Fri, 02 Dec 2016

New package PepSAVIms with initial version 0.9.0
Package: PepSAVIms
Type: Package
Title: PepSAVI-MS Data Analysis
Version: 0.9.0
Date: 2016-11-30
Authors@R: c( person("Pritchard", "David", email="dpritch@live.unc.edu", role=c("aut", "cre")), person("Kirkpatrick", "Christine", email="ckirkpat@live.unc.edu", role="aut"))
Description: An implementation of the data processing and data analysis portion of a pipeline named the PepSAVI-MS which is currently under development by the Hicks laboratory at the University of North Carolina. The statistical analysis package presented herein provides a collection of software tools used to facilitate the prioritization of putative bioactive peptides from a complex biological matrix. Tools are provided to deconvolute mass spectrometry features into a single representation for each peptide charge state, filter compounds to include only those possibly contributing to the observed bioactivity, and prioritize these remaining compounds for those most likely contributing to each bioactivity data set.
License: CC BY-NC-SA 4.0
LazyData: TRUE
Depends: R (>= 3.0.0)
Suggests: testthat, knitr
Imports: elasticnet
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-02 15:00:07 UTC; dpritch
Author: Pritchard David [aut, cre], Kirkpatrick Christine [aut]
Maintainer: Pritchard David <dpritch@live.unc.edu>
Repository: CRAN
Date/Publication: 2016-12-03 01:34:44

More information about PepSAVIms at CRAN
Permanent link

New package jpndistrict with initial version 0.1.0
Package: jpndistrict
Type: Package
Title: Create Japanese Administration Area and Office Maps
Version: 0.1.0
Authors@R: c(person(given = "Shinya", family = "Uryu", email = "suika1127@gmail.com", role = c("aut", "cre")))
Maintainer: Shinya Uryu <suika1127@gmail.com>
Description: Utilizing the data that Japanese administration area provided by the National Land Numerical Information download service (<http://nlftp.mlit.go.jp/ksj/index.html>).
Depends: R (>= 3.1.0)
Imports: dplyr, geojsonio, ggghost, ggplot2, ggthemes, leaflet, magrittr, miniUI, readr, rgeos, rmapshaper, shiny (>= 0.13), sp, spdplyr, stringi
Suggests: devtools, jpmesh, knitr, rmarkdown, rvest, plotly, purrr, testthat, tidyr
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
URL: https://github.com/uribo/jpndistrict
BugReports: https://github.com/uribo/jpndistrict/issues
NeedsCompilation: no
Packaged: 2016-12-02 12:45:39 UTC; uri
Author: Shinya Uryu [aut, cre]
Repository: CRAN
Date/Publication: 2016-12-03 01:32:53

More information about jpndistrict at CRAN
Permanent link

New package yuimaGUI with initial version 0.9.5
Package: yuimaGUI
Type: Package
Title: A Graphical User Interface for the 'yuima' Package
Version: 0.9.5
Author: YUIMA Project Team
Maintainer: Emanuele Guidotti <emanuele.guidotti@studenti.unimi.it>
Description: Provides a graphical user interface for the 'yuima' package.
License: GPL-2
Depends: R(>= 3.0.0)
Imports: DT (>= 0.2), shinyjs, shiny, shinydashboard, shinyBS, yuima, quantmod, sde, ggplot2
NeedsCompilation: no
Packaged: 2016-12-02 23:13:02 UTC; Emanuele
Repository: CRAN
Date/Publication: 2016-12-03 01:09:16

More information about yuimaGUI at CRAN
Permanent link

Package subscore updated to version 2.0 with previous version 1.3 dated 2016-08-17

Title: Computing Subscores in Classical Test Theory and Item Response Theory
Description: Functions for computing subscores for a test using different methods in both classical test theory (CTT) and item response theory (IRT). This package enables three sets of subscoring methods within the framework of CTT and IRT: Wainer's augmentation method, Haberman's three subscoring methods, and Yen's objective performance index (OPI). The package also includes the function to compute Proportional Reduction of Mean Squared Errors (PRMSEs) in Haberman's methods which are used to examine whether test subscores are of added value.
Author: Shenghai Dai [aut, cre], Xiaolin Wang [aut], Dubravka Svetina [aut]
Maintainer: Shenghai Dai <dais@indiana.edu>

Diff between subscore versions 1.3 dated 2016-08-17 and 2.0 dated 2016-12-02

 subscore-1.3/subscore/R/RegOnSub.r           |only
 subscore-1.3/subscore/R/RegOnTot.R           |only
 subscore-1.3/subscore/R/RegOnTotSub.R        |only
 subscore-1.3/subscore/R/Wainer.score.R       |only
 subscore-1.3/subscore/man/RegOnSub.Rd        |only
 subscore-1.3/subscore/man/RegOnTot.Rd        |only
 subscore-1.3/subscore/man/RegOnTotSub.Rd     |only
 subscore-1.3/subscore/man/Wainer.score.Rd    |only
 subscore-2.0/subscore/DESCRIPTION            |   20 ++++---
 subscore-2.0/subscore/MD5                    |   26 +++++----
 subscore-2.0/subscore/NAMESPACE              |   12 ++--
 subscore-2.0/subscore/R/CTTsub.R             |   74 ++++++++++++++-------------
 subscore-2.0/subscore/R/Yen.OPI.R            |only
 subscore-2.0/subscore/R/subscore.Wainer.R    |only
 subscore-2.0/subscore/R/subscore.s.r         |only
 subscore-2.0/subscore/R/subscore.sx.R        |only
 subscore-2.0/subscore/R/subscore.x.R         |only
 subscore-2.0/subscore/man/CTTsub.Rd          |   16 +++--
 subscore-2.0/subscore/man/Yen.OPI.Rd         |only
 subscore-2.0/subscore/man/subscore.Wainer.Rd |only
 subscore-2.0/subscore/man/subscore.s.Rd      |only
 subscore-2.0/subscore/man/subscore.sx.Rd     |only
 subscore-2.0/subscore/man/subscore.x.Rd      |only
 23 files changed, 82 insertions(+), 66 deletions(-)

More information about subscore at CRAN
Permanent link

Package RXKCD updated to version 1.7-7 with previous version 1.7-6 dated 2016-09-13

Title: Get XKCD Comic from R
Description: Visualize your favorite XKCD comic strip directly from R. XKCD web comic content is provided under the Creative Commons Attribution-NonCommercial 2.5 License.
Author: Paolo Sonego [aut, cph, cre], Mikko Korpela [ctb]
Maintainer: Paolo Sonego <paolo.sonego@gmail.com>

Diff between RXKCD versions 1.7-6 dated 2016-09-13 and 1.7-7 dated 2016-12-02

 DESCRIPTION |    8 ++++----
 MD5         |    6 +++---
 NAMESPACE   |    1 -
 R/getXKCD.R |   21 ++++-----------------
 4 files changed, 11 insertions(+), 25 deletions(-)

More information about RXKCD at CRAN
Permanent link

Package RSelenium updated to version 1.6.2 with previous version 1.5.0 dated 2016-11-23

