Title: Tools for Reading, Tokenizing and Parsing R Code
Description: Tools for the reading and tokenization of R code. The
'sourcetools' package provides both an R and C++ interface for the tokenization
of R code, and helpers for interacting with the tokenized representation of R
code.
Author: Kevin Ushey
Maintainer: Kevin Ushey <kevinushey@gmail.com>
Diff between sourcetools versions 0.1.4 dated 2016-09-14 and 0.1.5 dated 2016-09-14
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 17 +++++++++++++++++ inst/include/sourcetools/core/macros.h | 7 ++++--- inst/include/sourcetools/cursor/TokenCursor.h | 5 +++-- inst/include/sourcetools/tokenization/Token.h | 19 ++++++++++--------- src/Reader.cpp | 6 ++++-- tests/testthat/test-tokenize.R | 3 +-- 8 files changed, 49 insertions(+), 28 deletions(-)
More information about radiant.basics at CRAN
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Title: Bayesian Regression Models using Stan
Description: Fit Bayesian generalized (non-)linear mixed models using Stan for full
Bayesian inference.
Author: Paul-Christian Buerkner [aut, cre]
Maintainer: Paul-Christian Buerkner <paul.buerkner@gmail.com>
Diff between brms versions 0.10.0 dated 2016-06-29 and 1.0.0 dated 2016-09-14
brms-0.10.0/brms/inst/chunks/data_categorical.stan |only brms-0.10.0/brms/inst/chunks/data_multi.stan |only brms-0.10.0/brms/inst/chunks/fun_inv_gaussian_ccdf.stan |only brms-0.10.0/brms/inst/chunks/fun_inv_gaussian_cdf.stan |only brms-0.10.0/brms/inst/chunks/fun_inv_gaussian_pw.stan |only brms-0.10.0/brms/inst/chunks/fun_inv_gaussian_vector.stan |only brms-0.10.0/brms/man/cor_fixed.Rd |only brms-0.10.0/brms/tests/testthat/tests.nonlinear_predictor.R |only brms-1.0.0/brms/DESCRIPTION | 22 brms-1.0.0/brms/MD5 | 174 - brms-1.0.0/brms/NAMESPACE | 11 brms-1.0.0/brms/R/brm.R | 414 ---- brms-1.0.0/brms/R/brmsfit-helpers.R | 329 ++- brms-1.0.0/brms/R/brmsfit-methods.R | 927 +++++---- brms-1.0.0/brms/R/brmsformula.R |only brms-1.0.0/brms/R/correlations.R | 28 brms-1.0.0/brms/R/data-helpers.R | 701 +++---- brms-1.0.0/brms/R/distributions.R | 53 brms-1.0.0/brms/R/extract_draws.R | 206 +- brms-1.0.0/brms/R/families.R | 727 +++---- brms-1.0.0/brms/R/fitted.R | 146 - brms-1.0.0/brms/R/generics.R | 65 brms-1.0.0/brms/R/linear_predictor.R | 90 brms-1.0.0/brms/R/loglik.R | 278 +- brms-1.0.0/brms/R/make_stancode.R | 183 - brms-1.0.0/brms/R/make_standata.R | 193 + brms-1.0.0/brms/R/misc-methods.R | 8 brms-1.0.0/brms/R/misc.R | 112 - brms-1.0.0/brms/R/plots.R | 53 brms-1.0.0/brms/R/predict.R | 300 +-- brms-1.0.0/brms/R/priors.R | 331 +-- brms-1.0.0/brms/R/rename.R | 520 +++-- brms-1.0.0/brms/R/stan-helpers.R | 556 ++--- brms-1.0.0/brms/R/stan-predictor.R | 529 ++--- brms-1.0.0/brms/R/sysdata.rda |only brms-1.0.0/brms/R/validate.R | 978 +++++----- brms-1.0.0/brms/R/zzz.R | 17 brms-1.0.0/brms/README.md | 32 brms-1.0.0/brms/build/vignette.rds |binary brms-1.0.0/brms/inst/CITATION |only brms-1.0.0/brms/inst/NEWS.Rd | 78 brms-1.0.0/brms/inst/chunks/data_mv.stan |only brms-1.0.0/brms/inst/chunks/fun_hurdle_gamma.stan | 21 brms-1.0.0/brms/inst/chunks/fun_hurdle_negbinomial.stan | 26 brms-1.0.0/brms/inst/chunks/fun_hurdle_poisson.stan | 20 brms-1.0.0/brms/inst/chunks/fun_inv_gaussian.stan |only brms-1.0.0/brms/inst/chunks/fun_tan_half.stan |only brms-1.0.0/brms/inst/chunks/fun_von_mises.stan |only brms-1.0.0/brms/inst/chunks/fun_zero_inflated_beta.stan | 27 brms-1.0.0/brms/inst/chunks/fun_zero_inflated_binomial.stan | 24 brms-1.0.0/brms/inst/chunks/fun_zero_inflated_negbinomial.stan | 27 brms-1.0.0/brms/inst/chunks/fun_zero_inflated_poisson.stan | 21 brms-1.0.0/brms/inst/doc/brms.ltx | 203 +- brms-1.0.0/brms/inst/doc/brms.pdf |binary brms-1.0.0/brms/inst/doc/brms_families.Rmd | 22 brms-1.0.0/brms/inst/doc/brms_families.html | 16 brms-1.0.0/brms/man/as.mcmc.brmsfit.Rd | 2 brms-1.0.0/brms/man/brm.Rd | 366 --- brms-1.0.0/brms/man/brms-package.Rd | 19 brms-1.0.0/brms/man/brmsfamily.Rd | 131 - brms-1.0.0/brms/man/brmsfit-class.Rd | 37 brms-1.0.0/brms/man/brmsformula.Rd |only brms-1.0.0/brms/man/coef.brmsfit.Rd | 12 brms-1.0.0/brms/man/cov_fixed.Rd |only brms-1.0.0/brms/man/get_prior.Rd | 26 brms-1.0.0/brms/man/hypothesis.Rd | 16 brms-1.0.0/brms/man/make_stancode.Rd | 26 brms-1.0.0/brms/man/make_standata.Rd | 28 brms-1.0.0/brms/man/marginal_effects.Rd | 13 brms-1.0.0/brms/man/plot.brmsfit.Rd | 8 brms-1.0.0/brms/man/posterior_samples.Rd | 7 brms-1.0.0/brms/man/pp_check.Rd |only brms-1.0.0/brms/man/pp_check.brmsfit.Rd |only brms-1.0.0/brms/man/ranef.brmsfit.Rd | 3 brms-1.0.0/brms/man/set_prior.Rd | 17 brms-1.0.0/brms/tests/testthat/tests.brmsfit-helpers.R | 24 brms-1.0.0/brms/tests/testthat/tests.brmsfit-methods.R | 314 +-- brms-1.0.0/brms/tests/testthat/tests.brmsformula.R |only brms-1.0.0/brms/tests/testthat/tests.data-helpers.R | 34 brms-1.0.0/brms/tests/testthat/tests.families.R | 21 brms-1.0.0/brms/tests/testthat/tests.fitted.R | 18 brms-1.0.0/brms/tests/testthat/tests.loglik.R | 73 brms-1.0.0/brms/tests/testthat/tests.make_stancode.R | 80 brms-1.0.0/brms/tests/testthat/tests.make_standata.R | 112 - brms-1.0.0/brms/tests/testthat/tests.misc.R | 31 brms-1.0.0/brms/tests/testthat/tests.plots.R | 50 brms-1.0.0/brms/tests/testthat/tests.predict.R | 27 brms-1.0.0/brms/tests/testthat/tests.priors.R | 110 - brms-1.0.0/brms/tests/testthat/tests.rename.R | 68 brms-1.0.0/brms/tests/testthat/tests.stan-helpers.R | 149 - brms-1.0.0/brms/tests/testthat/tests.stan_functions.R | 63 brms-1.0.0/brms/tests/testthat/tests.validate.R | 258 +- brms-1.0.0/brms/vignettes/brms.ltx | 203 +- brms-1.0.0/brms/vignettes/brms_families.Rmd | 22 brms-1.0.0/brms/vignettes/citations.bib | 60 brms-1.0.0/brms/vignettes/inhaler_plot.pdf |binary brms-1.0.0/brms/vignettes/kidney_marginal_effects.pdf |binary brms-1.0.0/brms/vignettes/kidney_plot.pdf |binary 98 files changed, 5674 insertions(+), 5222 deletions(-)
Title: Synthetic Microdata and Spatial MicroSimulation Modeling for ACS
Data
Description: Firstly provides a wrapper to library(acs) to access curated set
of American Community Survey (ACS) base tables which may be of interest
to many researchers. Secondly, it builds synthetic micro-datasets of ACS data
at any specified geographic level with 10 default individual attributes. Thirdly,
provides functionality for data-extensibility of micro-datasets; allowing users
to both add data attributes and marginalize undesired attributes. And
finally, the package also conducts spatial microsimulation modeling (SMSM)
via simulated annealing. SMSM is conducted in parallel by default.
