Title: Client for the YouTube API
Description: Get comments posted on YouTube videos, information on how many
times a video has been liked, search for videos with particular content, and
much more. You can also scrape captions from a few videos. To learn more about
the YouTube API, see <https://developers.google.com/youtube/v3/>.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between tuber versions 0.6.0 dated 2016-11-10 and 0.7.0 dated 2016-11-21
DESCRIPTION | 8 - MD5 | 109 +++++++++++++------------- NAMESPACE | 2 NEWS.md | 18 ++++ R/get_captions.R | 4 R/get_channel_stats.R | 9 +- R/get_comment_threads.R | 17 ++-- R/get_comments.R | 22 ++--- R/get_playlist_items.R | 2 R/get_playlists.R | 34 ++++++-- R/get_related_videos.R | 29 ++++-- R/get_stats.R | 6 - R/get_subscriptions.R | 2 R/get_video_details.R | 6 - R/list_abuse_report_reasons.R | 23 ++--- R/list_caption_tracks.R | 10 +- R/list_channel_activities.R | 37 +++++++- R/list_channel_resources.R | 4 R/list_channel_videos.R | 6 - R/list_guidecats.R | 38 +++++---- R/list_langs.R | 14 +-- R/list_regions.R | 24 +++-- R/list_videocats.R | 34 +++++--- R/list_videos.R | 12 +- R/tuber.R | 24 ++++- R/yt_oauth.R | 3 R/yt_search.R | 54 +++++++----- R/yt_topic_search.R | 4 README.md | 12 -- inst/doc/tuber-ex.R | 12 +- inst/doc/tuber-ex.Rmd | 38 +++++++-- inst/doc/tuber-ex.html | 39 ++++++--- man/get_captions.Rd | 2 man/get_channel_stats.Rd | 7 - man/get_comment_threads.Rd | 10 +- man/get_comments.Rd | 24 +++-- man/get_playlists.Rd | 12 ++ man/get_related_videos.Rd | 6 - man/get_stats.Rd | 2 man/get_video_details.Rd | 4 man/list_abuse_report_reasons.Rd | 8 - man/list_caption_tracks.Rd | 6 - man/list_channel_activities.Rd | 12 ++ man/list_channel_videos.Rd | 2 man/list_guidecats.Rd | 8 - man/list_langs.Rd | 2 man/list_regions.Rd | 3 man/list_videocats.Rd | 3 man/list_videos.Rd | 13 +-- man/tuber_check.Rd |only man/yt_search.Rd | 17 +++- tests/testthat/test-list-channel-activities.R | 2 tests/testthat/token_file.rds |binary tests/testthat/token_file.rds.enc |binary vignettes/tuber-ex.Rmd | 38 +++++++-- vignettes/tuber-ex.md | 40 +++++++-- 56 files changed, 553 insertions(+), 324 deletions(-)
Title: Deployment Interface for R Markdown Documents and Shiny
Applications
Description: Programmatic deployment interface for 'RPubs', 'shinyapps.io', and
'RStudio Connect'. Supported content types include R Markdown documents,
Shiny applications, plots, and static web content.
Author: JJ Allaire
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between rsconnect versions 0.5 dated 2016-10-16 and 0.6 dated 2016-11-21
DESCRIPTION | 8 +++--- MD5 | 24 +++++++++--------- R/bundle.R | 51 +++++++++++++++++++++++++++++++++++++- R/configureApp.R | 10 +++---- R/deployApp.R | 69 ++++++++++++++++++++++++++++++++++++++++++++++++---- R/deploySite.R | 6 ++-- R/http.R | 2 - R/lint-framework.R | 8 +++--- R/utils.R | 16 ++++++++++++ man/configureApp.Rd | 9 ++++-- man/deployApp.Rd | 9 ++++-- man/deploySite.Rd | 9 ++++-- man/options.Rd | 1 13 files changed, 179 insertions(+), 43 deletions(-)
More information about relabeLoadings at CRAN
Permanent link
Title: Landscape Meteorology Tools
Description: Functions to estimate weather variables at any position of a landscape.
Author: Miquel De Caceres, Nicolas Martin, Antoine Cabon
Maintainer: Miquel De Caceres <miquelcaceres@gmail.com>
Diff between meteoland versions 0.4.3 dated 2016-10-03 and 0.4.9 dated 2016-11-21
DESCRIPTION | 8 MD5 | 44 +- R/RcppExports.R | 190 ++++----- R/downscalinggrid.R | 348 ++++++++-------- R/downscalingpoints.R | 473 +++++++++++----------- R/extractNetCDF.R | 378 +++++++++--------- R/interpolationpoints.R | 367 ++++++++--------- R/meteoplot.R | 61 ++ R/readmeteorologypoints.R | 84 ++-- R/summarypoints.R |only build/vignette.rds |binary data/datalist | 6 data/exampledownscalingdata.rda |binary data/examplegridtopography.rda |binary data/exampleinterpolationdata.rda |binary inst/doc/Meteorology.R | 118 ++--- inst/doc/Meteorology.Rnw | 798 +++++++++++++++++++------------------- man/extractNetCDF.Rd | 98 ++-- man/meteoplot.Rd | 89 +++- man/readmeteorologypoint.Rd | 67 +-- man/summarypoints.Rd |only src/RcppExports.cpp | 186 ++++---- src/meteo.cpp | 3 vignettes/Meteorology.Rnw | 798 +++++++++++++++++++------------------- 24 files changed, 2113 insertions(+), 2003 deletions(-)
Title: An R Interface to the ROPTLIB Library for Riemannian Manifold
Optimization
Description: An R interface to the 'ROPTLIB' optimization library (see <http://www.math.fsu.edu/~whuang2> for more information). Optimize real-valued functions over manifolds such as Stiefel, Grassmann, and Symmetric Positive Definite matrices.