Title: R Bindings for 'Selenium WebDriver'
Description: Provides a set of R bindings for the 'Selenium 2.0 WebDriver' (see <https://seleniumhq.github.io/docs/wd.html> for more information) using the 'JsonWireProtocol' (see <https://github.com/SeleniumHQ/selenium/wiki/JsonWireProtocol> for more information). 'Selenium 2.0 WebDriver' allows driving a web browser natively as a user would either locally or on a remote machine using the Selenium server it marks a leap forward in terms of web browser automation. Selenium automates web browsers (commonly referred to as browsers). Using RSelenium you can automate browsers locally or remotely.
Author: John Harrison [aut, cre] (R package RSelenium)
Maintainer: John Harrison <johndharrison0@gmail.com>

Diff between RSelenium versions 1.5.0 dated 2016-11-23 and 1.6.2 dated 2016-12-02

 RSelenium-1.5.0/RSelenium/NEWS                                                  |only
 RSelenium-1.6.2/RSelenium/DESCRIPTION                                           |   24 
 RSelenium-1.6.2/RSelenium/MD5                                                   |   67 -
 RSelenium-1.6.2/RSelenium/NAMESPACE                                             |    8 
 RSelenium-1.6.2/RSelenium/NEWS.md                                               |only
 RSelenium-1.6.2/RSelenium/R/errorHandler.R                                      |  175 +-
 RSelenium-1.6.2/RSelenium/R/remoteDriver.R                                      |  419 ++++--
 RSelenium-1.6.2/RSelenium/R/webElement.R                                        |  160 +-
 RSelenium-1.6.2/RSelenium/README.md                                             |    4 
 RSelenium-1.6.2/RSelenium/build/vignette.rds                                    |binary
 RSelenium-1.6.2/RSelenium/inst/doc/OCRUG-webinar.Rmd                            |    9 
 RSelenium-1.6.2/RSelenium/inst/doc/OCRUG-webinar.html                           |  324 ++--
 RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-basics.Rmd                         |  655 +++++-----
 RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-basics.html                        |  598 ++++-----
 RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-docker.Rmd                         |    2 
 RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-docker.html                        |    4 
 RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-headless.Rmd                       |   15 
 RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-headless.html                      |    8 
 RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-saucelabs.Rmd                      |   21 
 RSelenium-1.6.2/RSelenium/inst/doc/RSelenium-saucelabs.html                     |   14 
 RSelenium-1.6.2/RSelenium/inst/doc/shinytesting.Rmd                             |   19 
 RSelenium-1.6.2/RSelenium/inst/doc/shinytesting.html                            |  478 +++----
 RSelenium-1.6.2/RSelenium/man/errorHandler-class.Rd                             |    6 
 RSelenium-1.6.2/RSelenium/man/remoteDriver-class.Rd                             |    5 
 RSelenium-1.6.2/RSelenium/man/webElement-class.Rd                               |    6 
 RSelenium-1.6.2/RSelenium/tests/testthat/helper.R                               |    6 
 RSelenium-1.6.2/RSelenium/tests/testthat/test-alerts_tests.R                    |only
 RSelenium-1.6.2/RSelenium/tests/testthat/test-errorHandler.R                    |only
 RSelenium-1.6.2/RSelenium/tests/testthat/test-executing_javascript_tests.R      |   14 
 RSelenium-1.6.2/RSelenium/tests/testthat/test-misc_remoteDriver_methods_tests.R |   12 
 RSelenium-1.6.2/RSelenium/tests/testthat/test-misc_webElement_methods_tests.R   |only
 RSelenium-1.6.2/RSelenium/vignettes/OCRUG-webinar.Rmd                           |    9 
 RSelenium-1.6.2/RSelenium/vignettes/RSelenium-basics.Rmd                        |  655 +++++-----
 RSelenium-1.6.2/RSelenium/vignettes/RSelenium-docker.Rmd                        |    2 
 RSelenium-1.6.2/RSelenium/vignettes/RSelenium-headless.Rmd                      |   15 
 RSelenium-1.6.2/RSelenium/vignettes/RSelenium-saucelabs.Rmd                     |   21 
 RSelenium-1.6.2/RSelenium/vignettes/shinytesting.Rmd                            |   19 
 37 files changed, 2037 insertions(+), 1737 deletions(-)

More information about RSelenium at CRAN
Permanent link

Package plotmo updated to version 3.3.2 with previous version 3.3.1 dated 2016-11-24

Title: Plot a Model's Response and Residuals
Description: Plot model surfaces for a wide variety of models using partial dependence plots and other techniques. Also plot model residuals and other information on the model.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>

Diff between plotmo versions 3.3.1 dated 2016-11-24 and 3.3.2 dated 2016-12-02

 DESCRIPTION                          |   12 ++++-----
 MD5                                  |   36 ++++++++++++++++-------------
 NEWS                                 |   12 +++++++++
 R/c50.R                              |only
 R/gbm.R                              |   10 ++++++--
 R/grid.R                             |    8 ++++--
 R/plot_glmnet.R                      |    5 ++++
 R/plotmo.R                           |   43 ++++++++++++++++++++++++++++-------
 R/singles.R                          |   29 ++++++++++++++++-------
 R/w1.R                               |    3 ++
 inst/doc/modguide.pdf                |binary
 inst/doc/plotmo-notes.pdf            |binary
 inst/doc/plotres-notes.pdf           |binary
 inst/slowtests/make.bat              |    2 +
 inst/slowtests/test.c50.R            |only
 inst/slowtests/test.c50.Rout.save    |only
 inst/slowtests/test.c50.bat          |only
 inst/slowtests/test.gbm.Rout.save    |    1 
 inst/slowtests/test.glmnet.R         |   16 ++++++++++++-
 inst/slowtests/test.glmnet.Rout.save |   34 ++++++++++++++++++++++++++-
 man/plotmo.Rd                        |    6 ++--
 21 files changed, 168 insertions(+), 49 deletions(-)

More information about plotmo at CRAN
Permanent link

Package plm updated to version 1.6-5 with previous version 1.6-4 dated 2016-11-29

Title: Linear Models for Panel Data
Description: A set of estimators and tests for panel data.
Author: Yves Croissant [aut, cre], Giovanni Millo [aut], Kevin Tappe [aut], Ott Toomet [ctb], Christian Kleiber [ctb], Achim Zeileis [ctb], Arne Henningsen [ctb], Liviu Andronic [ctb], Nina Schoenfelder [ctb]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>

Diff between plm versions 1.6-4 dated 2016-11-29 and 1.6-5 dated 2016-12-02

 DESCRIPTION              |   20 +++---
 MD5                      |   36 ++++++------
 NEWS                     |   15 ++++-
 R/ercomp.R               |   19 ++++++
 R/ptest.R                |   20 +++++-
 inst/doc/plm.R           |  139 ++++++++++++++++++++++++-----------------------
 inst/doc/plm.pdf         |binary
 inst/doc/plm.rnw         |  115 ++++++++++++++++++++------------------
 man/Hedonic.Rd           |    2 
 man/make.pbalanced.Rd    |    2 
 man/make.pconsecutive.Rd |    2 
 man/pwaldtest.Rd         |    2 
 man/vcovBK.Rd            |    6 +-
 man/vcovDC.Rd            |    6 +-
 man/vcovHC.Rd            |    6 +-
 man/vcovNW.Rd            |    6 +-
 man/vcovSCC.Rd           |    6 +-
 vignettes/bibliojss.bib  |   31 ++++++++--
 vignettes/plm.rnw        |  115 ++++++++++++++++++++------------------
 19 files changed, 314 insertions(+), 234 deletions(-)

