Tue, 13 Sep 2016

Package tableHTML updated to version 0.2.12 with previous version 0.2.11 dated 2016-08-03

Title: A Tool to Create HTML Tables
Description: A tool to easily create and style HTML tables, which are compatible with shiny.
Author: Theo Boutaris [aut, cre, cph]
Maintainer: Theo Boutaris <teoboot2007@hotmail.com>

Diff between tableHTML versions 0.2.11 dated 2016-08-03 and 0.2.12 dated 2016-09-13

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New package shinyLP with initial version 1.0.0
Package: shinyLP
Type: Package
Title: Bootstrap Landing Home Pages for Shiny Applications
Version: 1.0.0
Author: Authors@R: person("Jasmine", "Dumas", email = "jasmine.dumas@gmail.com", role = c("aut", "cre"))
Maintainer: Jasmine Dumas <jasmine.dumas@gmail.com>
Description: Provides functions that wrap HTML Bootstrap components code to enable the design and layout of informative landing home pages for Shiny applications. This can lead to a better user experience for the users and writing less HTML for the developer.
URL: https://github.com/jasdumas/shinyLP
Depends: R (>= 3.1.2)
Imports: shinyBS, shiny
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-09-13 12:19:04 UTC; jasminedumas
Repository: CRAN
Date/Publication: 2016-09-13 21:19:28

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Package rstanarm updated to version 2.12.1 with previous version 2.11.1 dated 2016-07-29

Title: Bayesian Applied Regression Modeling via Stan
Description: Estimates pre-compiled regression models using the 'rstan' package, which provides the R interface to the Stan C++ library for Bayesian estimation. Users specify models via the customary R syntax with a formula and data.frame plus some additional arguments for priors.
Author: Jonah Gabry [aut], Trustees of Columbia University [cph], R Core Deveopment Team [cph] (R/stan_aov.R), Douglas Bates [cph] (R/pp_data.R), Martin Maechler [cph] (R/pp_data.R), Ben Bolker [cph] (R/pp_data.R), Steve Walker [cph] (R/pp_data.R), Brian Ripley [cph] (R/stan_aov.R, R/stan_polr.R), William Venables [cph] (R/stan_polr.R), Ben Goodrich [cre, aut]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>

Diff between rstanarm versions 2.11.1 dated 2016-07-29 and 2.12.1 dated 2016-09-13

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Package nonnest2 updated to version 0.4-1 with previous version 0.3 dated 2016-01-22

Title: Tests of Non-Nested Models
Description: Testing non-nested models via theory supplied by Vuong (1989) <DOI:10.2307/1912557>. Includes tests of model distinguishability and of model fit that can be applied to both nested and non-nested models. Also includes functionality to obtain confidence intervals associated with AIC and BIC. This material is based on work supported by the National Science Foundation under Grant Number SES-1061334.
Author: Edgar Merkle and Dongjun You
Maintainer: Edgar Merkle <merklee@missouri.edu>

Diff between nonnest2 versions 0.3 dated 2016-01-22 and 0.4-1 dated 2016-09-13

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Package NNS updated to version 0.2.1 with previous version 0.2.0 dated 2016-08-18

Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences.
Author: Fred Viole
Maintainer: Fred Viole <viole.nawrocki@gmail.com>

Diff between NNS versions 0.2.0 dated 2016-08-18 and 0.2.1 dated 2016-09-13

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Package mlt.docreg updated to version 0.0-33 with previous version 0.0-32 dated 2016-05-25

Title: Most Likely Transformations: Documentation and Regression Tests
Description: Additional documentation, a package vignette and regression tests for package mlt.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

Diff between mlt.docreg versions 0.0-32 dated 2016-05-25 and 0.0-33 dated 2016-09-13

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Package mlt updated to version 0.0-34 with previous version 0.0-33 dated 2016-05-25

Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation models via the most likely transformation approach.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

Diff between mlt versions 0.0-33 dated 2016-05-25 and 0.0-34 dated 2016-09-13

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Package mitml updated to version 0.3-4 with previous version 0.3-3 dated 2016-07-15

