.7
2016-03-20 0.4.6
2015-12-21 0.4.5
2015-07-30 0.4.4
2015-04-03 0.4.3
2014-05-14 0.4-1
2013-08-08 0.3-11
2013-05-26 0.3-10
2013-05-22 0.3-9
2012-09-09 0.3-8
2012-03-31 0.3-6
2012-03-02 0.3-5
2011-09-05 0.3-4
2011-05-05 0.3-3
2011-03-12 0.3-2
2011-01-30 0.3-1
2011-01-04 0.2-9
2010-10-09 0.2-8
2010-08-18 0.2-5
2010-02-18 0.2-2
Title: Easy Handling Discrete Time Markov Chains
Description: Functions and S4 methods to create and manage discrete time Markov
chains (DTMC) more easily. In addition functions to perform statistical (fitting
and drawing random variates) and probabilistic (analysis of DTMC proprieties)
analysis are provided.
Author: Giorgio Alfredo Spedicato [aut,cre], Tae Seung Kang [aut], Sai Bhargav
Yalamanchi [aut], Mildenberger Thoralf [ctb], Deepak Yadav [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between markovchain versions 0.6.5 dated 2016-08-29 and 0.6.5.1 dated 2016-09-08
markovchain-0.6.5.1/markovchain/DESCRIPTION | 8 markovchain-0.6.5.1/markovchain/MD5 | 20 markovchain-0.6.5.1/markovchain/NEWS | 4 markovchain-0.6.5.1/markovchain/R/RcppExports.R | 2 markovchain-0.6.5.1/markovchain/inst/doc/an_introduction_to_markovchain_package.pdf |binary markovchain-0.6.5.1/markovchain/inst/doc/complicateSteadyStates.pdf |binary markovchain-0.6.5.1/markovchain/inst/doc/markovchainCrashIntro.pdf |binary markovchain-0.6.5.1/markovchain/src/Makevars | 2 markovchain-0.6.5.1/markovchain/src/Makevars.win | 1 markovchain-0.6.5.1/markovchain/src/RcppExports.cpp | 210 +++++----- markovchain-0.6.5/markovchain/vignettes/an_introduction_to_markovchain_package-mcPlot.pdf |only markovchain-0.6.5/markovchain/vignettes/an_introduction_to_markovchain_package-mcPlotdiagram.pdf |only 12 files changed, 123 insertions(+), 124 deletions(-)
Title: Identify Global Objects in R Expressions
Description: Identifies global ("unknown") objects in R expressions by code
inspection using various strategies, e.g. conservative or liberal. The objective
of this package is to make it as simple as possible to identify global objects
for the purpose of exporting them in distributed compute environments.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between globals versions 0.6.1 dated 2016-02-03 and 0.7.0 dated 2016-09-08
globals-0.6.1/globals/README.md |only globals-0.7.0/globals/DESCRIPTION | 6 - globals-0.7.0/globals/MD5 | 29 +++-- globals-0.7.0/globals/NAMESPACE | 6 + globals-0.7.0/globals/NEWS | 8 + globals-0.7.0/globals/R/Globals-class.R | 141 ++++++++++++++++++++++++++- globals-0.7.0/globals/R/cleanup.R | 9 + globals-0.7.0/globals/R/globalsOf.R | 45 ++++++++ globals-0.7.0/globals/R/utils.R | 4 globals-0.7.0/globals/R/walkAST.R |only globals-0.7.0/globals/man/Globals.Rd | 1 globals-0.7.0/globals/man/cleanup.Globals.Rd | 2 globals-0.7.0/globals/man/globalsByName.Rd |only globals-0.7.0/globals/man/walkAST.Rd |only globals-0.7.0/globals/tests/Globals.R |only globals-0.7.0/globals/tests/globalsOf.R | 73 ++++++++++++- globals-0.7.0/globals/tests/utils.R | 28 ++++- globals-0.7.0/globals/tests/walkAST.R |only globals-0.7.0/globals/tests/zzz.R |only 19 files changed, 313 insertions(+), 39 deletions(-)
Title: Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Description: Functions to automate downloading geospatial data available from
several federated data sources (mainly sources maintained by the US Federal
government). Currently, the package allows for retrieval of five datasets:
The National Elevation Dataset digital elevation models (1 and 1/3 arc-second;
USGS); The National Hydrography Dataset (USGS); The Soil Survey Geographic
(SSURGO) database from the National Cooperative Soil Survey (NCSS), which is
led by the Natural Resources Conservation Service (NRCS) under the USDA; the
Global Historical Climatology Network (GHCN), coordinated by National Climatic
Data Center at NOAA; and the International Tree Ring Data Bank. Additional
data sources are in the works, including global DEM resources (ETOPO1, ETOPO5,
ETOPO30, SRTM), global soils (HWSD), MODIS satellite data products, the National
Atlas (US), Natural Earth, PRISM, and WorldClim.
