More information about Counterfactual at CRAN
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Title: Forecasting Using Smoothing Functions
Description: The set of smoothing functions used for time series analysis and in forecasting.
Currently the package includes exponential smoothing models and SARIMA in state-space
form + several simulation functions.
Author: Ivan Svetunkov [aut, cre] (Research Associate at Lancaster Centre for
Forecasting, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between smooth versions 1.4.3 dated 2016-09-16 and 1.4.4 dated 2016-09-20
DESCRIPTION | 10 - MD5 | 35 ++-- NAMESPACE | 1 NEWS | 14 + R/autossarima.R | 321 ++++++++++++++++++++------------------ R/zzz.R |only README.md | 29 ++- inst/doc/ces.html | 57 +++--- inst/doc/es.html | 52 +++--- inst/doc/ges.html | 12 - inst/doc/simulate.html | 14 - inst/doc/sma.html | 8 inst/doc/smooth-Documentation.pdf |binary inst/doc/smooth.Rmd | 2 inst/doc/smooth.html | 6 inst/doc/ssarima.html | 26 +-- src/ssgeneralfun.cpp | 2 tests/testthat/test_ssarima.R | 2 vignettes/smooth.Rmd | 2 19 files changed, 323 insertions(+), 270 deletions(-)
Title: Fast R and C++ Access to NIfTI Images
Description: Provides very fast access to images stored in the NIfTI-1 file
format <http://nifti.nimh.nih.gov/nifti-1>, with seamless synchronisation
between compiled C and interpreted R code. Not to be confused with
'RNiftyReg', which provides tools for image registration.
Author: Jon Clayden
Maintainer: Jon Clayden <code@clayden.org>
Diff between RNifti versions 0.2.0 dated 2016-09-19 and 0.2.1 dated 2016-09-20
DESCRIPTION | 12 +++++----- MD5 | 30 +++++++++++++------------- NEWS | 8 ++++++ R/image.R | 8 ++++++ R/nifti.R | 14 ++++++++++++ R/xform.R | 16 +++++++++++++ README.md | 6 +++-- inst/doxygen/html/_nifti_image_8h_source.html | 12 +++++----- inst/include/lib/NiftiImage.h | 11 +++++++-- man/dumpNifti.Rd | 7 ++++++ man/ndim.Rd | 4 +++ man/pixdim.Rd | 6 +++++ man/readNifti.Rd | 6 +++++ man/voxelToWorld.Rd | 7 ++++++ man/writeNifti.Rd | 4 +++ man/xform.Rd | 11 +++++++++ 16 files changed, 131 insertions(+), 31 deletions(-)
Title: UCA Rcmdr Plug-in
Description: Some extension to Rcmdr (R Commander), randomness test and predictions using active model, made by R-UCA project and used in teaching statistics at University of Cadiz (UCA).
Author: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between RcmdrPlugin.UCA versions 3.0-1 dated 2016-09-09 and 3.1-2 dated 2016-09-20
ChangeLog | 3 DESCRIPTION | 16 ++--- MD5 | 27 +++++--- NAMESPACE | 4 - R/RcmdrPlugin.UCA.R | 4 - demo |only inst/etc/menus.txt | 2 inst/po/es/LC_MESSAGES/R-RcmdrPlugin.UCA.mo |binary man/RcmdrPlugin.UCA-package.Rd | 87 ++++++++++++++++++++++------ man/RcmdrPlugin.UCA.es-package.Rd | 79 +++++++++++++++++++++---- po/R-RcmdrPlugin.UCA-es.po | 4 - 11 files changed, 174 insertions(+), 52 deletions(-)
More information about RcmdrPlugin.UCA at CRAN
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Title: R Interface to Google Fit API
Description: Provides interface to Google Fit REST API v1 (see <https://developers.google.com/fit/rest/v1/reference/>).
Author: Marcin Szymanski
Maintainer: Marcin Szymanski <ms32035@gmail.com>
Diff between RGoogleFit versions 0.1.0 dated 2016-04-25 and 0.2.0 dated 2016-09-20
DESCRIPTION | 8 ++++---- MD5 | 11 +++++++---- NAMESPACE | 2 ++ NEWS |only R/GetFitOAuth2Token.R |only R/RGoogleFit-package.R | 2 +- R/Utils.R | 5 ++++- man/GetFitOauth2Token.Rd |only 8 files changed, 18 insertions(+), 10 deletions(-)
Title: Inferring Shared Modules from Multiple Gene Expression Datasets
with Partially Overlapping Gene Sets
Description: A method to infer modules of co-expressed genes and the
dependencies among the modules from multiple expression datasets that may
contain different sets of genes. Please refer to: Extracting a low-dimensional
description of multiple gene expression datasets reveals a potential driver for
tumor-associated stroma in ovarian cancer, Safiye Celik, Benjamin A. Logsdon,
Stephanie Battle, Charles W. Drescher, Mara Rendi, R. David Hawkins and Su-In
Lee (2016) <DOI:10.1186/s13073-016-0319-7>.