Author: Alex Whitworth [aut, cre]
Maintainer: Alex Whitworth <whitworth.alex@gmail.com>
Diff between synthACS versions 0.5.4 dated 2016-06-28 and 1.0.0 dated 2016-09-14
DESCRIPTION | 13 MD5 | 91 ++- NAMESPACE | 14 R/RcppExports.R | 2 R/a_class-methods_helpers.R | 287 ++++++++++- R/a_data-documentation.R | 74 ++ R/pull_population.R | 8 R/sim_anneal_wrappers.R | 80 ++- R/sim_annealing.R | 49 + R/synth_age_gender_marital.R | 15 R/synth_edu.R | 7 R/synth_emp.R | 8 R/synth_geomob.R | 8 R/synth_inc.R | 8 R/synth_nativity.R | 15 R/synth_new_attr.R | 248 +++++---- R/synth_pov.R | 21 R/synth_race.R | 8 data/AgeRaceDR.rda |only data/LifeExp.rda |only data/stateFR.rda |only man/AgeRaceDR.Rd |only man/LifeExp.Rd |only man/add_constraint.Rd | 11 man/adjDR.Rd | 2 man/all_geog_constraint_age.Rd | 7 man/all_geog_constraint_edu.Rd | 7 man/all_geog_constraint_employment.Rd | 7 man/all_geog_constraint_gender.Rd | 7 man/all_geog_constraint_geog_mob.Rd | 7 man/all_geog_constraint_income.Rd | 7 man/all_geog_constraint_marital_status.Rd | 7 man/all_geog_constraint_nativity.Rd | 7 man/all_geog_constraint_poverty.Rd | 7 man/all_geog_constraint_race.Rd | 7 man/all_geog_synthetic_new_attribute.Rd | 49 + man/calculate_TAE.Rd | 9 man/combine_smsm.Rd |only man/gen_attr_vectors.Rd |only man/get_best_fit.Rd |only man/get_final_tae.Rd |only man/marginalize_attr.Rd |only man/optimize_microdata.Rd | 13 man/plot_TAEpath.Rd |only man/stateFR.Rd |only man/synthetic_new_attribute.Rd | 62 +- src/RcppExports.cpp | 10 tests/testthat/build_test_dat1.R | 5 tests/testthat/test-class_synthACS_methods.R | 41 + tests/testthat/test-combine_smsm.R |only tests/testthat/test-sim_anneal.R | 40 - tests/testthat/test-sim_anneal_parallel.R | 17 tests/testthat/test-synth_new_attr.R | 687 +++++++++++++++++++++------ 53 files changed, 1515 insertions(+), 457 deletions(-)
More information about radiant.design at CRAN
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Title: Bindings for the 'HaveIBeenPwned.com' Data Breach API
Description: Utilising the 'Have I been pwned?' API (see <https://haveibeenpwned.com/API/v2>
for more information), check whether email addresses and/or user names have been present
in a publicly disclosed data breach.
Author: Steph Locke [aut, cre],
Troy Hunt [aut] (HaveIBeenPwned.com)
Maintainer: Steph Locke <stephanie.g.locke@gmail.com>
Diff between HIBPwned versions 0.1.0.0 dated 2016-06-01 and 0.1.3 dated 2016-09-14
DESCRIPTION | 12 +++---- MD5 | 12 +++---- NEWS.md | 3 + R/utils.R | 11 ++++--- README.md | 2 - build/vignette.rds |binary inst/doc/HIBP.html | 83 ++++++++++++++++++++++++++++------------------------- 7 files changed, 67 insertions(+), 56 deletions(-)
Title: Analyze Multivariate Phenotypes by Combining Univariate Results
Description: Combining Univariate Association Test Results of Multiple Phenotypes for Detecting Pleiotropy.
Author: Shuo Li <skyli@bu.edu>, Xuan Liu <liuxuan@bu.edu> and Qiong Yang <qyang@bu.edu>
Maintainer: Shuo Li <skyli@bu.edu>
Diff between CUMP versions 1.0 dated 2012-05-17 and 2.0 dated 2016-09-14
CUMP-1.0/CUMP/CUMP |only CUMP-2.0/CUMP/DESCRIPTION | 19 CUMP-2.0/CUMP/MD5 | 30 - CUMP-2.0/CUMP/NAMESPACE | 8 CUMP-2.0/CUMP/R/combGWAS.R | 796 ++++++++++++++++++++------------------ CUMP-2.0/CUMP/man/CUMP-package.Rd | 16 CUMP-2.0/CUMP/man/combGWAS.Rd | 122 +++-- 7 files changed, 525 insertions(+), 466 deletions(-)
Title: Turner Miscellaneous
Description: Miscellaneous data and utility functions
for manipulating data and your R environment.
Author: Stephen Turner <vustephen@gmail.com>
Maintainer: Stephen Turner <vustephen@gmail.com>
Diff between Tmisc versions 0.1.9 dated 2016-09-01 and 0.1.10 dated 2016-09-14
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++++++---- NAMESPACE | 19 +++++++++++++++++++ NEWS.md | 7 +++++++ R/Thist.R |only R/Tpairs.R |only R/beep.R |only R/corner.R |only README.md | 2 +- inst |only man/Thist.Rd |only man/Tpairs.Rd |only man/beep.Rd |only man/corner.Rd |only 14 files changed, 44 insertions(+), 9 deletions(-)
Title: (Robust) Mediation Analysis
Description: Perform mediation analysis via a bootstrap test.
Author: Andreas Alfons [aut, cre]
Maintainer: Andreas Alfons <alfons@ese.eur.nl>
Diff between robmed versions 0.1.0 dated 2016-09-12 and 0.1.1 dated 2016-09-14
DESCRIPTION | 8 ++-- MD5 | 9 ++--- NEWS |only R/fortify.R | 72 +++++++++++++++++++++---------------------- build/partial.rdb |binary man/fortify.testMediation.Rd | 32 +++++++++---------- 6 files changed, 61 insertions(+), 60 deletions(-)
Title: Bayesian Optimization of Hyperparameters
Description: A Pure R implementation of Bayesian Global Optimization with Gaussian Processes.
Author: Yachen Yan [aut, cre]
Maintainer: Yachen Yan <yanyachen21@gmail.com>
Diff between rBayesianOptimization versions 1.0.0 dated 2016-05-08 and 1.1.0 dated 2016-09-14
rBayesianOptimization-1.0.0/rBayesianOptimization/LICENSE |only rBayesianOptimization-1.1.0/rBayesianOptimization/DESCRIPTION | 12 - rBayesianOptimization-1.1.0/rBayesianOptimization/MD5 | 21 - rBayesianOptimization-1.1.0/rBayesianOptimization/NAMESPACE | 9 rBayesianOptimization-1.1.0/rBayesianOptimization/R/BayesianOptimization.R | 110 +++++++--- rBayesianOptimization-1.1.0/rBayesianOptimization/R/KFold.R | 1 rBayesianOptimization-1.1.0/rBayesianOptimization/R/Utility.R | 4 rBayesianOptimization-1.1.0/rBayesianOptimization/R/Utility_Max.R | 8 rBayesianOptimization-1.1.0/rBayesianOptimization/R/Utils.R | 6 rBayesianOptimization-1.1.0/rBayesianOptimization/R/rBayesianOptimization.R | 2 rBayesianOptimization-1.1.0/rBayesianOptimization/man/BayesianOptimization.Rd | 19 + rBayesianOptimization-1.1.0/rBayesianOptimization/man/rBayesianOptimization.Rd | 2 12 files changed, 129 insertions(+), 65 deletions(-)
More information about rBayesianOptimization at CRAN
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Title: Plot the Effects of Variables in Interaction Terms
Description: Plots the conditional coefficients ("marginal effects") of
variables included in multiplicative interaction terms.
Author: Frederick Solt [aut],
Yue Hu [aut, cre],
Brenton Kenkel [ctb]
Maintainer: Yue Hu <yue-hu-1@uiowa.edu>
Diff between interplot versions 0.1.3 dated 2016-08-21 and 0.1.4 dated 2016-09-14
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/Interplot_mlm.R | 4 ++-- R/Interplot_mlmmi.R | 4 ++-- inst/doc/interplot-vignette.html | 16 ++++++++-------- 6 files changed, 25 insertions(+), 20 deletions(-)
Title: Analysis of Diffusion Weighted Imaging (DWI) Data
Description: Diffusion Weighted Imaging (DWI) is a Magnetic Resonance Imaging
modality, that measures diffusion of water in tissues like the human
brain. The package contains R-functions to process diffusion-weighted
data. The functionality includes diffusion tensor imaging (DTI),
diffusion kurtosis imaging (DKI), modeling for high angular resolution
diffusion weighted imaging (HARDI) using Q-ball-reconstruction and
tensor mixture models, several methods for structural adaptive
smoothing including POAS and msPOAS, and a streamline fiber tracking
for tensor and tensor mixture models.
The package provides functionality to manipulate and visualize results
in 2D and 3D.