Author: R. Kyle Bocinsky [aut, cre], Dylan Beaudette [ctb], Scott Chamberlain [ctb]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>
Diff between FedData versions 2.0.9 dated 2016-08-17 and 2.0.10 dated 2016-09-08
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/NHD_FUNCTIONS.R | 23 +++++++---------------- inst/CITATION | 6 +++--- man/FedData-package.Rd | 4 ++-- man/download_nhd_subregion.Rd | 5 +---- man/get_nhd.Rd | 5 +---- man/get_nhd_subregion.Rd | 5 +---- 8 files changed, 26 insertions(+), 44 deletions(-)
Title: High-Performance Stemmer, Tokenizer, and Spell Checker for R
Description: A spell checker and morphological analyzer library designed for
languages with rich morphology and complex word compounding or character
encoding. The package can check and analyze individual words as well as
search for incorrect words within a text, latex, html or xml document. Use
the 'devtools' package to spell check R documentation with 'hunspell'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between hunspell versions 1.4.3 dated 2016-07-27 and 2.0 dated 2016-09-08
DESCRIPTION | 16 +++-- MD5 | 62 +++++++++++---------- NAMESPACE | 2 NEWS | 5 + R/RcppExports.R | 34 ++++++----- R/hunspell.R | 107 ++++++++++++++++++++++++++---------- README.md | 10 +-- build |only inst/doc |only man/hunspell.Rd | 34 +++++++---- src/Makevars | 2 src/RcppExports.cpp | 118 +++++++++++++++++++++------------------- src/check.cpp | 74 ++++++++++--------------- src/find.cpp | 32 ++++------ src/hunspell/hashmgr.cc | 6 +- src/hunspell/hunspell.cc | 5 - src/hunspell/hunspell.hxx | 1 src/hunspell/suggestmgr.cc | 1 src/hunspell_types.h |only src/parsers/firstparser.cc | 4 - src/parsers/htmlparser.cc | 8 +- src/parsers/latexparser.cc | 8 +- src/parsers/manparser.cc | 10 +-- src/parsers/manparser.hxx | 1 src/parsers/odfparser.cc | 8 +- src/parsers/testparser.cc | 2 src/parsers/textparser.cc | 4 - src/parsers/textparser.hxx | 6 +- src/parsers/xmlparser.cc | 15 +---- src/parsers/xmlparser.hxx | 1 src/utils.h | 26 ++++++-- tests/testthat/test_encodings.R | 9 +++ vignettes |only 33 files changed, 343 insertions(+), 268 deletions(-)
Title: Kernel k Nearest Neighbors
Description: Extends the simple k-nearest neighbors algorithm by incorporating numerous kernel functions and a variety of distance metrics. The package takes advantage of 'RcppArmadillo' to speed up the calculation of distances between observations.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between KernelKnn versions 1.0.1 dated 2016-07-11 and 1.0.2 dated 2016-09-08
DESCRIPTION | 12 MD5 | 30 - NEWS.md | 7 R/kernelknnCV.R | 2 README.md | 6 build/vignette.rds |binary inst/doc/binary_classification_using_the_ionosphere_data.Rmd | 2 inst/doc/binary_classification_using_the_ionosphere_data.html | 174 +++++----- inst/doc/image_classification_using_MNIST_CIFAR_data.R | 8 inst/doc/image_classification_using_MNIST_CIFAR_data.Rmd | 10 inst/doc/image_classification_using_MNIST_CIFAR_data.html | 116 +++--- inst/doc/regression_using_the_housing_data.html | 128 ++++--- src/Makevars.win | 4 src/distance_metrics.cpp | 74 ++-- vignettes/binary_classification_using_the_ionosphere_data.Rmd | 2 vignettes/image_classification_using_MNIST_CIFAR_data.Rmd | 10 16 files changed, 333 insertions(+), 252 deletions(-)
Title: Feature Set Enrichment Analysis for Metabolomics and
Transcriptomics
Description: Methods and feature set definitions for feature or gene set
enrichment analysis in transcriptional and metabolic profiling data.