Author: Safiye Celik
Maintainer: Safiye Celik <safiye@cs.washington.edu>
Diff between INSPIRE versions 1.1 dated 2016-09-17 and 1.3 dated 2016-09-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/INSPIRE.R | 4 ++-- man/INSPIRE.Rd | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Bayesian Latent Variable Analysis
Description: Fit a variety of Bayesian latent variable models, including confirmatory
factor analysis, structural equation models, and latent growth curve models.
Author: Edgar Merkle [aut, cre],
Yves Rosseel [aut]
Maintainer: Edgar Merkle <merklee@missouri.edu>
Diff between blavaan versions 0.1-4 dated 2016-06-17 and 0.2-1 dated 2016-09-20
DESCRIPTION | 13 MD5 | 35 +- NAMESPACE | 9 NEWS | 15 R/blav_fit_measures.R | 2 R/blav_object_inspect.R |only R/blav_object_methods.R | 52 +-- R/blav_utils.R | 127 ++------ R/blavaan.R | 153 ++++++--- R/lav_export_jags.R | 592 +++++++++++++++++--------------------- R/margloglik.R | 128 ++++---- R/postpred.R | 227 +++++++------- R/set_inits.R | 125 ++------ R/set_partable.R | 232 ++++++++++++--- R/set_priors.R | 740 +++++++++++------------------------------------- man/bcfa.Rd | 11 man/bgrowth.Rd | 11 man/blavaan.Rd | 11 man/bsem.Rd | 11 19 files changed, 1094 insertions(+), 1400 deletions(-)
Title: Create Dashboards with 'Shiny'
Description: Create dashboards with 'Shiny'. This package provides
a theme on top of 'Shiny', making it easy to create attractive dashboards.
Author: Winston Chang [aut, cre],
RStudio [cph],
Almasaeed Studio [ctb, cph] (AdminLTE theme for Bootstrap),
Adobe Systems Incorporated [ctb, cph] (Source Sans Pro font)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between shinydashboard versions 0.5.2 dated 2016-09-14 and 0.5.3 dated 2016-09-20
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/dashboardSidebar.R | 5 +++-- man/sidebarMenu.Rd | 3 ++- 5 files changed, 17 insertions(+), 10 deletions(-)
More information about shinydashboard at CRAN
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Title: Solver for Delay Differential Equations
Description: Routines for solving systems of delay differential equations by
interfacing numerical routines written by Simon N. Wood , with contributions
by Benjamin J. Cairns. These numerical routines first appeared in Simon
Wood's 'solv95' program. This package includes a vignette and a complete
user's guide. 'PBSddesolve' originally appeared on CRAN under the name
'ddesolve'. That version is no longer supported. The current name emphasizes
a close association with other PBS packages, particularly 'PBSmodelling'.
Author: Alex Couture-Beil [aut], Jon T. Schnute [aut], Rowan Haigh [aut, cre],
Simon N. Wood [aut], Benjamin J. Cairns [aut], Nicholas Boers [ctb]
Maintainer: Rowan Haigh <rowan.haigh@dfo-mpo.gc.ca>
Diff between PBSddesolve versions 1.11.29 dated 2014-05-16 and 1.12.2 dated 2016-09-20
PBSddesolve-1.11.29/PBSddesolve/inst/tests |only PBSddesolve-1.12.2/PBSddesolve/DESCRIPTION | 41 +- PBSddesolve-1.12.2/PBSddesolve/MD5 | 22 - PBSddesolve-1.12.2/PBSddesolve/R/zzz.r | 2 PBSddesolve-1.12.2/PBSddesolve/inst/doc/ChangeLog.txt | 138 +++++----- PBSddesolve-1.12.2/PBSddesolve/inst/doc/PBSddesolve-UG.pdf |binary PBSddesolve-1.12.2/PBSddesolve/inst/doc/PBSddesolveIntro.pdf |binary PBSddesolve-1.12.2/PBSddesolve/inst/unitTests |only PBSddesolve-1.12.2/PBSddesolve/man/PBSddesolve.Rd | 31 +- PBSddesolve-1.12.2/PBSddesolve/man/dde.Rd | 132 ++++----- PBSddesolve-1.12.2/PBSddesolve/man/pastvalue.Rd | 31 +- PBSddesolve-1.12.2/PBSddesolve/vignettes/PBSddesolveIntro.Rnw | 52 ++- 12 files changed, 253 insertions(+), 196 deletions(-)
More information about samplesizelogisticcasecontrol at CRAN
Permanent link
Title: Extreme Value Analysis with Goodness-of-Fit Testing
Description: Goodness-of-fit tests for selection of r in the r-largest order
statistics (GEVr) model. Goodness-of-fit tests for threshold selection in the
Generalized Pareto distribution (GPD). Random number generation and density functions
for the GEVr distribution. Profile likelihood for return level estimation
using the GEVr and Generalized Pareto distributions. P-value adjustments for
sequential, multiple testing error control. Non-stationary fitting of GEVr and
GPD.