More information about plm at CRAN
Permanent link

Package pinfsc50 updated to version 1.1.0 with previous version 1.0.0 dated 2016-01-29

Title: Sequence ('FASTA'), Annotation ('GFF') and Variants ('VCF') for 17 Samples of 'P. Infestans" and 1 'P. Mirabilis'
Description: Genomic data for the plant pathogen "Phytophthora infestans." It includes a variant file ('VCF'), a sequence file ('FASTA') and an annotation file ('GFF'). This package is intended to be used as example data for packages that work with genomic data.
Author: Brian J. Knaus [cre, aut], Niklaus J. Grunwald [aut]
Maintainer: Brian J. Knaus <briank.lists@gmail.com>

Diff between pinfsc50 versions 1.0.0 dated 2016-01-29 and 1.1.0 dated 2016-12-02

 DESCRIPTION     |   16 ++++++++++------
 MD5             |   11 ++++++-----
 NAMESPACE       |    3 ++-
 R/pinfsc50.R    |   23 ++++++++++++-----------
 README.md       |    1 +
 inst/CITATION   |only
 man/pinfsc50.Rd |   24 +++++++++++++-----------
 7 files changed, 44 insertions(+), 34 deletions(-)

More information about pinfsc50 at CRAN
Permanent link

New package ggiraphExtra with initial version 0.1.0
Package: ggiraphExtra
Type: Package
Title: Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph'
Version: 0.1.0
Authors@R: person("Keon-Woong", "Moon", email = "cardiomoon@gmail.com", role = c("aut", "cre"))
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>
URL: https://github.com/cardiomoon/ggiraphExtra
Depends: R (>= 2.10)
Imports: ggplot2 (>= 2.2.0), ggiraph (>= 0.3.2), scales, reshape2, plyr, mycor, XML, grid, mgcv, mapproj, moonBook
Suggests: TH.data, maps, gcookbook, knitr, rmarkdown, testthat
Description: Collection of functions to enhance 'ggplot2' and 'ggiraph'. Provides functions for exploratory plots. All plot can be a 'static' plot or an 'interactive' plot using 'ggiraph'.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-02 23:40:11 UTC; cardiomoon
Author: Keon-Woong Moon [aut, cre]
Repository: CRAN
Date/Publication: 2016-12-03 01:11:47

More information about ggiraphExtra at CRAN
Permanent link

Package extremefit updated to version 0.2.0 with previous version 0.1.3 dated 2016-11-07

Title: Estimation of Extreme Conditional Quantiles and Probabilities
Description: Extreme value theory, nonparametric kernel estimation, tail conditional probabilities, extreme conditional quantile, adaptive estimation, quantile regression, survival probabilities.
Author: Gilles Durrieu, Ion Grama, Kevin Jaunatre, Quang-Khoai Pham, Jean-Marie Tricot
Maintainer: Kevin Jaunatre <kevin.jaunatre@univ-ubs.fr>

Diff between extremefit versions 0.1.3 dated 2016-11-07 and 0.2.0 dated 2016-12-02

 DESCRIPTION               |    6 -
 MD5                       |   26 ++---
 NAMESPACE                 |    1 
 R/PackageOxygen.R         |  200 +++++++++++++++++++++++++++-------------------
 man/CriticalValue.Rd      |    2 
 man/Gaussian.kernel.Rd    |   12 +-
 man/LoadCurve.Rd          |   19 ++--
 man/TruncGauss.kernel.Rd  |    2 
 man/dataOyster.Rd         |   50 ++++++-----
 man/dataWind.Rd           |   80 ++----------------
 man/hill.ts.Rd            |    9 ++
 man/predict.hill.Rd       |    9 --
 man/predict.hill.adapt.Rd |   21 ++--
 man/predict.hill.ts.Rd    |   43 ++++-----
 14 files changed, 231 insertions(+), 249 deletions(-)

More information about extremefit at CRAN
Permanent link

New package EFAutilities with initial version 0.1.0
Package: EFAutilities
Type: Package
Title: Utility Functions for Exploratory Factor Analysis
Version: 0.1.0
Date: 2016-11-27
Author: Guangjian Zhang, Ge Jiang, Minami Hattori, Lauren Trichtinger
Maintainer: Guangjian Zhang <gzhang3@nd.edu>
Depends: R (>= 2.10)
Description: A number of utility function for exploratory factor analysis are included in this package. In particular, it computes standard errors for parameter estimates and factor correlations under a variety of conditions.
License: GPL-2
LazyLoad: yes
Imports: GPArotation, mvtnorm
Packaged: 2016-12-02 21:54:30 UTC; ltrichti
RoxygenNote: 5.0.1
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-12-03 01:11:01

More information about EFAutilities at CRAN
Permanent link

New package BNPMIXcluster with initial version 0.1.0
Package: BNPMIXcluster
Type: Package
Title: Bayesian Nonparametric Model for Clustering with Mixed Scale Variables
Version: 0.1.0
Authors@R: c(person("Christian", "Carmona", role = c("aut", "cre"), email = "carmona@stats.ox.ac.uk"), person("Luis", "Nieto-Barajas", role = "aut", email = " lnieto@itam.mx"), person("Antonio", "Canale", role = "ctb", email = "antonio.canale@unito.it") )
Description: Bayesian nonparametric approach for clustering that is capable to combine different types of variables (continuous, ordinal and nominal) and also accommodates for different sampling probabilities in a complex survey design. The model is based on a location mixture model with a Poisson-Dirichlet process prior on the location parameters of the associated latent variables. The package performs the clustering model described in Carmona, C., Nieto-Barajas, L. E., Canale, A. (2016) <http://arxiv.org/abs/1612.00083>.
License: GPL
LazyData: TRUE
Depends: R (>= 2.10)
Imports: matrixcalc, truncnorm, mvtnorm, plyr, MASS
RoxygenNote: 5.0.1
Suggests: scatterplot3d
NeedsCompilation: no
Packaged: 2016-12-02 11:54:42 UTC; Chris
Author: Christian Carmona [aut, cre], Luis Nieto-Barajas [aut], Antonio Canale [ctb]
Maintainer: Christian Carmona <carmona@stats.ox.ac.uk>
Repository: CRAN
Date/Publication: 2016-12-03 01:26:20

