Title: Computing Subscores in Classical Test Theory and Item Response
Theory
Description: Functions for computing subscores for a test using different
methods in both classical test theory (CTT) and item response theory (IRT). This
package enables three sets of subscoring methods within the framework of CTT
and IRT: Wainer's augmentation method, Haberman's three subscoring methods, and
Yen's objective performance index (OPI). The package also includes the function
to compute Proportional Reduction of Mean Squared Errors (PRMSEs) in Haberman's
methods which are used to examine whether test subscores are of added value.
Author: Shenghai Dai [aut, cre],
Xiaolin Wang [aut],
Dubravka Svetina [aut]
Maintainer: Shenghai Dai <dais@indiana.edu>
Diff between subscore versions 1.3 dated 2016-08-17 and 2.0 dated 2016-12-02
subscore-1.3/subscore/R/RegOnSub.r |only subscore-1.3/subscore/R/RegOnTot.R |only subscore-1.3/subscore/R/RegOnTotSub.R |only subscore-1.3/subscore/R/Wainer.score.R |only subscore-1.3/subscore/man/RegOnSub.Rd |only subscore-1.3/subscore/man/RegOnTot.Rd |only subscore-1.3/subscore/man/RegOnTotSub.Rd |only subscore-1.3/subscore/man/Wainer.score.Rd |only subscore-2.0/subscore/DESCRIPTION | 20 ++++--- subscore-2.0/subscore/MD5 | 26 +++++---- subscore-2.0/subscore/NAMESPACE | 12 ++-- subscore-2.0/subscore/R/CTTsub.R | 74 ++++++++++++++------------- subscore-2.0/subscore/R/Yen.OPI.R |only subscore-2.0/subscore/R/subscore.Wainer.R |only subscore-2.0/subscore/R/subscore.s.r |only subscore-2.0/subscore/R/subscore.sx.R |only subscore-2.0/subscore/R/subscore.x.R |only subscore-2.0/subscore/man/CTTsub.Rd | 16 +++-- subscore-2.0/subscore/man/Yen.OPI.Rd |only subscore-2.0/subscore/man/subscore.Wainer.Rd |only subscore-2.0/subscore/man/subscore.s.Rd |only subscore-2.0/subscore/man/subscore.sx.Rd |only subscore-2.0/subscore/man/subscore.x.Rd |only 23 files changed, 82 insertions(+), 66 deletions(-)
Title: Get XKCD Comic from R
Description: Visualize your favorite XKCD comic strip directly from
R. XKCD web comic content is provided under the Creative
Commons Attribution-NonCommercial 2.5 License.
Author: Paolo Sonego [aut, cph, cre], Mikko Korpela [ctb]
Maintainer: Paolo Sonego <paolo.sonego@gmail.com>
Diff between RXKCD versions 1.7-6 dated 2016-09-13 and 1.7-7 dated 2016-12-02
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NAMESPACE | 1 - R/getXKCD.R | 21 ++++----------------- 4 files changed, 11 insertions(+), 25 deletions(-)
Title: R Bindings for 'Selenium WebDriver'
Description: Provides a set of R bindings for the 'Selenium 2.0 WebDriver'
(see <https://seleniumhq.github.io/docs/wd.html>
for more information) using the 'JsonWireProtocol' (see
<https://github.com/SeleniumHQ/selenium/wiki/JsonWireProtocol> for more
information). 'Selenium 2.0 WebDriver' allows driving a web browser
natively as a user would either locally or on a remote machine using
the Selenium server it marks a leap forward in terms of web browser
automation. Selenium automates web browsers (commonly referred to as
browsers). Using RSelenium you can automate browsers locally or
remotely.
Author: John Harrison [aut, cre] (R package RSelenium)
Maintainer: John Harrison <johndharrison0@gmail.com>
Diff between RSelenium versions 1.5.0 dated 2016-11-23 and 1.6.2 dated 2016-12-02
RSelenium-1.5.0/RSelenium/NEWS |only RSelenium-1.6.2/RSelenium/DESCRIPTION | 24 RSelenium-1.6.2/RSelenium/MD5 | 67 - RSelenium-1.6.2/RSelenium/NAMESPACE | 8 RSelenium-1.6.2/RSelenium/NEWS.md |only RSelenium-1.6.2/RSelenium/R/errorHandler.R | 175 +- RSelenium-1.6.2/RSelenium/R/remoteDriver.R | 419 ++++-- RSelenium-1.6.2/RSelenium/R/webElement.R | 160 +- RSelenium-1.6.2/RSelenium/README.md | 4 RSelenium-1.6.2/RSelenium/build/vignette.rds |binary RSelenium-1.6.2/RSelenium/inst/doc/OCRUG-webinar.Rmd | 9 RSelenium-1.6.2/RSelenium/inst/doc/OCRUG-webinar.html | 324 ++-- RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-basics.Rmd | 655 +++++----- RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-basics.html | 598 ++++----- RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-docker.Rmd | 2 RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-docker.html | 4 RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-headless.Rmd | 15 RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-headless.html | 8 RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-saucelabs.Rmd | 21 RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-saucelabs.html | 14 RSelenium-1.6.2/RSelenium/inst/doc/shinytesting.Rmd | 19 RSelenium-1.6.2/RSelenium/inst/doc/shinytesting.html | 478 +++---- RSelenium-1.6.2/RSelenium/man/errorHandler-class.Rd | 6 RSelenium-1.6.2/RSelenium/man/remoteDriver-class.Rd | 5 RSelenium-1.6.2/RSelenium/man/webElement-class.Rd | 6 RSelenium-1.6.2/RSelenium/tests/testthat/helper.R | 6 RSelenium-1.6.2/RSelenium/tests/testthat/test-alerts_tests.R |only RSelenium-1.6.2/RSelenium/tests/testthat/test-errorHandler.R |only RSelenium-1.6.2/RSelenium/tests/testthat/test-executing_javascript_tests.R | 14 RSelenium-1.6.2/RSelenium/tests/testthat/test-misc_remoteDriver_methods_tests.R | 12 RSelenium-1.6.2/RSelenium/tests/testthat/test-misc_webElement_methods_tests.R |only RSelenium-1.6.2/RSelenium/vignettes/OCRUG-webinar.Rmd | 9 RSelenium-1.6.2/RSelenium/vignettes/RSelenium-basics.Rmd | 655 +++++----- RSelenium-1.6.2/RSelenium/vignettes/RSelenium-docker.Rmd | 2 RSelenium-1.6.2/RSelenium/vignettes/RSelenium-headless.Rmd | 15 RSelenium-1.6.2/RSelenium/vignettes/RSelenium-saucelabs.Rmd | 21 RSelenium-1.6.2/RSelenium/vignettes/shinytesting.Rmd | 19 37 files changed, 2037 insertions(+), 1737 deletions(-)
Title: Plot a Model's Response and Residuals
Description: Plot model surfaces for a wide variety of models
using partial dependence plots and other techniques.