Author: Brian Bader [aut, cre],
Jun Yan [ctb]
Maintainer: Brian Bader <brianbader@mail.com>
Diff between eva versions 0.2.3 dated 2016-05-30 and 0.2.4 dated 2016-09-20
eva-0.2.3/eva/R/gevCIboot.R |only eva-0.2.3/eva/man/gevCIboot.Rd |only eva-0.2.4/eva/DESCRIPTION | 11 ++--- eva-0.2.4/eva/MD5 | 34 ++++++++--------- eva-0.2.4/eva/NAMESPACE | 2 - eva-0.2.4/eva/R/eva.R | 3 - eva-0.2.4/eva/R/gevrProfShape.R | 10 ++++- eva-0.2.4/eva/R/gevrRl.R | 10 ++++- eva-0.2.4/eva/R/gpdProfShape.R | 14 ++++--- eva-0.2.4/eva/R/gpdRl.R | 10 ++++- eva-0.2.4/eva/inst/doc/introduction.R | 33 +++++------------ eva-0.2.4/eva/inst/doc/introduction.Rmd | 39 +++++--------------- eva-0.2.4/eva/inst/doc/introduction.html | 59 +++++++++++++++---------------- eva-0.2.4/eva/man/eva.Rd | 3 - eva-0.2.4/eva/man/gevrProfShape.Rd | 6 ++- eva-0.2.4/eva/man/gevrRl.Rd | 6 ++- eva-0.2.4/eva/man/gpdProfShape.Rd | 6 +-- eva-0.2.4/eva/man/gpdRl.Rd | 6 ++- eva-0.2.4/eva/vignettes/introduction.Rmd | 39 +++++--------------- 19 files changed, 130 insertions(+), 161 deletions(-)
Title: Functions for Creating Summary Tables for Statistical Reports
Description: Contains functions for generating tables for statistical reports written in Microsoft Word or LaTeX. There are functions for I-by-J frequency tables, comparison of means or medians across levels of a categorical variable, and summarizing fitted generalized linear models, generalized estimating equations, and Cox proportional hazards regression. Functions are available to handle data simple random samples or survey data. The package is intended to make it easier for researchers to translate results from statistical analyses in R to their reports or manuscripts.
Author: Dane R. Van Domelen
Maintainer: Dane R. Van Domelen <vandomed@gmail.com>
Diff between tab versions 3.1.1 dated 2015-03-15 and 3.1.2 dated 2016-09-20
DESCRIPTION | 14 - MD5 | 46 +-- NAMESPACE | 10 R/tabcox.R | 11 R/tabfreq.R | 608 ++++++++++++++++++++++++++++++-------------------- R/tabgee.R | 12 R/tabglm.R | 12 R/tabmeans.R | 26 +- R/tabmedians.R | 120 +++++++++ R/tabmulti.R | 12 data/d.rda |binary man/tab-package.Rd | 17 - man/tabcox.Rd | 14 - man/tabfreq.Rd | 13 - man/tabfreq_svy.Rd | 4 man/tabgee.Rd | 15 - man/tabglm.Rd | 13 - man/tabglm_svy.Rd | 4 man/tabmeans.Rd | 16 + man/tabmeans_svy.Rd | 4 man/tabmedians.Rd | 15 - man/tabmedians_svy.Rd | 4 man/tabmulti.Rd | 13 - man/tabmulti_svy.Rd | 4 24 files changed, 697 insertions(+), 310 deletions(-)
Title: Robust Data-Driven Statistical Inference in
Regression-Discontinuity Designs
Description: Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust() to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect() to perform bandwidth selection for the different procedures implemented, and rdplot() to conduct exploratory data analysis (RD plots).
Author: Sebastian Calonico <scalonico@bus.miami.edu>, Matias D. Cattaneo <cattaneo@umich.edu>, Max H. Farrell, <max.farrell@chicagobooth.edu>, Rocio Titiunik <titiunik@umich.edu>
Maintainer: Sebastian Calonico <scalonico@bus.miami.edu>
Diff between rdrobust versions 0.93 dated 2016-08-15 and 0.94 dated 2016-09-20
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/functions.R | 7 ++++--- R/rdbwselect.R | 10 +++++----- R/rdplot.R | 8 ++++---- R/rdrobust.R | 44 +++++++++++++++++++++++++------------------- man/rdrobust-package.Rd | 4 ++-- 7 files changed, 50 insertions(+), 43 deletions(-)
Title: Optimal Partitioning of Similarity Relations
Description: Contains a set of algorithms for creating
partitions and coverings of objects largely based on operations
on (dis)similarity relations (or matrices). There are several
iterative re-assignment algorithms optimizing different
goodness-of-clustering criteria. In addition, there are
covering algorithms 'clique' which derives maximal cliques, and
'maxpact' which creates a covering of maximally compact sets.