Author: Karsten Tabelow [aut, cre],
Joerg Polzehl [aut],
Felix Anker [ctb]
Maintainer: Karsten Tabelow <karsten.tabelow@wias-berlin.de>
Diff between dti versions 1.2-4.1 dated 2016-02-09 and 1.2-6 dated 2016-09-14
DESCRIPTION | 8 +- MD5 | 58 ++++++++++---------- R/awsse3.r | 4 - R/awsse3ms.r | 2 R/awsse3mstestprop.r | 2 R/awsse3mswghts.r | 2 R/varest.r | 9 +++ man/awssigmc.Rd | 7 ++ man/readDWIdata.Rd | 2 src/LawsonHansonnnls.f | 67 ++++++++++++++---------- src/aniso.f | 76 +++++++++++++-------------- src/awsvar.f | 10 +-- src/design.f | 16 ++--- src/dtifull.f | 16 ++--- src/dtinraw2.f | 49 +++++++++-------- src/esiglike.f | 24 ++++---- src/fibers.f | 18 +++--- src/misc.f | 49 +++++++++-------- src/miscmt.f | 80 ++++++++++++++-------------- src/mixtenbv.f | 66 +++++++++++++---------- src/mixtens.f | 100 ++++++++++++++++++------------------ src/mixtensl.f | 66 +++++++++++++---------- src/nlrdtirg.f | 32 ++++++----- src/rice.f | 22 +++---- src/show3d.f | 48 +++++++++-------- src/smse3.f | 136 ++++++++++++++++++++++++------------------------- src/smse3w.f | 18 +++--- src/sqrtODF.f | 35 ++++++------ src/tensor.f | 15 ++--- src/varest.f | 52 +++++++++--------- 30 files changed, 574 insertions(+), 515 deletions(-)
Title: Handling of Swedish Identity Numbers
Description: Structural handling of identity numbers used in the Swedish
administration such as personal identity numbers ('personnummer') and
organizational identity numbers ('organisationsnummer').
Author: Mans Magnusson and Erik Bulow
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>
Diff between sweidnumbr versions 1.2.0 dated 2016-04-15 and 1.4.1 dated 2016-09-14
sweidnumbr-1.2.0/sweidnumbr/vignettes/sweidnumbr.md |only sweidnumbr-1.4.1/sweidnumbr/DESCRIPTION | 8 sweidnumbr-1.4.1/sweidnumbr/MD5 | 41 - sweidnumbr-1.4.1/sweidnumbr/NAMESPACE | 5 sweidnumbr-1.4.1/sweidnumbr/R/oin.R | 44 - sweidnumbr-1.4.1/sweidnumbr/R/oin_methods.R | 15 sweidnumbr-1.4.1/sweidnumbr/R/pin.R | 16 sweidnumbr-1.4.1/sweidnumbr/R/pin_methods.R | 6 sweidnumbr-1.4.1/sweidnumbr/R/rin.R |only sweidnumbr-1.4.1/sweidnumbr/build/vignette.rds |binary sweidnumbr-1.4.1/sweidnumbr/inst/doc/sweidnumbr.R | 6 sweidnumbr-1.4.1/sweidnumbr/inst/doc/sweidnumbr.Rmd | 36 - sweidnumbr-1.4.1/sweidnumbr/inst/doc/sweidnumbr.html | 482 ++++---------- sweidnumbr-1.4.1/sweidnumbr/man/as.oin.Rd | 2 sweidnumbr-1.4.1/sweidnumbr/man/as.pin.Rd | 2 sweidnumbr-1.4.1/sweidnumbr/man/oin_ctrl.Rd | 2 sweidnumbr-1.4.1/sweidnumbr/man/oin_group.Rd | 2 sweidnumbr-1.4.1/sweidnumbr/man/roin.Rd |only sweidnumbr-1.4.1/sweidnumbr/man/rpin.Rd |only sweidnumbr-1.4.1/sweidnumbr/tests/testthat/test-as.oin.R | 10 sweidnumbr-1.4.1/sweidnumbr/tests/testthat/test-c.oin.R |only sweidnumbr-1.4.1/sweidnumbr/tests/testthat/test-c.pin.R |only sweidnumbr-1.4.1/sweidnumbr/tests/testthat/test-pin_age.R | 3 sweidnumbr-1.4.1/sweidnumbr/tests/testthat/test-rin.R |only sweidnumbr-1.4.1/sweidnumbr/vignettes/sweidnumbr.Rmd | 17 25 files changed, 293 insertions(+), 404 deletions(-)
Title: Accesses Air Quality Data from the Open Data Platform OpenAQ
Description: Allows access to air quality data from the API of the OpenAQ platform <https://docs.openaq.org/>, with the different services the API offers (getting measurements for a given query, getting latest measurements, getting lists of available countries/cities/locations).
Author: Maëlle Salmon [aut, cre],
Andrew MacDonald [ctb] (Andrew MacDonald reviewed the package for
rOpenSci, see https://github.com/ropensci/onboarding/issues/24),
Andy Teucher [ctb] (Andy Teucher reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/24)
Maintainer: Maëlle Salmon <maelle.salmon@yahoo.se>
Diff between ropenaq versions 0.1.1 dated 2016-07-07 and 0.1.3 dated 2016-09-14
ropenaq-0.1.1/ropenaq/tests/testthat/tests.R |only ropenaq-0.1.3/ropenaq/DESCRIPTION | 10 ropenaq-0.1.3/ropenaq/MD5 | 79 ropenaq-0.1.3/ropenaq/NEWS.md | 10 ropenaq-0.1.3/ropenaq/R/cities.R | 22 ropenaq-0.1.3/ropenaq/R/countries.R | 13 ropenaq-0.1.3/ropenaq/R/latest.R | 33 ropenaq-0.1.3/ropenaq/R/locations.R | 29 ropenaq-0.1.3/ropenaq/R/measurements.R | 54 ropenaq-0.1.3/ropenaq/R/utils.R | 97 ropenaq-0.1.3/ropenaq/inst/doc/Ropenaq-vignette.R | 36 ropenaq-0.1.3/ropenaq/inst/doc/Ropenaq-vignette.Rmd | 53 ropenaq-0.1.3/ropenaq/inst/doc/Ropenaq-vignette.html | 1355 +--------- ropenaq-0.1.3/ropenaq/inst/doc/animated-map.R | 2 ropenaq-0.1.3/ropenaq/inst/doc/animated-map.Rmd | 2 ropenaq-0.1.3/ropenaq/inst/doc/animated-map.html | 8 ropenaq-0.1.3/ropenaq/inst/doc/graphics_of_pm_25_concentrations_in_several_countries.R | 51 ropenaq-0.1.3/ropenaq/inst/doc/graphics_of_pm_25_concentrations_in_several_countries.Rmd | 53 ropenaq-0.1.3/ropenaq/inst/doc/graphics_of_pm_25_concentrations_in_several_countries.html | 47 ropenaq-0.1.3/ropenaq/inst/doc/mapping_openaq_monitors.R | 13 ropenaq-0.1.3/ropenaq/inst/doc/mapping_openaq_monitors.Rmd | 13 ropenaq-0.1.3/ropenaq/inst/doc/mapping_openaq_monitors.html | 23 ropenaq-0.1.3/ropenaq/inst/doc/using_openair_package_with_openaq_data.R | 4 ropenaq-0.1.3/ropenaq/inst/doc/using_openair_package_with_openaq_data.Rmd | 4 ropenaq-0.1.3/ropenaq/inst/doc/using_openair_package_with_openaq_data.html | 10 ropenaq-0.1.3/ropenaq/man/aq_cities.Rd | 15 ropenaq-0.1.3/ropenaq/man/aq_countries.Rd | 15 ropenaq-0.1.3/ropenaq/man/aq_latest.Rd | 20 ropenaq-0.1.3/ropenaq/man/aq_locations.Rd | 22 ropenaq-0.1.3/ropenaq/man/aq_measurements.Rd | 32 ropenaq-0.1.3/ropenaq/tests/testthat/test-buildQueries.R | 7 ropenaq-0.1.3/ropenaq/tests/testthat/test-cities.R | 22 ropenaq-0.1.3/ropenaq/tests/testthat/test-countries.R | 16 ropenaq-0.1.3/ropenaq/tests/testthat/test-latest.R | 20 ropenaq-0.1.3/ropenaq/tests/testthat/test-locations.R | 14 ropenaq-0.1.3/ropenaq/tests/testthat/test-measurements.R | 22 ropenaq-0.1.3/ropenaq/vignettes/Ropenaq-vignette.Rmd | 53 ropenaq-0.1.3/ropenaq/vignettes/animated-map.Rmd | 2 ropenaq-0.1.3/ropenaq/vignettes/graphics_of_pm_25_concentrations_in_several_countries.Rmd | 53 ropenaq-0.1.3/ropenaq/vignettes/mapping_openaq_monitors.Rmd | 13 ropenaq-0.1.3/ropenaq/vignettes/using_openair_package_with_openaq_data.Rmd | 4 41 files changed, 859 insertions(+), 1492 deletions(-)
Title: Nested Association Mapping
Description: Designed for association studies in nested association mapping (NAM) panels, also handling experimental and random panels. It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.
Author: Alencar Xavier, William Muir, Katy Rainey, Shizhong Xu.