Author: Kofi P. Adragni [aut, cre, cph],
Sean R. Martin [aut, cph],
Andrew M. Raim [aut, cph],
Wen Huang [aut, cph]
Maintainer: Kofi P. Adragni <kofi@umbc.edu>
Diff between ManifoldOptim versions 0.1.0 dated 2016-11-04 and 0.1.1 dated 2016-11-21
DESCRIPTION | 8 MD5 | 126 +++++----- inst/examples/brockett/cpp_pkg/driver.R | 2 inst/examples/brockett/cpp_sourceCpp/driver-minimal.Rin | 2 inst/examples/brockett/cpp_sourceCpp/driver.R | 2 inst/examples/brockett/cpp_standalone/driver.R | 2 inst/examples/brockett/rproblem/driver-minimal.Rin | 2 inst/examples/brockett/rproblem/driver-withhessian.R | 2 inst/examples/brockett/rproblem/driver.R | 2 inst/examples/envelope/ais_example.R | 2 inst/examples/envelope/glm_comparison.R | 4 inst/examples/envelope/glm_example.R | 2 inst/examples/envelope/normal_means.R | 2 inst/examples/envelope/wheat_data.R | 2 inst/examples/grassmann_rproblem.R | 2 inst/examples/pfc_groupwise/pfc_delta.R | 2 inst/examples/pfc_groupwise/pfc_delta_gamma.R | 2 inst/examples/pfc_groupwise/pfc_unstruc_delta_gamma.R | 2 inst/examples/product_rproblem.R | 2 inst/examples/spd_rproblem.R | 2 inst/examples/sphere_rproblem.R | 2 src/Makevars | 18 - src/ManifoldOptim/ManifoldOptim.cpp | 8 src/Manifolds/CpxNStQOrth/CpxNStQOrth.cpp | 20 - src/Manifolds/Element.cpp | 2 src/Manifolds/Euclidean/Euclidean.cpp | 14 - src/Manifolds/Grassmann/GrassVariable.cpp | 4 src/Manifolds/Grassmann/Grassmann.cpp | 20 - src/Manifolds/L2Sphere/L2Sphere.cpp | 18 - src/Manifolds/Manifold.cpp | 86 +++--- src/Manifolds/Oblique/ObliqueVariable.cpp | 14 - src/Manifolds/Oblique/ObliqueVector.cpp | 14 - src/Manifolds/PreShapeCurves/PSCVariable.cpp | 2 src/Manifolds/PreShapeCurves/PreShapeCurves.cpp | 26 +- src/Manifolds/ProductElement.cpp | 2 src/Manifolds/ProductManifold.cpp | 2 src/Manifolds/SPDManifold.cpp | 18 - src/Manifolds/SPDTensor/SPDTensor.cpp | 2 src/Manifolds/SmartSpace.cpp | 34 +- src/Manifolds/Stiefel/StieVariable.cpp | 4 src/Manifolds/Stiefel/Stiefel.cpp | 68 ++--- src/Others/ForDebug.cpp | 14 - src/Others/MyMatrix.cpp | 44 +-- src/Others/MyMatrix.h | 30 +- src/Others/Spline.cpp | 8 src/Others/def.h | 46 +++ src/Others/randgen.h | 2 src/Problems/ElasticCurvesRO/DriverElasticCurvesRO.cpp | 22 - src/Problems/PreShapePathStraighten/PreShapePathStraighten.cpp | 90 +++---- src/Problems/Problem.cpp | 40 +-- src/Problems/SPDMean/SPDMean.cpp | 6 src/Problems/SPDTensorDL/SPDTensorDL.cpp | 6 src/Problems/StieBrockett/StieBrockett.cpp | 2 src/Solvers/LRBFGS.cpp | 10 src/Solvers/LRTRSR1.cpp | 6 src/Solvers/RBFGS.cpp | 8 src/Solvers/RBroydenFamily.cpp | 8 src/Solvers/RCG.cpp | 6 src/Solvers/RNewton.cpp | 12 src/Solvers/RTRSR1.cpp | 4 src/Solvers/RWRBFGS.cpp | 8 src/Solvers/Solvers.cpp | 22 - src/Solvers/SolversLS.cpp | 60 ++-- src/Solvers/SolversTR.cpp | 30 +- 64 files changed, 524 insertions(+), 510 deletions(-)
Title: Estimation, Simulation and Visualization of Hierarchical
Archimedean Copulae (HAC)
Description: Package provides the estimation of the structure and the parameters, sampling methods and structural plots of Hierarchical Archimedean Copulae (HAC).
Author: Ostap Okhrin <ostap.okhrin@tu-dresden.de> and Alexander Ristig <alexander.ristig@univie.ac.at>
Maintainer: Alexander Ristig <alexander.ristig@univie.ac.at>
Diff between HAC versions 1.0-4 dated 2015-10-11 and 1.0-5 dated 2016-11-21
DESCRIPTION | 12 ++--- MD5 | 26 +++++----- R/constructor.r | 4 - build/vignette.rds |binary inst/ChangeLog | 62 +++++++++++++------------- inst/doc/HAC.Rnw | 116 +++++++++++++++++++++++++++++++++++++++++-------- inst/doc/HAC.pdf |binary man/dHAC.Rd | 2 man/emp.copula.Rd | 2 man/estimate.copula.Rd | 2 man/hac.Rd | 10 ++-- man/plot.hac.Rd | 2 vignettes/HAC.Rnw | 116 +++++++++++++++++++++++++++++++++++++++++-------- vignettes/ref.bib | 10 ++++ 14 files changed, 269 insertions(+), 95 deletions(-)
Title: Modeling Animal Movement with Continuous-Time Discrete-Space
Markov Chains
Description: Software to facilitates taking movement data in xyt format and pairing it with raster covariates within a continuous time Markov chain (CTMC) framework. As described in Hanks et al. (2015) <DOI:10.1214/14-AOAS803> , this allows flexible modeling of movement in response to covariates (or covariate gradients) with model fitting possible within a Poisson GLM framework.
Author: Ephraim Hanks
Maintainer: Ephraim Hanks <hanks@psu.edu>
Diff between ctmcmove versions 1.2.6 dated 2016-07-21 and 1.2.7 dated 2016-11-21
DESCRIPTION | 10 +-- MD5 | 8 +- NAMESPACE | 2 R/path2ctmc.R | 176 +++++++++---------------------------------------------- man/path2ctmc.Rd | 18 +++++ 5 files changed, 56 insertions(+), 158 deletions(-)
Title: Bayesian Projection of Life Expectancy
Description: Making probabilistic projections of life expectancy for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova, Adrian Raftery, Jennifer Chunn
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesLife versions 3.0-0 dated 2015-12-05 and 3.0-1 dated 2016-11-21
ChangeLog | 10 ++++++++ DESCRIPTION | 14 +++++------ MD5 | 27 +++++++++++---------- NAMESPACE | 6 +++- R/diagnostics.R | 2 - R/get_outputs.R | 2 - R/plot_functions.R | 56 ++++++++++++++++++++++++++++++++++++--------- R/projection_fcns.R | 4 +-- R/wpp_data.R | 2 - inst/ex-data/last.dump.rda |only man/bayesLife-internal.Rd | 2 - man/bayesLife-package.Rd | 8 +++--- man/e0.DLcurve.plot.Rd | 21 ++++++++++++++++ tests/run_tests.R | 30 +++++++++++++----------- tests/test_functions.R | 36 ++++++++++++++++++++++++++++ 15 files changed, 163 insertions(+), 57 deletions(-)
Title: Dataframe Summaries, Frequency Tables and Descriptive Stats with
Flexible Output Formats
Description: Built around three key functions: 1) freq() generates
frequency tables reporting counts and proportions (including cumulative) for factors
and other discrete data; 2) descr() gives all common central tendency statistics and
measures of dispersion for numerical data; 3) dfSummary() gives as much information
as possible on a dataframe's columns in a legible table. freq() and
descr() support weights, and all three functions support 'Hmisc' or 'pander' labels.
A variety of output formats are available (plain text, 'rmarkdown' and HTML).
An additional misc function, what.is(), displays all common properties of an object
(its class, type, mode, attributes, etc.) and extends the base is() function,
checking the object against most is.() functions.