Also plot model residuals and other information on the model.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between plotmo versions 3.3.1 dated 2016-11-24 and 3.3.2 dated 2016-12-02
DESCRIPTION | 12 ++++----- MD5 | 36 ++++++++++++++++------------- NEWS | 12 +++++++++ R/c50.R |only R/gbm.R | 10 ++++++-- R/grid.R | 8 ++++-- R/plot_glmnet.R | 5 ++++ R/plotmo.R | 43 ++++++++++++++++++++++++++++------- R/singles.R | 29 ++++++++++++++++------- R/w1.R | 3 ++ inst/doc/modguide.pdf |binary inst/doc/plotmo-notes.pdf |binary inst/doc/plotres-notes.pdf |binary inst/slowtests/make.bat | 2 + inst/slowtests/test.c50.R |only inst/slowtests/test.c50.Rout.save |only inst/slowtests/test.c50.bat |only inst/slowtests/test.gbm.Rout.save | 1 inst/slowtests/test.glmnet.R | 16 ++++++++++++- inst/slowtests/test.glmnet.Rout.save | 34 ++++++++++++++++++++++++++- man/plotmo.Rd | 6 ++-- 21 files changed, 168 insertions(+), 49 deletions(-)
Title: Linear Models for Panel Data
Description: A set of estimators and tests for panel data.
Author: Yves Croissant [aut, cre],
Giovanni Millo [aut],
Kevin Tappe [aut],
Ott Toomet [ctb],
Christian Kleiber [ctb],
Achim Zeileis [ctb],
Arne Henningsen [ctb],
Liviu Andronic [ctb],
Nina Schoenfelder [ctb]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between plm versions 1.6-4 dated 2016-11-29 and 1.6-5 dated 2016-12-02
DESCRIPTION | 20 +++--- MD5 | 36 ++++++------ NEWS | 15 ++++- R/ercomp.R | 19 ++++++ R/ptest.R | 20 +++++- inst/doc/plm.R | 139 ++++++++++++++++++++++++----------------------- inst/doc/plm.pdf |binary inst/doc/plm.rnw | 115 ++++++++++++++++++++------------------ man/Hedonic.Rd | 2 man/make.pbalanced.Rd | 2 man/make.pconsecutive.Rd | 2 man/pwaldtest.Rd | 2 man/vcovBK.Rd | 6 +- man/vcovDC.Rd | 6 +- man/vcovHC.Rd | 6 +- man/vcovNW.Rd | 6 +- man/vcovSCC.Rd | 6 +- vignettes/bibliojss.bib | 31 ++++++++-- vignettes/plm.rnw | 115 ++++++++++++++++++++------------------ 19 files changed, 314 insertions(+), 234 deletions(-)
Title: Sequence ('FASTA'), Annotation ('GFF') and Variants ('VCF') for
17 Samples of 'P. Infestans" and 1 'P. Mirabilis'
Description: Genomic data for the plant pathogen "Phytophthora infestans." It
includes a variant file ('VCF'), a sequence file ('FASTA') and an annotation file
('GFF'). This package is intended to be used as example data for packages that
work with genomic data.
Author: Brian J. Knaus [cre, aut],
Niklaus J. Grunwald [aut]
Maintainer: Brian J. Knaus <briank.lists@gmail.com>
Diff between pinfsc50 versions 1.0.0 dated 2016-01-29 and 1.1.0 dated 2016-12-02
DESCRIPTION | 16 ++++++++++------ MD5 | 11 ++++++----- NAMESPACE | 3 ++- R/pinfsc50.R | 23 ++++++++++++----------- README.md | 1 + inst/CITATION |only man/pinfsc50.Rd | 24 +++++++++++++----------- 7 files changed, 44 insertions(+), 34 deletions(-)
Title: Estimation of Extreme Conditional Quantiles and Probabilities
Description: Extreme value theory, nonparametric kernel estimation, tail
conditional probabilities, extreme conditional quantile, adaptive estimation,
quantile regression, survival probabilities.