Package includes tests for enrichment based on ranked lists of features,
functions for visualisation and multivariate functional analysis.
Author: January Weiner
Maintainer: January Weiner <january.weiner@gmail.com>
Diff between tmod versions 0.30 dated 2016-08-05 and 0.31 dated 2016-09-08
tmod-0.30/tmod/R/plotwidgets.R |only tmod-0.30/tmod/man/simplePie.Rd |only tmod-0.31/tmod/DESCRIPTION | 10 +++++----- tmod-0.31/tmod/MD5 | 18 ++++++++---------- tmod-0.31/tmod/NAMESPACE | 4 +--- tmod-0.31/tmod/NEWS | 3 +++ tmod-0.31/tmod/R/panelplots.R | 11 ++++++----- tmod-0.31/tmod/R/visualizations.R | 2 -- tmod-0.31/tmod/inst/doc/tmod.pdf |binary tmod-0.31/tmod/man/pvalEffectPlot.Rd | 2 +- tmod-0.31/tmod/tests/testthat.R | 1 - 11 files changed, 24 insertions(+), 27 deletions(-)
Title: Generalized Autoregressive Score Models
Description: Simulate, estimate and forecast using univariate and multivariate GAS models.
Author: Leopoldo Catania [aut,cre], Kris Boudt [ctb], David Ardia [ctb]
Maintainer: Leopoldo Catania <leopoldo.catania@uniroma2.it>
Diff between GAS versions 0.1.3 dated 2016-09-01 and 0.1.4 dated 2016-09-08
GAS-0.1.3/GAS/inst/doc/GAS_vignette_0.1.1.Rnw |only GAS-0.1.3/GAS/inst/doc/GAS_vignette_0.1.1.pdf |only GAS-0.1.3/GAS/vignettes/GAS_vignette_0.1.1.Rnw |only GAS-0.1.4/GAS/DESCRIPTION | 6 - GAS-0.1.4/GAS/MD5 | 28 ++++---- GAS-0.1.4/GAS/NAMESPACE | 2 GAS-0.1.4/GAS/build/partial.rdb |binary GAS-0.1.4/GAS/build/vignette.rds |binary GAS-0.1.4/GAS/inst/doc/AddNewDistribution.pdf |binary GAS-0.1.4/GAS/inst/doc/GAS_vignette_0.1.4.Rnw |only GAS-0.1.4/GAS/inst/doc/GAS_vignette_0.1.4.pdf |only GAS-0.1.4/GAS/man/GAS-package.Rd | 4 - GAS-0.1.4/GAS/man/MultiGASFor.Rd | 3 GAS-0.1.4/GAS/man/UniGASFor.Rd | 3 GAS-0.1.4/GAS/src/Filters.cpp | 80 ++++++++++++------------- GAS-0.1.4/GAS/src/mvnorm.h | 1 GAS-0.1.4/GAS/vignettes/CumLogScore_Multi.pdf |binary GAS-0.1.4/GAS/vignettes/GAS_vignette_0.1.4.Rnw |only 18 files changed, 66 insertions(+), 61 deletions(-)
Title: Access WHO Global Health Observatory Data from R
Description: Access WHO Global Health Observatory
data from R via the Athena web service,
an application program interface providing
a simple query interface to the World
Health Organization's data and statistics content.