Title: Tools for Multiple Imputation in Multilevel Modeling
Description: Provides tools for multiple imputation of missing data in multilevel modeling. Includes a user-friendly interface to the packages 'pan' and 'jomo', and several functions for visualization, data management and the analysis of multiply imputed data sets.
Author: Simon Grund [aut,cre], Alexander Robitzsch [aut], Oliver Luedtke [aut]
Maintainer: Simon Grund <grund@ipn.uni-kiel.de>

Diff between mitml versions 0.3-3 dated 2016-07-15 and 0.3-4 dated 2016-09-13

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Package LEAP updated to version 0.2 with previous version 0.1 dated 2016-05-15

Title: Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering
Description: Advances in sequencing technology now allow researchers to capture the expression profiles of individual cells. Several algorithms have been developed to attempt to account for these effects by determining a cell's so-called `pseudotime', or relative biological state of transition. By applying these algorithms to single-cell sequencing data, we can sort cells into their pseudotemporal ordering based on gene expression. LEAP (Lag-based Expression Association for Pseudotime-series) then applies a time-series inspired lag-based correlation analysis to reveal linearly dependent genetic associations.
Author: Alicia T. Specht and Jun Li
Maintainer: Alicia T. Specht <aspecht2@nd.edu>

Diff between LEAP versions 0.1 dated 2016-05-15 and 0.2 dated 2016-09-13

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Package fastcmh updated to version 0.2.7 with previous version 0.2.5 dated 2016-09-07

Title: Significant Interval Discovery with Categorical Covariates
Description: A method which uses the Cochran-Mantel-Haenszel test with significant pattern mining to detect intervals in binary genotype data which are significantly associated with a particular phenotype, while accounting for categorical covariates.
Author: Felipe Llinares Lopez, Dean Bodenham
Maintainer: Dean Bodenham <deanbodenhambsse@gmail.com>

Diff between fastcmh versions 0.2.5 dated 2016-09-07 and 0.2.7 dated 2016-09-13

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Package EnsembleCV updated to version 0.8 with previous version 0.7.1 dated 2015-01-01

Title: Extensible Package for Cross-Validation-Based Integration of Base Learners
Description: Extends the base classes and methods of EnsembleBase package for cross-validation-based integration of base learners. Default implementation calculates average of repeated CV errors, and selects the base learner / configuration with minimum average error. The package takes advantage of the file method provided in EnsembleBase package for writing estimation objects to disk in order to circumvent RAM bottleneck. Special save and load methods are provided to allow estimation objects to be saved to permanent files on disk, and to be loaded again into temporary files in a later R session. The package can be extended, e.g. by adding variants of the current implementation.
Author: Mansour T.A. Sharabiani, Alireza S. Mahani
Maintainer: Alireza S. Mahani <alireza.s.mahani@gmail.com>

Diff between EnsembleCV versions 0.7.1 dated 2015-01-01 and 0.8 dated 2016-09-13

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 NAMESPACE                                 |    5 
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Package EnsembleBase updated to version 1.0.2 with previous version 1.0.1 dated 2016-02-11

Title: Extensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling
Description: Extensible S4 classes and methods for batch training of regression and classification algorithms such as Random Forest, Gradient Boosting Machine, Neural Network, Support Vector Machines, K-Nearest Neighbors, Penalized Regression (L1/L2), and Bayesian Additive Regression Trees. These algorithms constitute a set of 'base learners', which can subsequently be combined together to form ensemble predictions. This package provides cross-validation wrappers to allow for downstream application of ensemble integration techniques, including best-error selection. All base learner estimation objects are retained, allowing for repeated prediction calls without the need for re-training. For large problems, an option is provided to save estimation objects to disk, along with prediction methods that utilize these objects. This allows users to train and predict with large ensembles of base learners without being constrained by system RAM.
Author: Alireza S. Mahani, Mansour T.A. Sharabiani
Maintainer: Alireza S. Mahani <alireza.s.mahani@gmail.com>