Author: Gilles Durrieu, Ion Grama, Kevin Jaunatre, Quang-Khoai Pham, Jean-Marie
Tricot
Maintainer: Kevin Jaunatre <kevin.jaunatre@univ-ubs.fr>
Diff between extremefit versions 0.1.3 dated 2016-11-07 and 0.2.0 dated 2016-12-02
DESCRIPTION | 6 - MD5 | 26 ++--- NAMESPACE | 1 R/PackageOxygen.R | 200 +++++++++++++++++++++++++++------------------- man/CriticalValue.Rd | 2 man/Gaussian.kernel.Rd | 12 +- man/LoadCurve.Rd | 19 ++-- man/TruncGauss.kernel.Rd | 2 man/dataOyster.Rd | 50 ++++++----- man/dataWind.Rd | 80 ++---------------- man/hill.ts.Rd | 9 ++ man/predict.hill.Rd | 9 -- man/predict.hill.adapt.Rd | 21 ++-- man/predict.hill.ts.Rd | 43 ++++----- 14 files changed, 231 insertions(+), 249 deletions(-)
Title: Species Distribution Modelling
Description: An extensible R framework for developing species distribution
models using individual and community-based approaches, generate ensembles of
models, evaluate the models, and predict species potential distributions in
space and time.
Author: Babak Naimi, Miguel B. Araujo
Maintainer: Babak Naimi <naimi.b@gmail.com>
Diff between sdm versions 1.0-28 dated 2016-10-16 and 1.0-32 dated 2016-12-02
DESCRIPTION | 12 ++-- MD5 | 31 +++++----- NAMESPACE | 4 - R/AAAClasses.R | 20 +++++- R/bioclim.R |only R/modelFrame.R | 43 ++++++++++---- R/predict.R | 115 ++++++++++++++++++++++++++-------------- R/sdmData.R | 18 +++--- R/sdmMethods.R | 8 +- R/show.R | 36 ++++++++---- R/zzz.R | 1 build/vignette.rds |binary inst/doc/quick_sdm.Rmd | 34 +++++++++++ inst/doc/quick_sdm.html | 84 ++++++++++++++++++++--------- inst/methods/sdm/bioclim.R |only inst/methods/sdm/bioclimDismo.R |only inst/methods/sdm/maxent.R | 6 +- vignettes/quick_sdm.Rmd | 34 +++++++++++ 18 files changed, 317 insertions(+), 129 deletions(-)
Title: Interface to 'typeform' Results
Description: An R interface to the 'typeform' <https://typeform.com> application program interface.
Also provides functions for downloading your results.
Author: Colin Gillespie [aut, cre]
Maintainer: Colin Gillespie <csgillespie@gmail.com>
Diff between rtypeform versions 0.1.1 dated 2016-03-31 and 0.2.0 dated 2016-12-02
DESCRIPTION | 11 ++--- MD5 | 25 +++++++----- NAMESPACE | 5 ++ NEWS.md | 5 ++ R/check_api_response.R |only R/get_all_typeforms.R | 23 ++++++++--- R/get_api.R | 10 ++++- R/get_results.R | 33 +++++++++++----- README.md | 64 +++++++++++++++++--------------- man/get_all_typeforms.Rd | 5 +- man/get_api.Rd |only man/get_results.Rd | 14 ++++--- tests/testthat/test_get_all_typeforms.R | 10 ++++- tests/testthat/test_get_linux_time.R |only tests/testthat/test_get_results.R | 13 ++++-- 15 files changed, 140 insertions(+), 78 deletions(-)
Title: Quantitative Fatty Acid Signature Analysis in R
Description: An implementation of Quantitative Fatty Acid Signature
Analysis (QFASA) in R. QFASA is a method of estimating the diet
composition of predators. The fundamental unit of information in
QFASA is a fatty acid signature (signature), which is a vector of
proportions describing the composition of fatty acids within lipids.
Signature data from at least one predator and from samples of all
potential prey types are required. Calibration coefficients, which
adjust for the differential metabolism of individual fatty acids by
predators, are also required. Given those data inputs, a predator
signature is modeled as a mixture of prey signatures and its diet
estimate is obtained as the mixture that minimizes a measure of
distance between the observed and modeled signatures. A variety of
estimation options and simulation capabilities are implemented.
Please refer to the vignette for additional details and references.
Author: Jeffrey F. Bromaghin [aut, cre]
Maintainer: Jeffrey F. Bromaghin <jbromaghin@usgs.gov>
Diff between qfasar versions 1.1.0 dated 2016-10-25 and 1.1.1 dated 2016-12-02
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/est_diet.R | 2 +- inst/doc/qfasar.html | 4 ++-- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Fast and Stable Estimation of the Probability of Informed
Trading (PIN)
Description: Utilities for fast and stable estimation of the probability of
informed trading (PIN) in the model introduced by Easley et al. (2002)
<DOI:10.1111/1540-6261.00493> are implemented. Since the basic model developed
by Easley et al. (1996) <DOI:10.1111/j.1540-6261.1996.tb04074.x> is nested in the
former due to equating the intensity of uninformed buys and sells, functionalities
can also be applied to this simpler model structure, if needed.
Author: Andreas Recktenwald [aut, cre]
Maintainer: Andreas Recktenwald <a.recktenwald@mx.uni-saarland.de>
Diff between pinbasic versions 0.1.0 dated 2016-10-24 and 0.2.0 dated 2016-12-02
DESCRIPTION | 12 ++++--- MD5 | 77 +++++++++++++++++++++++++++++++++----------- NAMESPACE | 6 +++ NEWS |only NEWS.md |only R/initialCAR.R | 55 +++++++++++--------------------- R/pin_calc.R | 4 +- R/pin_confint.R |only R/pin_est.R | 27 +++++++++------ R/pin_ll_CAR.R | 6 +-- R/pin_max.R | 89 +++++++++++++++++++++++++++++++++++++++++++--------- R/pinbasic.R | 9 +++-- R/qpin_plot.R | 44 +++++++++++++++++-------- R/quarterly_pin.R | 40 ++++++++++++----------- R/simulate_data.R |only R/summary.R | 13 ++++--- build/partial.rdb |binary build/vignette.rds |only inst |only man/initial_vals.Rd | 19 ++--------- man/pin_calc.Rd | 2 - man/pin_confint.Rd |only man/pin_est.Rd | 16 +++++++-- man/pin_est_core.Rd | 48 ++++++++++++++++++++++------ man/pin_ll.Rd | 4 +- man/pinbasic.Rd | 7 ++-- man/qpin.Rd | 27 ++++++++++----- man/qpin_plot.Rd | 7 ++-- man/simulateBS.Rd |only vignettes |only 30 files changed, 340 insertions(+), 172 deletions(-)
Title: Non-Linear Model Fitting of Time Distribution of Biological
Phenomena
Description: Fit biologically meaningful distribution functions to
time-sequence data (phenology), estimate parameters to draw the cumulative
distribution function and probability density function and calculate standard
statistical moments and percentiles.