More information about BNPMIXcluster at CRAN
Permanent link

New package AMModels with initial version 0.1
Package: AMModels
Type: Package
Title: Adaptive Management Model Manager
Version: 0.1
Date: 2016-12-01
Author: Therese Donovan <tdonovan@uvm.edu>, Jon Katz <jonkatz4@gmail.com>
Maintainer: Jon Katz <jonkatz4@gmail.com>
Description: Helps enable adaptive management by codifying knowledge in the form of models generated from numerous analyses and data sets. Facilitates this process by storing all models and data sets in a single object that can be updated and saved, thus tracking changes in knowledge through time. A shiny application called AM Model Manager (modelMgr()) enables the use of these functions via a GUI.
License: GPL-3
Copyright: This software is in the public domain because it contains materials that originally came from the United States Geological Survey, an agency of the United States Department of Interior. For more information, see the official USGS copyright policy at http://www.usgs.gov/visual-id/ credit_usgs.html#copyright. This software is in the public domain because it contains materials that originally came from the U.S. Geological Survey, an agency of the United States Department of Interior. Although this software program has been used by the U.S. Geological Survey (USGS), no warranty, expressed or implied, is made by the USGS or the U.S. Government as to the accuracy and functioning of the program and related program material nor shall the fact of distribution constitute any such warranty, and no responsibility is assumed by the USGS in connection therewith. This software is provided "AS IS."
Encoding: UTF-8
Imports: methods
Suggests: shiny, shinyBS, knitr, unmarked, AICcmodavg
RoxygenNote: 5.0.1
Collate: 'AMModels-package.R' 'amData.R' 'amModel.R' 'amModelLib.R' 'classes.R' 'getAMModelLib.R' 'getters.R' 'insertAMModelLib.R' 'ls.R' 'metaSummary.R' 'methods-amModel.R' 'methods-amModelLib.R' 'modelMgr.R' 'rmModelsData.R' 'simCovariate.R'
NeedsCompilation: no
Packaged: 2016-12-02 17:19:46 UTC; jon
Repository: CRAN
Date/Publication: 2016-12-03 01:09:17

More information about AMModels at CRAN
Permanent link

Package sdm updated to version 1.0-32 with previous version 1.0-28 dated 2016-10-16

Title: Species Distribution Modelling
Description: An extensible R framework for developing species distribution models using individual and community-based approaches, generate ensembles of models, evaluate the models, and predict species potential distributions in space and time.
Author: Babak Naimi, Miguel B. Araujo
Maintainer: Babak Naimi <naimi.b@gmail.com>

Diff between sdm versions 1.0-28 dated 2016-10-16 and 1.0-32 dated 2016-12-02

 DESCRIPTION                     |   12 ++--
 MD5                             |   31 +++++-----
 NAMESPACE                       |    4 -
 R/AAAClasses.R                  |   20 +++++-
 R/bioclim.R                     |only
 R/modelFrame.R                  |   43 ++++++++++----
 R/predict.R                     |  115 ++++++++++++++++++++++++++--------------
 R/sdmData.R                     |   18 +++---
 R/sdmMethods.R                  |    8 +-
 R/show.R                        |   36 ++++++++----
 R/zzz.R                         |    1 
 build/vignette.rds              |binary
 inst/doc/quick_sdm.Rmd          |   34 +++++++++++
 inst/doc/quick_sdm.html         |   84 ++++++++++++++++++++---------
 inst/methods/sdm/bioclim.R      |only
 inst/methods/sdm/bioclimDismo.R |only
 inst/methods/sdm/maxent.R       |    6 +-
 vignettes/quick_sdm.Rmd         |   34 +++++++++++
 18 files changed, 317 insertions(+), 129 deletions(-)

More information about sdm at CRAN
Permanent link

Package rtypeform updated to version 0.2.0 with previous version 0.1.1 dated 2016-03-31

Title: Interface to 'typeform' Results
Description: An R interface to the 'typeform' <https://typeform.com> application program interface. Also provides functions for downloading your results.
Author: Colin Gillespie [aut, cre]
Maintainer: Colin Gillespie <csgillespie@gmail.com>

Diff between rtypeform versions 0.1.1 dated 2016-03-31 and 0.2.0 dated 2016-12-02

 DESCRIPTION                             |   11 ++---
 MD5                                     |   25 +++++++-----
 NAMESPACE                               |    5 ++
 NEWS.md                                 |    5 ++
 R/check_api_response.R                  |only
 R/get_all_typeforms.R                   |   23 ++++++++---
 R/get_api.R                             |   10 ++++-
 R/get_results.R                         |   33 +++++++++++-----
 README.md                               |   64 +++++++++++++++++---------------
 man/get_all_typeforms.Rd                |    5 +-
 man/get_api.Rd                          |only
 man/get_results.Rd                      |   14 ++++---
 tests/testthat/test_get_all_typeforms.R |   10 ++++-
 tests/testthat/test_get_linux_time.R    |only
 tests/testthat/test_get_results.R       |   13 ++++--
 15 files changed, 140 insertions(+), 78 deletions(-)

More information about rtypeform at CRAN
Permanent link

Package qfasar updated to version 1.1.1 with previous version 1.1.0 dated 2016-10-25

Title: Quantitative Fatty Acid Signature Analysis in R
Description: An implementation of Quantitative Fatty Acid Signature Analysis (QFASA) in R. QFASA is a method of estimating the diet composition of predators. The fundamental unit of information in QFASA is a fatty acid signature (signature), which is a vector of proportions describing the composition of fatty acids within lipids. Signature data from at least one predator and from samples of all potential prey types are required. Calibration coefficients, which adjust for the differential metabolism of individual fatty acids by predators, are also required. Given those data inputs, a predator signature is modeled as a mixture of prey signatures and its diet estimate is obtained as the mixture that minimizes a measure of distance between the observed and modeled signatures. A variety of estimation options and simulation capabilities are implemented. Please refer to the vignette for additional details and references.
Author: Jeffrey F. Bromaghin [aut, cre]
Maintainer: Jeffrey F. Bromaghin <jbromaghin@usgs.gov>

Diff between qfasar versions 1.1.0 dated 2016-10-25 and 1.1.1 dated 2016-12-02

 DESCRIPTION          |    8 ++++----
 MD5                  |    6 +++---
 R/est_diet.R         |    2 +-
 inst/doc/qfasar.html |    4 ++--
 4 files changed, 10 insertions(+), 10 deletions(-)

More information about qfasar at CRAN
Permanent link

Package pinbasic updated to version 0.2.0 with previous version 0.1.0 dated 2016-10-24

Title: Fast and Stable Estimation of the Probability of Informed Trading (PIN)
Description: Utilities for fast and stable estimation of the probability of informed trading (PIN) in the model introduced by Easley et al. (2002) <DOI:10.1111/1540-6261.00493> are implemented. Since the basic model developed by Easley et al. (1996) <DOI:10.1111/j.1540-6261.1996.tb04074.x> is nested in the former due to equating the intensity of uninformed buys and sells, functionalities can also be applied to this simpler model structure, if needed.
Author: Andreas Recktenwald [aut, cre]
Maintainer: Andreas Recktenwald <a.recktenwald@mx.uni-saarland.de>

Diff between pinbasic versions 0.1.0 dated 2016-10-24 and 0.2.0 dated 2016-12-02

 DESCRIPTION         |   12 ++++---
 MD5                 |   77 +++++++++++++++++++++++++++++++++-----------
 NAMESPACE           |    6 +++
 NEWS                |only
 NEWS.md             |only
 R/initialCAR.R      |   55 +++++++++++---------------------
 R/pin_calc.R        |    4 +-
 R/pin_confint.R     |only
 R/pin_est.R         |   27 +++++++++------
 R/pin_ll_CAR.R      |    6 +--
 R/pin_max.R         |   89 +++++++++++++++++++++++++++++++++++++++++++---------
 R/pinbasic.R        |    9 +++--
 R/qpin_plot.R       |   44 +++++++++++++++++--------
 R/quarterly_pin.R   |   40 ++++++++++++-----------
 R/simulate_data.R   |only
 R/summary.R         |   13 ++++---
 build/partial.rdb   |binary
 build/vignette.rds  |only
 inst                |only
 man/initial_vals.Rd |   19 ++---------
 man/pin_calc.Rd     |    2 -
 man/pin_confint.Rd  |only
 man/pin_est.Rd      |   16 +++++++--
 man/pin_est_core.Rd |   48 ++++++++++++++++++++++------
 man/pin_ll.Rd       |    4 +-
 man/pinbasic.Rd     |    7 ++--
 man/qpin.Rd         |   27 ++++++++++-----
 man/qpin_plot.Rd    |    7 ++--
 man/simulateBS.Rd   |only
 vignettes           |only
 30 files changed, 340 insertions(+), 172 deletions(-)

