Title: Extensions to 'ggplot2' for Radiation Spectra
Description: Additional annotations, stats and scales for plotting "light"
spectra with 'ggplot2', together with specializations of ggplot()
and plot() methods for spectral data stored in objects of the classes
defined in package 'photobiology' and a plot() method for objects of
class "waveband", also defined in package 'photobiology'.
Author: Pedro J. Aphalo [aut, cre],
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggspectra versions 0.1.8 dated 2016-08-03 and 0.1.10 dated 2016-09-24
DESCRIPTION | 14 +- MD5 | 79 +++++++------ NEWS | 18 ++- R/decoration.R | 36 ++++-- R/plot-cps-spct.r | 12 +- R/plot-filter-spct.r | 108 ++++++++++++++---- R/plot-raw-spct.r | 12 +- R/plot-response-spct.r | 51 ++++++-- R/plot-source-spct.r | 41 +++++-- R/plot-waveband.r | 10 + README.md | 4 build/vignette.rds |binary inst/CITATION |only inst/doc/plot-methods.R |only inst/doc/plot-methods.Rmd |only inst/doc/plot-methods.html |only inst/doc/user-guide.R | 126 --------------------- inst/doc/user-guide.Rmd | 218 ------------------------------------- inst/doc/user-guide.html | 259 +++++++++++---------------------------------- inst/staticdocs/README.md | 6 - inst/staticdocs/index.r | 20 +-- man/A_plot.Rd | 4 man/Afr_plot.Rd | 5 man/O_plot.Rd | 4 man/R_plot.Rd | 5 man/T_plot.Rd | 5 man/cps_plot.Rd | 4 man/decoration.Rd | 4 man/e_plot.Rd | 4 man/e_rsp_plot.Rd | 4 man/plot.cps_spct.Rd | 4 man/plot.filter_spct.Rd | 6 - man/plot.object_spct.Rd | 9 - man/plot.raw_spct.Rd | 4 man/plot.reflector_spct.Rd | 6 - man/plot.response_spct.Rd | 6 - man/plot.source_spct.Rd | 9 - man/plot.waveband.Rd | 4 man/q_plot.Rd | 4 man/q_rsp_plot.Rd | 4 man/raw_plot.Rd | 4 vignettes/plot-methods.Rmd |only vignettes/user-guide.Rmd | 218 ------------------------------------- 43 files changed, 418 insertions(+), 913 deletions(-)
Title: Convenient Data Exchange with Microsoft Excel
Description: Allows access to data in running instance of Microsoft Excel
(e. g. 'xl[a1] = xl[b2]*3' and so on). Graphics can be transferred with
'xl[a1] = current.graphics()'. There is an Excel workbook with examples of
calling R from Excel in the 'doc' folder. It tries to keep things as
simple as possible - there are no needs in any additional
installations besides R, only 'VBA' code in the Excel workbook.
Microsoft Excel is required for this package.
Author: Gregory Demin <excel.link.feedback@gmail.com>. To comply CRAN policy
includes source code from 'RDCOMClient' (http://www.omegahat.net/RDCOMClient) by
Duncan Temple Lang <duncan@wald.ucdavis.edu>.
Maintainer: Gregory Demin <excel.link.feedback@gmail.com>
Diff between excel.link versions 0.9.4 dated 2016-04-15 and 0.9.5 dated 2016-09-24
DESCRIPTION | 9 ++++--- MD5 | 46 ++++++++++++++++++++-------------------- NEWS | 6 +++++ R/0COMError.R | 4 +-- R/0classes.R | 4 +-- R/0com.R | 4 +-- R/0zzz.R | 4 +-- R/0zzzCOMLists.R | 4 +-- R/0zzzdebug.R | 4 +-- R/0zzzrunTime.R | 4 +-- R/RDCOMClient.R | 2 - R/xl.get.excel.R | 39 +++++++++++++++++++++++++++++++++ R/xl.workbooks.R | 4 +-- build/vignette.rds |binary inst/doc/CallingRFromExcel.html | 16 ++++++++----- man/RDCOMClient.Rd | 2 - src/COMError.cpp | 4 +-- src/RCOMObject.h | 12 +++------- src/RUtils.c | 4 +-- src/RUtils.h | 4 +-- src/StdAfx.h | 4 +-- src/connect.cpp | 4 +-- src/converters.cpp | 31 +++++++------------------- src/converters.h | 4 +-- 24 files changed, 125 insertions(+), 94 deletions(-)
Title: Parameterized Queries Extension for RODBC
Description: An extension for RODBC package adding support for parameterized
queries.