Author: Nathan Eastwood [aut, cre],
Miguel Franco [ctb],
Paul Ramsay [ctb],
Nicola Steer [ctb]
Maintainer: Nathan Eastwood <nathan.eastwood@icloud.com>
Diff between nlstimedist versions 1.0.1 dated 2016-09-12 and 1.0.4 dated 2016-12-02
DESCRIPTION | 10 ++-- MD5 | 8 +-- R/plots.R | 6 +- README.md | 126 ++++++++++++++++++++++++++++++++++++++++++++++++----- build/vignette.rds |binary 5 files changed, 127 insertions(+), 23 deletions(-)
Title: Multiple Hypotheses Testing for Discrete Data
Description: A Comprehensive tool for almost all existing multiple testing
methods for discrete data. The package also provides some novel multiple testing
procedures controlling FWER/FDR for discrete data. Given discrete p-values
and their domains, the [method].p.adjust function returns adjusted p-values,
which can be used to compare with the nominal significant level alpha and make
decisions.
Author: Yalin Zhu, Wenge Guo
Maintainer: Yalin Zhu <yalin.zhu@outlook.com>
Diff between MHTdiscrete versions 0.1.1 dated 2016-10-27 and 0.1.2 dated 2016-12-02
DESCRIPTION | 12 ++++++------ MD5 | 47 ++++++++++++++++++++++++----------------------- NAMESPACE | 1 + R/FDRSD.R | 3 ++- R/FDRSU.R | 12 ++++++++---- R/FWERSD.R | 6 ++++-- R/FWERSS.R | 39 +++++++++++++++++++++++++++++++++++---- R/FWERSU.R | 7 ++++--- R/MHTdiscrete.R | 33 +++++++++++++++++++++++++++++++++ R/Pval.R | 4 ++-- man/GTBH.p.adjust.Rd | 5 ++++- man/GTBY.p.adjust.Rd | 5 ++++- man/MBH.p.adjust.Rd | 5 ++++- man/MBL.p.adjust.Rd | 5 ++++- man/MBY.p.adjust.Rd | 5 ++++- man/MBonf.p.adjust.Rd | 5 ++++- man/MHTdiscrete.Rd | 33 +++++++++++++++++++++++++++++++++ man/MHoch.p.adjust.Rd | 5 ++++- man/MHolm.p.adjust.Rd | 5 ++++- man/MixBonf.p.adjust.Rd |only man/Roth.p.adjust.Rd | 5 ++++- man/Sidak.p.adjust.Rd | 5 ++++- man/TH.p.adjust.Rd | 5 ++++- man/Tarone.p.adjust.Rd | 7 +++++-- man/getPval.Rd | 4 ++-- 25 files changed, 203 insertions(+), 60 deletions(-)
Title: Build Error Correction Models
Description: Functions for easy building of error correction models (ECM) for time series regression.
Author: Gaurav Bansal
Maintainer: Gaurav Bansal <gaurbans@gmail.com>
Diff between ecm versions 0.1.0 dated 2016-10-21 and 0.2.0 dated 2016-12-02
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/ecmback.r | 52 ++++++++++++++++++++++++++++++---------------------- R/ecmpredict.r | 23 ++++++++++++----------- man/ecmback.Rd | 4 +++- 5 files changed, 52 insertions(+), 41 deletions(-)
Title: The CShapes Dataset and Utilities
Description: Package for CShapes, a GIS dataset of country boundaries (1946-today). Includes functions for data extraction and the computation of distance matrices and -lists.
Author: Nils B. Weidmann <nils.weidmann@uni-konstanz.de>, Kristian Skrede Gleditsch <ksg@essex.ac.uk>
Maintainer: Nils B. Weidmann <nils.weidmann@uni-konstanz.de>
Diff between cshapes versions 0.5-1 dated 2015-10-30 and 0.6 dated 2016-12-02
ChangeLog | 16 +++++ DESCRIPTION | 12 ++-- MD5 | 26 ++++----- R/cshp.R | 2 R/distlist.R | 2 R/distmatrix.R | 2 inst/shp/cshapes.dbf |binary inst/shp/cshapes.shp |binary inst/shp/cshapes.shx |binary inst/shp/cshapes_shapefile_documentation.txt | 8 +- man/cshapes-package.Rd | 4 - man/cshp.Rd | 74 +++++++++++++-------------- man/distlist.Rd | 2 man/distmatrix.Rd | 2 14 files changed, 83 insertions(+), 67 deletions(-)
Title: Read and Write from the System Clipboard
Description: Simple utility functions to read from and write to the Windows,
OS X, and X11 clipboards.
Author: Matthew Lincoln [aut, cre],
Louis Maddox [ctb],
Steve Simpson [ctb],
Jennifer Bryan [ctb]
Maintainer: Matthew Lincoln <matthew.d.lincoln@gmail.com>
Diff between clipr versions 0.3.0 dated 2016-11-19 and 0.3.1 dated 2016-12-02
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 8 ++++++++ R/linux_clipboard.R | 24 ++++++++++++++++-------- tests/testthat/test_render.R | 34 ++++++++++++++++++++++------------ 5 files changed, 53 insertions(+), 27 deletions(-)
Title: Analyze Bunching in a Kink or Notch Setting
Description: View and analyze data where bunching is expected. Estimate counter-
factual distributions. For earnings data, estimate the compensated
elasticity of earnings w.r.t. the net-of-tax rate.