More information about pinbasic at CRAN
Permanent link

Package nlstimedist updated to version 1.0.4 with previous version 1.0.1 dated 2016-09-12

Title: Non-Linear Model Fitting of Time Distribution of Biological Phenomena
Description: Fit biologically meaningful distribution functions to time-sequence data (phenology), estimate parameters to draw the cumulative distribution function and probability density function and calculate standard statistical moments and percentiles.
Author: Nathan Eastwood [aut, cre], Miguel Franco [ctb], Paul Ramsay [ctb], Nicola Steer [ctb]
Maintainer: Nathan Eastwood <nathan.eastwood@icloud.com>

Diff between nlstimedist versions 1.0.1 dated 2016-09-12 and 1.0.4 dated 2016-12-02

 DESCRIPTION        |   10 ++--
 MD5                |    8 +--
 R/plots.R          |    6 +-
 README.md          |  126 ++++++++++++++++++++++++++++++++++++++++++++++++-----
 build/vignette.rds |binary
 5 files changed, 127 insertions(+), 23 deletions(-)

More information about nlstimedist at CRAN
Permanent link

Package MHTdiscrete updated to version 0.1.2 with previous version 0.1.1 dated 2016-10-27

Title: Multiple Hypotheses Testing for Discrete Data
Description: A Comprehensive tool for almost all existing multiple testing methods for discrete data. The package also provides some novel multiple testing procedures controlling FWER/FDR for discrete data. Given discrete p-values and their domains, the [method].p.adjust function returns adjusted p-values, which can be used to compare with the nominal significant level alpha and make decisions.
Author: Yalin Zhu, Wenge Guo
Maintainer: Yalin Zhu <yalin.zhu@outlook.com>

Diff between MHTdiscrete versions 0.1.1 dated 2016-10-27 and 0.1.2 dated 2016-12-02

 DESCRIPTION             |   12 ++++++------
 MD5                     |   47 ++++++++++++++++++++++++-----------------------
 NAMESPACE               |    1 +
 R/FDRSD.R               |    3 ++-
 R/FDRSU.R               |   12 ++++++++----
 R/FWERSD.R              |    6 ++++--
 R/FWERSS.R              |   39 +++++++++++++++++++++++++++++++++++----
 R/FWERSU.R              |    7 ++++---
 R/MHTdiscrete.R         |   33 +++++++++++++++++++++++++++++++++
 R/Pval.R                |    4 ++--
 man/GTBH.p.adjust.Rd    |    5 ++++-
 man/GTBY.p.adjust.Rd    |    5 ++++-
 man/MBH.p.adjust.Rd     |    5 ++++-
 man/MBL.p.adjust.Rd     |    5 ++++-
 man/MBY.p.adjust.Rd     |    5 ++++-
 man/MBonf.p.adjust.Rd   |    5 ++++-
 man/MHTdiscrete.Rd      |   33 +++++++++++++++++++++++++++++++++
 man/MHoch.p.adjust.Rd   |    5 ++++-
 man/MHolm.p.adjust.Rd   |    5 ++++-
 man/MixBonf.p.adjust.Rd |only
 man/Roth.p.adjust.Rd    |    5 ++++-
 man/Sidak.p.adjust.Rd   |    5 ++++-
 man/TH.p.adjust.Rd      |    5 ++++-
 man/Tarone.p.adjust.Rd  |    7 +++++--
 man/getPval.Rd          |    4 ++--
 25 files changed, 203 insertions(+), 60 deletions(-)

More information about MHTdiscrete at CRAN
Permanent link

Package ecm updated to version 0.2.0 with previous version 0.1.0 dated 2016-10-21

Title: Build Error Correction Models
Description: Functions for easy building of error correction models (ECM) for time series regression.
Author: Gaurav Bansal
Maintainer: Gaurav Bansal <gaurbans@gmail.com>

Diff between ecm versions 0.1.0 dated 2016-10-21 and 0.2.0 dated 2016-12-02

 DESCRIPTION    |    6 +++---
 MD5            |    8 ++++----
 R/ecmback.r    |   52 ++++++++++++++++++++++++++++++----------------------
 R/ecmpredict.r |   23 ++++++++++++-----------
 man/ecmback.Rd |    4 +++-
 5 files changed, 52 insertions(+), 41 deletions(-)

More information about ecm at CRAN
Permanent link

Package cshapes updated to version 0.6 with previous version 0.5-1 dated 2015-10-30

Title: The CShapes Dataset and Utilities
Description: Package for CShapes, a GIS dataset of country boundaries (1946-today). Includes functions for data extraction and the computation of distance matrices and -lists.
Author: Nils B. Weidmann <nils.weidmann@uni-konstanz.de>, Kristian Skrede Gleditsch <ksg@essex.ac.uk>
Maintainer: Nils B. Weidmann <nils.weidmann@uni-konstanz.de>

Diff between cshapes versions 0.5-1 dated 2015-10-30 and 0.6 dated 2016-12-02

 ChangeLog                                    |   16 +++++
 DESCRIPTION                                  |   12 ++--
 MD5                                          |   26 ++++-----
 R/cshp.R                                     |    2 
 R/distlist.R                                 |    2 
 R/distmatrix.R                               |    2 
 inst/shp/cshapes.dbf                         |binary
 inst/shp/cshapes.shp                         |binary
 inst/shp/cshapes.shx                         |binary
 inst/shp/cshapes_shapefile_documentation.txt |    8 +-
 man/cshapes-package.Rd                       |    4 -
 man/cshp.Rd                                  |   74 +++++++++++++--------------
 man/distlist.Rd                              |    2 
 man/distmatrix.Rd                            |    2 
 14 files changed, 83 insertions(+), 67 deletions(-)

More information about cshapes at CRAN
Permanent link

Package clipr updated to version 0.3.1 with previous version 0.3.0 dated 2016-11-19

Title: Read and Write from the System Clipboard
Description: Simple utility functions to read from and write to the Windows, OS X, and X11 clipboards.
Author: Matthew Lincoln [aut, cre], Louis Maddox [ctb], Steve Simpson [ctb], Jennifer Bryan [ctb]
Maintainer: Matthew Lincoln <matthew.d.lincoln@gmail.com>

Diff between clipr versions 0.3.0 dated 2016-11-19 and 0.3.1 dated 2016-12-02

 DESCRIPTION                  |    6 +++---
 MD5                          |    8 ++++----
 NEWS.md                      |    8 ++++++++
 R/linux_clipboard.R          |   24 ++++++++++++++++--------
 tests/testthat/test_render.R |   34 ++++++++++++++++++++++------------
 5 files changed, 53 insertions(+), 27 deletions(-)