Author: Dominic Comtois
Maintainer: Dominic Comtois <dominic.comtois@gmail.com>
Diff between summarytools versions 0.4 dated 2015-08-05 and 0.6 dated 2016-11-21
summarytools-0.4/summarytools/data/fumeurs.txt |only summarytools-0.4/summarytools/data/smokers.txt |only summarytools-0.4/summarytools/inst/includes/stylesheets/bootstrap-theme.css |only summarytools-0.4/summarytools/inst/includes/stylesheets/bootstrap-theme.min.css |only summarytools-0.4/summarytools/man/fumeurs.Rd |only summarytools-0.4/summarytools/man/smokers.Rd |only summarytools-0.6/summarytools/DESCRIPTION | 39 summarytools-0.6/summarytools/MD5 | 64 summarytools-0.6/summarytools/NAMESPACE | 44 summarytools-0.6/summarytools/NEWS | 80 summarytools-0.6/summarytools/R/descr.R | 354 summarytools-0.6/summarytools/R/dfSummary.R | 370 summarytools-0.6/summarytools/R/freq.R | 223 summarytools-0.6/summarytools/R/misc.R | 368 summarytools-0.6/summarytools/R/print.summarytools.R | 433 summarytools-0.6/summarytools/R/test_weights.R |only summarytools-0.6/summarytools/R/what.is.R | 193 summarytools-0.6/summarytools/build |only summarytools-0.6/summarytools/data/examens.txt | 57 summarytools-0.6/summarytools/data/exams.txt | 57 summarytools-0.6/summarytools/data/tabagisme.txt |only summarytools-0.6/summarytools/data/tobacco.txt |only summarytools-0.6/summarytools/inst/doc |only summarytools-0.6/summarytools/inst/includes/stylesheets/bootstrap.css | 7165 ---------- summarytools-0.6/summarytools/inst/includes/stylesheets/bootstrap.min.css | 31 summarytools-0.6/summarytools/inst/includes/stylesheets/custom.css | 40 summarytools-0.6/summarytools/man/cleartmp.Rd |only summarytools-0.6/summarytools/man/descr.Rd | 71 summarytools-0.6/summarytools/man/dfSummary.Rd | 82 summarytools-0.6/summarytools/man/examens.Rd | 49 summarytools-0.6/summarytools/man/exams.Rd | 49 summarytools-0.6/summarytools/man/freq.Rd | 67 summarytools-0.6/summarytools/man/parse_arg.Rd |only summarytools-0.6/summarytools/man/print.summarytools.Rd | 62 summarytools-0.6/summarytools/man/tabagisme.Rd |only summarytools-0.6/summarytools/man/tobacco.Rd |only summarytools-0.6/summarytools/man/view.Rd | 59 summarytools-0.6/summarytools/man/what.is.Rd | 69 summarytools-0.6/summarytools/vignettes |only 39 files changed, 2095 insertions(+), 7931 deletions(-)
Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut, cre],
Joe Cheng [aut],
Yihui Xie [aut],
Jonathan McPherson [aut],
Winston Chang [aut],
Jeff Allen [aut],
Hadley Wickham [aut],
Aron Atkins [aut],
Rob Hyndman [aut],
RStudio, Inc. [cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/rmd/h/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/rmd/h/jqueryui-AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
Greg Franko [ctb, cph] (tocify library),
Eli Grey [ctb, cph] (FileSaver library),
John MacFarlane [ctb, cph] (Pandoc templates),
Google, Inc. [ctb, cph] (ioslides library),
Dave Raggett [ctb] (slidy library),
W3C [cph] (slidy library),
Dave Gandy [ctb, cph] (Font-Awesome),
Ben Sperry [ctb] (Ionicons),
Drifty [cph] (Ionicons)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between rmarkdown versions 1.1 dated 2016-10-16 and 1.2 dated 2016-11-21
rmarkdown-1.1/rmarkdown/inst/rmd/h/highlight |only rmarkdown-1.1/rmarkdown/inst/rmd/h/pagedtable-0.0.1 |only rmarkdown-1.2/rmarkdown/DESCRIPTION | 12 rmarkdown-1.2/rmarkdown/MD5 | 95 ++--- rmarkdown-1.2/rmarkdown/NAMESPACE | 13 rmarkdown-1.2/rmarkdown/R/html_dependencies.R | 63 ++- rmarkdown-1.2/rmarkdown/R/html_document.R | 79 ++-- rmarkdown-1.2/rmarkdown/R/html_document_base.R | 2 rmarkdown-1.2/rmarkdown/R/html_notebook.R | 1 rmarkdown-1.2/rmarkdown/R/html_paged.R | 146 +++++++- rmarkdown-1.2/rmarkdown/R/ioslides_presentation.R | 43 +- rmarkdown-1.2/rmarkdown/R/knit_print.R | 11 rmarkdown-1.2/rmarkdown/R/output_format.R | 15 rmarkdown-1.2/rmarkdown/R/pandoc.R | 86 +--- rmarkdown-1.2/rmarkdown/R/params.R | 21 - rmarkdown-1.2/rmarkdown/R/render.R | 133 ++++++- rmarkdown-1.2/rmarkdown/R/shiny.R | 175 +++++++--- rmarkdown-1.2/rmarkdown/R/shiny_module.R |only rmarkdown-1.2/rmarkdown/R/shiny_prerendered.R |only rmarkdown-1.2/rmarkdown/R/slidy_presentation.R | 38 +- rmarkdown-1.2/rmarkdown/R/util.R | 41 +- rmarkdown-1.2/rmarkdown/inst/NEWS | 41 ++ rmarkdown-1.2/rmarkdown/inst/rmd/h/default.html | 31 - rmarkdown-1.2/rmarkdown/inst/rmd/h/highlightjs-1.1 |only rmarkdown-1.2/rmarkdown/inst/rmd/h/navigation-1.1/tabsets.js | 19 - rmarkdown-1.2/rmarkdown/inst/rmd/h/pagedtable-1.1 |only rmarkdown-1.2/rmarkdown/inst/rmd/h/rsiframe-1.1 |only rmarkdown-1.2/rmarkdown/inst/rmd/ioslides/default.html | 19 - rmarkdown-1.2/rmarkdown/inst/rmd/ioslides/ioslides-13.5.1/js/slide-deck.js | 27 + rmarkdown-1.2/rmarkdown/inst/rmd/ioslides/ioslides-13.5.1/theme/css/phone.css | 5 rmarkdown-1.2/rmarkdown/inst/rmd/ioslides/ioslides_presentation.lua | 10 rmarkdown-1.2/rmarkdown/inst/rmd/slidy/default.html | 15 rmarkdown-1.2/rmarkdown/man/beamer_presentation.Rd | 6 rmarkdown-1.2/rmarkdown/man/github_document.Rd | 6 rmarkdown-1.2/rmarkdown/man/html_document.Rd | 6 rmarkdown-1.2/rmarkdown/man/html_fragment.Rd | 6 rmarkdown-1.2/rmarkdown/man/html_vignette.Rd | 6 rmarkdown-1.2/rmarkdown/man/ioslides_presentation.Rd | 7 rmarkdown-1.2/rmarkdown/man/md_document.Rd | 6 rmarkdown-1.2/rmarkdown/man/navbar_html.Rd | 5 rmarkdown-1.2/rmarkdown/man/output_format.Rd | 6 rmarkdown-1.2/rmarkdown/man/paged_table.Rd |only rmarkdown-1.2/rmarkdown/man/pandoc_path_arg.Rd | 5 rmarkdown-1.2/rmarkdown/man/pdf_document.Rd | 6 rmarkdown-1.2/rmarkdown/man/render.Rd | 7 rmarkdown-1.2/rmarkdown/man/shiny_prerendered_chunk.Rd |only rmarkdown-1.2/rmarkdown/man/shiny_prerendered_clean.Rd |only rmarkdown-1.2/rmarkdown/man/shiny_prerendered_server_start_code.Rd |only rmarkdown-1.2/rmarkdown/man/slidy_presentation.Rd | 12 rmarkdown-1.2/rmarkdown/man/word_document.Rd | 6 rmarkdown-1.2/rmarkdown/tests/testthat/test-notebook.R | 14 51 files changed, 814 insertions(+), 431 deletions(-)
Title: Loading Google Adwords Data into R
Description: Aims at loading Google Adwords data into R. Adwords is an online
advertising service that enables advertisers to display advertising copy to web
users. Therefore the package implements three main features. First, the package
provides an authentication process for R with the Google Adwords API via OAUTH2.
Second, the package offers an interface to apply the Adwords query language in
R and query the Adwords API with ad-hoc reports. Third, the received data are
transformed into suitable data formats for further data processing and data
analysis.