Author: Antoine Filipovic-Pierucci [aut,cre]
Maintainer: Antoine Filipovic-Pierucci <pierucci@gmail.com>
Diff between rgho versions 0.2.0 dated 2016-09-03 and 0.2.1 dated 2016-09-08
rgho-0.2.0/rgho/R/get_attrs.R |only rgho-0.2.0/rgho/R/get_codes.R |only rgho-0.2.0/rgho/R/get_dimensions.R |only rgho-0.2.0/rgho/man/get_attrs_.Rd |only rgho-0.2.1/rgho/DESCRIPTION | 12 rgho-0.2.1/rgho/MD5 | 64 rgho-0.2.1/rgho/NAMESPACE | 10 rgho-0.2.1/rgho/NEWS.md | 13 rgho-0.2.1/rgho/R/build_gho.R | 6 rgho-0.2.1/rgho/R/filter.R | 1 rgho-0.2.1/rgho/R/get_data.R | 5 rgho-0.2.1/rgho/R/get_gho.R | 8 rgho-0.2.1/rgho/R/get_object.R |only rgho-0.2.1/rgho/R/proxy.R | 2 rgho-0.2.1/rgho/R/rgho.R | 21 rgho-0.2.1/rgho/R/utils.R | 28 rgho-0.2.1/rgho/R/zzz.R |only rgho-0.2.1/rgho/README.md | 17 rgho-0.2.1/rgho/build/vignette.rds |binary rgho-0.2.1/rgho/inst/doc/a-intro.Rmd | 4 rgho-0.2.1/rgho/inst/doc/a-intro.html | 173 rgho-0.2.1/rgho/inst/doc/b-dimensions.html | 450 - rgho-0.2.1/rgho/inst/doc/c-codes-gho.html | 8866 +++++++++++------------ rgho-0.2.1/rgho/inst/doc/d-codes-country.html | 4 rgho-0.2.1/rgho/inst/doc/e-details.R |only rgho-0.2.1/rgho/inst/doc/e-details.Rmd |only rgho-0.2.1/rgho/inst/doc/e-details.html |only rgho-0.2.1/rgho/inst/xml.R |only rgho-0.2.1/rgho/man/get_gho_.Rd | 5 rgho-0.2.1/rgho/man/get_gho_codes.Rd | 2 rgho-0.2.1/rgho/man/get_gho_dimensions.Rd | 2 rgho-0.2.1/rgho/man/rgho.Rd | 10 rgho-0.2.1/rgho/tests/testthat/test-build_gho.R | 3 rgho-0.2.1/rgho/tests/testthat/test-filter.R | 20 rgho-0.2.1/rgho/tests/testthat/test-main.R | 86 rgho-0.2.1/rgho/tests/testthat/test-proxy_list.R |only rgho-0.2.1/rgho/tests/testthat/test-search.R | 19 rgho-0.2.1/rgho/vignettes/a-intro.Rmd | 4 rgho-0.2.1/rgho/vignettes/e-details.Rmd |only 39 files changed, 5010 insertions(+), 4825 deletions(-)
Title: Multinomial Processing Tree Models
Description: Fitting and testing multinomial processing tree (MPT) models, a
class of statistical models for categorical data. The parameters are the
link probabilities of a tree-like graph and represent the latent cognitive
processing steps executed to arrive at observable response categories
(Batchelder & Riefer, 1999 <doi:10.3758/bf03210812>; Erdfelder et al., 2009
<doi:10.1027/0044-3409.217.3.108>; Riefer & Batchelder, 1988
<doi:10.1037/0033-295x.95.3.318>).
Author: Florian Wickelmaier [aut, cre],
Achim Zeileis [aut]
Maintainer: Florian Wickelmaier <wickelmaier@web.de>
Diff between mpt versions 0.5-3 dated 2016-04-13 and 0.5-4 dated 2016-09-08
ChangeLog | 11 ++++++++++- DESCRIPTION | 17 +++++++++-------- MD5 | 37 ++++++++++++++++++++----------------- NAMESPACE | 2 +- R/mpt.R | 6 +++--- build |only data/citysize.rda |only data/proact.rda |binary data/prospecMemory.rda |binary data/recogROC.rda |binary data/retroact.rda |binary man/citysize.Rd |only man/mpt.Rd | 5 ++++- man/mptEM.Rd | 2 ++ man/mptspec.Rd | 11 ++++++++++- man/proact.Rd | 1 + man/prospecMemory.Rd | 3 ++- man/recogROC.Rd | 7 ++++--- man/retroact.Rd | 1 + man/valence.Rd | 4 ++-- man/vcov.mpt.Rd | 3 +++ 21 files changed, 72 insertions(+), 38 deletions(-)
Title: Robust Geostatistical Analysis of Spatial Data
Description: Provides functions for efficiently fitting linear models with
spatially correlated errors by robust and Gaussian (Restricted)
Maximum Likelihood and for computing robust and customary point
and block external-drift Kriging predictions, along with utility
functions for variogram modelling in ad hoc geostatistical analyses,
model building, model evaluation by cross-validation and for
unbiased back-transformation of Kriging predictions of
log-transformed data.
