Title: Multi-Scale Motions Separation with Kolmogorov-Zurbenko
Periodogram Signals
Description: Separation of wave motions in different scales and directions based on
Kolmogorov-Zurbenko 2D periodograms and directional periodograms.
Author: Ming Luo <ml226662@gmail.com> and Igor Zurbenko <IZurbenko@albany.edu>
Maintainer: Ming Luo <ml226662@gmail.com>
Diff between kzfs versions 1.0.0.12 dated 2016-08-22 and 1.0.1.5 dated 2016-09-23
kzfs-1.0.0.12/kzfs/man/inks.Rd |only kzfs-1.0.0.12/kzfs/man/kzprj.Rd |only kzfs-1.0.1.5/kzfs/DESCRIPTION | 15 kzfs-1.0.1.5/kzfs/MD5 | 43 + kzfs-1.0.1.5/kzfs/NAMESPACE | 26 - kzfs-1.0.1.5/kzfs/R/drsp.R | 877 ++----------------------------------- kzfs-1.0.1.5/kzfs/R/drsub.R | 162 +++--- kzfs-1.0.1.5/kzfs/R/eval.R |only kzfs-1.0.1.5/kzfs/R/gtwv.R | 161 +++++- kzfs-1.0.1.5/kzfs/R/inks.R | 40 - kzfs-1.0.1.5/kzfs/R/kz.ft.R |only kzfs-1.0.1.5/kzfs/R/kzfs.R | 22 kzfs-1.0.1.5/kzfs/R/kzmd.R | 10 kzfs-1.0.1.5/kzfs/R/kzp2.R | 33 - kzfs-1.0.1.5/kzfs/R/smpg.R | 143 ++---- kzfs-1.0.1.5/kzfs/R/valid.R |only kzfs-1.0.1.5/kzfs/man/eval.Rd |only kzfs-1.0.1.5/kzfs/man/getwave.Rd | 27 - kzfs-1.0.1.5/kzfs/man/kz.ft.Rd |only kzfs-1.0.1.5/kzfs/man/kz.rc2.Rd |only kzfs-1.0.1.5/kzfs/man/kzfs.Rd | 19 kzfs-1.0.1.5/kzfs/man/kzp2.Rd | 15 kzfs-1.0.1.5/kzfs/man/kzpdr.Rd | 116 +--- kzfs-1.0.1.5/kzfs/man/smpg.Rd | 95 +--- kzfs-1.0.1.5/kzfs/man/spikes.Rd |only kzfs-1.0.1.5/kzfs/man/tolerance.Rd |only kzfs-1.0.1.5/kzfs/man/valid.Rd |only kzfs-1.0.1.5/kzfs/src/kzpg.c | 2 28 files changed, 524 insertions(+), 1282 deletions(-)
Title: Search 'Vertnet', a 'Database' of Vertebrate Specimen Records
Description: Retrieve, map and summarize data from the 'VertNet.org' archives.
Functions allow searching by many parameters, including 'taxonomic' names,
places, and dates. In addition, there is an interface for conducting spatially
delimited searches, and another for requesting large 'datasets' via email.
Author: Scott Chamberlain [aut, cre], Chris Ray [aut], Vijay Barve [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rvertnet versions 0.4.4 dated 2016-04-14 and 0.5.0 dated 2016-09-23
DESCRIPTION | 8 MD5 | 53 +-- NAMESPACE | 8 NEWS.md |only R/bigsearch.R | 6 R/rvertnet-package.R | 20 - R/searchbyterm.R | 52 ++- R/vert_id.R | 3 R/vertdump.R | 2 R/vertmap.R | 4 R/vertsearch.R | 9 R/yyy.R | 43 +-- R/zzz.R | 47 ++- README.md | 75 ++--- build/vignette.rds |binary inst/doc/rvertnet_vignette.Rmd | 443 ++++++++++++++++---------------- inst/doc/rvertnet_vignette.html | 443 ++++++++++++++++---------------- inst/vign/figure/unnamed-chunk-13-1.png |binary inst/vign/rvertnet_vignette.Rmd | 1 inst/vign/rvertnet_vignette.md | 443 ++++++++++++++++---------------- man/bigsearch.Rd | 13 man/rvertnet-package.Rd | 14 - man/searchbyterm.Rd | 31 +- man/vert_id.Rd | 3 man/vertsearch.Rd | 4 tests/testthat/test-bigsearch.R | 6 tests/testthat/test-searchbyterm.R | 2 vignettes/rvertnet_vignette.Rmd | 443 ++++++++++++++++---------------- 28 files changed, 1173 insertions(+), 1003 deletions(-)
Title: Methods for Evaluating Principal Surrogates of Treatment
Response
Description: Contains the core methods for the evaluation of principal
surrogates in a single clinical trial. Provides a flexible interface for
defining models for the risk given treatment and the surrogate, the models
for integration over the missing counterfactual surrogate responses, and the
estimation methods. Estimated maximum likelihood and pseudo-score can be used
for estimation, and the bootstrap for inference. A variety of post-estimation
summary methods are provided, including print, summary, plot, and testing.