Author: Johannes Burkhardt <johannes.burkhardt@gmail.com>, Matthias Bannert
<matthias.bannert@gmail.com>
Maintainer: Johannes Burkhardt <johannes.burkhardt@gmail.com>
Diff between RAdwords versions 0.1.10 dated 2016-07-06 and 0.1.11 dated 2016-11-21
RAdwords-0.1.10/RAdwords/inst/extdata/api201509 |only RAdwords-0.1.10/RAdwords/inst/extdata/api201601 |only RAdwords-0.1.10/RAdwords/inst/extdata/api201603 |only RAdwords-0.1.11/RAdwords/DESCRIPTION | 6 RAdwords-0.1.11/RAdwords/MD5 | 244 +++++++++--------------- RAdwords-0.1.11/RAdwords/NEWS | 12 + RAdwords-0.1.11/RAdwords/R/getData.R | 4 RAdwords-0.1.11/RAdwords/R/metrics.R | 11 - RAdwords-0.1.11/RAdwords/R/reports.R | 11 - RAdwords-0.1.11/RAdwords/R/statement.R | 24 +- RAdwords-0.1.11/RAdwords/R/transformData.R | 11 - RAdwords-0.1.11/RAdwords/inst/extdata/api201607 |only RAdwords-0.1.11/RAdwords/inst/extdata/api201609 |only RAdwords-0.1.11/RAdwords/man/getData.Rd | 4 RAdwords-0.1.11/RAdwords/man/metrics.Rd | 4 RAdwords-0.1.11/RAdwords/man/reports.Rd | 4 RAdwords-0.1.11/RAdwords/man/statement.Rd | 18 - RAdwords-0.1.11/RAdwords/man/transformData.Rd | 2 18 files changed, 161 insertions(+), 194 deletions(-)
Title: Fit Projected 2D Profiles to Galaxy Images
Description: Get data / Define model / ??? / ProFit! ProFit is a Bayesian galaxy fitting tool that uses a fast C++ image generation library and a flexible interface to a large number of likelihood samplers.
Author: Aaron Robotham, Dan Taranu, Rodrigo Tobar
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between ProFit versions 1.0 dated 2016-09-29 and 1.0.2 dated 2016-11-21
ProFit-1.0.2/ProFit/DESCRIPTION | 8 ProFit-1.0.2/ProFit/MD5 | 55 ++--- ProFit-1.0.2/ProFit/NEWS |only ProFit-1.0.2/ProFit/R/profitLikeModel.R | 132 +++++++----- ProFit-1.0.2/ProFit/R/profitMakePlots.R | 24 +- ProFit-1.0.2/ProFit/R/profitRemakeModellist.R |only ProFit-1.0.2/ProFit/R/profitSetupData.R | 9 ProFit-1.0.2/ProFit/build/partial.rdb |binary ProFit-1.0.2/ProFit/inst/doc/ProFit-Galaxy-Fit-Example.R | 26 +- ProFit-1.0.2/ProFit/inst/doc/ProFit-Galaxy-Fit-Example.Rmd | 18 - ProFit-1.0.2/ProFit/inst/doc/ProFit-Galaxy-Fit-Example.html | 23 -- ProFit-1.0.2/ProFit/inst/doc/ProFit-Make-Model-Image.R | 26 +- ProFit-1.0.2/ProFit/inst/doc/ProFit-Make-Model-Image.Rmd | 18 + ProFit-1.0.2/ProFit/inst/doc/ProFit-Make-Model-Image.html | 23 -- ProFit-1.0.2/ProFit/inst/doc/ProFit-PSF-Fit-Example.R | 44 ++-- ProFit-1.0.2/ProFit/inst/doc/ProFit-PSF-Fit-Example.Rmd | 23 +- ProFit-1.0.2/ProFit/inst/doc/ProFit-PSF-Fit-Example.html | 34 --- ProFit-1.0.2/ProFit/man/ProFit-package.Rd | 6 ProFit-1.0.2/ProFit/man/profitEllipse.Rd | 2 ProFit-1.0.2/ProFit/man/profitEllipsePlot.Rd | 6 ProFit-1.0.2/ProFit/man/profitMakeModel.Rd | 2 ProFit-1.0.2/ProFit/man/profitMakePlots.Rd | 20 - ProFit-1.0.2/ProFit/man/profitRemakeModellist.Rd |only ProFit-1.0.2/ProFit/man/profitSetupData.Rd | 33 +-- ProFit-1.0.2/ProFit/src/Makevars | 1 ProFit-1.0.2/ProFit/src/gauss.cpp | 11 - ProFit-1.0.2/ProFit/vignettes/ProFit-Galaxy-Fit-Example.Rmd | 18 - ProFit-1.0.2/ProFit/vignettes/ProFit-Make-Model-Image.Rmd | 18 + ProFit-1.0.2/ProFit/vignettes/ProFit-PSF-Fit-Example.Rmd | 23 +- ProFit-1.0/ProFit/R/profitRemakeModelList.R |only ProFit-1.0/ProFit/man/profitRemakeModelList.Rd |only 31 files changed, 316 insertions(+), 287 deletions(-)
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut],
Carolin Strobl [aut],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.0-25 dated 2015-11-05 and 1.1-0 dated 2016-11-21
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Title: Models for Health Economic Evaluation
Description: Health Economic Evaluation Modelling.
Markov models (decision trees, homogeneous and non-homogeneous)
for health economic evaluation. Model comparison,
sensitivity and probabilistic analysis.
Author: Antoine Filipovic-Pierucci [aut, cre],
Kevin Zarca [aut],
Matthew Wiener [ctb],
Zdenek Kabat [ctb],
Vojtech Filipec [ctb]
Maintainer: Antoine Filipovic-Pierucci <pierucci@gmail.com>
Diff between heemod versions 0.6.0 dated 2016-11-11 and 0.7.0 dated 2016-11-21
heemod-0.6.0/heemod/R/model_define.R |only heemod-0.6.0/heemod/R/model_eval.R |only heemod-0.6.0/heemod/R/model_print.R |only heemod-0.6.0/heemod/inst/examples/example_eval_model.R |only heemod-0.6.0/heemod/inst/examples/example_eval_model_newdata.R |only heemod-0.6.0/heemod/inst/tabular/thr/output/dsa_new.pdf |only heemod-0.6.0/heemod/inst/tabular/thr/output/dsa_new.png |only heemod-0.6.0/heemod/inst/tabular/thr/output/dsa_new_vs_standard.pdf |only heemod-0.6.0/heemod/inst/tabular/thr/output/dsa_new_vs_standard.png |only heemod-0.6.0/heemod/inst/tabular/thr/output/dsa_standard.pdf |only heemod-0.6.0/heemod/inst/tabular/thr/output/dsa_standard.png |only heemod-0.6.0/heemod/inst/tabular/thr/output/psa_new_vs_standard.pdf |only heemod-0.6.0/heemod/inst/tabular/thr/output/psa_new_vs_standard.png |only heemod-0.6.0/heemod/inst/tabular/thr/output/state_count_plot_new.pdf |only heemod-0.6.0/heemod/inst/tabular/thr/output/state_count_plot_new.png |only heemod-0.6.0/heemod/inst/tabular/thr/output/state_count_plot_standard.pdf |only heemod-0.6.0/heemod/inst/tabular/thr/output/state_count_plot_standard.png |only heemod-0.6.0/heemod/man/check_model_index.Rd |only heemod-0.6.0/heemod/man/eval_model.Rd |only