Diff between EnsembleBase versions 1.0.1 dated 2016-02-11 and 1.0.2 dated 2016-09-13

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Package ctmcd updated to version 1.0 with previous version 0.9 dated 2016-08-16

Title: Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data
Description: Functions for estimating Markov generator matrices from discrete-time observations. The implemented approaches comprise diagonal adjustment, weighted adjustment and quasi-optimization of matrix logarithm based candidate solutions, an expectation-maximization algorithm as well as a Gibbs sampler.
Author: Marius Pfeuffer
Maintainer: Marius Pfeuffer <marius.pfeuffer@fau.de>

Diff between ctmcd versions 0.9 dated 2016-08-16 and 1.0 dated 2016-09-13

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Package cffdrs updated to version 1.7.5 with previous version 1.7.3 dated 2016-03-17

Title: Canadian Forest Fire Danger Rating System
Description: This project provides a group of new functions to calculate the outputs of the two main components of the Canadian Forest Fire Danger Rating System (CFFDRS) at various time scales: the Fire Weather Index (FWI) System and the Fire Behaviour Prediction (FBP) System. Some functions have two versions, table and raster based.
Author: Xianli Wang, Alan Cantin, Marc-Andre Parisien, Mike Wotton, Kerry Anderson, Brett Moore, and Mike Flannigan
Maintainer: Alan Cantin <Alan.Cantin@Canada.ca>

Diff between cffdrs versions 1.7.3 dated 2016-03-17 and 1.7.5 dated 2016-09-13

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New package CatEncoders with initial version 0.1.0
Package: CatEncoders
Type: Package
Title: Encoders for Categorical Variables
Version: 0.1.0
Author: nl zhang
Maintainer: nl zhang <setseed2016@gmail.com>
Description: Contains some commonly used categorical variable encoders, such as 'LabelEncoder' and 'OneHotEncoder'. Inspired by the encoders implemented in python 'sklearn.preprocessing' package (see <http://scikit-learn.org/stable/modules/preprocessing.html>).
License: GPL-2 | GPL-3
LazyData: TRUE
Imports: Matrix (>= 1.2-6), data.table (>= 1.9.6), methods
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-09-13 12:54:16 UTC; nl
Repository: CRAN
Date/Publication: 2016-09-13 21:19:03

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Package basefun updated to version 0.0-33 with previous version 0.0-32 dated 2016-05-30

Title: Infrastructure for Computing with Basis Functions
Description: Some very simple infrastructure for basis functions.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

Diff between basefun versions 0.0-32 dated 2016-05-30 and 0.0-33 dated 2016-09-13

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Package algorithmia updated to version 0.0.2 with previous version 0.0.1 dated 2016-08-29

Title: Allows you to Easily Interact with the Algorithmia Platform
Description: The company, Algorithmia, houses the largest marketplace of online algorithms. This package essentially holds a bunch of REST wrappers that make it very easy to call algorithms in the Algorithmia platform and access files and directories in the Algorithmia data API. To learn more about the services they offer and the algorithms in the platform visit <http://algorithmia.com>. More information for developers can be found at <http://developers.algorithmia.com>.
Author: James Athappilly
Maintainer: James Athappilly <jamesa@algorithmia.com>

Diff between algorithmia versions 0.0.1 dated 2016-08-29 and 0.0.2 dated 2016-09-13

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Package vardpoor updated to version 0.7.6 with previous version 0.7.4 dated 2016-09-05

Title: Variance Estimation for Sample Surveys by the Ultimate Cluster Method
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, 1953), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y.G.). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre], Martins Liberts [aut], Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>

Diff between vardpoor versions 0.7.4 dated 2016-09-05 and 0.7.6 dated 2016-09-13

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Package RXKCD updated to version 1.7-6 with previous version 1.7-5 dated 2012-12-23