Author: Itai Trilnick [aut, cre]
Maintainer: Itai Trilnick <itai.trilnick@berkeley.edu>
Diff between bunchr versions 1.0.1 dated 2016-11-09 and 1.1.0 dated 2016-12-02
DESCRIPTION | 8 ++++---- MD5 | 23 ++++++++++++++--------- NEWS.md | 6 ++++++ R/bunchApp.R |only R/bunchr.R | 4 +++- build/vignette.rds |binary inst/bunchApp |only inst/doc/bunching_with_bunchr.Rmd | 1 + inst/doc/bunching_with_bunchr.html | 5 +++-- inst/doc/notch_estimation.html | 4 ++-- man/bunchApp.Rd |only man/bunchr.Rd | 4 +++- vignettes/bunching_with_bunchr.Rmd | 1 + 13 files changed, 37 insertions(+), 19 deletions(-)
Title: Modelling Heterogeneity in Paired Comparison Data
Description: Performs 'BTLLasso', a method to include different types of variables in paired
comparison models and, therefore, to allow for heterogeneity between subjects. Variables can be subject-specific, object-specific and subject-object-specific and
can have an influence on the attractiveness/strength of the objects. Suitable L1 penalty terms are used
to cluster certain effects and to reduce the complexity of the models.
Author: Gunther Schauberger
Maintainer: Gunther Schauberger <gunther@stat.uni-muenchen.de>
Diff between BTLLasso versions 0.1-3 dated 2016-11-22 and 0.1-4 dated 2016-12-02
DESCRIPTION | 8 ++++---- MD5 | 36 ++++++++++++++++++------------------ NAMESPACE | 2 +- R/BTLLasso-package.R | 4 ++-- R/RcppExports.R | 2 +- R/ci.BTLLasso.R | 37 ++++++++++++++++++++++++++++++------- R/design.BTLLasso.R | 30 +++++++++++++++++++++++------- R/paths.R | 9 ++++++++- R/print.cv.BTLLasso.R | 19 +++++++++++++++++-- R/singlepaths.R | 28 ++++++++++++++++++++-------- data/Buli1516.RData |binary data/GLES.RData |binary data/GLESsmall.RData |binary man/GLES.Rd | 4 ++-- man/ci.BTLLasso.Rd | 9 ++++++--- man/print.cv.BTLLasso.Rd | 5 ++++- man/singlepaths.Rd | 7 +++++-- src/RcppExports.cpp | 22 +++++++++++----------- src/cppfunctions.cpp | 8 ++++---- 19 files changed, 156 insertions(+), 74 deletions(-)
Title: Block, Assign, and Diagnose Potential Interference in Randomized
Experiments
Description: Blocks units into experimental blocks, with one unit per treatment condition, by creating a measure of multivariate distance between all possible pairs of units. Maximum, minimum, or an allowable range of differences between units on one variable can be set. Randomly assign units to treatment conditions. Diagnose potential interference between units assigned to different treatment conditions. Write outputs to .tex and .csv files.
Author: Ryan T. Moore and Keith Schnakenberg
Maintainer: Ryan T. Moore <rtm@american.edu>
Diff between blockTools versions 0.6-2 dated 2015-01-09 and 0.6-3 dated 2016-12-02
CHANGELOG | 8 + DESCRIPTION | 10 - LICENSE | 2 MD5 | 20 +-- NAMESPACE | 4 R/assg2xBalance.R | 11 +- R/block.R | 15 ++ R/naive.R | 2 man/block.Rd | 5 man/blockTools-package.Rd | 7 - src/util.c | 232 +++++++++++++++++++++++----------------------- 11 files changed, 170 insertions(+), 146 deletions(-)
Title: Bayesian Projection of Life Expectancy
Description: Making probabilistic projections of life expectancy for all countries of the world, using a Bayesian hierarchical model <doi:10.1007/s13524-012-0193-x>.
Author: Hana Sevcikova, Adrian Raftery, Jennifer Chunn
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesLife versions 3.0-1 dated 2016-11-21 and 3.0-3 dated 2016-12-02
bayesLife-3.0-1/bayesLife/inst/ex-data/last.dump.rda |only bayesLife-3.0-3/bayesLife/ChangeLog | 10 ++ bayesLife-3.0-3/bayesLife/DESCRIPTION | 10 +- bayesLife-3.0-3/bayesLife/MD5 | 15 ++-- bayesLife-3.0-3/bayesLife/NAMESPACE | 3 bayesLife-3.0-3/bayesLife/R/plot_functions.R | 61 +++++++++++++++--- bayesLife-3.0-3/bayesLife/man/bayesLife-package.Rd | 4 - bayesLife-3.0-3/bayesLife/man/e0.DLcurve.plot.Rd | 13 +++ bayesLife-3.0-3/bayesLife/man/e0.trajectories.plot.Rd | 12 ++- 9 files changed, 98 insertions(+), 30 deletions(-)
Title: Companion to Applied Linear Statistical Models
Description: Functions and Data set presented in Applied Linear Statistical Models Fifth Edition (Chapters 1-9 and 16-18), Michael H. Kutner; Christopher J. Nachtsheim; John Neter; William Li, 2005. (ISBN-10: 0071122214, ISBN-13: 978-0071122214) that do not exist in R, are gathered in this package. The whole book will be covered in the next versions.