Graphical analyses and conversion routines are also included.
Author: David W. Roberts <droberts@montana.edu>
Maintainer: David W. Roberts <droberts@montana.edu>
Diff between optpart versions 2.2-0 dated 2016-01-23 and 2.3-0 dated 2016-09-20
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- inst/ChangeLog | 6 ++++++ src/clcdul.f | 6 +++--- src/maxpact.f | 2 ++ src/optindval.f | 6 ++++++ src/optpart.f | 16 ++++++++++++++-- src/optsil.f | 1 + src/opttdev.f | 2 ++ src/permute.f | 9 ++++----- 10 files changed, 51 insertions(+), 23 deletions(-)
Title: Conditional Random Fields
Description: Implements modeling and computational tools for conditional
random fields (CRF) model as well as other probabilistic undirected
graphical models of discrete data with pairwise and unary potentials.
Author: Ling-Yun Wu [aut, cre]
Maintainer: Ling-Yun Wu <wulingyun@gmail.com>
Diff between CRF versions 0.3-11 dated 2016-08-28 and 0.3-12 dated 2016-09-20
DESCRIPTION | 12 ++++++------ MD5 | 28 ++++++++++++++-------------- README.md | 4 ++-- data/Chain.RData |binary data/Clique.RData |binary data/Loop.RData |binary data/Small.RData |binary data/Tree.RData |binary inst/doc/Tutorial.Rmd | 20 ++++++++++---------- inst/doc/Tutorial.pdf |binary src/CRF.h | 1 + src/LoopyBP.cpp | 2 +- src/TRBP.cpp | 6 +++--- src/misc.h | 2 +- vignettes/Tutorial.Rmd | 20 ++++++++++---------- 15 files changed, 48 insertions(+), 47 deletions(-)
Title: Collection of Rudimentary Bioinformatics Tools
Description: Provides a bundle of basic and fundamental bioinformatics tools,
such as network querying and alignment, subnetwork extraction and search,
network biomarker identification.
Author: Ling-Yun Wu [aut, cre],
Qiang Huang [aut],
Duanchen Sun [aut]
Maintainer: Ling-Yun Wu <wulingyun@gmail.com>
Diff between Corbi versions 0.4-0 dated 2016-07-22 and 0.4-1 dated 2016-09-20
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- src/Corbi.h | 1 + 3 files changed, 9 insertions(+), 8 deletions(-)
Title: Gradient-Based Coenospace Vegetation Simulator
Description: Simulates the composition of samples of vegetation
according to gradient-based vegetation theory. Features a
flexible algorithm incorporating competition and complex
multi-gradient interaction.
Author: David W. Roberts <droberts@montana.edu>
Maintainer: David W. Roberts <droberts@montana.edu>
Diff between coenoflex versions 2.1-0 dated 2016-01-25 and 2.2-0 dated 2016-09-20
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/ChangeLog | 5 +++++ src/coenoflex.f | 33 ++++++++++++++++++++++++++++++--- 4 files changed, 42 insertions(+), 10 deletions(-)
Title: R Markdown Templates to Preregister Scientific Studies
Description: The R Markdown templates in this package are based on the Center
for Open Science Preregistration Challenge and the 'AsPredicted.org' questions.
They are, thus, particularly suited to draft preregistration documents for
these programs but can also be used for internally.
Author: Frederik Aust [aut, cre]
Maintainer: Frederik Aust <frederik.aust@uni-koeln.de>
Diff between prereg versions 0.1.0 dated 2016-02-16 and 0.2.0 dated 2016-09-20
prereg-0.1.0/prereg/tests/testthat/test_skeleton.R |only prereg-0.2.0/prereg/DESCRIPTION | 21 +-- prereg-0.2.0/prereg/MD5 | 28 ++-- prereg-0.2.0/prereg/NAMESPACE | 1 prereg-0.2.0/prereg/NEWS.md | 4 prereg-0.2.0/prereg/R/aspredicted_prereg.R |only prereg-0.2.0/prereg/R/cos_prereg.R | 11 - prereg-0.2.0/prereg/R/prereg.R | 9 - prereg-0.2.0/prereg/README.md | 70 +++++++--- prereg-0.2.0/prereg/inst/rmarkdown/templates/aspredicted_prereg |only prereg-0.2.0/prereg/inst/rmarkdown/templates/cos_prereg/skeleton/skeleton.Rmd | 20 ++ prereg-0.2.0/prereg/inst/rmarkdown/templates/cos_prereg/template.yaml | 2 prereg-0.2.0/prereg/man/aspredicted_prereg.Rd |only prereg-0.2.0/prereg/man/cos_prereg.Rd | 2 prereg-0.2.0/prereg/man/prereg.Rd | 8 - prereg-0.2.0/prereg/tests/testthat/test_skeletons.R |only 16 files changed, 114 insertions(+), 62 deletions(-)
Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources ('rpart', 'RWeka', 'PMML') yielding objects that share
functionality for print()/plot()/predict() methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree()) and model-based
recursive partitioning (mob()) from the 'party' package are provided based
on the new infrastructure.