Author: Michael C Sachs [aut, cre],
Erin E Gabriel [aut]
Maintainer: Michael C Sachs <sachsmc@gmail.com>
Diff between pseval versions 1.2.3 dated 2016-08-03 and 1.3.0 dated 2016-09-23
pseval-1.2.3/pseval/man/VE.Rd |only pseval-1.2.3/pseval/vignettes/introduction_cache |only pseval-1.2.3/pseval/vignettes/introduction_files |only pseval-1.3.0/pseval/DESCRIPTION | 8 pseval-1.3.0/pseval/MD5 | 59 pseval-1.3.0/pseval/NAMESPACE | 121 pseval-1.3.0/pseval/NEWS | 9 pseval-1.3.0/pseval/R/design.R | 302 +- pseval-1.3.0/pseval/R/print.R | 32 pseval-1.3.0/pseval/R/pseval-constructors.R | 285 +- pseval-1.3.0/pseval/R/risk.R | 819 +++--- pseval-1.3.0/pseval/R/summarize.R | 619 ++-- pseval-1.3.0/pseval/README.md | 48 pseval-1.3.0/pseval/inst/doc/cheatsheet.pdf |only pseval-1.3.0/pseval/inst/doc/introduction.R | 91 pseval-1.3.0/pseval/inst/doc/introduction.Rmd | 917 +++--- pseval-1.3.0/pseval/inst/doc/introduction.html | 1321 ++++++--- pseval-1.3.0/pseval/man/TE.Rd |only pseval-1.3.0/pseval/man/add_riskmodel.Rd | 67 pseval-1.3.0/pseval/man/calc_risk.Rd | 128 pseval-1.3.0/pseval/man/empirical_TE.Rd |only pseval-1.3.0/pseval/man/empirical_VE.Rd | 34 pseval-1.3.0/pseval/man/plot.psdesign.Rd | 104 pseval-1.3.0/pseval/man/risk_continuous.Rd |only pseval-1.3.0/pseval/man/summary.psdesign.Rd | 48 pseval-1.3.0/pseval/tests/testthat/test-bootstrap.R | 66 pseval-1.3.0/pseval/tests/testthat/test-estimation.R | 319 +- pseval-1.3.0/pseval/vignettes/introduction.Rmd | 917 +++--- pseval-1.3.0/pseval/vignettes/psreferences.bib | 2558 ++++++++++--------- 29 files changed, 4937 insertions(+), 3935 deletions(-)
Title: Functions for Epidemiological Analysis using Population Data
Description: Enables computation of various epidemiological statistics where the use of population data such as population counts and hazards is required.
Relatively high computation speed achieved by using data.table.
Author: Joonas Miettinen [aut, cre],
Matti Rantanen [aut],
Karri Seppa [ctb]
Maintainer: Joonas Miettinen <joonas.miettinen@cancer.fi>
Diff between popEpi versions 0.3.1 dated 2016-04-25 and 0.4.0 dated 2016-09-23
popEpi-0.3.1/popEpi/R/sir_devaus.R |only popEpi-0.3.1/popEpi/man/print.sir.Rd |only popEpi-0.3.1/popEpi/man/print.sirspline.Rd |only popEpi-0.3.1/popEpi/man/shift.var.Rd |only popEpi-0.4.0/popEpi/DESCRIPTION | 12 popEpi-0.4.0/popEpi/MD5 | 231 popEpi-0.4.0/popEpi/NAMESPACE | 142 popEpi-0.4.0/popEpi/NEWS | 243 popEpi-0.4.0/popEpi/NEWS.md | 207 popEpi-0.4.0/popEpi/R/S3_definitions.R | 2666 ++++---- popEpi-0.4.0/popEpi/R/aggregating.R | 1215 +-- popEpi-0.4.0/popEpi/R/data_document.R | 290 popEpi-0.4.0/popEpi/R/direct_adjusting.R | 309 popEpi-0.4.0/popEpi/R/evaluation.R |only popEpi-0.4.0/popEpi/R/flexyargs.R | 333 - popEpi-0.4.0/popEpi/R/fractional_years.R |only popEpi-0.4.0/popEpi/R/incidence_rates.R | 735 +- popEpi-0.4.0/popEpi/R/incidence_rates_utils.R |only popEpi-0.4.0/popEpi/R/lexpand.R | 1864 +++--- popEpi-0.4.0/popEpi/R/lexpand2.R |only popEpi-0.4.0/popEpi/R/lifetime_function.R | 564 - popEpi-0.4.0/popEpi/R/ltable.R | 503 - popEpi-0.4.0/popEpi/R/mean_survival.R | 1280 ++-- popEpi-0.4.0/popEpi/R/popEpi_package.r | 62 popEpi-0.4.0/popEpi/R/pophaz.R | 136 popEpi-0.4.0/popEpi/R/prevalence.R |only popEpi-0.4.0/popEpi/R/relative_poisson.R | 1015 +-- popEpi-0.4.0/popEpi/R/relative_poisson_net_survival.R | 350 - popEpi-0.4.0/popEpi/R/sir.R |only popEpi-0.4.0/popEpi/R/sir_utils.R |only popEpi-0.4.0/popEpi/R/splitLexisDT.R | 483 - popEpi-0.4.0/popEpi/R/splitMulti.R | 466 - popEpi-0.4.0/popEpi/R/splitting_utility_functions.R | 2182 +++---- popEpi-0.4.0/popEpi/R/startup_message.R | 38 popEpi-0.4.0/popEpi/R/survival_aggregated.R | 1942 ++---- popEpi-0.4.0/popEpi/R/survival_lexis.R | 1066 +-- popEpi-0.4.0/popEpi/R/survival_utility_functions.R | 1262 ++-- popEpi-0.4.0/popEpi/R/utility_functions.R | 3097 ++++------ popEpi-0.4.0/popEpi/R/weighted_table.R | 1320 ++-- popEpi-0.4.0/popEpi/README.md | 382 - popEpi-0.4.0/popEpi/build/vignette.rds |binary popEpi-0.4.0/popEpi/inst/doc/sir.R | 128 popEpi-0.4.0/popEpi/inst/doc/sir.html | 530 - popEpi-0.4.0/popEpi/inst/doc/survtab_examples.R | 338 - popEpi-0.4.0/popEpi/inst/doc/survtab_examples.html | 749 +- popEpi-0.4.0/popEpi/man/ICSS.Rd | 64 popEpi-0.4.0/popEpi/man/Lexis_fpa.Rd |only popEpi-0.4.0/popEpi/man/RPL.Rd | 40 popEpi-0.4.0/popEpi/man/adjust.Rd | 50 popEpi-0.4.0/popEpi/man/aggre.Rd | 368 - popEpi-0.4.0/popEpi/man/all_names_present.Rd | 64 popEpi-0.4.0/popEpi/man/as.Date.yrs.Rd | 84 popEpi-0.4.0/popEpi/man/as.aggre.Rd | 140 popEpi-0.4.0/popEpi/man/as.data.frame.ratetable.Rd | 67 popEpi-0.4.0/popEpi/man/as.data.table.ratetable.Rd | 68 popEpi-0.4.0/popEpi/man/cast_simple.Rd | 102 popEpi-0.4.0/popEpi/man/cut_bound.Rd | 58 popEpi-0.4.0/popEpi/man/direct_standardization.Rd | 301 popEpi-0.4.0/popEpi/man/fac2num.Rd | 76 popEpi-0.4.0/popEpi/man/flexible_argument.Rd | 335 - popEpi-0.4.0/popEpi/man/get.yrs.Rd | 146 popEpi-0.4.0/popEpi/man/is.Date.Rd | 83 popEpi-0.4.0/popEpi/man/is_leap_year.Rd | 58 popEpi-0.4.0/popEpi/man/lexpand.Rd | 731 +- popEpi-0.4.0/popEpi/man/lines.sirspline.Rd | 84 popEpi-0.4.0/popEpi/man/lines.survmean.Rd | 68 popEpi-0.4.0/popEpi/man/lines.survtab.Rd | 116 popEpi-0.4.0/popEpi/man/longDF2ratetable.Rd | 62 popEpi-0.4.0/popEpi/man/lower_bound.Rd | 38 popEpi-0.4.0/popEpi/man/ltable.Rd | 289 popEpi-0.4.0/popEpi/man/makeWeightsDT.Rd | 307 popEpi-0.4.0/popEpi/man/na2zero.Rd | 56 popEpi-0.4.0/popEpi/man/plot.rate.Rd |only popEpi-0.4.0/popEpi/man/plot.sir.Rd | 152 popEpi-0.4.0/popEpi/man/plot.sirspline.Rd | 92 popEpi-0.4.0/popEpi/man/plot.survmean.Rd | 74 popEpi-0.4.0/popEpi/man/plot.survtab.Rd | 122 popEpi-0.4.0/popEpi/man/poisson.ci.Rd | 54 popEpi-0.4.0/popEpi/man/popEpi.Rd | 73 popEpi-0.4.0/popEpi/man/pophaz.Rd | 116 popEpi-0.4.0/popEpi/man/popmort.Rd | 49 popEpi-0.4.0/popEpi/man/prepExpo.Rd | 212 popEpi-0.4.0/popEpi/man/print.aggre.Rd | 56 popEpi-0.4.0/popEpi/man/print.rate.Rd |only popEpi-0.4.0/popEpi/man/print.survtab.Rd | 62 popEpi-0.4.0/popEpi/man/rate.Rd | 203 popEpi-0.4.0/popEpi/man/rate_ratio.Rd |only popEpi-0.4.0/popEpi/man/relpois.Rd | 225 popEpi-0.4.0/popEpi/man/relpois_ag.Rd | 174 popEpi-0.4.0/popEpi/man/robust_values.Rd | 92 popEpi-0.4.0/popEpi/man/rpcurve.Rd | 140 popEpi-0.4.0/popEpi/man/setaggre.Rd | 93 popEpi-0.4.0/popEpi/man/setclass.Rd | 56 popEpi-0.4.0/popEpi/man/setcolsnull.Rd | 66 popEpi-0.4.0/popEpi/man/sibr.Rd | 69 popEpi-0.4.0/popEpi/man/sir.Rd | 378 - popEpi-0.4.0/popEpi/man/sir_ratio.Rd |only popEpi-0.4.0/popEpi/man/sire.Rd | 67 popEpi-0.4.0/popEpi/man/sirspline.Rd | 275 popEpi-0.4.0/popEpi/man/splitLexisDT.Rd | 174 popEpi-0.4.0/popEpi/man/splitMulti.Rd | 259 popEpi-0.4.0/popEpi/man/stdpop101.Rd | 45 popEpi-0.4.0/popEpi/man/stdpop18.Rd | 47 popEpi-0.4.0/popEpi/man/summary.aggre.Rd | 61 popEpi-0.4.0/popEpi/man/summary.survtab.Rd | 169 popEpi-0.4.0/popEpi/man/survmean.Rd | 553 - popEpi-0.4.0/popEpi/man/survtab.Rd |only popEpi-0.4.0/popEpi/man/survtab_ag.Rd | 788 +- popEpi-0.4.0/popEpi/man/try2int.Rd | 56 popEpi-0.4.0/popEpi/tests/testthat.R | 8 popEpi-0.4.0/popEpi/tests/testthat/test_aggre.R | 462 - popEpi-0.4.0/popEpi/tests/testthat/test_expo.R | 94 popEpi-0.4.0/popEpi/tests/testthat/test_lexpand.R | 642 +- popEpi-0.4.0/popEpi/tests/testthat/test_mean_survival.R | 737 +- popEpi-0.4.0/popEpi/tests/testthat/test_rate.R | 483 - popEpi-0.4.0/popEpi/tests/testthat/test_relpois_mean_curve.R | 136 popEpi-0.4.0/popEpi/tests/testthat/test_sir.R | 410 - popEpi-0.4.0/popEpi/tests/testthat/test_splitLexisDT.R | 238 popEpi-0.4.0/popEpi/tests/testthat/test_splitMulti.R | 198 popEpi-0.4.0/popEpi/tests/testthat/test_survtab_bad_surv_ints.R | 190 popEpi-0.4.0/popEpi/tests/testthat/test_survtab_observed.R | 259 popEpi-0.4.0/popEpi/tests/testthat/test_survtab_relative.R | 389 - popEpi-0.4.0/popEpi/tests/testthat/test_survtab_usage.R | 647 +- popEpi-0.4.0/popEpi/tests/testthat/test_utils.R | 801 +- popEpi-0.4.0/popEpi/tests/testthat/test_weighter.R | 278 125 files changed, 20804 insertions(+), 20215 deletions(-)
Title: Miscellaneous Functions from M. Kohl
Description: Contains several functions for statistical data analysis; e.g. for sample size and power calculations, computation of confidence intervals, and generation of similarity matrices.