Author: Ali Ghanbari <a.ghanbari541@gmail.com>
Maintainer: Ali Ghanbari <a.ghanbari541@gmail.com>
Diff between ALSM versions 0.1.2 dated 2016-11-22 and 0.1.3 dated 2016-12-02
DESCRIPTION | 6 ++-- MD5 | 10 ++++---- NAMESPACE | 3 ++ R/16_17_18_oneway.R | 65 +++++++++++++++++++++++++++++++++------------------- R/6_ci.reg.R | 4 +-- man/oneway.Rd | 5 +++- 6 files changed, 59 insertions(+), 34 deletions(-)
Title: Cluster Ensembles
Description: CLUster Ensembles.
Author: Kurt Hornik [aut, cre],
Walter Böhm [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between clue versions 0.3-51 dated 2016-01-06 and 0.3-52 dated 2016-12-02
DESCRIPTION | 6 - MD5 | 65 +++++++++--------- build/partial.rdb |only build/vignette.rds |binary data/CKME.rda |binary data/Cassini.rda |binary data/GVME.rda |binary data/GVME_Consensus.rda |binary data/Kinship82.rda |binary data/Kinship82_Consensus.rda |binary data/Phonemes.rda |binary inst/doc/clue.Rnw | 2 inst/doc/clue.pdf |binary man/GVME.Rd | 1 man/GVME_Consensus.Rd | 4 - man/Kinship82.Rd | 3 man/Kinship82_Consensus.Rd | 1 man/Phonemes.Rd | 1 man/cl_agreement.Rd | 13 ++- man/cl_bag.Rd | 1 man/cl_consensus.Rd | 5 + man/cl_dissimilarity.Rd | 15 +++- man/cl_pam.Rd | 1 man/cl_pclust.Rd | 1 man/cl_validity.Rd | 1 man/kmedoids.Rd | 1 man/l1_fit_ultrametric.Rd | 2 man/lattice.Rd | 1 man/ls_fit_addtree.Rd | 2 man/ls_fit_ultrametric.Rd | 4 + man/partition.Rd | 12 +-- man/sumt.Rd | 6 + vignettes/clue.Rnw | 2 vignettes/cluster.bib | 154 ++++++++++++++++++++++++++++++++++++------- 34 files changed, 228 insertions(+), 76 deletions(-)
Title: R Code for Mark Analysis
Description: An interface to the software package MARK that constructs input
files for MARK and extracts the output. MARK was developed by Gary White
and is freely available at <http://www.phidot.org/software/mark/downloads/>
but is not open source.
Author: Jeff Laake <jeff.laake@noaa.gov> with code contributions from Eldar
Rakhimberdiev, Ben Augustine and Daniel Turek, and example data and analysis
from Bret Collier, Jay Rotella, David Pavlacky,Andrew Paul and Luke Eberhart-
Phillips.
Maintainer: Jeff Laake <jefflaake@gmail.com>
Diff between RMark versions 2.2.0 dated 2016-06-23 and 2.2.2 dated 2016-12-02
DESCRIPTION | 12 ++++++------ MD5 | 42 +++++++++++++++++++++--------------------- NEWS | 26 ++++++++++++++++++++++++++ R/RMark-package.R | 18 +++++++++++------- R/convert.inp.r | 2 +- R/export.MARK.r | 8 +++++++- R/export.model.r | 17 +++++++++++++---- R/extract.mark.output.R | 16 ++++++++-------- R/get.link.R | 2 +- R/get.real.R | 4 ++-- R/make.mark.model.R | 34 +++++++++++++++++++++++++++------- R/mark.R | 2 +- R/process.data.R | 29 +++++++++++++++++++++++------ R/zzz.R | 2 +- inst/models.txt | 2 ++ inst/parameters.txt | 23 ++++++++++++++++------- man/ABeginnersGuide.Rd | 4 ++-- man/Burnham.Rd | 2 +- man/LogitNormalMR.Rd | 9 ++++++++- man/convert.inp.Rd | 2 +- man/mark.Rd | 2 +- man/process.data.Rd | 4 +++- 22 files changed, 182 insertions(+), 80 deletions(-)
Title: Wrapper for the 'Intro.js' Library
Description: A wrapper for the 'Intro.js' library (For more info: <http://www.introjs.com>).
This package makes it easy to include step-by-step introductions, and clickable hints in a 'Shiny'
application. It supports both static introductions in the UI, and programmatic introductions from
the server-side.
Author: Carl Ganz [aut, cre],
Afshin Mehrabani [ctb, cph] (intro.js in javascript/introjs)
Maintainer: Carl Ganz <carlganz@gmail.com>
Diff between rintrojs versions 0.1.1 dated 2016-10-18 and 0.1.2 dated 2016-12-02
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS.md | 4 ++++ R/introjs.R | 43 +++++++++++++++++++++++++++++++++---------- README.md | 2 +- man/introBox.Rd | 4 ++-- man/introjs.Rd | 13 ++++--------- man/introjsUI.Rd |only 8 files changed, 54 insertions(+), 31 deletions(-)
Title: Data Visualization Tools for Statistical Analysis Results
Description: Unified plotting tools for statistics commonly used, such as GLM,
time series, PCA families, clustering and survival analysis. The package offers
a single plotting interface for these analysis results and plots in a unified
style using 'ggplot2'.