Maintainer: Alencar Xavier <alenxav@gmail.com>
Diff between NAM versions 1.4.6 dated 2016-08-08 and 1.4.7 dated 2016-09-14
NAM-1.4.6/NAM/inst/comp |only NAM-1.4.7/NAM/DESCRIPTION | 18 NAM-1.4.7/NAM/MD5 | 72 NAM-1.4.7/NAM/NAMESPACE | 2 NAM-1.4.7/NAM/R/gibbs.R | 12 NAM-1.4.7/NAM/R/gmm.R |only NAM-1.4.7/NAM/R/gwas.R | 2789 +++++++++++++++---------- NAM-1.4.7/NAM/R/reml.R | 114 - NAM-1.4.7/NAM/R/snp.R | 125 - NAM-1.4.7/NAM/R/wgr.R | 72 NAM-1.4.7/NAM/build/vignette.rds |binary NAM-1.4.7/NAM/data/met.RData |only NAM-1.4.7/NAM/data/tpod.RData |binary NAM-1.4.7/NAM/demo |only NAM-1.4.7/NAM/inst/add |only NAM-1.4.7/NAM/inst/doc/background_stat_gen.pdf |binary NAM-1.4.7/NAM/inst/doc/gwa_description.pdf |binary NAM-1.4.7/NAM/inst/doc/vignette1.Rmd | 116 - NAM-1.4.7/NAM/inst/doc/vignette1.html | 1054 +++------ NAM-1.4.7/NAM/inst/doc/vignette2.R | 38 NAM-1.4.7/NAM/inst/doc/vignette2.Rmd | 6 NAM-1.4.7/NAM/inst/doc/vignette2.html | 463 +--- NAM-1.4.7/NAM/man/Internals.Rd | 6 NAM-1.4.7/NAM/man/Manhattan.Rd | 15 NAM-1.4.7/NAM/man/NAM-package.Rd | 10 NAM-1.4.7/NAM/man/gibbs.Rd | 37 NAM-1.4.7/NAM/man/gmm.Rd |only NAM-1.4.7/NAM/man/gwas.Rd | 47 NAM-1.4.7/NAM/man/met.Rd |only NAM-1.4.7/NAM/man/reml.Rd | 13 NAM-1.4.7/NAM/man/snpH2.Rd | 13 NAM-1.4.7/NAM/man/tpod.Rd | 4 NAM-1.4.7/NAM/man/wgr.Rd | 29 NAM-1.4.7/NAM/vignettes/vignette1.Rmd | 116 - NAM-1.4.7/NAM/vignettes/vignette2.Rmd | 6 35 files changed, 2950 insertions(+), 2227 deletions(-)
Title: Algebraic Tools for the Analysis of Multiple Social Networks
Description: Algebraic procedures for the analysis of multiple social networks are delivered with
this package. Among other things, it makes possible to create and manipulate multivariate
network data with different formats, and there are effective ways available to treat multiple
networks with routines that combine algebraic systems like the partially ordered semigroup or
the semiring structure together with the relational bundles occurring in different types of
multivariate network data sets. It also provides an algebraic approach for two-mode networks
through Galois derivations between families of the pairs of subsets in the two domains.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>
Diff between multiplex versions 2.0 dated 2016-08-16 and 2.1 dated 2016-09-14
DESCRIPTION | 22 ++-- MD5 | 46 ++++---- R/bnd.R |only R/bundle.census.R | 231 +++--------------------------------------- R/bundles.R | 258 +++++------------------------------------------ R/cph.R | 7 - R/fltr.R | 52 +++++---- R/is.mc.R | 4 R/partial.order.R | 1 R/pi.rels.R | 4 R/read.dl.R | 69 +++++++++--- R/read.gml.R | 8 - R/transf.R | 9 + inst/CHANGELOG | 36 +++++- man/bnd.Rd |only man/comps.Rd | 6 - man/cph.Rd | 4 man/expos.Rd | 2 man/fltr.Rd | 6 - man/galois.Rd | 14 +- man/multiplex-package.Rd | 24 +--- man/partial.order.Rd | 4 man/read.dl.Rd | 2 man/rel.sys.Rd | 6 - man/transf.Rd | 8 - 25 files changed, 246 insertions(+), 577 deletions(-)
Title: A Robust, High Performance JSON Parser and Generator for R
Description: A fast JSON parser and generator optimized for statistical data
and the web. Started out as a fork of 'RJSONIO', but has been completely
rewritten in recent versions. The package offers flexible, robust, high
performance tools for working with JSON in R and is particularly powerful
for building pipelines and interacting with a web API. The implementation is
based on the mapping described in the vignette (Ooms, 2014). In addition to
converting JSON data from/to R objects, 'jsonlite' contains functions to
stream, validate, and prettify JSON data. The unit tests included with the
package verify that all edge cases are encoded and decoded consistently for
use with dynamic data in systems and applications.
Author: Jeroen Ooms, Duncan Temple Lang, Lloyd Hilaiel
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between jsonlite versions 1.0 dated 2016-07-01 and 1.1 dated 2016-09-14
DESCRIPTION | 6 - MD5 | 38 +++++------ NEWS | 7 ++ R/push_parser.R | 2 R/stream.R | 19 ++++- inst/doc/json-aaquickstart.html | 38 +++++------ inst/doc/json-apis.Rmd | 129 +++++++++++++++++++------------------- inst/doc/json-apis.html | 135 ++++++++++++++++++++-------------------- inst/doc/json-mapping.pdf |binary inst/doc/json-opencpu.pdf |binary inst/doc/json-paging.Rmd | 2 inst/doc/json-paging.html | 8 +- src/Makevars | 3 src/integer64_to_na.c | 2 src/parse.c | 4 - src/validate.c | 1 src/yajl/yajl_gen.c | 4 - vignettes/json-apis.Rmd | 129 +++++++++++++++++++------------------- vignettes/json-apis.Rmd.orig | 17 ++--- vignettes/json-paging.Rmd | 2 20 files changed, 284 insertions(+), 262 deletions(-)
Title: Estimation of the Effective Dimension Reduction ('EDR') Space
Description: The library contains R-functions to estimate the effective
dimension reduction space in 'multi-index' regression models.
Author: Joerg Polzehl <joerg.polzehl@wias-berlin.de>
Maintainer: Joerg Polzehl <joerg.polzehl@wias-berlin.de>
Diff between EDR versions 0.6-5.1 dated 2013-07-05 and 0.6-6 dated 2016-09-14
EDR-0.6-5.1/EDR/COPYRIGHT |only EDR-0.6-6/EDR/DESCRIPTION | 17 +++++++++-------- EDR-0.6-6/EDR/MD5 | 13 ++++++------- EDR-0.6-6/EDR/NAMESPACE | 8 ++++++++ EDR-0.6-6/EDR/R/edr.r | 20 +++++++++++++------- EDR-0.6-6/EDR/R/edrcv.r | 2 -- EDR-0.6-6/EDR/man/plot.edr.Rd | 4 ++-- EDR-0.6-6/EDR/src/edr.f | 19 ++++++++++--------- 8 files changed, 48 insertions(+), 35 deletions(-)
Title: Interface to 'Dygraphs' Interactive Time Series Charting Library
Description: An R interface to the 'dygraphs' JavaScript charting library
(a copy of which is included in the package). Provides rich facilities
for charting time-series data in R, including highly configurable
series- and axis-display and interactive features like zoom/pan and
series/point highlighting.
Author: Dan Vanderkam [aut, cph] (dygraphs library in htmlwidgets/lib,
http://dygraphs.com/),
JJ Allaire [aut, cre] (R interface),
RStudio [cph],
Jonathan Owen [aut, cph],
Daniel Gromer [aut, cph],
Petr Shevtsov [aut, cph],
Benoit Thieurmel [aut, cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/htmlwidgets/lib/jquery/AUTHORS.txt)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between dygraphs versions 1.1.1-1 dated 2016-08-06 and 1.1.1.2 dated 2016-09-14
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/NEWS | 7 +++++++ inst/htmlwidgets/dygraphs.js | 28 ++++++++++++++-------------- 4 files changed, 28 insertions(+), 21 deletions(-)
Title: 'DBHYDRO' Hydrologic and Water Quality Data
Description: Client for programmatic access to the South Florida Water
Management District's 'DBHYDRO' database at
<http://sfwmd.gov/dbhydro>, with functions
for accessing hydrologic and water quality data.