Title: Get XKCD Comic from R
Description: Visualize your favorite XKCD comic strip directly from R. XKCD web comic content is provided under the Creative Commons Attribution-NonCommercial 2.5 License.
Author: Paolo Sonego [aut, cph, cre], Mikko Korpela [ctb]
Maintainer: Paolo Sonego <paolo.sonego@gmail.com>

Diff between RXKCD versions 1.7-5 dated 2012-12-23 and 1.7-6 dated 2016-09-13

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Package lifecourse updated to version 2.0 with previous version 1.0 dated 2016-04-17

Title: Quantification of Lifecourse Fluidity
Description: Provides in built datasets and three functions. These functions are mobility_index, nonStanTest and linkedLives. The mobility_index function facilitates the calculation of lifecourse fluidity, whilst the nonStanTest and the linkedLives functions allow the user to determine the probability that the observed sequence data was due to chance. The linkedLives function acknowledges the fact that some individuals may have identical sequences. The datasets available provide sequence data on marital status(maritalData) and mobility (mydata) for a selected group of individuals from the British Household Panel Study (BHPS). In addition, personal and house ID's for 100 individuals are provided in a third dataset (myHouseID) from the BHPS.
Author: Glenna Nightingale
Maintainer: Glenna Nightingale <glenna.evans@gmail.com>

Diff between lifecourse versions 1.0 dated 2016-04-17 and 2.0 dated 2016-09-13

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Package inctools updated to version 1.0.7 with previous version 1.0.5 dated 2016-05-26

Title: Incidence Estimation Tools
Description: Tools for estimating incidence from biomarker data in cross- sectional surveys and for calibrating tests for recent infection.
Author: Alex Welte [aut], Eduard Grebe [cre, aut], Avery McIntosh [aut], Petra Bäumler [aut], Reshma Kassanjee [ctb], Hilmarie Brand [ctb], Cari Van Schalkwyk [ctb], Yuruo Li [ctb], Simon Daniel [ctb], Stefano Ongarello [aut], Yusuke Asai [ctb]
Maintainer: Eduard Grebe <eduardgrebe@sun.ac.za>

Diff between inctools versions 1.0.5 dated 2016-05-26 and 1.0.7 dated 2016-09-13

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Package comf updated to version 0.1.5 with previous version 0.1.4 dated 2016-06-18

Title: Functions for Thermal Comfort Research
Description: Functions to calculate various common and less common thermal comfort indices, convert physical variables, and evaluate the performance of thermal comfort indices.
Author: Marcel Schweiker [aut, cre] and Sophia Mueller [aut] and Michael Kleber [ctr] and Boris Kingma [ctr] and Masanori Shukuya [ctr]
Maintainer: Marcel Schweiker <marcel.schweiker@kit.edu>

Diff between comf versions 0.1.4 dated 2016-06-18 and 0.1.5 dated 2016-09-13

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Package bizdays updated to version 1.0.1 with previous version 1.0.0 dated 2016-09-05

Title: Business Days Calculations and Utilities
Description: Business days calculations based on a list of holidays and nonworking weekdays. Quite useful for fixed income and derivatives pricing.
Author: Wilson Freitas <wilson.freitas@gmail.com>
Maintainer: Wilson Freitas <wilson.freitas@gmail.com>

Diff between bizdays versions 1.0.0 dated 2016-09-05 and 1.0.1 dated 2016-09-13

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Package asnipe updated to version 1.0 with previous version 0.91 dated 2016-05-22

Title: Animal Social Network Inference and Permutations for Ecologists
Description: Implements several tools that are used in animal social network analysis. In particular, this package provides the tools to infer groups and generate networks from observation data, perform permutation tests on the data, calculate lagged association rates, and performed multiple regression analysis on social network data.
Author: Damien R. Farine <dfarine@orn.mpg.de>
Maintainer: Damien R. Farine <dfarine@orn.mpg.de>

Diff between asnipe versions 0.91 dated 2016-05-22 and 1.0 dated 2016-09-13

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Package whoapi updated to version 0.1.2 with previous version 0.1.1 dated 2016-03-18