Author: Masaaki Horikoshi [aut, cre],
Yuan Tang [aut, cph]
Maintainer: Masaaki Horikoshi <sinhrks@gmail.com>
Diff between ggfortify versions 0.2.0 dated 2016-06-02 and 0.3.0.0 dated 2016-12-02
DESCRIPTION | 24 ++-- MD5 | 219 +++++++++++++++++++------------------ NAMESPACE | 17 ++ R/base_fortify_ts.R | 12 +- R/fortify_basis.R |only R/fortify_raster.R |only R/fortify_stats.R | 17 -- R/fortify_vars.R | 2 R/plotlib.R | 13 ++ inst/CITATION |only inst/doc/basics.html | 38 +++--- inst/doc/intro_Chinese.html | 82 ++++++------- inst/doc/plot_dist.html | 10 - inst/doc/plot_lm.html | 16 +- inst/doc/plot_map.html | 14 +- inst/doc/plot_pca.html | 42 +++---- inst/doc/plot_surv.html | 12 +- inst/doc/plot_ts.html | 70 +++++------ man/apply_facets.Rd | 2 man/as_tibble.basis.Rd |only man/autoplot.MSM.lm.Rd | 2 man/autoplot.RasterCommon.Rd |only man/autoplot.SpatialCommon.Rd | 2 man/autoplot.aareg.Rd | 2 man/autoplot.acf.Rd | 2 man/autoplot.basis.Rd |only man/autoplot.breakpoints.Rd | 2 man/autoplot.cpt.Rd | 2 man/autoplot.cv.glmnet.Rd | 2 man/autoplot.density.Rd | 2 man/autoplot.forecast.Rd | 2 man/autoplot.ggmultiplot.Rd | 2 man/autoplot.ggplot.Rd | 2 man/autoplot.glmnet.Rd | 2 man/autoplot.kmeans.Rd | 2 man/autoplot.list.Rd | 2 man/autoplot.lm.Rd | 2 man/autoplot.map.Rd | 2 man/autoplot.matrix.Rd | 2 man/autoplot.pca_common.Rd | 2 man/autoplot.spec.Rd | 2 man/autoplot.stepfun.Rd | 2 man/autoplot.survfit.Rd | 2 man/autoplot.ts.Rd | 2 man/autoplot.tsmodel.Rd | 2 man/autoplot.varprd.Rd | 2 man/cbind_wraps.Rd | 2 man/check_names.Rd | 2 man/confint.acf.Rd | 2 man/deprecate.warning.Rd | 2 man/fitted.ar.Rd | 2 man/fortify.MSM.lm.Rd | 2 man/fortify.RasterCommon.Rd |only man/fortify.SpatialCommon.Rd | 2 man/fortify.aareg.Rd | 2 man/fortify.acf.Rd | 2 man/fortify.basis.Rd |only man/fortify.cpt.Rd | 2 man/fortify.cv.glmnet.Rd | 2 man/fortify.density.Rd | 2 man/fortify.dist.Rd | 2 man/fortify.ets.Rd | 2 man/fortify.factanal.Rd | 2 man/fortify.forecast.Rd | 2 man/fortify.glmnet.Rd | 2 man/fortify.kmeans.Rd | 2 man/fortify.lfda.Rd | 2 man/fortify.list.Rd | 2 man/fortify.matrix.Rd | 2 man/fortify.prcomp.Rd | 2 man/fortify.spec.Rd | 2 man/fortify.stepfun.Rd | 2 man/fortify.survfit.Rd | 2 man/fortify.table.Rd | 2 man/fortify.ts.Rd | 2 man/fortify.tsmodel.Rd | 2 man/fortify.varprd.Rd | 2 man/fortify_base.Rd | 2 man/fortify_map.Rd | 2 man/geom_confint.Rd | 2 man/geom_factory.Rd | 2 man/get.dtindex.Rd | 2 man/get.dtindex.continuous.Rd | 2 man/get.layout.Rd | 2 man/get_geom_function.Rd | 2 man/ggbiplot.Rd | 2 man/ggcpgram.Rd | 2 man/ggdistribution.Rd | 2 man/ggfortify.Rd | 2 man/ggfreqplot.Rd | 2 man/gglagplot.Rd | 2 man/ggmultiplot-class.Rd | 2 man/ggtsdiag.Rd | 2 man/grid.draw.ggmultiplot.Rd |only man/infer.Rd | 2 man/is.univariate.Rd | 2 man/is_derived_from.Rd | 2 man/plot_confint.Rd | 2 man/plot_label.Rd | 2 man/plus-ggmultiplot-ANY-method.Rd | 2 man/post_autoplot.Rd | 2 man/post_fortify.Rd | 2 man/print-ggmultiplot-method.Rd | 2 man/rbind_ts.Rd | 2 man/residuals.ar.Rd | 2 man/show-ggmultiplot-method.Rd | 2 man/support_autoplot.Rd | 2 man/unscale.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test-basis.R |only tests/testthat/test-forecast.R | 2 tests/testthat/test-raster.R |only tests/testthat/test-stats-lm.R | 9 + tests/testthat/test-surv.R | 7 - tests/testthat/test-ts.R | 12 +- tests/testthat/test-vars.R | 15 ++ 116 files changed, 432 insertions(+), 369 deletions(-)
More information about FactoRizationMachines at CRAN
Permanent link
Title: Companion to Applied Regression
Description:
Functions and Datasets to Accompany J. Fox and S. Weisberg,
An R Companion to Applied Regression, Second Edition, Sage, 2011.