Author: Matthias Kohl [aut, cre]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between MKmisc versions 0.991 dated 2016-01-06 and 0.993 dated 2016-09-23
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 1 + NEWS | 11 +++++++++++ R/quantileCI.R | 17 +++++++++++++---- man/0MKmisc-package.Rd | 4 ++-- man/quantileCI.Rd | 25 ++++++++++++++++--------- 7 files changed, 53 insertions(+), 25 deletions(-)
Title: The MBESS R Package
Description: Implements methods that useful in designing research and analyzing data, with
particular emphasis on methods that are developed for or used within the behavioral,
educational, and social sciences (broadly defined). That being said, many of the methods
implemented within MBESS are applicable to a wide variety of disciplines. MBESS has a
suite of functions for a variety of related topics, such as effect sizes, confidence intervals
for effect sizes (including standardized effect sizes and noncentral effect sizes), sample size
planning (from the accuracy in parameter estimation [AIPE], power analytic, equivalence, and
minimum-risk point estimation perspectives), mediation analysis, various properties of
distributions, and a variety of utility functions. MBESS (pronounced 'em-bes') was originally
an acronym for 'Methods for the Behavioral, Educational, and Social Sciences,' but at this
point MBESS contains methods applicable and used in a wide variety of fields and is an
orphan acronym, in the sense that what was an acronym is now literally its name. MBESS has
greatly benefited from others, see <http://nd.edu/~kkelley/site/MBESS.html> for a detailed
list of those that have contributed and other details.
Author: Ken Kelley [aut, cre]
Maintainer: Ken Kelley <kkelley@nd.edu>
Diff between MBESS versions 4.0.0 dated 2016-02-17 and 4.1.0 dated 2016-09-23
DESCRIPTION | 12 - MD5 | 178 ++++++++++++------------ NAMESPACE | 4 R/ci.c.R | 6 R/ci.cc.R |only R/ci.pvaf.R | 96 ++++++------- R/ci.reliability.R | 2 R/ci.sc.R | 7 R/ci.sc.ancova.R | 2 R/ci.snr.R | 78 +++++----- R/ci.srsnr.R | 80 +++++------ R/mediation.R | 1 R/ss.aipe.c.R | 98 ++++++------- R/ss.aipe.reg.coef.R | 34 ++-- R/transform_Z.r.R |only R/transform_r.Z.R |only R/vit.fitted.R | 20 +- man/CFA.1.Rd | 4 man/Cor.Mat.Lomax.Rd | 116 ++++++++-------- man/Cor.Mat.MM.Rd | 120 ++++++++-------- man/F.and.R2.Noncentral.Conversion.Rd | 98 ++++++------- man/MBESS-package.Rd | 4 man/Sigma.2.SigmaStar.Rd | 8 - man/ancova.random.data.Rd | 4 man/ci.R.Rd | 4 man/ci.R2.Rd | 6 man/ci.c.Rd | 4 man/ci.c.ancova.Rd | 6 man/ci.cc.Rd |only man/ci.cv.Rd | 2 man/ci.rc.Rd | 13 + man/ci.reg.coef.Rd | 12 - man/ci.reliability.Rd | 21 +- man/ci.sc.Rd | 4 man/ci.sm.Rd | 4 man/ci.smd.c.Rd | 8 - man/ci.snr.Rd | 2 man/ci.src.Rd | 6 man/conf.limits.nc.chisq.Rd | 2 man/conf.limits.ncf.Rd | 8 - man/conf.limits.nct.Rd | 4 man/covmat.from.cfm.Rd | 100 ++++++------- man/cv.Rd | 2 man/intr.plot.2d.Rd | 4 man/intr.plot.Rd | 20 +- man/mediation.Rd | 20 +- man/mediation.effect.bar.plot.Rd | 12 - man/mediation.effect.plot.Rd | 24 +-- man/mr.cv.Rd | 16 +- man/mr.smd.Rd | 18 +- man/power.density.equivalence.md.Rd | 12 - man/power.equivalence.md.Rd | 18 +- man/power.equivalence.md.plot.Rd | 166 +++++++++++------------ man/signal.to.noise.R2.Rd | 90 ++++++------ man/smd.Rd | 166 +++++++++++------------ man/ss.aipe.R2.Rd | 30 +--- man/ss.aipe.R2.sensitivity.Rd | 16 +- man/ss.aipe.c.Rd | 8 - man/ss.aipe.cv.sensitivity.Rd | 110 +++++++-------- man/ss.aipe.pcm.Rd | 1 man/ss.aipe.rc.Rd | 170 +++++++++++------------ man/ss.aipe.rc.sensitivity.Rd | 22 +-- man/ss.aipe.reg.coef.Rd | 14 - man/ss.aipe.reg.coef.sensitivity.Rd | 14 - man/ss.aipe.reliability.Rd | 10 - man/ss.aipe.rmsea.Rd | 2 man/ss.aipe.rmsea.sensitivity.Rd | 8 - man/ss.aipe.sc.Rd | 16 +- man/ss.aipe.sc.ancova.Rd | 17 +- man/ss.aipe.sc.ancova.sensitivity.Rd | 17 +- man/ss.aipe.sc.sensitivity.Rd | 16 +- man/ss.aipe.sem.path.Rd | 6 man/ss.aipe.sem.path.sensitiv.Rd | 6 man/ss.aipe.sm.Rd | 16 +- man/ss.aipe.sm.sensitivity.Rd | 222 +++++++++++++++--------------- man/ss.aipe.smd.Rd | 156 ++++++++++----------- man/ss.aipe.smd.sensitivity.Rd | 244 +++++++++++++++++----------------- man/ss.aipe.src.Rd | 8 - man/ss.aipe.src.sensitivity.Rd | 30 ++-- man/ss.power.R2.Rd | 102 +++++++------- man/ss.power.pcm.Rd | 2 man/ss.power.rc.Rd | 12 - man/ss.power.reg.coef.Rd | 10 - man/ss.power.sem.Rd | 148 ++++++++++---------- man/ssAIPECRD.Rd | 2 man/ssAIPECRDES.Rd | 2 man/t.and.smd.conversion.Rd | 72 +++++----- man/theta.2.Sigma.theta.Rd | 8 - man/transform_Z.r.Rd |only man/transform_r.Z.Rd |only man/verify.ss.aipe.R2.Rd | 76 +++++----- man/vit.Rd | 2 man/vit.fitted.Rd | 136 +++++++++--------- 93 files changed, 1744 insertions(+), 1733 deletions(-)
Title: Import and Export 'SPSS', 'Stata' and 'SAS' Files
Description: Import foreign statistical formats into R via the embedded
'ReadStat' C library (https://github.com/WizardMac/ReadStat).
Author: Hadley Wickham [aut, cre],
Evan Miller [aut, cph] (Author of included ReadStat code),
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between haven versions 0.2.1 dated 2016-07-19 and 1.0.0 dated 2016-09-23
haven-0.2.1/haven/R/hhmm.R |only haven-0.2.1/haven/R/utils.R |only haven-0.2.1/haven/man/hms.Rd |only haven-0.2.1/haven/src/CKHashTable.c |only haven-0.2.1/haven/src/CKHashTable.h |only haven-0.2.1/haven/src/readstat.h |only haven-0.2.1/haven/src/readstat_bits.c |only haven-0.2.1/haven/src/readstat_bits.h |only haven-0.2.1/haven/src/readstat_convert.c |only haven-0.2.1/haven/src/readstat_convert.h |only haven-0.2.1/haven/src/readstat_dta.c |only haven-0.2.1/haven/src/readstat_dta.h |only haven-0.2.1/haven/src/readstat_dta_read.c |only haven-0.2.1/haven/src/readstat_dta_write.c |only haven-0.2.1/haven/src/readstat_error.c |only haven-0.2.1/haven/src/readstat_iconv.h |only haven-0.2.1/haven/src/readstat_io.c |only haven-0.2.1/haven/src/readstat_io.h |only haven-0.2.1/haven/src/readstat_parser.c |only haven-0.2.1/haven/src/readstat_por.c |only haven-0.2.1/haven/src/readstat_por_parse.c |only haven-0.2.1/haven/src/readstat_por_parse.h |only haven-0.2.1/haven/src/readstat_sas.c |only haven-0.2.1/haven/src/readstat_sas.h |only haven-0.2.1/haven/src/readstat_sav.c |only haven-0.2.1/haven/src/readstat_sav.h |only haven-0.2.1/haven/src/readstat_sav_parse.c |only haven-0.2.1/haven/src/readstat_sav_parse.h |only haven-0.2.1/haven/src/readstat_sav_read.c |only haven-0.2.1/haven/src/readstat_sav_write.c |only haven-0.2.1/haven/src/readstat_spss.c |only haven-0.2.1/haven/src/readstat_spss.h |only haven-0.2.1/haven/src/readstat_spss_parse.c |only haven-0.2.1/haven/src/readstat_spss_parse.h |only haven-0.2.1/haven/src/readstat_value.c |only haven-0.2.1/haven/src/readstat_writer.c |only haven-0.2.1/haven/src/readstat_writer.h |only haven-0.2.1/haven/tests/testthat/test-write.R |only haven-1.0.0/haven/DESCRIPTION | 17 haven-1.0.0/haven/LICENSE | 2 haven-1.0.0/haven/MD5 | 187 ++-- haven-1.0.0/haven/NAMESPACE | 35 haven-1.0.0/haven/NEWS.md |only haven-1.0.0/haven/R/RcppExports.R | 42 - haven-1.0.0/haven/R/as_factor.R | 99 ++ haven-1.0.0/haven/R/haven.R | 188 +++- haven-1.0.0/haven/R/labelled.R | 129 +-- haven-1.0.0/haven/R/labelled_spss.R |only haven-1.0.0/haven/R/tagged_na.R |only haven-1.0.0/haven/R/update.R |only haven-1.0.0/haven/R/zap_empty.R | 1 haven-1.0.0/haven/R/zap_formats.R |only haven-1.0.0/haven/R/zap_labels.R |only haven-1.0.0/haven/R/zap_missing.R |only haven-1.0.0/haven/R/zzz.R |only haven-1.0.0/haven/README.md | 62 - haven-1.0.0/haven/build/vignette.rds |binary haven-1.0.0/haven/inst/doc/datetimes.html | 4 haven-1.0.0/haven/inst/doc/semantics.R |only haven-1.0.0/haven/inst/doc/semantics.Rmd |only haven-1.0.0/haven/inst/doc/semantics.html |only haven-1.0.0/haven/inst/examples |only haven-1.0.0/haven/man/as_factor.Rd | 44 + haven-1.0.0/haven/man/labelled.Rd | 30 haven-1.0.0/haven/man/labelled_spss.Rd |only haven-1.0.0/haven/man/print_labels.Rd |only haven-1.0.0/haven/man/read_dta.Rd | 34 haven-1.0.0/haven/man/read_sas.Rd | 31 haven-1.0.0/haven/man/read_spss.Rd | 35 haven-1.0.0/haven/man/tagged_na.Rd |only haven-1.0.0/haven/man/zap_empty.Rd | 4 haven-1.0.0/haven/man/zap_formats.Rd |only haven-1.0.0/haven/man/zap_labels.Rd |only haven-1.0.0/haven/man/zap_missing.Rd |only haven-1.0.0/haven/src/DfReader.cpp | 577 ++++++++++---- haven-1.0.0/haven/src/DfWriter.cpp | 235 +++-- haven-1.0.0/haven/src/Makevars |only haven-1.0.0/haven/src/Makevars.win | 5 haven-1.0.0/haven/src/RcppExports.cpp | 163 ++- haven-1.0.0/haven/src/haven_types.h | 104 ++ haven-1.0.0/haven/src/readstat |only haven-1.0.0/haven/src/tagged_na.c |only haven-1.0.0/haven/src/tagged_na.h |only haven-1.0.0/haven/tests/testthat/datetime-d.dta |only haven-1.0.0/haven/tests/testthat/hadley.zip |only haven-1.0.0/haven/tests/testthat/helper-lump.R |only haven-1.0.0/haven/tests/testthat/helper-roundtrip.R |only haven-1.0.0/haven/tests/testthat/labelled-output.txt |only haven-1.0.0/haven/tests/testthat/labelled-spss-output.txt |only haven-1.0.0/haven/tests/testthat/notes.dta |only haven-1.0.0/haven/tests/testthat/tagged-na-double.dta |only haven-1.0.0/haven/tests/testthat/tagged-na-int.dta |only haven-1.0.0/haven/tests/testthat/tagged-na.sas7bcat |only haven-1.0.0/haven/tests/testthat/tagged-na.sas7bdat |only haven-1.0.0/haven/tests/testthat/tagged-na.txt |only haven-1.0.0/haven/tests/testthat/test-as-factor.R |only haven-1.0.0/haven/tests/testthat/test-labelled.R | 41 haven-1.0.0/haven/tests/testthat/test-labelled_spss.R |only haven-1.0.0/haven/tests/testthat/test-read-connection.R |only haven-1.0.0/haven/tests/testthat/test-read-sas.R | 12 haven-1.0.0/haven/tests/testthat/test-read-sav.R | 71 + haven-1.0.0/haven/tests/testthat/test-read-stata.R | 46 + haven-1.0.0/haven/tests/testthat/test-replace_with.R |only haven-1.0.0/haven/tests/testthat/test-tagged_na.R |only haven-1.0.0/haven/tests/testthat/test-write-dta.R |only haven-1.0.0/haven/tests/testthat/test-write-sav.R |only haven-1.0.0/haven/tests/testthat/test-zap-empty.R |only haven-1.0.0/haven/tests/testthat/test-zap_labels.R |only haven-1.0.0/haven/tests/testthat/test-zap_missing.R |only haven-1.0.0/haven/tests/testthat/types.dta |binary haven-1.0.0/haven/tests/testthat/write-sas.R |only haven-1.0.0/haven/vignettes/semantics.Rmd |only 112 files changed, 1627 insertions(+), 571 deletions(-)
Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to view and analyze seismic data, via spectrum analysis, wavelet transforms, particle motion, hodograms. Includes general time-series tools, plotting, filtering, interactive display.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between RSEIS versions 3.6-1 dated 2016-08-20 and 3.6-8 dated 2016-09-23
DESCRIPTION | 8 MD5 | 38 ++- R/DECIMATE.SEISN.R | 4 R/DISPLACE.SEISN.R | 10 - R/FILT.SEISN.R | 11 - R/FILT.spread.R | 7 R/JSEGY.seis.R | 6 R/butfilt.R | 15 + R/choosfilt.R | 8 R/fixNA.R |only R/pickit.R | 4 R/plotseis24.R | 2 man/DECIMATE.SEISN.Rd | 5 man/DISPLACE.SEISN.Rd | 6 man/FILT.SEISN.Rd | 8 man/FILT.spread.Rd | 4 man/butfilt.Rd | 38 +++ man/fixNA.Rd |only man/grotseis.Rd | 29 ++- man/rdistaz.Rd | 6 src/LLNfilt.c | 481 +++++++++++++++++++++++++------------------------- 21 files changed, 380 insertions(+), 310 deletions(-)
Title: Analysis and Search of Crossover Designs
Description: Package Crossover provides different crossover designs from
combinatorial or search algorithms as well as from literature and a GUI to
access them.