Author: Mateusz Zoltak [aut, cre],
Brian Ripley [aut],
Michael Lapsley [aut],
Will Beasley [ctb]
Maintainer: Mateusz Zoltak <zozlak@zozlak.org>
Diff between RODBCext versions 0.2.6 dated 2016-07-11 and 0.2.7 dated 2016-09-24
DESCRIPTION | 16 - MD5 | 35 +-- NAMESPACE | 2 NEWS | 16 + R/sqlExecute.R | 348 ++++++++++++++++---------------- README.md | 2 build/vignette.rds |binary inst/doc/Parameterized_SQL_queries.R | 8 inst/doc/Parameterized_SQL_queries.Rmd | 26 +- inst/doc/Parameterized_SQL_queries.html | 20 - man/odbcFetchRows.Rd | 2 man/sqlExecute.Rd | 24 +- man/sqlFetchMore.Rd | 2 man/sqlPrepare.Rd | 4 src/RODBC.c | 105 ++++++--- src/RODBC.h | 2 src/RODBCext.c | 131 ++++++++---- src/RODBCext.h |only vignettes/Parameterized_SQL_queries.Rmd | 26 +- 19 files changed, 430 insertions(+), 339 deletions(-)
Title: Ridge Estimation of Vector Auto-Regressive (VAR) Processes
Description: Ridge maximum likelihood estimation of vector auto-regressive processes and supporting functions for their exploitation.
Author: Wessel N. van Wieringen <w.vanwieringen@vumc.nl>
Maintainer: Wessel N. van Wieringen <w.vanwieringen@vumc.nl>
Diff between ragt2ridges versions 0.2.1 dated 2016-08-26 and 0.2.2 dated 2016-09-24
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 2 ++ R/ridgeVAR1.r | 4 ++-- inst/NEWS.Rd | 8 ++++++++ src/ragt2ridges.cpp | 2 +- 6 files changed, 23 insertions(+), 13 deletions(-)
Title: Latent Variable Analysis
Description: Fit a variety of latent variable models, including confirmatory
factor analysis, structural equation modeling and latent growth curve models.
Author: Yves Rosseel [aut, cre],
Daniel Oberski [ctb],
Jarrett Byrnes [ctb],
Leonard Vanbrabant [ctb],
Victoria Savalei [ctb],
Ed Merkle [ctb],
Michael Hallquist [ctb],
Mijke Rhemtulla [ctb],
Myrsini Katsikatsou [ctb],
Mariska Barendse [ctb]
Maintainer: Yves Rosseel <Yves.Rosseel@UGent.be>
Diff between lavaan versions 0.5-21 dated 2016-09-07 and 0.5-22 dated 2016-09-24
DESCRIPTION | 6 MD5 | 36 ++--- R/ctr_pairwise_fit.R | 5 R/lav_fit.R | 6 R/lav_fit_measures.R | 292 ++++++++++++++++++++++++++++----------------- R/lav_integrate.R | 71 +++++++--- R/lav_model_gradient.R | 1 R/lav_model_gradient_mml.R | 30 +++- R/lav_model_implied.R | 16 ++ R/lav_model_lik.R | 75 ++++++++--- R/lav_model_objective.R | 17 +- R/lav_object_inspect.R | 292 ++++++++++++++++++++++++++++++++++++++++++++- R/lav_object_methods.R | 45 ------ R/lav_objective.R | 131 ++++++++++++++++++-- R/lav_options.R | 11 + R/lav_residuals.R | 43 +++++- R/lav_samplestats_igamma.R | 2 R/lav_tables.R | 25 ++- R/xxx_lavaan.R | 93 +++++++++++++- 19 files changed, 930 insertions(+), 267 deletions(-)
Title: Simple Fisheries Stock Assessment Methods
Description: A variety of simple fish stock assessment methods.
Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between FSA versions 0.8.9 dated 2016-08-23 and 0.8.10 dated 2016-09-24
DESCRIPTION | 8 MD5 | 63 +++--- NAMESPACE | 1 NEWS.md | 18 + R/FSA-internals.R | 2 R/Summarize.R | 100 +++++++--- R/alkIndivAge.R | 8 R/bootstrap.R | 124 +++++++------ R/catchCurve.R | 65 +++---- R/chapmanRobson.R | 68 +++++-- R/depletion.R | 1 R/growthModels.R | 2 R/hist.formula.R | 4 R/mrClosed.R | 2 R/mrOpen.R | 3 R/removal.R | 60 ++---- R/vbStarts.R | 2 inst/extdata/bootCase1.RData |only inst/extdata/nlsBoot1.RData |only man/Summarize.Rd | 21 +- man/bootCase.Rd | 7 man/catchCurve.Rd | 20 +- man/chapmanRobson.Rd | 19 +- man/hist.formula.Rd | 4 man/nlsBoot.Rd | 7 man/removal.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test_CatchCurve_ChapmanRobson.R | 149 ++++++++++++++++ tests/testthat/test_Summarize.R | 229 ++++++++++++++++--------- tests/testthat/test_bootstrap.R |only tests/testthat/test_depletion.R | 8 tests/testthat/test_mrClosed.R | 8 tests/testthat/test_mrOpen.R | 8 tests/testthat/test_removal.R | 3 34 files changed, 700 insertions(+), 316 deletions(-)
Title: Evaluation of Surrogate Endpoints in Clinical Trials
Description: In a clinical trial, it frequently occurs that the most credible outcome to evaluate the effectiveness of a new therapy (the true endpoint) is difficult to measure. In such a situation, it can be an effective strategy to replace the true endpoint by a (bio)marker that is easier to measure and that allows for a prediction of the treatment effect on the true endpoint (a surrogate endpoint). The package 'Surrogate' allows for an evaluation of the appropriateness of a candidate surrogate endpoint based on the meta-analytic, information-theoretic, and causal-inference frameworks. Part of this software has been developed using funding provided from the European Union's 7-th Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Paul Meyvisch, Ariel Alonso, Hannah M. Ensor, Christopher J. Weir & Geert Molenberghs
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>
Diff between Surrogate versions 0.1-75 dated 2016-09-03 and 0.1-76 dated 2016-09-24
DESCRIPTION | 8 - MD5 | 14 +- NEWS | 3 R/CausalDiagramContCont.R | 182 +++++++++++++++--------------- man/BimixedContCont.Rd | 260 +++++++++++++++++++++---------------------- man/CausalDiagramContCont.Rd | 111 +++++++++--------- man/MixedContContIT.Rd | 256 +++++++++++++++++++++--------------------- man/UnimixedContCont.Rd | 222 ++++++++++++++++++------------------ 8 files changed, 534 insertions(+), 522 deletions(-)
Title: Simultaneous Confidence Bands for the Mean of Functional Data
Description: Statistical methods for estimating and inferring the mean of functional data. The methods include simultaneous confidence bands, local polynomial fitting, bandwidth selection by plug-in and cross-validation, goodness-of-fit tests for parametric models, equality tests for two-sample problems, and plotting functions.
Author: David Degras
Maintainer: David Degras <ddegrasv@gmail.com>
Diff between SCBmeanfd versions 1.1 dated 2014-02-01 and 1.2 dated 2016-09-24
DESCRIPTION | 14 +++---- MD5 | 33 +++++++++--------- NAMESPACE | 7 +++ NEWS |only R/cv.score.R | 29 ++++++++-------- R/cv.select.R | 9 ++--- R/plugin.select.R | 19 +++++----- R/scb.equal.R | 91 ++++++++++++++++++++++----------------------------- R/scb.mean.R | 52 ++++++++++++----------------- R/scb.model.R | 73 ++++++++++++++++------------------------ man/cv.score.Rd | 24 +++++++------ man/cv.select.Rd | 27 ++++++++------- man/phoneme.Rd | 2 - man/plot.SCBand.Rd | 43 +++++++----------------- man/plugin.select.Rd | 11 ++++-- man/scb.equal.Rd | 65 ++++++++++++++++-------------------- man/scb.mean.Rd | 61 ++++++++++++++-------------------- man/scb.model.Rd | 66 ++++++++++++++++-------------------- 18 files changed, 287 insertions(+), 339 deletions(-)
Title: Simple Colour Manipulation
Description: Functions for easily manipulating colours, creating colour scales and calculating colour distances.
Author: Jon Clayden
Maintainer: Jon Clayden <code@clayden.org>
Diff between shades versions 0.1.0 dated 2016-01-06 and 0.2.0 dated 2016-09-24
DESCRIPTION | 14 + MD5 | 35 +++- NAMESPACE | 23 ++- NEWS |only R/distance.R |only R/mixtures.R |only R/properties.R | 20 +- R/scales.R | 9 - R/shade.R | 257 +++++++++++++++++++++++++++++++----- R/swatch.R | 2 README.md | 77 ++++++++-- man/complement.Rd |only man/coords.Rd |only man/distance.Rd |only man/mixtures.Rd |only man/properties.Rd | 2 man/shade.Rd | 72 +++++++++- man/space.Rd |only man/warp.Rd |only tests/testthat/test-05-shade.R | 15 +- tests/testthat/test-10-scales.R | 4 tests/testthat/test-15-properties.R | 8 - tests/testthat/test-20-mixtures.R |only tests/testthat/test-25-distance.R |only 24 files changed, 438 insertions(+), 100 deletions(-)
Title: Generalized Estimating Equation Package
Description: Generalized estimating equations solver for parameters in
mean, scale, and correlation structures, through mean link,
scale link, and correlation link. Can also handle clustered
categorical responses.