Title: A 'Whoapi' API Client
Description: Retrieve data from the 'Whoapi' (https://whoapi.com) store of domain information, including a domain's geographic location, registration status and search prominence.
Author: Oliver Keyes
Maintainer: Oliver Keyes <ironholds@gmail.com>

Diff between whoapi versions 0.1.1 dated 2016-03-18 and 0.1.2 dated 2016-09-13

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Package TUWmodel updated to version 0.1-8 with previous version 0.1-6 dated 2016-01-28

Title: Lumped Hydrological Model for Education Purposes
Description: The model, developed at the Vienna University of Technology, is a lumped conceptual rainfall-runoff model, following the structure of the HBV model. The model runs on a daily or shorter time step and consists of a snow routine, a soil moisture routine and a flow routing routine. See Parajka, J., R. Merz, G. Bloeschl (2007) Uncertainty and multiple objective calibration in regional water balance modelling: case study in 320 Austrian catchments, Hydrological Processes, 21, 435-446.
Author: Alberto Viglione [aut, cre], Juraj Parajka [aut]
Maintainer: Alberto Viglione <viglione@hydro.tuwien.ac.at>

Diff between TUWmodel versions 0.1-6 dated 2016-01-28 and 0.1-8 dated 2016-09-13

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New package spectral with initial version 1.0
Package: spectral
Type: Package
Title: Common Methods of Spectral Data Analysis
Version: 1.0
Author: Martin Seilmayer
Maintainer: Martin Seilmayer <m.seilmayer@hzdr.de>
Description: Fourier and Hilbert transforms are utilized to perform several types of spectral analysis on the supplied data. Also fragmented and irregularly spaced data can be processed. A user friendly interface helps to interpret the results.
License: GPL-2
Depends: rasterImage, R (>= 2.15.0)
LazyData: TRUE
RoxygenNote: 5.0.1
LinkingTo: Rcpp
Imports: Rcpp
Packaged: 2016-09-13 07:20:39 UTC; ms5760
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-09-13 11:45:38

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Package sourcetools updated to version 0.1.3 with previous version 0.1.2 dated 2016-03-04

Title: Tools for Reading, Tokenizing and Parsing R Code
Description: Tools for the reading and tokenization of R code. The 'sourcetools' package provides both an R and C++ interface for the tokenization of R code, and helpers for interacting with the tokenized representation of R code.
Author: Kevin Ushey
Maintainer: Kevin Ushey <kevinushey@gmail.com>

Diff between sourcetools versions 0.1.2 dated 2016-03-04 and 0.1.3 dated 2016-09-13

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Package Morpho updated to version 2.4.1.1 with previous version 2.4 dated 2016-08-01

Title: Calculations and Visualisations Related to Geometric Morphometrics
Description: A toolset for Geometric Morphometrics and mesh processing. This includes (among other stuff) mesh deformations based on reference points, permutation tests, detection of outliers, processing of sliding semi-landmarks and semi-automated surface landmark placement.
Author: Stefan Schlager [aut, cre, cph], Gregory Jefferis [ctb]
Maintainer: Stefan Schlager <stefan.schlager@uniklinik-freiburg.de>

Diff between Morpho versions 2.4 dated 2016-08-01 and 2.4.1.1 dated 2016-09-13

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New package rpsftm with initial version 1.0.0
Package: rpsftm
Type: Package
Title: Rank Preserving Structural Failure Time Models
Version: 1.0.0
Date: 2016-09-10
Author: Simon Bond
Maintainer: Simon Bond <simon.bond@addenbrookes.nhs.uk>
Description: Implements methods described by the paper Robins and Tsiatis (1991) <DOI:10.1080/03610929108830654>. These use g-estimation to estimate the causal effect of a treatment in a two-armed randomised control trial where non-compliance exists and is measured, under an assumption of an accelerated failure time model and no unmeasured confounders.
Depends: R (>= 2.10)
License: GPL-2
Imports: survival, ggplot2, stats
LazyData: true
RoxygenNote: 5.0.1
Suggests: testthat, knitr, rmarkdown, tableone
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-09-13 08:20:18 UTC; sjb277
Repository: CRAN
Date/Publication: 2016-09-13 11:45:12