Author: Joseph Stachelek [aut, cre]
Maintainer: Joseph Stachelek <stachel2@msu.edu>
Diff between dbhydroR versions 0.1-6 dated 2016-08-03 and 0.2-0 dated 2016-09-14
dbhydroR-0.1-6/dbhydroR/man/cleanhydro.Rd |only dbhydroR-0.1-6/dbhydroR/man/cleanwq.Rd |only dbhydroR-0.1-6/dbhydroR/man/getdbkey.Rd |only dbhydroR-0.1-6/dbhydroR/man/gethydro.Rd |only dbhydroR-0.1-6/dbhydroR/man/getwq.Rd |only dbhydroR-0.1-6/dbhydroR/vignettes/Thumbs.db |only dbhydroR-0.2-0/dbhydroR/DESCRIPTION | 17 - dbhydroR-0.2-0/dbhydroR/MD5 | 40 +- dbhydroR-0.2-0/dbhydroR/NAMESPACE | 14 - dbhydroR-0.2-0/dbhydroR/NEWS.md | 32 ++ dbhydroR-0.2-0/dbhydroR/R/dbhydro_clean.R | 124 +++----- dbhydroR-0.2-0/dbhydroR/R/dbhydro_get.R | 238 +++++++++++++---- dbhydroR-0.2-0/dbhydroR/README.md | 73 ++++- dbhydroR-0.2-0/dbhydroR/inst/CITATION | 2 dbhydroR-0.2-0/dbhydroR/inst/doc/dbhydroR.R | 64 ++-- dbhydroR-0.2-0/dbhydroR/inst/doc/dbhydroR.Rnw | 68 +++- dbhydroR-0.2-0/dbhydroR/inst/doc/dbhydroR.pdf |binary dbhydroR-0.2-0/dbhydroR/inst/doc/dbhydroR.synctex.gz |only dbhydroR-0.2-0/dbhydroR/man/clean_hydro.Rd |only dbhydroR-0.2-0/dbhydroR/man/clean_wq.Rd |only dbhydroR-0.2-0/dbhydroR/man/get_dbkey.Rd |only dbhydroR-0.2-0/dbhydroR/man/get_hydro.Rd |only dbhydroR-0.2-0/dbhydroR/man/get_wq.Rd |only dbhydroR-0.2-0/dbhydroR/tests/testthat/test-getdbkey.R | 12 dbhydroR-0.2-0/dbhydroR/tests/testthat/test-gethydro.R | 14 - dbhydroR-0.2-0/dbhydroR/tests/testthat/test-getwq.R | 31 +- dbhydroR-0.2-0/dbhydroR/vignettes/dbhydroR.Rnw | 68 +++- 27 files changed, 527 insertions(+), 270 deletions(-)
Title: Flexible Univariate Count Models Based on Renewal Processes
Description: Flexible univariate count models based on renewal
processes. The models may include covariates and can be specified
with familiar formula syntax as in glm().
Author: Tarak Kharrat, Georgi N. Boshnakov
Maintainer: Tarak Kharrat <tarak.kharrat@gmail.com>
Diff between Countr versions 3.2.0 dated 2016-03-23 and 3.2.6 dated 2016-09-14
Countr-3.2.0/Countr/R/dBivariateWeibull.R |only Countr-3.2.0/Countr/inst/include/BivWei_series.h |only Countr-3.2.0/Countr/inst/include/Biv_utils.h |only Countr-3.2.0/Countr/man/dBivariateWeibullCountFrankCopula.Rd |only Countr-3.2.0/Countr/man/dCount_conv_user.Rd |only Countr-3.2.0/Countr/man/dRenewalFrankCopula_user.Rd |only Countr-3.2.0/Countr/man/dWeibullCountgammaCount.Rd |only Countr-3.2.0/Countr/man/dmodifiedCount_user.Rd |only Countr-3.2.0/Countr/man/evCount_conv_user.Rd |only Countr-3.2.0/Countr/man/extractAIC.renewal.Rd |only Countr-3.2.0/Countr/man/se.coef.renewal.Rd |only Countr-3.2.0/Countr/src/Biv_utils.cpp |only Countr-3.2.0/Countr/tests/testthat/test-BivariateWeibull.R |only Countr-3.2.6/Countr/DESCRIPTION | 28 Countr-3.2.6/Countr/MD5 | 114 - Countr-3.2.6/Countr/NAMESPACE | 150 - Countr-3.2.6/Countr/NEWS | 21 Countr-3.2.6/Countr/R/Countr.R | 10 Countr-3.2.6/Countr/R/RcppExports.R | 930 +++++----- Countr-3.2.6/Countr/R/Renewal_cstr.R | 252 +- Countr-3.2.6/Countr/R/Renewal_methods.R | 99 - Countr-3.2.6/Countr/R/convCount_loglik.R | 109 - Countr-3.2.6/Countr/R/convCount_moments.R | 30 Countr-3.2.6/Countr/R/convCount_probs.R | 121 - Countr-3.2.6/Countr/R/dWeibull.R | 226 +- Countr-3.2.6/Countr/R/dWeibullgamma.R | 258 +- Countr-3.2.6/Countr/R/data.R |only Countr-3.2.6/Countr/R/renewalIV.R |only Countr-3.2.6/Countr/R/renewalTools.R | 434 +--- Countr-3.2.6/Countr/data |only Countr-3.2.6/Countr/inst/examples/example-RenewalRegression.R | 3 Countr-3.2.6/Countr/inst/examples/example-RenewalRegression_anc.R |only Countr-3.2.6/Countr/inst/examples/example-methods.R | 1 Countr-3.2.6/Countr/inst/extdata/start.RDS |only Countr-3.2.6/Countr/inst/include/Countr_RcppExports.h | 155 + Countr-3.2.6/Countr/inst/include/Countr_types.h | 1 Countr-3.2.6/Countr/inst/include/utils.h | 1 Countr-3.2.6/Countr/man/addBootSampleObject.renewal.Rd | 60 Countr-3.2.6/Countr/man/dCount_allProbs_bi.Rd | 9 Countr-3.2.6/Countr/man/dCount_conv_bi.Rd | 195 +- Countr-3.2.6/Countr/man/dCount_conv_loglik_bi.Rd | 194 +- Countr-3.2.6/Countr/man/dCount_dePril_bi.Rd | 2 Countr-3.2.6/Countr/man/dCount_naive_bi.Rd | 2 Countr-3.2.6/Countr/man/dWeibullCount.Rd | 60 Countr-3.2.6/Countr/man/dWeibullgammaCount.Rd | 58 Countr-3.2.6/Countr/man/dmodifiedCount_bi.Rd | 29 Countr-3.2.6/Countr/man/evCount_conv_bi.Rd | 168 + Countr-3.2.6/Countr/man/fertility.Rd |only Countr-3.2.6/Countr/man/getParNames.Rd |only Countr-3.2.6/Countr/man/predict.renewal.Rd | 130 - Countr-3.2.6/Countr/man/renewal.Rd | 232 +- Countr-3.2.6/Countr/man/renewal.control.Rd | 26 Countr-3.2.6/Countr/man/renewal.convPars.Rd | 7 Countr-3.2.6/Countr/man/renewal.seriesPars.Rd | 13 Countr-3.2.6/Countr/man/renewal.weiMethod.Rd | 5 Countr-3.2.6/Countr/man/renewal_methods.Rd | 189 +- Countr-3.2.6/Countr/man/se.coef.Rd | 34 Countr-3.2.6/Countr/man/surv.Rd | 124 - Countr-3.2.6/Countr/src/RcppExports.cpp | 465 +++-- Countr-3.2.6/Countr/src/built_in_distributions.cpp | 37 Countr-3.2.6/Countr/src/conv_all.cpp | 179 + Countr-3.2.6/Countr/src/conv_dePril.cpp | 273 +- Countr-3.2.6/Countr/src/conv_naive.cpp | 255 +- Countr-3.2.6/Countr/src/modifiedRenewal.cpp | 59 Countr-3.2.6/Countr/src/series_hetwei.cpp | 110 + Countr-3.2.6/Countr/src/series_weibull.cpp | 215 -- Countr-3.2.6/Countr/src/utils.cpp | 9 Countr-3.2.6/Countr/tests/testthat/test-built_in_distributions.R | 5 68 files changed, 3305 insertions(+), 2782 deletions(-)
Title: Class and Methods Definitions for Packages 'aws', 'adimpro',
'fmri', 'dwi'
Description: Defines the method extract and provides 'openMP' support as needed in several packages.
Author: Joerg Polzehl [aut, cre],
Felix Anker [ctb]
Maintainer: Joerg Polzehl <joerg.polzehl@wias-berlin.de>
Diff between awsMethods versions 1.0-3.1 dated 2016-01-08 and 1.0-4 dated 2016-09-14
DESCRIPTION | 18 +++++++++--------- MD5 | 4 ++-- src/Makevars.in | 6 +++--- 3 files changed, 14 insertions(+), 14 deletions(-)
Title: Tools for Reading, Tokenizing and Parsing R Code
Description: Tools for the reading and tokenization of R code. The
'sourcetools' package provides both an R and C++ interface for the tokenization
of R code, and helpers for interacting with the tokenized representation of R
code.
Author: Kevin Ushey
Maintainer: Kevin Ushey <kevinushey@gmail.com>
Diff between sourcetools versions 0.1.3 dated 2016-09-13 and 0.1.4 dated 2016-09-14
DESCRIPTION | 7 ++-- MD5 | 11 ++++--- inst/include/sourcetools.h | 1 inst/include/sourcetools/core/macros.h | 4 ++ inst/include/sourcetools/platform |only inst/include/sourcetools/read/posix/MemoryMappedConnection.h | 8 ++++- inst/include/sourcetools/tokenization/Token.h | 16 ++++++----- 7 files changed, 29 insertions(+), 18 deletions(-)
Title: Create Dashboards with 'Shiny'
Description: Create dashboards with 'Shiny'. This package provides
a theme on top of 'Shiny', making it easy to create attractive dashboards.