More information about clipr at CRAN
Permanent link

Package bunchr updated to version 1.1.0 with previous version 1.0.1 dated 2016-11-09

Title: Analyze Bunching in a Kink or Notch Setting
Description: View and analyze data where bunching is expected. Estimate counter- factual distributions. For earnings data, estimate the compensated elasticity of earnings w.r.t. the net-of-tax rate.
Author: Itai Trilnick [aut, cre]
Maintainer: Itai Trilnick <itai.trilnick@berkeley.edu>

Diff between bunchr versions 1.0.1 dated 2016-11-09 and 1.1.0 dated 2016-12-02

 DESCRIPTION                        |    8 ++++----
 MD5                                |   23 ++++++++++++++---------
 NEWS.md                            |    6 ++++++
 R/bunchApp.R                       |only
 R/bunchr.R                         |    4 +++-
 build/vignette.rds                 |binary
 inst/bunchApp                      |only
 inst/doc/bunching_with_bunchr.Rmd  |    1 +
 inst/doc/bunching_with_bunchr.html |    5 +++--
 inst/doc/notch_estimation.html     |    4 ++--
 man/bunchApp.Rd                    |only
 man/bunchr.Rd                      |    4 +++-
 vignettes/bunching_with_bunchr.Rmd |    1 +
 13 files changed, 37 insertions(+), 19 deletions(-)

More information about bunchr at CRAN
Permanent link

Package BTLLasso updated to version 0.1-4 with previous version 0.1-3 dated 2016-11-22

Title: Modelling Heterogeneity in Paired Comparison Data
Description: Performs 'BTLLasso', a method to include different types of variables in paired comparison models and, therefore, to allow for heterogeneity between subjects. Variables can be subject-specific, object-specific and subject-object-specific and can have an influence on the attractiveness/strength of the objects. Suitable L1 penalty terms are used to cluster certain effects and to reduce the complexity of the models.
Author: Gunther Schauberger
Maintainer: Gunther Schauberger <gunther@stat.uni-muenchen.de>

Diff between BTLLasso versions 0.1-3 dated 2016-11-22 and 0.1-4 dated 2016-12-02

 DESCRIPTION              |    8 ++++----
 MD5                      |   36 ++++++++++++++++++------------------
 NAMESPACE                |    2 +-
 R/BTLLasso-package.R     |    4 ++--
 R/RcppExports.R          |    2 +-
 R/ci.BTLLasso.R          |   37 ++++++++++++++++++++++++++++++-------
 R/design.BTLLasso.R      |   30 +++++++++++++++++++++++-------
 R/paths.R                |    9 ++++++++-
 R/print.cv.BTLLasso.R    |   19 +++++++++++++++++--
 R/singlepaths.R          |   28 ++++++++++++++++++++--------
 data/Buli1516.RData      |binary
 data/GLES.RData          |binary
 data/GLESsmall.RData     |binary
 man/GLES.Rd              |    4 ++--
 man/ci.BTLLasso.Rd       |    9 ++++++---
 man/print.cv.BTLLasso.Rd |    5 ++++-
 man/singlepaths.Rd       |    7 +++++--
 src/RcppExports.cpp      |   22 +++++++++++-----------
 src/cppfunctions.cpp     |    8 ++++----
 19 files changed, 156 insertions(+), 74 deletions(-)

More information about BTLLasso at CRAN
Permanent link

Package blockTools updated to version 0.6-3 with previous version 0.6-2 dated 2015-01-09

Title: Block, Assign, and Diagnose Potential Interference in Randomized Experiments
Description: Blocks units into experimental blocks, with one unit per treatment condition, by creating a measure of multivariate distance between all possible pairs of units. Maximum, minimum, or an allowable range of differences between units on one variable can be set. Randomly assign units to treatment conditions. Diagnose potential interference between units assigned to different treatment conditions. Write outputs to .tex and .csv files.
Author: Ryan T. Moore and Keith Schnakenberg
Maintainer: Ryan T. Moore <rtm@american.edu>

Diff between blockTools versions 0.6-2 dated 2015-01-09 and 0.6-3 dated 2016-12-02

 CHANGELOG                 |    8 +
 DESCRIPTION               |   10 -
 LICENSE                   |    2 
 MD5                       |   20 +--
 NAMESPACE                 |    4 
 R/assg2xBalance.R         |   11 +-
 R/block.R                 |   15 ++
 R/naive.R                 |    2 
 man/block.Rd              |    5 
 man/blockTools-package.Rd |    7 -
 src/util.c                |  232 +++++++++++++++++++++++-----------------------
 11 files changed, 170 insertions(+), 146 deletions(-)

More information about blockTools at CRAN
Permanent link

New package bea.R with initial version 1.0.0
Package: bea.R
Title: Bureau of Economic Analysis API
Version: 1.0.0
Authors@R: c(person("Andrea", "Julca", role = c("aut", "cre"), email = c("Andrea.Julca@bea.gov")), person("Jeff", "Chen", role = "ctb"), person("Walt", "Kampas", role = "ctb"))
Author: Andrea Julca [aut, cre], Jeff Chen [ctb], Walt Kampas [ctb]
Depends: R (>= 3.2.1), data.table
Imports: httr, DT, shiny, jsonlite, googleVis, shinydashboard, ggplot2, stringr, chron, gtable, scales, htmltools, httpuv, xtable, stringi, magrittr, htmlwidgets, Rcpp, munsell, colorspace, plyr, yaml
Description: Provides an R interface for the Bureau of Economic Analysis (BEA) API (see <http://www.bea.gov/API/bea_web_service_api_user_guide.htm> for more information) that serves two core purposes - 1. To Extract/Transform/Load data [beaGet()] from the BEA API as R-friendly formats in the user's work space [transformation done by default in beaGet() can be modified using optional parameters; see, too, bea2List(), bea2Tab()]. 2. To enable the search of descriptive meta data [beaSearch()]. Other features of the library exist mainly as intermediate methods or are in early stages of development. Important Note - You must have an API key to use this library. Register for a key at <http://www.bea.gov/API/signup/index.cfm> .
URL: https://github.com/us-bea/beaR
License: CC0
LazyData: no
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-02 21:56:55 UTC; ODACJ1
Maintainer: Andrea Julca <Andrea.Julca@bea.gov>
Repository: CRAN
Date/Publication: 2016-12-02 23:20:28

More information about bea.R at CRAN
Permanent link

Package bayesLife updated to version 3.0-3 with previous version 3.0-1 dated 2016-11-21

Title: Bayesian Projection of Life Expectancy
Description: Making probabilistic projections of life expectancy for all countries of the world, using a Bayesian hierarchical model <doi:10.1007/s13524-012-0193-x>.
Author: Hana Sevcikova, Adrian Raftery, Jennifer Chunn
Maintainer: Hana Sevcikova <hanas@uw.edu>