heemod-0.6.0/heemod/man/eval_model_newdata.Rd |only heemod-0.6.0/heemod/man/get_init.Rd |only heemod-0.6.0/heemod/man/normalize_ce.Rd |only heemod-0.6.0/heemod/man/plot.eval_sensitivity.Rd |only heemod-0.7.0/heemod/DESCRIPTION | 14 heemod-0.7.0/heemod/MD5 | 225 +- heemod-0.7.0/heemod/NAMESPACE | 40 heemod-0.7.0/heemod/NEWS.md | 93 heemod-0.7.0/heemod/R/acceptability_curve.R | 21 heemod-0.7.0/heemod/R/combine.R | 149 + heemod-0.7.0/heemod/R/covariance.R |only heemod-0.7.0/heemod/R/deprecated.R | 2 heemod-0.7.0/heemod/R/efficiency_frontier.R | 14 heemod-0.7.0/heemod/R/expand.R | 8 heemod-0.7.0/heemod/R/get_code.R | 20 heemod-0.7.0/heemod/R/heemod.R | 4 heemod-0.7.0/heemod/R/newdata.R | 31 heemod-0.7.0/heemod/R/resamp_define.R | 6 heemod-0.7.0/heemod/R/resamp_eval.R | 73 heemod-0.7.0/heemod/R/resamp_print.R | 172 - 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heemod-0.7.0/heemod/inst/doc/g-heterogeneity.R | 19 heemod-0.7.0/heemod/inst/doc/g-heterogeneity.Rmd | 22 heemod-0.7.0/heemod/inst/doc/g-heterogeneity.html | 185 - heemod-0.7.0/heemod/inst/doc/h-tabular.R | 5 heemod-0.7.0/heemod/inst/doc/h-tabular.Rmd | 5 heemod-0.7.0/heemod/inst/doc/h-tabular.html | 69 heemod-0.7.0/heemod/inst/doc/i-reproduction.R | 8 heemod-0.7.0/heemod/inst/doc/i-reproduction.Rmd | 8 heemod-0.7.0/heemod/inst/doc/i-reproduction.html | 36 heemod-0.7.0/heemod/inst/examples/example_eval_strategy.R |only heemod-0.7.0/heemod/inst/examples/example_eval_strategy_newdata.R |only heemod-0.7.0/heemod/inst/examples/example_run_dsa.R | 1 heemod-0.7.0/heemod/inst/tabular/thr/output/acceptability.pdf |binary heemod-0.7.0/heemod/inst/tabular/thr/output/acceptability.png |binary heemod-0.7.0/heemod/inst/tabular/thr/output/cycle_values.csv | 502 +++- heemod-0.7.0/heemod/inst/tabular/thr/output/dsa.csv | 26 heemod-0.7.0/heemod/inst/tabular/thr/output/dsa.pdf |only heemod-0.7.0/heemod/inst/tabular/thr/output/dsa.png |only heemod-0.7.0/heemod/inst/tabular/thr/output/dsa_diff.pdf |only heemod-0.7.0/heemod/inst/tabular/thr/output/dsa_diff.png |only heemod-0.7.0/heemod/inst/tabular/thr/output/icer_by_group.csv | 18 heemod-0.7.0/heemod/inst/tabular/thr/output/psa.pdf |only heemod-0.7.0/heemod/inst/tabular/thr/output/psa.png |only heemod-0.7.0/heemod/inst/tabular/thr/output/psa_values.csv | 22 heemod-0.7.0/heemod/inst/tabular/thr/output/state_count_plot.pdf |only heemod-0.7.0/heemod/inst/tabular/thr/output/state_count_plot.png |only heemod-0.7.0/heemod/inst/tabular/thr/output/state_counts.csv | 1102 +++++++++- heemod-0.7.0/heemod/man/check_strategy_index.Rd |only heemod-0.7.0/heemod/man/combine_models.Rd | 4 heemod-0.7.0/heemod/man/compute_counts.Rd | 2 heemod-0.7.0/heemod/man/compute_icer.Rd | 6 heemod-0.7.0/heemod/man/compute_values.Rd | 2 heemod-0.7.0/heemod/man/define_strategy.Rd | 2 heemod-0.7.0/heemod/man/eval_strategy.Rd |only heemod-0.7.0/heemod/man/eval_strategy_newdata.Rd |only heemod-0.7.0/heemod/man/get_counts.Rd | 26 heemod-0.7.0/heemod/man/get_frontier.Rd | 2 heemod-0.7.0/heemod/man/get_matrix.Rd | 2 heemod-0.7.0/heemod/man/get_values.Rd | 28 heemod-0.7.0/heemod/man/heemod_scale.Rd |only heemod-0.7.0/heemod/man/plot.dsa.Rd |only heemod-0.7.0/heemod/man/plot.psa.Rd | 16 heemod-0.7.0/heemod/man/plot.run_model.Rd | 43 heemod-0.7.0/heemod/man/run_dsa.Rd | 9 heemod-0.7.0/heemod/man/run_model.Rd | 30 heemod-0.7.0/heemod/man/summary.run_model.Rd | 7 heemod-0.7.0/heemod/man/update-model.Rd | 13 heemod-0.7.0/heemod/tests/testthat/Rplots.pdf |binary heemod-0.7.0/heemod/tests/testthat/test_expand.R | 2 heemod-0.7.0/heemod/tests/testthat/test_heterogeneity.R | 48 heemod-0.7.0/heemod/tests/testthat/test_matrix.R | 21 heemod-0.7.0/heemod/tests/testthat/test_model.R | 141 - heemod-0.7.0/heemod/tests/testthat/test_parallel.R | 16 heemod-0.7.0/heemod/tests/testthat/test_probabilistic.R | 46 heemod-0.7.0/heemod/tests/testthat/test_run_model.R | 113 - heemod-0.7.0/heemod/tests/testthat/test_sensitivity.R | 53 heemod-0.7.0/heemod/tests/testthat/test_states.R | 13 heemod-0.7.0/heemod/tests/testthat/test_tabular_input.R | 2 heemod-0.7.0/heemod/vignettes/a-introduction.Rmd | 28 heemod-0.7.0/heemod/vignettes/c-homogeneous.Rmd | 50 heemod-0.7.0/heemod/vignettes/d-non-homogeneous.Rmd | 14 heemod-0.7.0/heemod/vignettes/e-probabilistic.Rmd | 17 heemod-0.7.0/heemod/vignettes/f-sensitivity.Rmd | 30 heemod-0.7.0/heemod/vignettes/g-heterogeneity.Rmd | 22 heemod-0.7.0/heemod/vignettes/h-tabular.Rmd | 5 heemod-0.7.0/heemod/vignettes/i-reproduction.Rmd | 8 135 files changed, 3571 insertions(+), 1933 deletions(-)
Title: Empirical Bayes Estimation of Dynamic Bayesian Networks
Description: Infer the adjacency matrix of a
network from time course data using an empirical Bayes
estimation procedure based on Dynamic Bayesian Networks.
Author: Andrea Rau <andrea.rau@inra.fr>
Maintainer: Andrea Rau <andrea.rau@inra.fr>
Diff between ebdbNet versions 1.2.3 dated 2013-07-26 and 1.2.5 dated 2016-11-21
DESCRIPTION | 17 +++++++++-------- MD5 | 11 ++++++----- NAMESPACE | 4 +++- NEWS | 4 ++++ README.md |only inst/CITATION | 2 +- man/ebdbNet-package.Rd | 6 +++--- 7 files changed, 26 insertions(+), 18 deletions(-)
Title: R Interface to C API of IBM ILOG CPLEX
Description: This is the R Interface to the C API of IBM ILOG CPLEX. It necessarily depends on IBM ILOG CPLEX (>= 12.1).