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Package lubridate updated to version 1.6.0 with previous version 1.5.6 dated 2016-04-05

Title: Make Dealing with Dates a Little Easier
Description: Functions to work with date-times and time-spans: fast and user friendly parsing of date-time data, extraction and updating of components of a date-time (years, months, days, hours, minutes, and seconds), algebraic manipulation on date-time and time-span objects. The 'lubridate' package has a consistent and memorable syntax that makes working with dates easy and fun.
Author: Garrett Grolemund [aut], Vitalie Spinu [aut, cre], Hadley Wickham [aut], Ian Lyttle [ctb], Imanuel Constigan [ctb], Jason Law [ctb], Doug Mitarotonda [ctb], Joseph Larmarange [ctb], Jonathan Boiser [ctb], Chel Hee Lee [ctb]
Maintainer: Vitalie Spinu <spinuvit@gmail.com>

Diff between lubridate versions 1.5.6 dated 2016-04-05 and 1.6.0 dated 2016-09-13

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 lubridate-1.6.0/lubridate/tests/testthat/test-instants.R     |   13 
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Package hopbyhop updated to version 2.1 with previous version 1.0 dated 2016-01-21

Title: Transmissions and Receptions in a Hop by Hop Network
Description: Computes the expectation of the number of transmissions and receptions considering a Hop-by-Hop transport model with limited number of retransmissions per packet. It provides the theoretical results shown in Palma et. al.(2016) <DOI:10.1109/TLA.2016.7555237> and also estimated values based on Monte Carlo simulations.
Author: Christian E. Galarza, Jonathan M. Olate
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>

Diff between hopbyhop versions 1.0 dated 2016-01-21 and 2.1 dated 2016-09-13

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Package GUIDE updated to version 1.2.3.1 with previous version 1.2.3 dated 2016-09-11

Title: GUI for DErivatives in R
Description: A nice GUI for financial DErivatives in R.
Author: S Subramanian <ssubramanian@sssihl.edu.in>
Maintainer: S Subramanian <ssubramanian@sssihl.edu.in>

Diff between GUIDE versions 1.2.3 dated 2016-09-11 and 1.2.3.1 dated 2016-09-13

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Package foreign updated to version 0.8-67 with previous version 0.8-66 dated 2015-08-19

Title: Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, ...
Description: Functions for reading and writing data stored by some versions of Epi Info, Minitab, S, SAS, SPSS, Stata, Systat and Weka and for reading and writing some dBase files.
Author: R Core Team [aut, cph, cre], Roger Bivand [ctb, cph], Vincent J. Carey [ctb, cph], Saikat DebRoy [ctb, cph], Stephen Eglen [ctb, cph], Rajarshi Guha [ctb, cph], Nicholas Lewin-Koh [ctb, cph], Mark Myatt [ctb, cph], Ben Pfaff [ctb], Brian Quistorff [ctb], Frank Warmerdam [ctb, cph], Stephen Weigand [ctb, cph], Free Software Foundation, Inc. [cph]
Maintainer: R Core Team <R-core@R-project.org>

Diff between foreign versions 0.8-66 dated 2015-08-19 and 0.8-67 dated 2016-09-13

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Package CopulaREMADA updated to version 1.0 with previous version 0.9 dated 2015-06-12

Title: Copula Mixed Effect Models for Bivariate and Trivariate Meta-Analysis of Diagnostic Test Accuracy Studies
Description: It has functions to implement the copula mixed models for bivariate and trivariate meta-analysis of diagnostic test accuracy studies.
Author: Aristidis K. Nikoloulopoulos <A.Nikoloulopoulos@uea.ac.uk>
Maintainer: Aristidis K. Nikoloulopoulos <A.Nikoloulopoulos@uea.ac.uk>