Author: Winston Chang [aut, cre],
RStudio [cph],
Almasaeed Studio [ctb, cph] (AdminLTE theme for Bootstrap),
Adobe Systems Incorporated [ctb, cph] (Source Sans Pro font)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between shinydashboard versions 0.5.1 dated 2015-09-09 and 0.5.2 dated 2016-09-14
shinydashboard-0.5.1/shinydashboard/NEWS |only shinydashboard-0.5.2/shinydashboard/DESCRIPTION | 12 shinydashboard-0.5.2/shinydashboard/MD5 | 90 shinydashboard-0.5.2/shinydashboard/NAMESPACE | 2 shinydashboard-0.5.2/shinydashboard/NEWS.md |only shinydashboard-0.5.2/shinydashboard/R/dashboardSidebar.R | 93 shinydashboard-0.5.2/shinydashboard/R/menuOutput.R | 3 shinydashboard-0.5.2/shinydashboard/R/utils.R | 59 shinydashboard-0.5.2/shinydashboard/README.md | 4 shinydashboard-0.5.2/shinydashboard/inst/AdminLTE/AdminLTE.css | 1258 ++++++++-- shinydashboard-0.5.2/shinydashboard/inst/AdminLTE/AdminLTE.min.css | 4 shinydashboard-0.5.2/shinydashboard/inst/AdminLTE/README-shiny-mods.md | 4 shinydashboard-0.5.2/shinydashboard/inst/AdminLTE/_all-skins.css | 260 +- shinydashboard-0.5.2/shinydashboard/inst/AdminLTE/_all-skins.min.css | 2 shinydashboard-0.5.2/shinydashboard/inst/AdminLTE/app.js | 129 - shinydashboard-0.5.2/shinydashboard/inst/AdminLTE/app.min.js | 2 shinydashboard-0.5.2/shinydashboard/inst/AdminLTE/app.min.js.map | 2 shinydashboard-0.5.2/shinydashboard/man/box.Rd | 4 shinydashboard-0.5.2/shinydashboard/man/dashboardBody.Rd | 2 shinydashboard-0.5.2/shinydashboard/man/dashboardHeader.Rd | 6 shinydashboard-0.5.2/shinydashboard/man/dashboardPage.Rd | 4 shinydashboard-0.5.2/shinydashboard/man/dashboardSidebar.Rd | 6 shinydashboard-0.5.2/shinydashboard/man/dropdownMenu.Rd | 6 shinydashboard-0.5.2/shinydashboard/man/dropdownMenuOutput.Rd | 6 shinydashboard-0.5.2/shinydashboard/man/infoBox.Rd | 4 shinydashboard-0.5.2/shinydashboard/man/menuItemOutput.Rd | 6 shinydashboard-0.5.2/shinydashboard/man/menuOutput.Rd | 6 shinydashboard-0.5.2/shinydashboard/man/messageItem.Rd | 4 shinydashboard-0.5.2/shinydashboard/man/notificationItem.Rd | 4 shinydashboard-0.5.2/shinydashboard/man/renderDropdownMenu.Rd | 2 shinydashboard-0.5.2/shinydashboard/man/renderMenu.Rd | 14 shinydashboard-0.5.2/shinydashboard/man/renderValueBox.Rd | 2 shinydashboard-0.5.2/shinydashboard/man/shinydashboard.Rd | 2 shinydashboard-0.5.2/shinydashboard/man/sidebarMenu.Rd | 8 shinydashboard-0.5.2/shinydashboard/man/sidebarMenuOutput.Rd | 6 shinydashboard-0.5.2/shinydashboard/man/sidebarSearchForm.Rd | 5 shinydashboard-0.5.2/shinydashboard/man/sidebarUserPanel.Rd | 9 shinydashboard-0.5.2/shinydashboard/man/tabBox.Rd | 8 shinydashboard-0.5.2/shinydashboard/man/tabItem.Rd | 2 shinydashboard-0.5.2/shinydashboard/man/tabItems.Rd | 4 shinydashboard-0.5.2/shinydashboard/man/tagAssert.Rd | 2 shinydashboard-0.5.2/shinydashboard/man/taskItem.Rd | 4 shinydashboard-0.5.2/shinydashboard/man/updateTabItems.Rd | 2 shinydashboard-0.5.2/shinydashboard/man/validColors.Rd | 2 shinydashboard-0.5.2/shinydashboard/man/validStatuses.Rd | 2 shinydashboard-0.5.2/shinydashboard/man/valueBox.Rd | 4 shinydashboard-0.5.2/shinydashboard/man/valueBoxOutput.Rd | 2 47 files changed, 1517 insertions(+), 545 deletions(-)
More information about shinydashboard at CRAN
Permanent link
Title: Tools for Analyzing Factorial Experiments
Description: Offers a helping hand to psychologists and other behavioral scientists who routinely deal with experimental data from factorial experiments. It includes several functions to format output from other R functions according to the style guidelines of the APA (American Psychological Association). This formatted output can be copied directly into manuscripts to facilitate data reporting. These features are backed up by a toolkit of several small helper functions, e.g., offering out-of-the-box outlier removal. The package lends its name to Georg "Schorsch" Schuessler, ingenious technician at the Department of Psychology III, University of Wuerzburg.
Author: Roland Pfister, Markus Janczyk
Maintainer: Roland Pfister <roland.pfister@psychologie.uni-wuerzburg.de>
Diff between schoRsch versions 1.2 dated 2015-07-05 and 1.3 dated 2016-09-14
DESCRIPTION | 10 ++++++---- MD5 | 16 ++++++++-------- R/anova_out.R | 4 +++- man/anova_out.Rd | 2 +- man/chi_out.Rd | 2 +- man/cor_out.Rd | 2 +- man/outlier.Rd | 6 +++--- man/schoRsch.Rd | 13 ++++++++----- man/t_out.Rd | 2 +- 9 files changed, 32 insertions(+), 25 deletions(-)
Title: Various Programming Utilities
Description: Utility functions useful when programming and developing R packages.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.utils versions 2.3.0 dated 2016-04-14 and 2.4.0 dated 2016-09-14
R.utils-2.3.0/R.utils/R/OperatorDelayedAssign.R |only R.utils-2.3.0/R.utils/tests/OperatorDelayedAssign.R |only R.utils-2.4.0/R.utils/DESCRIPTION | 14 R.utils-2.4.0/R.utils/MD5 | 71 ++-- R.utils-2.4.0/R.utils/NEWS | 16 R.utils-2.4.0/R.utils/R/Arguments.R | 15 R.utils-2.4.0/R.utils/R/DEPRECATED.OperatorDelayedAssign.R |only R.utils-2.4.0/R.utils/R/GString-class.R | 6 R.utils-2.4.0/R.utils/R/Verbose.R | 23 + R.utils-2.4.0/R.utils/R/arrayIndex.R | 7 R.utils-2.4.0/R.utils/R/beta/Options.ui.Rtodo | 2 R.utils-2.4.0/R.utils/R/copyDirectory.R | 2 R.utils-2.4.0/R.utils/R/createLink.R | 2 R.utils-2.4.0/R.utils/R/gcDLLs.R |only R.utils-2.4.0/R.utils/R/gstring.R | 2 R.utils-2.4.0/R.utils/R/hsize.R | 4 R.utils-2.4.0/R.utils/R/insert.R | 4 R.utils-2.4.0/R.utils/R/nullfile.R |only R.utils-2.4.0/R.utils/R/readTable.R | 2 R.utils-2.4.0/R.utils/R/readWindowsShortcut.R | 6 R.utils-2.4.0/R.utils/R/removeDirectory.R | 2 R.utils-2.4.0/R.utils/R/unwrap.array.R | 2 R.utils-2.4.0/R.utils/R/withLocale.R | 186 +++++------ R.utils-2.4.0/R.utils/man/PERCENTLT_-PERCENT.Rd | 15 R.utils-2.4.0/R.utils/man/TextStatusBar.Rd | 2 R.utils-2.4.0/R.utils/man/arrayIndex.Rd | 7 R.utils-2.4.0/R.utils/man/createWindowsShortcut.Rd | 2 R.utils-2.4.0/R.utils/man/gcDLLs.Rd |only R.utils-2.4.0/R.utils/man/getReadablePathname.Arguments.Rd | 8 R.utils-2.4.0/R.utils/man/hsize.Rd | 2 R.utils-2.4.0/R.utils/man/insert.Rd | 12 R.utils-2.4.0/R.utils/man/nullfile.Rd |only R.utils-2.4.0/R.utils/man/readWindowsShortcut.Rd | 6 R.utils-2.4.0/R.utils/tests/TextStatusBar.R | 2 R.utils-2.4.0/R.utils/tests/countLines.R | 212 ++++++------- R.utils-2.4.0/R.utils/tests/dimNA.R | 4 R.utils-2.4.0/R.utils/tests/gcDLLs.R |only R.utils-2.4.0/R.utils/tests/insert.R | 8 R.utils-2.4.0/R.utils/tests/nullfile.R |only R.utils-2.4.0/R.utils/tests/symlinks,files.R | 4 R.utils-2.4.0/R.utils/tests/tmpfile.R | 44 +- 41 files changed, 364 insertions(+), 330 deletions(-)
Title: Mixed GAM Computation Vehicle with GCV/AIC/REML Smoothness
Estimation
Description: GAMs, GAMMs and other generalized ridge regression with
multiple smoothing parameter estimation by GCV, REML or UBRE/AIC.