Author: Torsten Hothorn [aut, cre],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.1-0 dated 2016-07-14 and 1.1-1 dated 2016-09-20
partykit-1.1-0/partykit/inst/tmp |only partykit-1.1-0/partykit/tests/Rplots.pdf |only partykit-1.1-1/partykit/DESCRIPTION | 12 ++--- partykit-1.1-1/partykit/MD5 | 28 ++++++------- partykit-1.1-1/partykit/R/cforest.R | 3 - partykit-1.1-1/partykit/R/ctree.R | 15 ++++--- partykit-1.1-1/partykit/R/glmtree.R | 6 +- partykit-1.1-1/partykit/R/node.R | 21 ++++++---- partykit-1.1-1/partykit/R/split.R | 49 +++++++++++++++++------- partykit-1.1-1/partykit/inst/NEWS.Rd | 12 +++++ partykit-1.1-1/partykit/inst/doc/constparty.pdf |binary partykit-1.1-1/partykit/inst/doc/ctree.pdf |binary partykit-1.1-1/partykit/inst/doc/mob.Rnw | 20 ++++----- partykit-1.1-1/partykit/inst/doc/mob.pdf |binary partykit-1.1-1/partykit/inst/doc/partykit.pdf |binary partykit-1.1-1/partykit/man/HuntingSpiders.Rd | 2 16 files changed, 106 insertions(+), 62 deletions(-)
Title: Short Term Forecasting via GMDH-Type Neural Network Algorithms
Description: Group method of data handling (GMDH) - type neural network algorithm is the heuristic self-organization method for modelling the complex systems. In this package, GMDH-type neural network algorithms are applied to make short term forecasting for a univariate time series.
Author: Osman Dag, Ceylan Yozgatligil
Maintainer: Osman Dag <osman.dag@hacettepe.edu.tr>
Diff between GMDH versions 1.5 dated 2016-05-04 and 1.6 dated 2016-09-20
DESCRIPTION | 10 +++++----- MD5 | 9 +++++---- NAMESPACE | 3 --- inst |only man/GMDH.Rd | 4 ++-- man/fcast.Rd | 5 +++-- 6 files changed, 15 insertions(+), 16 deletions(-)
Title: Modelling Spatial Variation in Disease Risk for Areal Data
Description: Formatting of population and case data, calculation of Standardized
Incidence Ratios, and fitting the BYM model using INLA.
Author: Patrick Brown <patrick.brown@utoronto.ca>, Lutong Zhou
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between diseasemapping versions 1.4.0 dated 2016-03-07 and 1.4.2 dated 2016-09-20
DESCRIPTION | 26 - MD5 | 60 ++- NAMESPACE | 41 -- R/bym.R | 105 +++--- R/cancer-rates.info.R | 6 R/cancerRates.R | 3 R/forInla.R | 1 R/formatCases.R | 3 R/formatPopulation.R | 230 +++++++-------- R/getBreaks.R | 1 R/getExpected.R |only R/getRates.R | 14 R/getSMR.R | 718 ++++++++++++++++------------------------------- R/getStdRate.R | 4 build/vignette.rds |binary data/casedata.RData |binary data/datalist |only data/kentucky.RData |binary data/kentuckyTract.RData |only data/popdata.RData |binary data/referencepop.RData |binary inst/CITATION | 63 ++-- inst/doc/bym.Rnw | 80 ++++- inst/doc/bym.pdf |binary man/bym.Rd | 129 +++++--- man/getRates.Rd | 2 man/getSMR.Rd | 49 +-- man/kentucky.Rd | 20 + man/nbInlaToGraph.Rd |only tests/bym.R | 3 tests/getSMR.R | 3 vignettes/Makefile | 4 vignettes/bym.Rnw | 80 ++++- 33 files changed, 801 insertions(+), 844 deletions(-)
More information about diseasemapping at CRAN
Permanent link
Title: Growth Charts via Regression Quantiles
Description: Fits non-crossing regression quantiles as a function of linear covariates and a smooth terms via B-splines with difference penalties.