Author: C. Jonathan Fritzemeier [cre, ctb], Gabriel Gelius-Dietrich [aut]
Maintainer: C. Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>
Diff between cplexAPI versions 1.3.1 dated 2015-11-30 and 1.3.2 dated 2016-11-21
DESCRIPTION | 8 ++++---- MD5 | 21 +++++++++++---------- NAMESPACE | 1 + R/cplexAPI.R | 13 +++++++++++++ build/vignette.rds |binary inst/NEWS.Rd | 8 ++++++++ inst/c2r.map | 1 + inst/doc/cplexAPI.pdf |binary man/getNumQConstrsCPLEX.Rd |only src/cplexAPI.c | 21 ++++++++++++++++++++- src/cplexAPI.h | 3 +++ src/init.c | 1 + 12 files changed, 62 insertions(+), 15 deletions(-)
Title: Measurement Units for R Vectors
Description: Support for measurement units in R vectors; automatic propagation, conversion, derivation and simplification of units; raising errors in case of unit incompatibility. Compatible with difftime. Uses the UNIDATA udunits library and unit database for unit conversion and compatibility checking.
Author: Edzer Pebesma [aut, cre],
Thomas Mailund [aut]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between units versions 0.3 dated 2016-09-16 and 0.4 dated 2016-11-21
DESCRIPTION | 10 MD5 | 50 +- NAMESPACE | 4 R/arith.R | 8 R/misc.R | 4 R/options.R |only R/plot.R |only R/symbolic_units.R | 74 ++ TODO |only build/vignette.rds |binary demo/00Index | 4 demo/ggforce.R |only demo/year.R |only inst/doc/measurement_units_in_R.R | 85 +-- inst/doc/measurement_units_in_R.Rnw | 88 ++- inst/doc/measurement_units_in_R.pdf |binary inst/doc/units.R | 37 + inst/doc/units.Rmd | 72 ++ inst/doc/units.html | 872 ++++++++++++----------------------- man/hist.units.Rd |only man/parse_unit.Rd | 2 man/plot.units.Rd |only man/units_options.Rd |only tests/plot.R |only tests/testthat/test_arith.R | 10 tests/testthat/test_symbolic_units.R | 4 vignettes/fig1.pdf |binary vignettes/fig2.pdf |only vignettes/measurement_units_in_R.Rnw | 88 ++- vignettes/measurement_units_in_R.bib | 34 + vignettes/units.Rmd | 72 ++ 31 files changed, 799 insertions(+), 719 deletions(-)
Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement complex
random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain an
efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Cole Monnahan [ctb]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.7.4 dated 2016-09-21 and 1.7.5 dated 2016-11-21
DESCRIPTION | 8 - MD5 | 23 +-- NEWS | 18 ++ R/TMB.R | 38 +++- inst/include/Vectorize.hpp | 19 ++ inst/include/convenience.hpp | 40 +++++ inst/include/distributions_R.hpp | 87 +++++++++++ inst/include/lgamma.hpp | 52 ++++++ inst/include/tiny_ad/atomic.hpp | 20 ++ inst/include/tiny_ad/robust |only inst/include/tiny_ad/tiny_ad/tiny_ad.hpp | 51 ++++++ inst/include/tmb_core.hpp | 50 ++++++ inst/include/tmbutils/density.hpp | 237 +++++++++++++++++++++++++++++-- 13 files changed, 605 insertions(+), 38 deletions(-)
Title: Network Fingerprint Framework in R
Description: An implementation of the network fingerprint framework that introduced
in paper "Network fingerprint: a knowledge-based characterization of biomedical
networks" (Cui, 2015) <doi:10.1038/srep13286>. This method worked by making
systematic comparisons to a set of well-studied "basic networks", measuring
both the functional and topological similarity. A biological could be
characterized as a spectrum-like vector consisting of similarities to basic
networks. It shows great potential in biological network study.
Author: Yang Cao [aut, cre],
Fei Li [aut]
Maintainer: Yang Cao <yiluheihei@gmail.com>
Diff between NFP versions 0.99.1 dated 2016-08-31 and 0.99.2 dated 2016-11-21
DESCRIPTION | 25 +++++++++++++++++-------- MD5 | 14 +++++++------- README.md | 46 +++++++++++++++++++++++++++++++++------------- build/vignette.rds |binary inst/doc/NFP.R | 53 ++++++++++++++++++++++++++++++----------------------- inst/doc/NFP.Rnw | 51 +++++++++++++++++++++++++++++++++++---------------- inst/doc/NFP.pdf |binary vignettes/NFP.Rnw | 33 +++++++++++++++++++++++---------- 8 files changed, 145 insertions(+), 77 deletions(-)
Title: Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data
Description: Convert 'Ensembl' gene identifiers from Genotype-Tissue Expression (GTEx) data to identifiers in other annotation systems, including 'Entrez', 'HGNC', and 'UniProt'.
Author: Nan Xiao [aut, cre],
Gao Wang [aut],
Lei Sun [aut]
Maintainer: Nan Xiao <me@nanx.me>
Diff between grex versions 1.2 dated 2016-08-05 and 1.4 dated 2016-11-21
DESCRIPTION | 17 +++++++++---- MD5 | 32 +++++++++++++------------ NEWS.md | 8 ++++++ R/grex-datalist.R | 9 +++++++ R/grex-package.R | 1 R/grex.R | 15 +++++++---- R/sysdata.rda |binary build/vignette.rds |binary data/gtexv6.rda |binary data/gtexv6p.rda |only inst/doc/grex.R | 7 +++-- inst/doc/grex.Rmd | 22 ++++++++++------- inst/doc/grex.html | 63 +++++++++++++++++++++++++------------------------- man/grex.Rd | 15 +++++++---- man/gtexv6p.Rd |only vignettes/grex.Rmd | 22 ++++++++++------- vignettes/grex.css | 4 +-- vignettes/header.html | 2 - 18 files changed, 129 insertions(+), 88 deletions(-)
Title: A Helpful Way to Install R Packages Hosted on GitHub
Description: Provides an helpful way to install packages hosted on GitHub.
Author: Koji Makiyama [cre, aut],
Atsushi Hayakawa [ctb],
Shinya Uryu [ctb],
Hiroaki Yutani [ctb],
Nagi Teramo [ctb]
Maintainer: Koji Makiyama <hoxo.smile@gmail.com>
Diff between githubinstall versions 0.1.0 dated 2016-08-11 and 0.2.1 dated 2016-11-21
DESCRIPTION | 12 ++++++------ MD5 | 17 ++++++++++------- NAMESPACE | 5 ----- NEWS.md |only R/my_stringr.R |only R/utils_for_install.R | 25 +++++++++++++++---------- README.md |only build/vignette.rds |binary inst/doc/githubinstall.Rmd | 10 +++++----- inst/doc/githubinstall.html | 33 +++++++++++++++++---------------- vignettes/githubinstall.Rmd | 10 +++++----- 11 files changed, 58 insertions(+), 54 deletions(-)
Title: Scientific Journal and Sci-Fi Themed Color Palettes for
'ggplot2'
Description: A collection of 'ggplot2' color palettes inspired by
scientific journals, data visualization libraries, and
science fiction TV shows.