Author: Andreas Papritz [cre, aut],
Cornelia Schwierz [ctb]
Maintainer: Andreas Papritz <andreas.papritz@env.ethz.ch>
Diff between georob versions 0.2-4 dated 2016-07-26 and 0.3-0 dated 2016-09-08
ChangeLog | 20 DESCRIPTION | 20 MD5 | 60 NAMESPACE | 20 NEWS | 3 R/georob.S3methods.R | 1126 +++----- R/georob.cv.R | 1348 ++++------ R/georob.exported.functions.R | 738 +++-- R/georob.lgnpp.R | 506 +-- R/georob.predict.R | 1514 +++++------ R/georob.private.functions.R | 5599 ++++++++++++++++++++++++------------------ R/variogram.R | 1576 +++++++---- demo/georob_example.R | 31 inst/doc/georob_vignette.R | 254 - inst/doc/georob_vignette.Rnw | 384 +- inst/doc/georob_vignette.pdf |binary man/control.georob.Rd | 6 man/cv.georob.Rd | 149 - man/fit.variogram.model.Rd | 31 man/georob-package.Rd | 28 man/georob.Rd | 46 man/georobObject.Rd | 74 man/internal.functions.Rd | 98 man/lgnpp.Rd | 42 man/pmm.Rd | 4 man/predict.georob.Rd | 28 man/profilelogLik.Rd | 8 man/sample.variogram.Rd | 6 man/validate.predictions.Rd | 11 vignettes/georob.bib | 6 vignettes/georob_vignette.Rnw | 384 +- 31 files changed, 7549 insertions(+), 6571 deletions(-)
Title: Methods for Taxonomic Classification of Prokaryotes
Description: Functions for assigning 16S sequence data to a
taxonomic level in the tree-of-life for prokaryotes.
Author: Kristian Hovde Liland, Hilde Vinje, Lars Snipen
Maintainer: Lars Snipen <lars.snipen@nmbu.no>
Diff between microclass versions 1.0 dated 2016-08-15 and 1.0.1 dated 2016-09-08
microclass-1.0.1/microclass/DESCRIPTION | 11 microclass-1.0.1/microclass/MD5 | 41 +-- microclass-1.0.1/microclass/R/RcppExports.R | 60 ----- microclass-1.0.1/microclass/R/microclass-package.R | 4 microclass-1.0.1/microclass/R/multinom.R | 104 -------- microclass-1.0.1/microclass/R/rdpClassifier.R | 5 microclass-1.0.1/microclass/R/taxMachine.R | 4 microclass-1.0.1/microclass/inst/extdata/contax.trim.rda |only microclass-1.0.1/microclass/man/microclass-package.Rd | 4 microclass-1.0.1/microclass/man/multinomClassify.Rd | 30 -- microclass-1.0.1/microclass/man/rdpClassify.Rd | 5 microclass-1.0.1/microclass/src/KmerCount.cpp | 9 microclass-1.0.1/microclass/src/Makevars | 3 microclass-1.0.1/microclass/src/Makevars.win | 2 microclass-1.0.1/microclass/src/RcppExports.cpp | 177 --------------- microclass-1.0.1/microclass/src/charToInt.cpp | 1 microclass-1.0.1/microclass/src/multinomClassify.cpp | 17 - microclass-1.0.1/microclass/src/multinomTrainCpp.cpp | 35 +- microclass-1.0.1/microclass/src/pow4int.cpp |only microclass-1.0.1/microclass/src/pow4inthead.h |only microclass-1.0.1/microclass/src/rdpClassifyCpp.cpp | 19 - microclass-1.0.1/microclass/src/rdpTrainCpp.cpp | 21 - microclass-1.0/microclass/R/crossprodQ.R |only microclass-1.0/microclass/src/crossprodRcpp.cpp |only 24 files changed, 108 insertions(+), 444 deletions(-)
Title: Multivariate-from-Univariate (MfU) MCMC Sampler
Description: Convenience functions for multivariate MCMC using univariate samplers including:
slice sampler with stepout and shrinkage (Neal (2003) <DOI:10.1214/aos/1056562461>),
adaptive rejection sampler (Gilks and Wild (1992) <DOI:10.2307/2347565>),
adaptive rejection Metropolis (Gilks et al (1995) <DOI:10.2307/2986138>), and
univariate Metropolis with Gaussian proposal.