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>
Diff between quantregGrowth versions 0.3-1 dated 2015-06-23 and 0.3-2 dated 2016-09-20
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 6 ++++++ NEWS | 7 +++++++ R/gcrq.R | 4 ++-- R/plot.gcrq.R | 2 ++ man/gcrq.Rd | 6 +++--- man/quantregGrowth-package.Rd | 4 ++-- 8 files changed, 33 insertions(+), 18 deletions(-)
More information about quantregGrowth at CRAN
Permanent link
Title: Bayesian Estimation of (Sparse) Latent Factor Stochastic
Volatility Models
Description: Markov chain Monte Carlo (MCMC) sampler for fully Bayesian
estimation of latent factor stochastic volatility models.
Sparsity can be achieved through the usage of Normal-Gamma priors
on the factor loading matrix.
Author: Gregor Kastner [aut, cre]
Maintainer: Gregor Kastner <gregor.kastner@wu.ac.at>
Diff between factorstochvol versions 0.8.1 dated 2016-08-31 and 0.8.2 dated 2016-09-20
factorstochvol-0.8.1/factorstochvol/man/predprecision.Rd |only factorstochvol-0.8.2/factorstochvol/DESCRIPTION | 6 - factorstochvol-0.8.2/factorstochvol/MD5 | 28 +++---- factorstochvol-0.8.2/factorstochvol/NAMESPACE | 2 factorstochvol-0.8.2/factorstochvol/NEWS | 9 ++ factorstochvol-0.8.2/factorstochvol/R/utilities_fsvdraws.R | 47 ++++++++----- factorstochvol-0.8.2/factorstochvol/R/wrappers.R | 12 +-- factorstochvol-0.8.2/factorstochvol/inst/CITATION | 2 factorstochvol-0.8.2/factorstochvol/man/predcond.Rd | 2 factorstochvol-0.8.2/factorstochvol/man/predcor.Rd | 2 factorstochvol-0.8.2/factorstochvol/man/predcov.Rd | 2 factorstochvol-0.8.2/factorstochvol/man/predh.Rd | 2 factorstochvol-0.8.2/factorstochvol/man/predloglik.Rd | 15 ++-- factorstochvol-0.8.2/factorstochvol/man/predloglikWB.Rd | 17 ++-- factorstochvol-0.8.2/factorstochvol/man/predprecWB.Rd |only factorstochvol-0.8.2/factorstochvol/src/sampler.cpp | 10 +- 16 files changed, 93 insertions(+), 63 deletions(-)
More information about factorstochvol at CRAN
Permanent link
Title: 'RStudio' Add-in to Insert Markdown Citations
Description: Functions and an 'RStudio' add-in that search a 'BibTeX'-file to create and
insert formatted Markdown citations into the current document.
Author: Frederik Aust [aut, cre],
Yihui Xie [ctb]
Maintainer: Frederik Aust <frederik.aust@uni-koeln.de>
Diff between citr versions 0.1.0 dated 2016-08-04 and 0.2.0 dated 2016-09-20
DESCRIPTION | 26 +-- MD5 | 28 +-- NEWS.md | 7 R/insert_citation.R | 260 +++++++++++++++++++++++------- R/md_cite.R | 44 +++-- R/md_cite_zotero.R |only R/onload.R | 2 R/query_bib.R | 70 ++++++-- README.md | 27 ++- man/insert_citation.Rd | 11 + man/md_cite.Rd | 18 +- man/md_cite_zotero.Rd |only man/query_bib.Rd | 15 + tests/testthat/test_paste_citation_keys.R | 2 tests/testthat/test_qurey_bib.R | 16 - tests/testthat/test_reference_list.R | 6 16 files changed, 395 insertions(+), 137 deletions(-)
Title: Dynamic Nomograms for Linear, Generalized Linear and
Proportional Hazard Models
Description: Demonstrate the results of a statistical model object as a dynamic nomogram in an 'RStudio' panel or web browser. DynNom supports a variety of model objects; 'lm', 'glm', 'coxph' and also 'Ols', 'Glm', 'lrm', 'cph' models.