Author: Nan Xiao <me@nanx.me>, Miaozhu Li <miaozhu.li@duke.edu>
Maintainer: Nan Xiao <me@nanx.me>
Diff between ggsci versions 1.5 dated 2016-08-05 and 2.0 dated 2016-11-21
ggsci-1.5/ggsci/R/01.npg.R |only ggsci-1.5/ggsci/R/02.aaas.R |only ggsci-1.5/ggsci/R/03.lancet.R |only ggsci-1.5/ggsci/R/04.jco.R |only ggsci-1.5/ggsci/R/05.ucscgb.R |only ggsci-1.5/ggsci/R/06.uchicago.R |only ggsci-1.5/ggsci/R/07.simpsons.R |only ggsci-1.5/ggsci/R/08.rickandmorty.R |only ggsci-2.0/ggsci/DESCRIPTION | 12 - ggsci-2.0/ggsci/MD5 | 86 +++++----- ggsci-2.0/ggsci/NAMESPACE | 16 + ggsci-2.0/ggsci/NEWS.md | 10 + ggsci-2.0/ggsci/R/continuous.01.gsea.R |only ggsci-2.0/ggsci/R/discrete.01.npg.R |only ggsci-2.0/ggsci/R/discrete.02.aaas.R |only ggsci-2.0/ggsci/R/discrete.03.lancet.R |only ggsci-2.0/ggsci/R/discrete.04.jco.R |only ggsci-2.0/ggsci/R/discrete.05.ucscgb.R |only ggsci-2.0/ggsci/R/discrete.06.d3.R |only ggsci-2.0/ggsci/R/discrete.07.uchicago.R |only ggsci-2.0/ggsci/R/discrete.08.simpsons.R |only ggsci-2.0/ggsci/R/discrete.09.futurama.R |only ggsci-2.0/ggsci/R/discrete.10.rickandmorty.R |only ggsci-2.0/ggsci/R/ggsci-package.R | 1 ggsci-2.0/ggsci/R/sysdata.rda |binary ggsci-2.0/ggsci/README.md | 2 ggsci-2.0/ggsci/TODO | 5 ggsci-2.0/ggsci/build/vignette.rds |binary ggsci-2.0/ggsci/inst/doc/ggsci.R | 40 ++++ ggsci-2.0/ggsci/inst/doc/ggsci.Rmd | 163 ++++++++++++++----- ggsci-2.0/ggsci/inst/doc/ggsci.html | 149 +++++++++++++----- ggsci-2.0/ggsci/man/pal_aaas.Rd | 2 ggsci-2.0/ggsci/man/pal_d3.Rd |only ggsci-2.0/ggsci/man/pal_futurama.Rd |only ggsci-2.0/ggsci/man/pal_gsea.Rd |only ggsci-2.0/ggsci/man/pal_jco.Rd | 2 ggsci-2.0/ggsci/man/pal_lancet.Rd | 2 ggsci-2.0/ggsci/man/pal_npg.Rd | 2 ggsci-2.0/ggsci/man/pal_rickandmorty.Rd | 2 ggsci-2.0/ggsci/man/pal_simpsons.Rd | 2 ggsci-2.0/ggsci/man/pal_uchicago.Rd | 2 ggsci-2.0/ggsci/man/pal_ucscgb.Rd | 2 ggsci-2.0/ggsci/man/rgb_gsea.Rd |only ggsci-2.0/ggsci/man/scale_aaas.Rd | 4 ggsci-2.0/ggsci/man/scale_d3.Rd |only ggsci-2.0/ggsci/man/scale_futurama.Rd |only ggsci-2.0/ggsci/man/scale_gsea.Rd |only ggsci-2.0/ggsci/man/scale_jco.Rd | 4 ggsci-2.0/ggsci/man/scale_lancet.Rd | 4 ggsci-2.0/ggsci/man/scale_npg.Rd | 4 ggsci-2.0/ggsci/man/scale_rickandmorty.Rd | 4 ggsci-2.0/ggsci/man/scale_simpsons.Rd | 4 ggsci-2.0/ggsci/man/scale_uchicago.Rd | 4 ggsci-2.0/ggsci/man/scale_ucscgb.Rd | 4 ggsci-2.0/ggsci/vignettes/ggsci.Rmd | 163 ++++++++++++++----- ggsci-2.0/ggsci/vignettes/ggsci.css | 221 +++++++++++++++++++-------- ggsci-2.0/ggsci/vignettes/header.html | 2 57 files changed, 655 insertions(+), 263 deletions(-)
Title: Generating and Fitting Truncated `gamlss.family' Distributions
Description: This is an add on package to GAMLSS. The purpose of this
package is to allow users to defined truncated distributions in
GAMLSS models. The main function gen.trun() generates truncated
version of an existing GAMLSS family distribution.
Author: Mikis Stasinopoulos <mikis.stasinopoulos@gamlss.org>, Bob
Rigby <r.rigby@londonmet.ac.uk>
Maintainer: Mikis Stasinopoulos <mikis.stasinopoulos@gamlss.org>
Diff between gamlss.tr versions 4.3-6 dated 2016-05-18 and 5.0-0 dated 2016-11-21
DESCRIPTION | 14 +++++++------- MD5 | 20 ++++++++++---------- R/gen.trun-21-06-13.R | 3 ++- man/fitTail.Rd | 2 +- man/gamlss.tr.package.Rd | 6 +++--- man/gen.trun.Rd | 2 +- man/trun.Rd | 2 +- man/trun.d.Rd | 2 +- man/trun.p.Rd | 2 +- man/trun.q.Rd | 2 +- man/trun.r.Rd | 2 +- 11 files changed, 29 insertions(+), 28 deletions(-)
Title: Generalised Additive Models for Location Scale and Shape
Description: Functions for fitting, displaying and checking GAMLSS Models.
Author: Mikis Stasinopoulos [aut, cre, cph],
Bob Rigby [aut],
Vlasios Voudouris [ctb],
Calliope Akantziliotou [ctb],
Marco Enea [ctb],
Daniil Kiose [ctb]
Maintainer: Mikis Stasinopoulos <mikis.stasinopoulos@gamlss.org>
Diff between gamlss versions 5.0-0 dated 2016-10-18 and 5.0-1 dated 2016-11-21
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/gen-Likelihood.R | 9 +++++---- R/lms.R | 1 - R/term.plot-new.R | 3 ++- inst/doc/NEWS.txt | 6 ++++++ 6 files changed, 23 insertions(+), 16 deletions(-)
Title: Interactive Interfaces for Results Exploration
Description: Shiny interfaces and graphical functions for multivariate analysis results exploration.