Author: Kornelius Rohmeyer
Maintainer: Kornelius Rohmeyer <rohmeyer@small-projects.de>
Diff between Crossover versions 0.1-15 dated 2015-07-29 and 0.1-16 dated 2016-09-23
Crossover-0.1-15/Crossover/inst/unitTests |only Crossover-0.1-15/Crossover/tests/doRUnit.R |only Crossover-0.1-16/Crossover/DESCRIPTION | 13 + Crossover-0.1-16/Crossover/MD5 | 74 +++++----- Crossover-0.1-16/Crossover/NAMESPACE | 2 Crossover-0.1-16/Crossover/NEWS | 7 Crossover-0.1-16/Crossover/R/doRUnitTests.R | 38 ----- Crossover-0.1-16/Crossover/R/startGUIs.R | 21 ++ Crossover-0.1-16/Crossover/build/vignette.rds |binary Crossover-0.1-16/Crossover/inst/doc/Crossover.R | 15 -- Crossover-0.1-16/Crossover/inst/doc/Crossover.Rnw | 13 - Crossover-0.1-16/Crossover/inst/doc/Crossover.pdf |binary Crossover-0.1-16/Crossover/java/org/mutoss/gui/CrossoverGUI.java | 6 Crossover-0.1-16/Crossover/java/org/mutoss/gui/dialogs/ErrorDialogChooseLevel.java | 2 Crossover-0.1-16/Crossover/java/org/mutoss/gui/dialogs/ErrorDialogChooseLevelBase.java | 14 + Crossover-0.1-16/Crossover/man/CrossoverDesign-class.Rd | 8 - Crossover-0.1-16/Crossover/man/CrossoverGUI.Rd | 6 Crossover-0.1-16/Crossover/man/CrossoverSearchResult-class.Rd | 4 Crossover-0.1-16/Crossover/man/buildSummaryTable.Rd | 8 - Crossover-0.1-16/Crossover/man/canonicalOrder.Rd | 4 Crossover-0.1-16/Crossover/man/contrMat2.Rd | 8 - Crossover-0.1-16/Crossover/man/design.efficiency.Rd | 6 Crossover-0.1-16/Crossover/man/general.carryover.Rd | 4 Crossover-0.1-16/Crossover/man/getDesign-methods.Rd | 4 Crossover-0.1-16/Crossover/man/getModelNr.Rd | 2 Crossover-0.1-16/Crossover/man/plot-methods.Rd | 4 Crossover-0.1-16/Crossover/man/rcd.Rd | 2 Crossover-0.1-16/Crossover/man/rcdMatrix.Rd | 2 Crossover-0.1-16/Crossover/man/searchCrossOverDesign.Rd | 7 Crossover-0.1-16/Crossover/tests/testthat |only Crossover-0.1-16/Crossover/tests/testthat.R |only Crossover-0.1-16/Crossover/vignettes/Crossover.Rnw | 13 - Crossover-0.1-16/Crossover/vignettes/childs/Search.Rnw | 4 33 files changed, 157 insertions(+), 134 deletions(-)
Title: Preparing Experimental Data for Statistical Analysis
Description: Prepares data for statistical analysis (e.g., analysis of variance
;ANOVA) by enabling the user to easily and quickly merge (using the
file_merge() function) raw data files into one merged table and then
aggregate the merged table (using the prep() function) into a finalized
table while keeping track and summarizing every step of the preparation.
The finalized table contains several possibilities for dependent measures of
the dependent variable. Most suitable when measuring variables in an
interval or ratio scale (e.g., reaction-times) and/or discrete values such
as accuracy. Main functions included are file_merge() and prep(). The
file_merge() function vertically merges individual data files (in a long
format) in which each line is a single observation to one single dataset.
The prep() function aggregates the single dataset according to any
combination of grouping variables (i.e., between-subjects and
within-subjects independent variables, respectively), and returns a data
frame with a number of dependent measures for further analysis for each cell
according to the combination of provided grouping variables. Dependent
measures for each cell include among others means before and after rejecting
all values according to a flexible standard deviation criteria, number of
rejected values according to the flexible standard deviation criteria,
proportions of rejected values according to the flexible standard deviation
criteria, number of values before rejection, means after rejecting values
according to procedures described in Van Selst & Jolicoeur (1994; suitable
when measuring reaction-times), standard deviations, medians, means according
to any percentile (e.g., 0.05, 0.25, 0.75, 0.95) and harmonic means. The data
frame prep() returns can also be exported as a txt file to be used for
statistical analysis in other statistical programs.
Author: Ayala S. Allon [aut, cre],
Roy Luria [aut],
James Grange [ctb],
Nachshon Meiran [ctb]
Maintainer: Ayala S. Allon <ayalaallon@gmail.com>
Diff between prepdat versions 1.0.7 dated 2016-03-02 and 1.0.8 dated 2016-09-23
DESCRIPTION | 8 MD5 | 25 - NAMESPACE | 22 - NEWS.md | 19 + R/file_merge.R | 225 ++++++++++++-- R/finalized_stroopdata.R |only R/prep.R | 635 +++++++++++++++++++++++++++--------------- R/read_data.R | 70 ++-- README.md | 222 +++++++------- data/finalized_stroopdata.rda |only man/file_merge.Rd | 64 +++- man/finalized_stroopdata.Rd |only man/prep.Rd | 161 ++++++---- man/read_data.Rd | 12 tests |only 15 files changed, 942 insertions(+), 521 deletions(-)
Title: Spatial Extreme Value Analysis with the Hierarchical Model of
Reich and Shaby (2012)
Description: Several procedures around a particular hierarchical model for extreme value: the HKEVP of Reich and Shaby (2012) <DOI:10.1214/12-AOAS591>. Simulation, estimation and spatial extrapolation of this model are available for extreme value data. A special case of this process is also handled: the Latent Variable Model of Davison et al. (2012) <DOI:10.1214/11-STS376>.