Author: Amirhossein Jalali, Davood Roshan, Alberto Alvarez-Iglesias, John Newell
Maintainer: Amirhossein Jalali <a.jalali2@nuigalway.ie>
Diff between DynNom versions 2.0 dated 2015-10-30 and 3.0 dated 2016-09-20
DESCRIPTION | 14 +++++----- MD5 | 28 ++++++++++++++------- NAMESPACE | 11 +++++++- R/DynNom.R | 61 +++++++++++++++++++++++++++++++++++++++++------ R/DynNom_coxph.R | 23 ++++++++++------- R/DynNom_glm.R | 64 ++++++++++++++++++++++++++++++++------------------ R/DynNom_lm.R | 15 ++++++----- R/DynNom_rmsGlm.R |only R/DynNom_rmscph.R |only R/DynNom_rmslrm.R |only R/DynNom_rmsols.R |only man/DynNom.Rd | 63 +++++++++++++++++++++++++++++++++---------------- man/DynNom.coxph.Rd | 27 ++++++++++++--------- man/DynNom.glm.Rd | 15 +++++++---- man/DynNom.lm.Rd | 15 +++++++---- man/DynNom.rms.Glm.Rd |only man/DynNom.rms.cph.Rd |only man/DynNom.rms.lrm.Rd |only man/DynNom.rms.ols.Rd |only 19 files changed, 230 insertions(+), 106 deletions(-)
Title: PDQ Functions via Gram Charlier, Edgeworth, and Cornish Fisher
Approximations
Description: A collection of tools for approximating the 'PDQ' functions
(respectively, the cumulative distribution, density, and quantile) of
probability distributions via classical expansions involving moments and
cumulants.
Author: Steven E. Pav [aut, cre]
Maintainer: Steven E. Pav <shabbychef@gmail.com>
Diff between PDQutils versions 0.1.4 dated 2016-03-03 and 0.1.5 dated 2016-09-20
PDQutils-0.1.4/PDQutils/inst/tests |only PDQutils-0.1.4/PDQutils/tests/run-all.R |only PDQutils-0.1.5/PDQutils/DESCRIPTION | 16 +++++++------ PDQutils-0.1.5/PDQutils/MD5 | 30 ++++++++++++------------- PDQutils-0.1.5/PDQutils/R/PDQutils.r | 14 ++++++++++- PDQutils-0.1.5/PDQutils/README.md | 9 ++++--- PDQutils-0.1.5/PDQutils/build/vignette.rds |binary PDQutils-0.1.5/PDQutils/inst/doc/PDQutils.Rnw | 2 - PDQutils-0.1.5/PDQutils/inst/doc/PDQutils.pdf |binary PDQutils-0.1.5/PDQutils/man/AS269.Rd | 2 - PDQutils-0.1.5/PDQutils/man/NEWS.Rd | 18 ++++++++++++++- PDQutils-0.1.5/PDQutils/man/PDQutils.Rd | 2 - PDQutils-0.1.5/PDQutils/man/qapx_cf.Rd | 2 - PDQutils-0.1.5/PDQutils/tests/testthat |only PDQutils-0.1.5/PDQutils/tests/testthat.R |only PDQutils-0.1.5/PDQutils/vignettes/PDQutils.Rnw | 2 - 16 files changed, 64 insertions(+), 33 deletions(-)
Title: The Kernel Method of Test Equating
Description: Implements the kernel method of test equating using the CB, EG, SG, NEAT CE/PSE and NEC designs, supporting gaussian, logistic and uniform kernels and unsmoothed and pre-smoothed input data.
Author: Bjorn Andersson, Kenny Branberg and Marie Wiberg
Maintainer: Bjorn Andersson <bjoern.h.andersson@gmail.com>
Diff between kequate versions 1.5.0 dated 2015-12-22 and 1.6.0 dated 2016-09-20
DESCRIPTION | 8 MD5 | 18 NEWS | 9 R/kernel.R | 1341 ++++++++++++++++++++++++------------------------- build/vignette.rds |binary inst/doc/irtguide.pdf |binary inst/doc/kequate.pdf |binary man/irtose.Rd | 8 man/kequate-package.Rd | 4 man/kequate.Rd | 12 10 files changed, 722 insertions(+), 678 deletions(-)
Title: Download Stats of R Packages
Description: Monthly download stats of 'CRAN' and 'Bioconductor' packages.
Download stats of 'CRAN' packages is from the 'RStudio' 'CRAN mirror', see <http://cranlogs.r-pkg.org>.
'Bioconductor' package download stats is at <https://bioconductor.org/packages/stats/>.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between dlstats versions 0.0.8 dated 2016-08-11 and 0.0.9 dated 2016-09-20
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/cran_stats.R | 32 ++++++++++++++++---------------- R/utilities.R | 2 +- README.md | 6 +++--- inst/doc/dlstats.Rmd | 10 +++++----- inst/doc/dlstats.html | 20 ++++++++++---------- vignettes/dlstats.Rmd | 10 +++++----- 8 files changed, 50 insertions(+), 50 deletions(-)
Title: Co-Occurrence Network
Description: Read and preprocess fasta format data, and construct the co-occurrence network for downstream analyses. This R package is to construct the co-occurrence network with the algorithm developed by Du (2008) <DOI:10.1101/gr.6969007>. It could be used to transform the data with high-dimension, such as DNA or protein sequence, into co-occurrence networks. Co-occurrence network could not only capture the co-variation pattern between variables, such as the positions in DNA or protein sequences, but also reflect the relationship between samples. Although it is originally used in DNA and protein sequences, it could be also used to other kinds of data, such as SNP.