Author: Julien Barnier [aut, cre]
Maintainer: Julien Barnier <julien.barnier@ens-lyon.fr>
Diff between explor versions 0.2.1 dated 2016-03-24 and 0.3.0 dated 2016-11-21
explor-0.2.1/explor/R/explor_CA.R |only explor-0.2.1/explor/R/explor_MCA.R |only explor-0.2.1/explor/R/explor_PCA.R |only explor-0.3.0/explor/DESCRIPTION | 14 explor-0.3.0/explor/MD5 | 81 +- explor-0.3.0/explor/NAMESPACE | 15 explor-0.3.0/explor/NEWS | 12 explor-0.3.0/explor/R/CA_plots.R |only explor-0.3.0/explor/R/MCA_plots.R |only explor-0.3.0/explor/R/PCA_plots.R |only explor-0.3.0/explor/R/explor.R | 67 -- explor-0.3.0/explor/R/explor_multi.R |only explor-0.3.0/explor/R/explor_multi_CA.R |only explor-0.3.0/explor/R/explor_multi_MCA.R |only explor-0.3.0/explor/R/explor_multi_PCA.R |only explor-0.3.0/explor/R/prepare_results_CA.R | 220 +++---- explor-0.3.0/explor/R/prepare_results_MASS_mca.R |only explor-0.3.0/explor/R/prepare_results_MCA.R | 314 +++++----- explor-0.3.0/explor/R/prepare_results_PCA.R | 291 +++++---- explor-0.3.0/explor/R/prepare_results_dudi_coa.R | 193 +++--- explor-0.3.0/explor/R/prepare_results_dudi_mca.R | 278 ++++---- explor-0.3.0/explor/R/prepare_results_dudi_pca.R | 6 explor-0.3.0/explor/R/prepare_results_prcomp.R |only explor-0.3.0/explor/R/prepare_results_princomp.R |only explor-0.3.0/explor/R/prepare_results_speMCA.R |only explor-0.3.0/explor/README.md | 25 explor-0.3.0/explor/build/vignette.rds |binary explor-0.3.0/explor/inst/doc/introduction_en.Rmd | 123 +++ explor-0.3.0/explor/inst/doc/introduction_en.html | 200 +++++- explor-0.3.0/explor/inst/doc/introduction_fr.Rmd | 117 +++ explor-0.3.0/explor/inst/doc/introduction_fr.html | 199 +++++- explor-0.3.0/explor/inst/po/en@quot/LC_MESSAGES/R-explor.mo |binary explor-0.3.0/explor/inst/po/fr/LC_MESSAGES/R-explor.mo |binary explor-0.3.0/explor/man/CA_var_plot.Rd |only explor-0.3.0/explor/man/MCA_ind_plot.Rd |only explor-0.3.0/explor/man/MCA_var_plot.Rd |only explor-0.3.0/explor/man/PCA_ind_plot.Rd |only explor-0.3.0/explor/man/PCA_var_plot.Rd |only explor-0.3.0/explor/man/explor.Rd | 14 explor-0.3.0/explor/man/prepare_results.Rd | 30 explor-0.3.0/explor/po/R-explor.pot | 128 ++-- explor-0.3.0/explor/po/R-fr.mo |binary explor-0.3.0/explor/po/R-fr.po | 226 ++++--- explor-0.3.0/explor/tests/testthat/test_prepare_results_CA.R | 9 explor-0.3.0/explor/tests/testthat/test_prepare_results_MASS_mca.R |only explor-0.3.0/explor/tests/testthat/test_prepare_results_MCA.R | 11 explor-0.3.0/explor/tests/testthat/test_prepare_results_PCA.R | 12 explor-0.3.0/explor/tests/testthat/test_prepare_results_dudi.coa.R | 1 explor-0.3.0/explor/tests/testthat/test_prepare_results_prcomp.R |only explor-0.3.0/explor/tests/testthat/test_prepare_results_princomp.R |only explor-0.3.0/explor/tests/testthat/test_prepare_results_speMCA.R |only explor-0.3.0/explor/vignettes/introduction_en.Rmd | 123 +++ explor-0.3.0/explor/vignettes/introduction_fr.Rmd | 117 +++ 53 files changed, 1854 insertions(+), 972 deletions(-)
Title: Construction, Simulation and Analysis of Boolean Networks
Description: Provides methods to reconstruct and generate synchronous,
asynchronous, probabilistic and temporal Boolean networks, and to
analyze and visualize attractors in Boolean networks.
Author: Christoph Müssel [aut],
Martin Hopfensitz [aut],
Dao Zhou [aut],
Hans A. Kestler [aut, cre],
Armin Biere [ctb] (contributed PicoSAT code),
Troy D. Hanson [ctb] (contributed uthash macros)
Maintainer: Hans A. Kestler <hans.kestler@uni-ulm.de>
Diff between BoolNet versions 2.1.1 dated 2015-02-25 and 2.1.3 dated 2016-11-21
DESCRIPTION | 11 - MD5 | 30 +-- NAMESPACE | 7 R/plotAttractors.R | 324 ++++++++++++--------------------- R/plotSequence.R | 299 ++++++++++++------------------ R/plotStateGraph.R | 143 +++++++++----- build/vignette.rds |binary inst/NEWS.Rd | 7 inst/doc/BoolNet_package_vignette.R | 3 inst/doc/BoolNet_package_vignette.Snw | 2 inst/doc/BoolNet_package_vignette.pdf |binary man/BoolNet-package.Rd | 4 man/plotAttractors.Rd | 20 +- man/plotSequence.Rd | 26 ++ man/plotStateGraph.Rd | 16 + vignettes/BoolNet_package_vignette.Snw | 2 16 files changed, 432 insertions(+), 462 deletions(-)
Title: Bayesian Fertility Projection
Description: Making probabilistic projections of total fertility rate for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova (hanas@uw.edu), Leontine Alkema (alkema@nus.edu.sg), Adrian Raftery (raftery@uw.edu), Bailey Fosdick (bfosdick@uw.edu), Patrick Gerland (gerland@un.org)
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesTFR versions 5.0-2 dated 2016-06-13 and 5.0-4 dated 2016-11-21
ChangeLog | 20 +++++++++++++- DESCRIPTION | 12 ++++---- MD5 | 28 +++++++++---------- NAMESPACE | 10 ++++--- R/diagnostics.R | 4 +- R/get_outputs.R | 6 ++-- R/plot_functions.R | 67 +++++++++++++++++++++++++++++++++++++---------- R/predict_tfr.R | 8 ++--- R/run_mcmc3.R | 2 - R/wpp_data.R | 8 ++--- man/bayesTFR-internal.Rd | 4 +- man/bayesTFR-package.Rd | 8 ++--- man/plot-DLcurve.Rd | 28 ++++++++++++++++--- tests/run_tests.R | 33 ++++++++++++----------- tests/test_functions.R | 10 ++++--- 15 files changed, 167 insertions(+), 81 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-12-25 0.5-1
2011-12-24 0.5
Title: Trades, Curves, Rating Tables, Add-on Tables, CSAs
Description: Contains trades from the five major assets classes and also
functionality to use pricing curves, rating tables, CSAs and add-on tables. The
implementation follows an object oriented logic whereby each trade inherits from
more abstract classes while also the curves/tables are objects. There is a lot
of functionality focusing on the counterparty credit risk calculations however
the package can be used for trading applications in general.
Author: Tasos Grivas
Maintainer: Tasos Grivas <info@openriskcalculator.com>
Diff between Trading versions 1.0 dated 2016-09-06 and 1.1 dated 2016-11-21
Trading-1.0/Trading/R/LoadSupervisoryData.R |only Trading-1.0/Trading/man/LoadSupervisoryData.Rd |only Trading-1.1/Trading/DESCRIPTION | 20 ++-- Trading-1.1/Trading/MD5 | 46 +++++---- Trading-1.1/Trading/NAMESPACE | 3 Trading-1.1/Trading/R/Bond.R | 16 +-- Trading-1.1/Trading/R/CSA.R | 98 ++++++++++++++++++-- Trading-1.1/Trading/R/Collateral.R |only Trading-1.1/Trading/R/Curve.R | 4 Trading-1.1/Trading/R/Equity.R | 16 +-- Trading-1.1/Trading/R/GetTradeDetails.R |only Trading-1.1/Trading/R/HashTable.R | 12 +- Trading-1.1/Trading/R/ParseTrades.R | 7 + Trading-1.1/Trading/R/Trade.R | 5 - Trading-1.1/Trading/inst/extdata/CSA.csv |only Trading-1.1/Trading/inst/extdata/CSA_basel.csv |only Trading-1.1/Trading/inst/extdata/coll.csv |only Trading-1.1/Trading/inst/extdata/coll_basel.csv |only Trading-1.1/Trading/inst/extdata/example_trades.csv | 42 ++++---- Trading-1.1/Trading/man/Bond-class.Rd | 5 - Trading-1.1/Trading/man/BondFuture-class.Rd | 3 Trading-1.1/Trading/man/CSA-class.Rd | 22 ++++ Trading-1.1/Trading/man/Collateral-class.Rd |only Trading-1.1/Trading/man/Curve-class.Rd | 2 Trading-1.1/Trading/man/Equity-class.Rd | 10 +- Trading-1.1/Trading/man/EquityIndexFuture-class.Rd | 5 - Trading-1.1/Trading/man/GetTradeDetails.Rd |only Trading-1.1/Trading/man/IRDSwapVol-class.Rd | 8 - Trading-1.1/Trading/man/ParseTrades.Rd | 7 + 29 files changed, 228 insertions(+), 103 deletions(-)