Author: Søren Højsgaard <sorenh@math.aau.dk>, Ulrich Halekoh <uhalekoh@health.sdu.dk>, Jun Yan <jun.yan@uconn.edu>,
Maintainer: Søren Højsgaard <sorenh@math.aau.dk>
Diff between geepack versions 1.2-0.2 dated 2016-07-05 and 1.2-1 dated 2016-09-24
ChangeLog | 441 ++++++++++++++++++++++++++--------------------------- DESCRIPTION | 8 MD5 | 12 - R/geeglm-anova.R | 19 +- R/geeglm.R | 2 build/vignette.rds |binary inst/CITATION | 88 +++++----- 7 files changed, 291 insertions(+), 279 deletions(-)
Title: Reproducible Retrieval of Pew Research Center Datasets
Description: Reproducible, programmatic retrieval of survey datasets from the
Pew Research Center.
Author: Frederick Solt [aut, cre],
Yue Hu [aut],
Eric Persson [ctb]
Maintainer: Frederick Solt <frederick-solt@uiowa.edu>
Diff between pewdata versions 0.1.1 dated 2016-07-15 and 0.2.0 dated 2016-09-24
pewdata-0.1.1/pewdata/vignettes/global-restrictions.png |only pewdata-0.2.0/pewdata/DESCRIPTION | 12 pewdata-0.2.0/pewdata/LICENSE | 2 pewdata-0.2.0/pewdata/MD5 | 26 - pewdata-0.2.0/pewdata/NAMESPACE | 12 pewdata-0.2.0/pewdata/NEWS.md | 21 - pewdata-0.2.0/pewdata/R/pew_download.R | 272 +++++++------ pewdata-0.2.0/pewdata/README.md | 38 - pewdata-0.2.0/pewdata/build/vignette.rds |binary pewdata-0.2.0/pewdata/inst/doc/pewdata-vignette.R | 30 - pewdata-0.2.0/pewdata/inst/doc/pewdata-vignette.Rmd | 153 +++---- pewdata-0.2.0/pewdata/inst/doc/pewdata-vignette.html | 315 ++++++++-------- pewdata-0.2.0/pewdata/man/pew_download.Rd | 151 +++---- pewdata-0.2.0/pewdata/vignettes/pewdata-vignette.Rmd | 153 +++---- pewdata-0.2.0/pewdata/vignettes/religion-in-lat-am.png |only 15 files changed, 615 insertions(+), 570 deletions(-)
Title: PANIC Tests of Nonstationarity
Description: A methodology that makes use of the factor structure of large
dimensional panels to understand the nature of nonstationarity inherent
in data. This is referred to as PANIC, Panel Analysis of Nonstationarity
in Idiosyncratic and Common Components.
PANIC (2004)<doi:10.1111/j.1468-0262.2004.00528.x> includes
valid pooling methods that allow panel tests to be constructed.
PANIC (2004) can detect whether the nonstationarity in a series is
pervasive, or variable specific, or both.
PANIC (2010) <doi:10.1017/s0266466609990478> includes
two new tests on the idiosyncratic component that estimates the pooled
autoregressive coefficient and sample moment, respectively. The PANIC
model approximates the number of factors based on
Bai and Ng (2002) <doi:10.1111/1468-0262.00273>.
Author: Steve Bronder <sbronder@stevebronder.com>
Maintainer: Steve Bronder <sbronder@stevebronder.com>
Diff between PANICr versions 0.1.3 dated 2016-08-28 and 1.0.0 dated 2016-09-24
DESCRIPTION | 6 MD5 | 16 - R/MCMCfacstuffzzz.R | 2 R/MCMCpanic10.R | 7 R/cPANIC.r | 2 R/panic10b.r | 536 ++++++++++++++++++++--------------------- build/vignette.rds |binary inst/doc/PANICr.html | 4 tests/testthat/test_panic_io.R | 6 9 files changed, 291 insertions(+), 288 deletions(-)
Title: Data Published by the United States Federal Energy Regulatory
Commission
Description: Data published by the United States Federal Energy Regulatory Commission including
electric company financial data, natural gas company financial data,
hydropower plant data, liquified natural gas plant data, oil company financial data
natural gas company financial data, and natural gas storage field data.
Author: Paul Govan [aut, cre]
Maintainer: Paul Govan <pgovan1@aggienetwork.com>
Diff between energyr versions 0.1.0 dated 2016-07-24 and 0.1.1 dated 2016-09-24
DESCRIPTION | 6 +++--- MD5 | 25 +++++++++++++------------ NAMESPACE | 1 + NEWS.md |only R/hydropower.R | 7 ++++--- R/lng.R | 11 ++++++----- R/pipeline.R | 14 ++++++-------- R/storage.R | 23 ++++++++++++++--------- README.md | 6 ++++++ data/storage.rda |binary man/hydropower.Rd | 6 +++--- man/lng.Rd | 10 +++++----- man/pipeline.Rd | 14 ++++++-------- man/storage.Rd | 19 ++++++++++++------- 14 files changed, 79 insertions(+), 63 deletions(-)