Author: Alireza S. Mahani, Mansour T.A. Sharabiani
Maintainer: Alireza S. Mahani <alireza.s.mahani@gmail.com>
Diff between MfUSampler versions 1.0.0 dated 2015-08-13 and 1.0.2 dated 2016-09-08
ChangeLog | 6 ++++++ DESCRIPTION | 16 ++++++++-------- MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/MfUSampler.pdf |binary 5 files changed, 18 insertions(+), 12 deletions(-)
Title: Bayesian Mixture Survival Models using Additive
Mixture-of-Weibull Hazards, with Lasso Shrinkage and
Stratification
Description: Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and
Stratification. As a Bayesian dynamic survival model, it relaxes the proportional-hazard assumption. Lasso shrinkage controls
overfitting, given the increase in the number of free parameters in the model due to presence of two Weibull components
in the hazard function.
Author: Alireza S. Mahani, Mansour T.A. Sharabiani
Maintainer: Alireza S. Mahani <alireza.s.mahani@gmail.com>
Diff between BayesMixSurv versions 0.9 dated 2014-10-25 and 0.9.1 dated 2016-09-08
ChangeLog |only DESCRIPTION | 15 +++++++++------ MD5 | 5 +++-- NAMESPACE | 9 +++++++++ 4 files changed, 21 insertions(+), 8 deletions(-)
Title: Structured Trellis Displays Without Strips for Lattice Graphics
Description: For making Trellis-type conditioning plots without strip labels.
This is useful for displaying the structure of results from factorial designs
and other studies when many conditioning variables would clutter the display
with layers of redundant strip labels. Settings of the variables are encoded by
layout and spacing in the trellis array and decoded by a separate legend. The
functionality is implemented by a single S3 generic strucplot() function that
is a wrapper for the Lattice package's xyplot() function. This allows access to
all Lattice graphics capabilities in the usual way.
Author: Bert Gunter [aut, cre]
Maintainer: Bert Gunter <bgunter@comcast.net>
Diff between stripless versions 1.0-1 dated 2016-02-08 and 1.0-2 dated 2016-09-08
stripless-1.0-1/stripless/R/stripless-package.R |only stripless-1.0-1/stripless/R/strucUtils.R |only stripless-1.0-1/stripless/R/xyLayout.R |only stripless-1.0-1/stripless/man/strucUtils.Rd |only stripless-1.0-1/stripless/man/xyLayout.Rd |only stripless-1.0-2/stripless/DESCRIPTION | 11 - stripless-1.0-2/stripless/MD5 | 38 +++-- stripless-1.0-2/stripless/NAMESPACE | 4 stripless-1.0-2/stripless/NEWS |only stripless-1.0-2/stripless/R/displayStruc.R |only stripless-1.0-2/stripless/R/main.R | 108 ++++++++------ stripless-1.0-2/stripless/R/print.structured.R | 151 +++++++++++-------- stripless-1.0-2/stripless/R/stripless-internal.R |only stripless-1.0-2/stripless/R/stripless.R |only stripless-1.0-2/stripless/R/strucLegends.R | 152 +++++++++----------- stripless-1.0-2/stripless/R/strucParseFormula.R | 2 stripless-1.0-2/stripless/build |only stripless-1.0-2/stripless/inst |only stripless-1.0-2/stripless/man/defaultStrucLegend.Rd | 99 +++++++------ stripless-1.0-2/stripless/man/displayStruc.Rd |only stripless-1.0-2/stripless/man/print.structured.Rd | 126 ++++++++++------ stripless-1.0-2/stripless/man/stripless-internal.Rd |only stripless-1.0-2/stripless/man/stripless-package.Rd | 11 - stripless-1.0-2/stripless/man/strucplot.Rd | 67 +++++--- stripless-1.0-2/stripless/vignettes |only 25 files changed, 436 insertions(+), 333 deletions(-)
Title: Stochastic Newton Sampler (SNS)
Description: Stochastic Newton Sampler (SNS) is a Metropolis-Hastings-based, Markov Chain Monte Carlo sampler for twice differentiable, log-concave probability density functions (PDFs) where the proposal density function is a multivariate Gaussian resulting from a second-order Taylor-series expansion of log-density around the current point. The mean of the Gaussian proposal is the full Newton-Raphson step from the current point. A Boolean flag allows for switching from SNS to Newton-Raphson optimization (by choosing the mean of proposal function as next point). This can be used during burn-in to get close to the mode of the PDF (which is unique due to concavity). For high-dimensional densities, mixing can be improved via 'state space partitioning' strategy, in which SNS is applied to disjoint subsets of state space, wrapped in a Gibbs cycle. Numerical differentiation is available when analytical expressions for gradient and Hessian are not available. Facilities for validation and numerical differentiation of log-density are provided.