Diff between bayesLife versions 3.0-1 dated 2016-11-21 and 3.0-3 dated 2016-12-02

 bayesLife-3.0-1/bayesLife/inst/ex-data/last.dump.rda  |only
 bayesLife-3.0-3/bayesLife/ChangeLog                   |   10 ++
 bayesLife-3.0-3/bayesLife/DESCRIPTION                 |   10 +-
 bayesLife-3.0-3/bayesLife/MD5                         |   15 ++--
 bayesLife-3.0-3/bayesLife/NAMESPACE                   |    3 
 bayesLife-3.0-3/bayesLife/R/plot_functions.R          |   61 +++++++++++++++---
 bayesLife-3.0-3/bayesLife/man/bayesLife-package.Rd    |    4 -
 bayesLife-3.0-3/bayesLife/man/e0.DLcurve.plot.Rd      |   13 +++
 bayesLife-3.0-3/bayesLife/man/e0.trajectories.plot.Rd |   12 ++-
 9 files changed, 98 insertions(+), 30 deletions(-)

More information about bayesLife at CRAN
Permanent link

Package ALSM updated to version 0.1.3 with previous version 0.1.2 dated 2016-11-22

Title: Companion to Applied Linear Statistical Models
Description: Functions and Data set presented in Applied Linear Statistical Models Fifth Edition (Chapters 1-9 and 16-18), Michael H. Kutner; Christopher J. Nachtsheim; John Neter; William Li, 2005. (ISBN-10: 0071122214, ISBN-13: 978-0071122214) that do not exist in R, are gathered in this package. The whole book will be covered in the next versions.
Author: Ali Ghanbari <a.ghanbari541@gmail.com>
Maintainer: Ali Ghanbari <a.ghanbari541@gmail.com>

Diff between ALSM versions 0.1.2 dated 2016-11-22 and 0.1.3 dated 2016-12-02

 DESCRIPTION         |    6 ++--
 MD5                 |   10 ++++----
 NAMESPACE           |    3 ++
 R/16_17_18_oneway.R |   65 +++++++++++++++++++++++++++++++++-------------------
 R/6_ci.reg.R        |    4 +--
 man/oneway.Rd       |    5 +++-
 6 files changed, 59 insertions(+), 34 deletions(-)

More information about ALSM at CRAN
Permanent link

Package clue updated to version 0.3-52 with previous version 0.3-51 dated 2016-01-06

Title: Cluster Ensembles
Description: CLUster Ensembles.
Author: Kurt Hornik [aut, cre], Walter Böhm [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

Diff between clue versions 0.3-51 dated 2016-01-06 and 0.3-52 dated 2016-12-02

 DESCRIPTION                  |    6 -
 MD5                          |   65 +++++++++---------
 build/partial.rdb            |only
 build/vignette.rds           |binary
 data/CKME.rda                |binary
 data/Cassini.rda             |binary
 data/GVME.rda                |binary
 data/GVME_Consensus.rda      |binary
 data/Kinship82.rda           |binary
 data/Kinship82_Consensus.rda |binary
 data/Phonemes.rda            |binary
 inst/doc/clue.Rnw            |    2 
 inst/doc/clue.pdf            |binary
 man/GVME.Rd                  |    1 
 man/GVME_Consensus.Rd        |    4 -
 man/Kinship82.Rd             |    3 
 man/Kinship82_Consensus.Rd   |    1 
 man/Phonemes.Rd              |    1 
 man/cl_agreement.Rd          |   13 ++-
 man/cl_bag.Rd                |    1 
 man/cl_consensus.Rd          |    5 +
 man/cl_dissimilarity.Rd      |   15 +++-
 man/cl_pam.Rd                |    1 
 man/cl_pclust.Rd             |    1 
 man/cl_validity.Rd           |    1 
 man/kmedoids.Rd              |    1 
 man/l1_fit_ultrametric.Rd    |    2 
 man/lattice.Rd               |    1 
 man/ls_fit_addtree.Rd        |    2 
 man/ls_fit_ultrametric.Rd    |    4 +
 man/partition.Rd             |   12 +--
 man/sumt.Rd                  |    6 +
 vignettes/clue.Rnw           |    2 
 vignettes/cluster.bib        |  154 ++++++++++++++++++++++++++++++++++++-------
 34 files changed, 228 insertions(+), 76 deletions(-)

More information about clue at CRAN
Permanent link

New package vkR with initial version 0.1
Package: vkR
Type: Package
Title: Access to VK API via R
Description: Provides an interface to the VK API <https://vk.com/dev/methods>. VK <https://vk.com/> is the largest European online social networking service, based in Russia.
Version: 0.1
Date: 2016-12-01
Authors@R: c( person("Dmitriy", "Sorokin", role = c("aut", "cre"), email = "dementiy@yandex.ru"), person("Anton", "Antonov", role = "ctb", email = "tonytonov@gmail.com"))
Maintainer: Dmitriy Sorokin <dementiy@yandex.ru>
URL: https://github.com/Dementiy/vkR
BugReports: https://github.com/Dementiy/vkR/issues
License: GPL-3
Encoding: UTF-8
Depends: R (>= 3.0.0)
Imports: graphics, httr, jsonlite, stats, utils, XML
Suggests: stringr, tm, plyr, dplyr, reshape2, jpeg, igraph, rgexf, httpuv
RoxygenNote: 5.0.1
Collate: 'auth.R' 'database.R' 'friends.R' 'groups.R' 'igraph_gefx_exporter.R' 'likes.R' 'messages.R' 'network.R' 'queries.R' 'status.R' 'search.R' 'users.R' 'utils.R' 'wall.R' 'vkR.R'
NeedsCompilation: no
Packaged: 2016-12-01 23:45:48 UTC; dementiy
Author: Dmitriy Sorokin [aut, cre], Anton Antonov [ctb]
Repository: CRAN
Date/Publication: 2016-12-02 10:46:29

More information about vkR at CRAN
Permanent link

New package scatterpie with initial version 0.0.5
Package: scatterpie
Title: Scatterpie Plot
Version: 0.0.5
Authors@R: person("Guangchuang", "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "cre"))
Description: Creates scatterpie plots, especially useful for plotting pies on a map.
Depends: R (>= 3.3.0)
Imports: ggforce, ggplot2, tidyr, utils
Suggests: knitr, prettydoc, maps
VignetteBuilder: knitr
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-02 01:44:24 UTC; guangchuangyu
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-02 10:46:28

More information about scatterpie at CRAN
Permanent link

Package RMark updated to version 2.2.2 with previous version 2.2.0 dated 2016-06-23

Title: R Code for Mark Analysis
Description: An interface to the software package MARK that constructs input files for MARK and extracts the output. MARK was developed by Gary White and is freely available at <http://www.phidot.org/software/mark/downloads/> but is not open source.
Author: Jeff Laake <jeff.laake@noaa.gov> with code contributions from Eldar Rakhimberdiev, Ben Augustine and Daniel Turek, and example data and analysis from Bret Collier, Jay Rotella, David Pavlacky,Andrew Paul and Luke Eberhart- Phillips.
Maintainer: Jeff Laake <jefflaake@gmail.com>