Author: Quentin Sebille
Maintainer: Quentin Sebille <quentin.sebille@gmail.com>
Diff between hkevp versions 1.1.2 dated 2016-07-08 and 1.1.4 dated 2016-09-23
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 2 +- R/latent.fit.R | 21 +++++++++++++++------ R/mcmc.plot.R | 24 ++++++++++++------------ man/latent.fit.Rd | 21 +++++++++++++++------ src/RcppExports.cpp | 12 ++++++------ src/hkevp.cpp | 52 +++++++++++++++++++++++----------------------------- 8 files changed, 83 insertions(+), 71 deletions(-)
Title: Analysis of Complex Survey Samples
Description: Summary statistics, two-sample tests, rank tests, generalised linear models, cumulative link models, Cox models, loglinear models, and general maximum pseudolikelihood estimation for multistage stratified, cluster-sampled, unequally weighted survey samples. Variances by Taylor series linearisation or replicate weights. Post-stratification, calibration, and raking. Two-phase subsampling designs. Graphics. PPS sampling without replacement. Principal components, factor analysis.
Author: Thomas Lumley
Maintainer: "Thomas Lumley" <t.lumley@auckland.ac.nz>
Diff between survey versions 3.31 dated 2016-08-05 and 3.31-2 dated 2016-09-23
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/chisqsum.R | 20 ++++++-------------- R/svykm.R | 2 +- inst/CITATION | 4 ++-- inst/NEWS | 4 ++++ man/svrepdesign.Rd | 2 +- 7 files changed, 25 insertions(+), 29 deletions(-)
Title: Supplementary Distributions
Description: Ten distributions supplementing those built into R.
Inverse Gauss, Kruskal-Wallis, Kendall's Tau, Friedman's chi
squared, Spearman's rho, maximum F ratio, the Pearson product
moment correlation coefficient, Johnson distributions, normal
scores and generalized hypergeometric distributions. In
addition two random number generators of George Marsaglia are
included.
Author: Bob Wheeler <bwheelerg@gmail.com>
Maintainer: ORPHANED
Diff between SuppDists versions 1.1-9.3 dated 2016-09-16 and 1.1-9.4 dated 2016-09-23
DESCRIPTION | 12 +++++------- MD5 | 4 ++-- src/dists.cc | 5 +++++ 3 files changed, 12 insertions(+), 9 deletions(-)
Title: Programming with Big Data --- MPI Profiling Tools
Description: MPI profiling tools.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
Gaurav Sehrawat [aut],
Pragneshkumar Patel [aut],
George Ostrouchov [aut]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdPROF versions 0.3-0 dated 2016-01-25 and 0.3-1 dated 2016-09-23
ChangeLog | 4 ++ DESCRIPTION | 6 +-- MD5 | 18 ++++----- R/00-classes.r | 3 - R/parse.r | 90 ++++++++++++++++++++++++++++----------------- R/pbdPROF-package.r | 6 ++- R/print.r | 60 ++++++++++++++++++------------ inst/CITATION | 8 ++-- inst/doc/pbdPROF-guide.pdf |binary src/Makevars.in | 2 - 10 files changed, 117 insertions(+), 80 deletions(-)
Title: Convenient Functions for Ensemble Time Series Forecasts
Description: Convenient functions for ensemble forecasts in R combining
approaches from the 'forecast' package. Forecasts generated from auto.arima(), ets(),
nnetar(), stlm(), and tbats() can be combined with equal weights or weights based on
in-sample errors. Future methods such as cross validation are planned.
Author: David Shaub [aut, cre],
Peter Ellis [ctb]
Maintainer: David Shaub <davidshaub@gmx.com>
Diff between forecastHybrid versions 0.1.7 dated 2016-06-06 and 0.2.0 dated 2016-09-23
DESCRIPTION | 8 - MD5 | 46 +++--- NAMESPACE | 1 R/cvts.R |only R/forecast.hybridModel.R | 39 +++-- R/hybridModel.R | 215 ++++++++++++++++++++++++----- build/vignette.rds |binary inst/NEWS.md | 11 + inst/doc/forecastHybrid.R | 49 +++--- inst/doc/forecastHybrid.Rmd | 55 +++---- inst/doc/forecastHybrid.html | 177 +++++++++++++---------- man/accuracy.Rd | 2 man/accuracy.cvts.Rd |only man/accuracy.default.Rd | 4 man/accuracy.hybridModel.Rd | 7 man/cvts.Rd |only man/forecast.hybridModel.Rd | 19 ++ man/hybridModel.Rd | 41 ++++- man/is.hybridModel.Rd | 2 man/plot.hybridModel.Rd | 7 man/print.hybridModel.Rd | 2 man/residuals.hybridModel.Rd | 2 tests/testthat/test-cvts.R |only tests/testthat/test-forecast.hybridModel.R | 6 tests/testthat/test-hybridModel.R | 11 + vignettes/forecastHybrid.Rmd | 55 +++---- 26 files changed, 518 insertions(+), 241 deletions(-)
More information about forecastHybrid at CRAN
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