Includes a gam() function, a wide variety of smoothers, JAGS
support and distributions beyond the exponential family.
Author: Simon Wood <simon.wood@r-project.org>
Maintainer: Simon Wood <simon.wood@r-project.org>
Diff between mgcv versions 1.8-14 dated 2016-08-20 and 1.8-15 dated 2016-09-14
ChangeLog | 17 +++++++++++ DESCRIPTION | 6 ++-- MD5 | 47 ++++++++++++++++----------------- R/bam.r | 13 ++++----- R/coxph.r | 3 +- R/gam.fit4.r | 10 +++---- R/gamlss.r | 4 ++ R/mgcv.r | 14 +++++++-- R/plots.r | 24 ++++++++-------- R/smooth.r | 7 ++-- R/soap.r | 6 ++-- man/bam.Rd | 6 ++-- man/coxph.Rd | 11 +++++-- man/coxpht.Rd |only man/family.mgcv.Rd | 1 man/gamm.Rd | 2 - man/gevlss.Rd | 5 ++- man/predict.bam.Rd | 5 ++- man/predict.gam.Rd | 20 +++++++++++++- man/rTweedie.Rd | 2 - man/single.index.Rd | 2 - man/smooth.construct.gp.smooth.spec.Rd | 2 - man/smooth.construct.so.smooth.spec.Rd | 16 +++++------ src/coxph.c | 16 ++++++----- src/gdi.c | 7 ++-- 25 files changed, 155 insertions(+), 91 deletions(-)
Title: Joint Modeling of Longitudinal and Survival Data
Description: Shared parameter models for the joint modeling of longitudinal and time-to-event data.
Author: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Maintainer: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Diff between JM versions 1.4-4 dated 2016-03-25 and 1.4-5 dated 2016-09-14
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/fixef.jointModel.R | 2 +- R/jointModel.R | 2 +- inst/NEWS | 7 +++++++ man/JM.Rd | 4 ++-- man/dynCJM.Rd | 2 +- man/rocJM.Rd | 2 +- 8 files changed, 24 insertions(+), 17 deletions(-)
Title: Avoid the Typical Working Directory Pain When Using 'knitr'
Description: An extension of 'knitr' that adds flexibility in several
ways. One common source of frustration with 'knitr' is that it assumes
the directory where the source file lives should be the working directory,
which is often not true. 'ezknitr' addresses this problem by giving you
complete control over where all the inputs and outputs are, and adds several
other convenient features to make rendering markdown/HTML documents easier.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between ezknitr versions 0.4 dated 2016-06-13 and 0.5 dated 2016-09-14
ezknitr-0.4/ezknitr/inst/doc/overview.R |only ezknitr-0.4/ezknitr/inst/doc/overview.Rmd |only ezknitr-0.4/ezknitr/inst/doc/overview.html |only ezknitr-0.4/ezknitr/vignettes/overview.Rmd |only ezknitr-0.5/ezknitr/DESCRIPTION | 6 +- ezknitr-0.5/ezknitr/MD5 | 22 +++++---- ezknitr-0.5/ezknitr/NEWS.md | 5 ++ ezknitr-0.5/ezknitr/R/core.R | 60 +++++++++++++------------- ezknitr-0.5/ezknitr/R/setup_test.R | 12 ++--- ezknitr-0.5/ezknitr/README.md | 65 ++++++++++++++++------------- ezknitr-0.5/ezknitr/build/vignette.rds |binary ezknitr-0.5/ezknitr/inst/doc/ezknitr.R |only ezknitr-0.5/ezknitr/inst/doc/ezknitr.Rmd |only ezknitr-0.5/ezknitr/inst/doc/ezknitr.html |only ezknitr-0.5/ezknitr/inst/joss |only ezknitr-0.5/ezknitr/vignettes/ezknitr.Rmd |only 16 files changed, 94 insertions(+), 76 deletions(-)
Title: Tools for Eurostat Open Data
Description: Tools to download data from the Eurostat database
<http://ec.europa.eu/eurostat> together with search and manipulation
utilities.
Author: Lahti Leo [aut, cre],
Biecek Przemyslaw [aut],
Kainu Markus [aut],
Huovari Janne [aut]
Maintainer: Lahti Leo <louhos@googlegroups.com>
Diff between eurostat versions 1.2.24 dated 2016-08-17 and 2.2.1 dated 2016-09-14
eurostat-1.2.24/eurostat/data/candidate_countries.rda |only eurostat-2.2.1/eurostat/DESCRIPTION | 14 eurostat-2.2.1/eurostat/MD5 | 99 ++- eurostat-2.2.1/eurostat/NAMESPACE | 14 eurostat-2.2.1/eurostat/R/cut_to_classes.R |only eurostat-2.2.1/eurostat/R/data_countries.R | 6 eurostat-2.2.1/eurostat/R/dic_order.R | 4 eurostat-2.2.1/eurostat/R/firstlib.R | 11 eurostat-2.2.1/eurostat/R/get_eurostat.R | 4 eurostat-2.2.1/eurostat/R/get_eurostat_dic.R | 26 - eurostat-2.2.1/eurostat/R/get_eurostat_geospatial.R |only eurostat-2.2.1/eurostat/R/get_eurostat_json.R | 8 eurostat-2.2.1/eurostat/R/get_eurostat_raw.R | 12 eurostat-2.2.1/eurostat/R/get_eurostat_toc.R | 2 eurostat-2.2.1/eurostat/R/harmonize_country_code.R | 1 eurostat-2.2.1/eurostat/R/label_eurostat.R | 14 eurostat-2.2.1/eurostat/R/merge_eurostat_geodata.R |only eurostat-2.2.1/eurostat/R/search_eurostat.R | 6 eurostat-2.2.1/eurostat/R/set_eurostat_toc.R | 5 eurostat-2.2.1/eurostat/R/tidy_eurostat.R | 11 eurostat-2.2.1/eurostat/README.md | 53 +- eurostat-2.2.1/eurostat/data/eu_candidate_countries.rda |only eurostat-2.2.1/eurostat/inst/CITATION | 7 eurostat-2.2.1/eurostat/inst/doc/eurostat_tutorial.R | 72 ++ eurostat-2.2.1/eurostat/inst/doc/eurostat_tutorial.Rmd | 166 +++++- eurostat-2.2.1/eurostat/inst/doc/eurostat_tutorial.pdf |binary eurostat-2.2.1/eurostat/man/cut_to_classes.Rd |only eurostat-2.2.1/eurostat/man/dic_order.Rd | 2 eurostat-2.2.1/eurostat/man/eu_countries.Rd | 8 eurostat-2.2.1/eurostat/man/get_eurostat.Rd | 4 eurostat-2.2.1/eurostat/man/get_eurostat_dic.Rd | 4 eurostat-2.2.1/eurostat/man/get_eurostat_geospatial.Rd |only eurostat-2.2.1/eurostat/man/get_eurostat_json.Rd | 4 eurostat-2.2.1/eurostat/man/get_eurostat_raw.Rd | 2 eurostat-2.2.1/eurostat/man/get_eurostat_toc.Rd | 2 eurostat-2.2.1/eurostat/man/label_eurostat.Rd | 10 eurostat-2.2.1/eurostat/man/merge_eurostat_geodata.Rd |only eurostat-2.2.1/eurostat/man/search_eurostat.Rd | 2 eurostat-2.2.1/eurostat/man/tidy_eurostat.Rd | 4 eurostat-2.2.1/eurostat/tests/testthat/test-all.R | 6 eurostat-2.2.1/eurostat/vignettes/eurostat_tutorial.Rmd | 166 +++++- eurostat-2.2.1/eurostat/vignettes/eurostat_tutorial.html | 336 ++++++++++--- eurostat-2.2.1/eurostat/vignettes/eurostat_tutorial.md | 380 +++++++++++---- eurostat-2.2.1/eurostat/vignettes/fig/maps1-1.pdf |only eurostat-2.2.1/eurostat/vignettes/fig/maps1-1.png |only eurostat-2.2.1/eurostat/vignettes/fig/maps2-1.pdf |only eurostat-2.2.1/eurostat/vignettes/fig/maps2-1.png |only eurostat-2.2.1/eurostat/vignettes/fig/maps3-1.jpeg |only eurostat-2.2.1/eurostat/vignettes/fig/maps3-1.pdf |only eurostat-2.2.1/eurostat/vignettes/fig/maps3-1.png |only eurostat-2.2.1/eurostat/vignettes/fig/maps3-2.pdf |only eurostat-2.2.1/eurostat/vignettes/fig/maps3-2.png |only eurostat-2.2.1/eurostat/vignettes/fig/maps4-1.pdf |only eurostat-2.2.1/eurostat/vignettes/fig/maps4-1.png |only eurostat-2.2.1/eurostat/vignettes/fig/maps6-1.pdf |only eurostat-2.2.1/eurostat/vignettes/fig/maps6-1.png |only eurostat-2.2.1/eurostat/vignettes/fig/maps7-1.pdf |only eurostat-2.2.1/eurostat/vignettes/fig/maps7-1.png |only eurostat-2.2.1/eurostat/vignettes/fig/maps8-1.pdf |only eurostat-2.2.1/eurostat/vignettes/fig/maps8-1.png |only eurostat-2.2.1/eurostat/vignettes/fig/mapsfi-1.pdf |only eurostat-2.2.1/eurostat/vignettes/fig/mapsfi-1.png |only eurostat-2.2.1/eurostat/vignettes/fig/plotGallery-1.pdf |binary eurostat-2.2.1/eurostat/vignettes/fig/trains_plot-1.pdf |binary 64 files changed, 1121 insertions(+), 344 deletions(-)
Title: Extensible Classes and Methods for Penalized-Regression-Based
Integration of Base Learners
Description: Extending the base classes and methods of EnsembleBase package for Penalized-Regression-based (Ridge and Lasso) integration of base learners. Default implementation uses cross-validation error to choose the optimal lambda (shrinkage parameter) for the final predictor. The package takes advantage of the file method provided in EnsembleBase package for writing estimation objects to disk in order to circumvent RAM bottleneck. Special save and load methods are provided to allow estimation objects to be saved to permanent files on disk, and to be loaded again into temporary files in a later R session. Users and developers can extend the package by extending the generic methods and classes provided in EnsembleBase package as well as this package.