Author: Yuanqiang Zou <jerrytsou2001@gmail.com>, Yousong Peng <pys2013@hnu.edu.cn> and Taijiao Jiang <taijiao@moon.ibp.ac.cn>
Maintainer: Yuanqiang Zou <jerrytsou2001@gmail.com>
Diff between cooccurNet versions 0.1.2 dated 2016-09-18 and 0.1.3 dated 2016-09-20
DESCRIPTION | 8 - MD5 | 12 +- R/datapreprocess.R | 50 ++++++----- R/gennetwork.R | 231 ++++++++++++++++++++++++++++++++++++++--------------- R/networkpvalue.R | 24 +++-- R/pubfuncs.R | 47 +++++++--- R/readfasta.R | 6 - 7 files changed, 254 insertions(+), 124 deletions(-)
Title: R/Package Version Check
Description: Check latest release version of R and R package (both in 'CRAN' or 'Bioconductor').
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between rvcheck versions 0.0.2 dated 2016-06-17 and 0.0.5 dated 2016-09-20
DESCRIPTION | 8 +++--- MD5 | 17 +++++++------ NAMESPACE | 4 +++ NEWS |only R/check_pkg.R | 63 ++++++++++++++++++++++++++++++++++++++++++------- R/update_all.R | 66 ++++++++++++++++++++++++++++++++++++++++------------ README.md |only man/check_bioc.Rd | 3 ++ man/check_cran.Rd | 3 ++ man/check_github.Rd |only man/update_all.Rd | 7 ++++- 11 files changed, 136 insertions(+), 35 deletions(-)
Title: Fitting High Dimensional Linear Models
Description: Mimics the lm() function found in the package stats to fit
high dimensional regression models with point estimates,
standard errors, and p-values. Methods for printing and
summarizing the results are given.
Author: Taylor B. Arnold
Maintainer: Taylor B. Arnold <taylor.b.arnold@gmail.com>
Diff between hdlm versions 1.2 dated 2013-10-25 and 1.3.1 dated 2016-09-20
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NAMESPACE | 15 ++++++++++++++- build/vignette.rds |binary src/util_blasso.cpp | 14 +++++++------- 5 files changed, 31 insertions(+), 18 deletions(-)
Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Description: Package for Bayesian Model Averaging in linear models and
generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
mixture of g-priors from Liang et al (2008)
<DOI:10.1198/016214507000001337>
for linear models or mixtures of g-priors in GLMs of Li and Clyde (2015)
<http://arxiv.org/abs/1503.06913>. Other model
selection criteria include AIC, BIC and Empirical Bayes estimates of g.
Sampling probabilities may be updated based on the sampled models
using Sampling w/out Replacement or an efficient MCMC algorithm
samples models using the BAS tree structure as an efficient hash table.
Uniform priors over all models or beta-binomial prior distributions on
model size are allowed, and for large p truncated priors on the model
space may be used. The user may force variables to always be included.
Details behind the sampling algorithm are provided in
Clyde, Ghosh and Littman (2010) <DOI:10.1198/jcgs.2010.09049>. The
DOI for the stable package release is <DOI:10.5281/zenodo.154457>.
This material is based upon work supported by the National Science
Foundation under Grant DMS-1106891. Any opinions, findings, and
conclusions or recommendations expressed in this material are those of
the author(s) and do not necessarily reflect the views of the
National Science Foundation.
Author: Merlise Clyde [aut, cre, cph],
Michael Littman [ctb],
Quanli Wang [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb]
Maintainer: Merlise Clyde <clyde@stat.duke.edu>
Diff between BAS versions 1.4.0 dated 2016-08-27 and 1.4.1 dated 2016-09-20
DESCRIPTION | 55 +++++++++++++++++++++++------------------- MD5 | 22 ++++++++--------- NEWS.md | 11 ++++++++ R/bas.R | 58 +++++++++++++++++---------------------------- R/bas.gglm.R | 36 ++++++++++++++------------- demo/BAS.USCrime.R | 8 ++++-- inst/doc/BAS-vignette.Rmd | 3 ++ inst/doc/BAS-vignette.html | 49 +++++++++++++++++++------------------- man/bas.Rd | 37 ++++++++++++++++++++-------- man/bas.glm.Rd | 11 +++----- man/cv.summary.bma.Rd | 5 ++- vignettes/BAS-vignette.Rmd | 3 ++ 12 files changed, 165 insertions(+), 133 deletions(-)