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Daniel Adler [ctb],
Douglas Bates [ctb],
Gabriel Baud-Bovy [ctb],
Steve Ellison [ctb],
David Firth [ctb],
Michael Friendly [ctb],
Gregor Gorjanc [ctb],
Spencer Graves [ctb],
Richard Heiberger [ctb],
Rafael Laboissiere [ctb],
Georges Monette [ctb],
Duncan Murdoch [ctb],
Henric Nilsson [ctb],
Derek Ogle [ctb],
Brian Ripley [ctb],
William Venables [ctb],
David Winsemius [ctb],
Achim Zeileis [ctb],
R-Core [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between car versions 2.1-3 dated 2016-08-11 and 2.1-4 dated 2016-12-02
DESCRIPTION | 17 ++- MD5 | 151 +++++++++++++++++---------------- NAMESPACE | 16 ++- NEWS | 16 +++ R/Boxplot.R | 20 ++++ R/RcppExports.R |only R/adaptiveKernel.R |only R/densityPlot.R | 66 ++++++++++---- R/powerTransform.R | 9 +- R/powerTransformlmer.R |only R/scatterplotSmoothers.R | 116 ++++++++++++++----------- R/skewPower.R | 198 ++++++++++++++++++++++++++++++++++---------- R/spreadLevelPlot.R | 13 ++ build/vignette.rds |binary data/AMSsurvey.rda |binary data/Adler.rda |binary data/Angell.rda |binary data/Anscombe.rda |binary data/Baumann.rda |binary data/Bfox.rda |binary data/Blackmore.rda |binary data/Burt.rda |binary data/CanPop.rda |binary data/Chile.rda |binary data/Chirot.rda |binary data/Cowles.rda |binary data/Davis.rda |binary data/DavisThin.rda |binary data/Depredations.rda |binary data/Duncan.rda |binary data/Ericksen.rda |binary data/Florida.rda |binary data/Freedman.rda |binary data/Friendly.rda |binary data/Ginzberg.rda |binary data/Greene.rda |binary data/Guyer.rda |binary data/Hartnagel.rda |binary data/Highway1.rda |binary data/KosteckiDillon.rda |binary data/Leinhardt.rda |binary data/LoBD.rda |binary data/Mandel.rda |binary data/Migration.rda |binary data/Moore.rda |binary data/Mroz.rda |binary data/OBrienKaiser.rda |binary data/Ornstein.rda |binary data/Pottery.rda |binary data/Prestige.rda |binary data/Quartet.rda |binary data/Robey.rda |binary data/SLID.rda |binary data/Sahlins.rda |binary data/Salaries.rda |binary data/Soils.rda |binary data/States.rda |binary data/Transact.rda |binary data/UN.rda |binary data/USPop.rda |binary data/Vocab.rda |binary data/WeightLoss.rda |binary data/Womenlf.rda |binary data/Wong.rda |binary data/Wool.rda |binary inst/doc/embedding.pdf |binary man/Boxplot.Rd | 18 +++- man/Highway1.Rd | 8 - man/ScatterplotSmoothers.Rd | 19 ++-- man/boxCox.Rd | 10 +- man/car-package.Rd | 9 +- man/densityPlot.Rd | 69 +++++++++++---- man/invResPlot.Rd | 2 man/plot.powerTransform.Rd | 4 man/powerTransform.Rd | 41 ++++++--- man/skewPower.Rd | 67 +++++++------- man/spreadLevelPlot.Rd | 11 ++ man/testTransform.Rd | 11 ++ 78 files changed, 591 insertions(+), 300 deletions(-)
Title: Explorer of World Population Prospects
Description: Explore data in the 'wpp2015' (or 2012, 2010) package using a 'shiny' interface.
Author: Hana Sevcikova <hanas@uw.edu>
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between wppExplorer versions 2.0-0 dated 2016-11-01 and 2.0-1 dated 2016-12-02
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/explore/server.R | 2 +- man/wppExplorer-package.Rd | 4 ++-- 5 files changed, 15 insertions(+), 11 deletions(-)
Title: Temporal Sensory Data Analysis
Description: Analysis and visualization of data from temporal sensory methods, including for temporal check-all-that-apply (TCATA) and temporal dominance of sensations (TDS).
Author: J. C. Castura [aut, cre]
Maintainer: J. C. Castura <jcastura@compusense.com>
Diff between tempR versions 0.9.9.7 dated 2016-06-28 and 0.9.9.8 dated 2016-12-02
DESCRIPTION | 8 - MD5 | 36 ++-- NAMESPACE | 4 R/tcata.R | 328 +++++++++++++++++++++++++++++++------------ R/tds.R | 43 +++-- data/bars.rda |binary data/ojtcata.rda |only data/ojtds.rda |only data/syrah.rda |binary man/bootstrap.band.Rd |only man/count.selections.Rd |only man/fill.gaps.Rd | 14 - man/get.decluttered.Rd |only man/get.differences.Rd | 12 - man/get.mat.diff.sign.Rd | 14 - man/get.significance.diff.Rd | 12 - man/get.times.Rd | 13 + man/make.palettes.Rd |only man/ojtcata.Rd |only man/ojtds.Rd |only man/plot_pca.trajectories.Rd | 7 man/std.time.Rd | 2 man/tcata.line.plot.Rd | 23 +++ 23 files changed, 356 insertions(+), 160 deletions(-)
Title: Learning Interactions via Hierarchical Group-Lasso
Regularization
Description: Group-Lasso INTERaction-NET. Fits linear pairwise-interaction models that satisfy strong hierarchy: if an interaction coefficient is estimated to be nonzero, then its two associated main effects also have nonzero estimated coefficients. Accommodates categorical variables (factors) with arbitrary numbers of levels, continuous variables, and combinations thereof. Implements the machinery described in the paper "Learning interactions via hierarchical group-lasso regularization" (JCGS 2015, Volume 24, Issue 3). Michael Lim & Trevor Hastie (2015) <DOI:10.1080/10618600.2014.938812>.
Author: Michael Lim, Trevor Hastie
Maintainer: Michael Lim <michael626@gmail.com>
Diff between glinternet versions 1.0.1 dated 2016-11-14 and 1.0.2 dated 2016-12-02
DESCRIPTION | 8 +++---- MD5 | 8 +++---- R/group_lasso.r | 6 ++--- R/standardize.r | 2 - src/fista.c | 63 +++++++++++++++++++++++++++++++------------------------- 5 files changed, 47 insertions(+), 40 deletions(-)