Author: Mansour T.A. Sharabiani, Alireza S. Mahani
Maintainer: Alireza S. Mahani <alireza.s.mahani@gmail.com>
Diff between EnsemblePenReg versions 0.6 dated 2014-11-28 and 0.7 dated 2016-09-14
ChangeLog |only DESCRIPTION | 12 +-- MD5 | 15 ++-- NAMESPACE | 5 + R/aaa.R | 2 R/epenreg.R | 120 +++++++++++++++++++++---------------- man/epenreg.Rd | 6 + man/epenreg.baselearner.control.Rd | 2 man/epenreg.save.Rd | 15 ++++ 9 files changed, 109 insertions(+), 68 deletions(-)
More information about EnsemblePenReg at CRAN
Permanent link
Title: Extensible Package for Principal-Component-Regression-Based
Heterogeneous Ensemble Meta-Learning
Description: Extends the base classes and methods of 'EnsembleBase' package for Principal-Components-Regression-based (PCR) integration of base learners. Default implementation uses cross-validation error to choose the optimal number of PC components for the final predictor. The package takes advantage of the file method provided in 'EnsembleBase' package for writing estimation objects to disk in order to circumvent RAM bottleneck. Special save and load methods are provided to allow estimation objects to be saved to permanent files on disk, and to be loaded again into temporary files in a later R session. Users and developers can extend the package by extending the generic methods and classes provided in 'EnsembleBase' package as well as this package.
Author: Mansour T.A. Sharabiani, Alireza S. Mahani
Maintainer: Alireza S. Mahani <alireza.s.mahani@gmail.com>
Diff between EnsemblePCReg versions 1.1 dated 2016-06-28 and 1.1.1 dated 2016-09-14
ChangeLog | 4 ++++ DESCRIPTION | 10 +++++----- MD5 | 6 +++--- man/epcreg.save.Rd | 4 ++-- 4 files changed, 14 insertions(+), 10 deletions(-)
Title: Customized Training for Lasso and Elastic-Net Regularized
Generalized Linear Models
Description: Customized training is a simple technique for transductive
learning, when the test covariates are known at the time of training. The
method identifies a subset of the training set to serve as the training set
for each of a few identified subsets in the training set. This package
implements customized training for the glmnet() and cv.glmnet() functions.
Author: Scott Powers, Trevor Hastie, Robert Tibshirani
Maintainer: Scott Powers <sspowers@stanford.edu>
Diff between customizedTraining versions 1.0 dated 2016-02-11 and 1.1 dated 2016-09-14
DESCRIPTION | 8 - MD5 | 32 +++--- R/customizedGlmnet.R | 148 ++++++++++++++++-------------- R/cv.customizedGlmnet.R | 177 +++++++++++++++++++++---------------- R/predict.customizedGlmnet.R | 23 +++- R/predict.cv.customizedGlmnet.R | 2 R/predict.singleton.R | 8 - man/customizedGlmnet.Rd | 61 +++++------- man/cv.customizedGlmnet.Rd | 116 ++++++++++++++++++------ man/nonzero.customizedGlmnet.Rd | 30 +++--- man/plot.customizedGlmnet.Rd | 30 +++--- man/plot.cv.customizedGlmnet.Rd | 70 ++++++++++++-- man/predict.customizedGlmnet.Rd | 40 +++++--- man/predict.cv.customizedGlmnet.Rd | 74 ++++++++++++--- man/predict.singleton.Rd | 6 + man/print.customizedGlmnet.Rd | 30 +++--- man/print.cv.customizedGlmnet.Rd | 68 +++++++++++--- 17 files changed, 604 insertions(+), 319 deletions(-)
More information about customizedTraining at CRAN
Permanent link
Title: Maxent Distribution Model Selection
Description: Tools for training, selecting, and evaluating maximum entropy
(Maxent) distribution models. This package provides tools for user-
controlled transformation of explanatory variables, selection of variables
by nested model comparison, and flexible model evaluation and projection.
It is based on the strict maximum likelihood interpretation of maximum
entropy modelling.
Author: Julien Vollering [aut, cre],
Sabrina Mazzoni [aut],
Rune Halvorsen [aut]
Maintainer: Julien Vollering <julien.vollering@hisf.no>
Diff between MIAmaxent versions 0.3.6 dated 2016-09-12 and 0.3.7 dated 2016-09-14
MIAmaxent-0.3.6/MIAmaxent/data/DVs.rda |only MIAmaxent-0.3.6/MIAmaxent/data/seldvs.rda |only MIAmaxent-0.3.6/MIAmaxent/data/selevs.rda |only MIAmaxent-0.3.6/MIAmaxent/data/sp1po.rda |only MIAmaxent-0.3.6/MIAmaxent/man/DVs.Rd |only MIAmaxent-0.3.6/MIAmaxent/man/seldvs.Rd |only MIAmaxent-0.3.6/MIAmaxent/man/selevs.Rd |only MIAmaxent-0.3.6/MIAmaxent/man/sp1po.Rd |only MIAmaxent-0.3.7/MIAmaxent/DESCRIPTION | 11 +-- MIAmaxent-0.3.7/MIAmaxent/MD5 | 54 +++++++------- MIAmaxent-0.3.7/MIAmaxent/NEWS.md | 7 + MIAmaxent-0.3.7/MIAmaxent/R/MIAmaxent.R | 2 MIAmaxent-0.3.7/MIAmaxent/R/data.R | 55 +++++++++------ MIAmaxent-0.3.7/MIAmaxent/R/deriveVars.R | 11 +-- MIAmaxent-0.3.7/MIAmaxent/R/plotFOP.R | 6 - MIAmaxent-0.3.7/MIAmaxent/R/plotResp2.R | 4 - MIAmaxent-0.3.7/MIAmaxent/R/projectModel.R | 2 MIAmaxent-0.3.7/MIAmaxent/R/readData.R | 4 - MIAmaxent-0.3.7/MIAmaxent/R/testAUC.R | 4 - MIAmaxent-0.3.7/MIAmaxent/README.md | 20 ++++- MIAmaxent-0.3.7/MIAmaxent/data/toydata_dvs.rda |only MIAmaxent-0.3.7/MIAmaxent/data/toydata_seldvs.rda |only MIAmaxent-0.3.7/MIAmaxent/data/toydata_selevs.rda |only MIAmaxent-0.3.7/MIAmaxent/data/toydata_sp1po.rda |only MIAmaxent-0.3.7/MIAmaxent/man/MIAmaxent.Rd | 2 MIAmaxent-0.3.7/MIAmaxent/man/deriveVars.Rd | 11 +-- MIAmaxent-0.3.7/MIAmaxent/man/plotFOP.Rd | 6 - MIAmaxent-0.3.7/MIAmaxent/man/plotResp2.Rd | 4 - MIAmaxent-0.3.7/MIAmaxent/man/projectModel.Rd | 2 MIAmaxent-0.3.7/MIAmaxent/man/readData.Rd | 4 - MIAmaxent-0.3.7/MIAmaxent/man/testAUC.Rd | 4 - MIAmaxent-0.3.7/MIAmaxent/man/toydata_dvs.Rd |only MIAmaxent-0.3.7/MIAmaxent/man/toydata_seldvs.Rd |only MIAmaxent-0.3.7/MIAmaxent/man/toydata_selevs.Rd |only MIAmaxent-0.3.7/MIAmaxent/man/toydata_sp1po.Rd |only MIAmaxent-0.3.7/MIAmaxent/vignettes/modeling-example.Rmd | 2 36 files changed, 123 insertions(+), 92 deletions(-)