Diff between CopulaREMADA versions 0.9 dated 2015-06-12 and 1.0 dated 2016-09-13

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New package bayesAB with initial version 0.6.0
Package: bayesAB
Type: Package
Title: Fast Bayesian Methods for AB Testing
Version: 0.6.0
Date: 2016-09-11
Authors@R: person("Frank", "Portman", email = "frank1214@gmail.com", role = c("aut", "cre"))
Description: A suite of functions that allow the user to analyze A/B test data in a Bayesian framework. Intended to be a drop-in replacement for common frequentist hypothesis test such as the t-test and chi-sq test.
License: MIT + file LICENSE
Imports: Rcpp (>= 0.12.4), ggplot2, reshape2, methods
LinkingTo: Rcpp
RoxygenNote: 5.0.1
Encoding: UTF-8
URL: https://github.com/FrankPortman/bayesAB
BugReports: https://github.com/FrankPortman/bayesAB/issues
Suggests: testthat, knitr, rmarkdown, magrittr
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-09-12 18:57:13 UTC; fportman
Author: Frank Portman [aut, cre]
Maintainer: Frank Portman <frank1214@gmail.com>
Repository: CRAN
Date/Publication: 2016-09-13 11:45:09

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New package anytime with initial version 0.0.1
Package: anytime
Type: Package
Title: Anything to 'POSIXct' Converter
Version: 0.0.1
Date: 2016-09-12
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Description: Convert input in character, integer, or numeric form into 'POSIXct' objects, using one of a number of predefined formats, and relying on Boost facilities for date and time parsing.
URL: http://dirk.eddelbuettel.com/code/anytime.html
BugReports: https://github.com/eddelbuettel/anytime/issues
License: GPL (>= 2)
Encoding: UTF-8
Imports: Rcpp (>= 0.12.6)
LinkingTo: Rcpp, BH
Suggests: gettz
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-09-12 18:46:00.176921 UTC; deddelbuettel
Repository: CRAN
Date/Publication: 2016-09-13 11:45:08

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Package mhurdle updated to version 1.1-7 with previous version 1.1-6 dated 2016-08-04

Title: Multiple Hurdle Tobit Models
Description: Estimation of models with zero left-censored variables. Null values may be caused by a selection process, insufficient resources or infrequency of purchase.
Author: Yves Croissant [aut, cre], Fabrizio Carlevaro [aut], Stephane Hoareau [aut]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>

Diff between mhurdle versions 1.1-6 dated 2016-08-04 and 1.1-7 dated 2016-09-13

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Package altmeta updated to version 2.2 with previous version 2.1 dated 2016-04-14

Title: Alternative Meta-Analysis Methods
Description: Provides alternative statistical methods for meta-analysis, including new heterogeneity tests and measures that are robust to outliers.
Author: Lifeng Lin and Haitao Chu
Maintainer: Lifeng Lin <linl@umn.edu>

Diff between altmeta versions 2.1 dated 2016-04-14 and 2.2 dated 2016-09-13

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Package AlignStat updated to version 1.3.0 with previous version 1.2.2 dated 2016-07-11

Title: Comparison of Alternative Multiple Sequence Alignments
Description: Methods for comparing two alternative multiple sequence alignments (MSAs) to determine whether they align homologous residues in the same columns as one another. It then classifies similarities and differences into conserved gaps, conserved sequence, merges, splits or shifts of one MSA relative to the other. Summarising these categories for each MSA column yields information on which sequence regions are agreed upon my both MSAs, and which differ. Several plotting functions enable easily visualisation of the comparison data for analysis.
Author: Thomas Shafee, Ira Cooke
Maintainer: Thomas Shafee <thomas.shafee@gmail.com>

Diff between AlignStat versions 1.2.2 dated 2016-07-11 and 1.3.0 dated 2016-09-13

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 man/compare_alignments.Rd |    5 ++++-
 5 files changed, 34 insertions(+), 19 deletions(-)

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