Author: Alireza S. Mahani, Asad Hasan, Marshall Jiang, Mansour T.A. Sharabiani
Maintainer: Alireza Mahani <alireza.s.mahani@gmail.com>
Diff between sns versions 1.1.0 dated 2015-07-29 and 1.1.1 dated 2016-09-08
ChangeLog | 49 ++++++++++++++++++++++++++----------------------- DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/SNS.pdf |binary 5 files changed, 35 insertions(+), 32 deletions(-)
Title: Expander Functions for Generating Full Gradient and Hessian from
Single-Slot and Multi-Slot Base Distributions
Description: The expander functions rely on the mathematics developed for the Hessian-definiteness invariance theorem for linear projection transformations of variables, described in authors' paper, to generate the full, high-dimensional gradient and Hessian from the lower-dimensional derivative objects. This greatly relieves the computational burden of generating the regression-function derivatives, which in turn can be fed into any optimization routine that utilizes such derivatives. The theorem guarantees that Hessian definiteness is preserved, meaning that reasoning about this property can be performed in the low-dimensional space of the base distribution. This is often a much easier task than its equivalent in the full, high-dimensional space. Definiteness of Hessian can be useful in selecting optimization/sampling algorithms such as Newton-Raphson optimization or its sampling equivalent, the Stochastic Newton Sampler. Finally, in addition to being a computational tool, the regression expansion framework is of conceptual value by offering new opportunities to generate novel regression problems.
Author: Alireza S. Mahani, Mansour T.A. Sharabiani
Maintainer: Alireza S. Mahani <alireza.s.mahani@gmail.com>
Diff between RegressionFactory versions 0.7.1 dated 2015-01-25 and 0.7.2 dated 2016-09-08
ChangeLog | 4 ++++ DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 3 +-- build/vignette.rds |binary inst/doc/RegressionFactory.pdf |binary 6 files changed, 16 insertions(+), 13 deletions(-)
More information about RegressionFactory at CRAN
Permanent link
Title: Toolkit for Item Factor Analysis with 'OpenMx'
Description: Tools, tutorials, and demos of Item Factor Analysis using 'OpenMx'.
Author: Joshua N. Pritikin [cre, aut]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between ifaTools versions 0.11 dated 2016-07-25 and 0.13 dated 2016-09-08
DESCRIPTION | 12 +- MD5 | 8 - inst/doc/pritikin-schmidt.Rnw | 183 ++++++++++++++++++++--------------------- inst/doc/pritikin-schmidt.pdf |binary vignettes/pritikin-schmidt.Rnw | 183 ++++++++++++++++++++--------------------- 5 files changed, 194 insertions(+), 192 deletions(-)
Title: Foreach Parallel Adaptor using the Future API of the 'future'
Package
Description: Provides a '%dopar%' adaptor such that any type of futures can
be used as backends for the 'foreach' framework.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between doFuture versions 0.2.0 dated 2016-06-25 and 0.2.1 dated 2016-09-08
DESCRIPTION | 8 +++---- MD5 | 15 +++++++------ NEWS | 5 ++++ R/doFuture.R | 5 +--- inst/doc/doFuture.html | 22 +++++++++---------- inst/doc/doFuture.md.rsp | 52 +++++----------------------------------------- man/doFuture.Rd | 2 - tests/foreach,nested.R |only vignettes/doFuture.md.rsp | 52 +++++----------------------------------------- 9 files changed, 43 insertions(+), 118 deletions(-)
Title: Categorical Data Analysis Program Package
Description: Categorical data analysis program package.
Author: The Institute of Statistical Mathematics
Maintainer: Masami Saga <msaga@mtb.biglobe.ne.jp>
Diff between catdap versions 1.2.2 dated 2016-02-17 and 1.2.4 dated 2016-09-08
DESCRIPTION | 6 MD5 | 16 R/catdap.R | 266 ++++++++++------ data/HealthData.rda |binary data/HelloGoodbye.rda |binary data/JNcharacter.rda |binary man/catdap2.Rd | 8 src/catdap1f.f | 129 ++++--- src/catdap2mf.f | 828 ++++++++++++++++++++++++++++++-------------------- 9 files changed, 771 insertions(+), 482 deletions(-)