Diff between RMark versions 2.2.0 dated 2016-06-23 and 2.2.2 dated 2016-12-02

 DESCRIPTION             |   12 ++++++------
 MD5                     |   42 +++++++++++++++++++++---------------------
 NEWS                    |   26 ++++++++++++++++++++++++++
 R/RMark-package.R       |   18 +++++++++++-------
 R/convert.inp.r         |    2 +-
 R/export.MARK.r         |    8 +++++++-
 R/export.model.r        |   17 +++++++++++++----
 R/extract.mark.output.R |   16 ++++++++--------
 R/get.link.R            |    2 +-
 R/get.real.R            |    4 ++--
 R/make.mark.model.R     |   34 +++++++++++++++++++++++++++-------
 R/mark.R                |    2 +-
 R/process.data.R        |   29 +++++++++++++++++++++++------
 R/zzz.R                 |    2 +-
 inst/models.txt         |    2 ++
 inst/parameters.txt     |   23 ++++++++++++++++-------
 man/ABeginnersGuide.Rd  |    4 ++--
 man/Burnham.Rd          |    2 +-
 man/LogitNormalMR.Rd    |    9 ++++++++-
 man/convert.inp.Rd      |    2 +-
 man/mark.Rd             |    2 +-
 man/process.data.Rd     |    4 +++-
 22 files changed, 182 insertions(+), 80 deletions(-)

More information about RMark at CRAN
Permanent link

Package rintrojs updated to version 0.1.2 with previous version 0.1.1 dated 2016-10-18

Title: Wrapper for the 'Intro.js' Library
Description: A wrapper for the 'Intro.js' library (For more info: <http://www.introjs.com>). This package makes it easy to include step-by-step introductions, and clickable hints in a 'Shiny' application. It supports both static introductions in the UI, and programmatic introductions from the server-side.
Author: Carl Ganz [aut, cre], Afshin Mehrabani [ctb, cph] (intro.js in javascript/introjs)
Maintainer: Carl Ganz <carlganz@gmail.com>

Diff between rintrojs versions 0.1.1 dated 2016-10-18 and 0.1.2 dated 2016-12-02

 DESCRIPTION      |    6 +++---
 MD5              |   13 +++++++------
 NEWS.md          |    4 ++++
 R/introjs.R      |   43 +++++++++++++++++++++++++++++++++----------
 README.md        |    2 +-
 man/introBox.Rd  |    4 ++--
 man/introjs.Rd   |   13 ++++---------
 man/introjsUI.Rd |only
 8 files changed, 54 insertions(+), 31 deletions(-)

More information about rintrojs at CRAN
Permanent link

Package ggfortify updated to version 0.3.0.0 with previous version 0.2.0 dated 2016-06-02

Title: Data Visualization Tools for Statistical Analysis Results
Description: Unified plotting tools for statistics commonly used, such as GLM, time series, PCA families, clustering and survival analysis. The package offers a single plotting interface for these analysis results and plots in a unified style using 'ggplot2'.
Author: Masaaki Horikoshi [aut, cre], Yuan Tang [aut, cph]
Maintainer: Masaaki Horikoshi <sinhrks@gmail.com>

Diff between ggfortify versions 0.2.0 dated 2016-06-02 and 0.3.0.0 dated 2016-12-02

 DESCRIPTION                        |   24 ++--
 MD5                                |  219 +++++++++++++++++++------------------
 NAMESPACE                          |   17 ++
 R/base_fortify_ts.R                |   12 +-
 R/fortify_basis.R                  |only
 R/fortify_raster.R                 |only
 R/fortify_stats.R                  |   17 --
 R/fortify_vars.R                   |    2 
 R/plotlib.R                        |   13 ++
 inst/CITATION                      |only
 inst/doc/basics.html               |   38 +++---
 inst/doc/intro_Chinese.html        |   82 ++++++-------
 inst/doc/plot_dist.html            |   10 -
 inst/doc/plot_lm.html              |   16 +-
 inst/doc/plot_map.html             |   14 +-
 inst/doc/plot_pca.html             |   42 +++----
 inst/doc/plot_surv.html            |   12 +-
 inst/doc/plot_ts.html              |   70 +++++------
 man/apply_facets.Rd                |    2 
 man/as_tibble.basis.Rd             |only
 man/autoplot.MSM.lm.Rd             |    2 
 man/autoplot.RasterCommon.Rd       |only
 man/autoplot.SpatialCommon.Rd      |    2 
 man/autoplot.aareg.Rd              |    2 
 man/autoplot.acf.Rd                |    2 
 man/autoplot.basis.Rd              |only
 man/autoplot.breakpoints.Rd        |    2 
 man/autoplot.cpt.Rd                |    2 
 man/autoplot.cv.glmnet.Rd          |    2 
 man/autoplot.density.Rd            |    2 
 man/autoplot.forecast.Rd           |    2 
 man/autoplot.ggmultiplot.Rd        |    2 
 man/autoplot.ggplot.Rd             |    2 
 man/autoplot.glmnet.Rd             |    2 
 man/autoplot.kmeans.Rd             |    2 
 man/autoplot.list.Rd               |    2 
 man/autoplot.lm.Rd                 |    2 
 man/autoplot.map.Rd                |    2 
 man/autoplot.matrix.Rd             |    2 
 man/autoplot.pca_common.Rd         |    2 
 man/autoplot.spec.Rd               |    2 
 man/autoplot.stepfun.Rd            |    2 
 man/autoplot.survfit.Rd            |    2 
 man/autoplot.ts.Rd                 |    2 
 man/autoplot.tsmodel.Rd            |    2 
 man/autoplot.varprd.Rd             |    2 
 man/cbind_wraps.Rd                 |    2 
 man/check_names.Rd                 |    2 
 man/confint.acf.Rd                 |    2 
 man/deprecate.warning.Rd           |    2 
 man/fitted.ar.Rd                   |    2 
 man/fortify.MSM.lm.Rd              |    2 
 man/fortify.RasterCommon.Rd        |only
 man/fortify.SpatialCommon.Rd       |    2 
 man/fortify.aareg.Rd               |    2 
 man/fortify.acf.Rd                 |    2 
 man/fortify.basis.Rd               |only
 man/fortify.cpt.Rd                 |    2 
 man/fortify.cv.glmnet.Rd           |    2 
 man/fortify.density.Rd             |    2 
 man/fortify.dist.Rd                |    2 
 man/fortify.ets.Rd                 |    2 
 man/fortify.factanal.Rd            |    2 
 man/fortify.forecast.Rd            |    2 
 man/fortify.glmnet.Rd              |    2 
 man/fortify.kmeans.Rd              |    2 
 man/fortify.lfda.Rd                |    2 
 man/fortify.list.Rd                |    2 
 man/fortify.matrix.Rd              |    2 
 man/fortify.prcomp.Rd              |    2 
 man/fortify.spec.Rd                |    2 
 man/fortify.stepfun.Rd             |    2 
 man/fortify.survfit.Rd             |    2 
 man/fortify.table.Rd               |    2 
 man/fortify.ts.Rd                  |    2 
 man/fortify.tsmodel.Rd             |    2 
 man/fortify.varprd.Rd              |    2 
 man/fortify_base.Rd                |    2 
 man/fortify_map.Rd                 |    2 
 man/geom_confint.Rd                |    2 
 man/geom_factory.Rd                |    2 
 man/get.dtindex.Rd                 |    2 
 man/get.dtindex.continuous.Rd      |    2 
 man/get.layout.Rd                  |    2 
 man/get_geom_function.Rd           |    2 
 man/ggbiplot.Rd                    |    2 
 man/ggcpgram.Rd                    |    2 
 man/ggdistribution.Rd              |    2 
 man/ggfortify.Rd                   |    2 
 man/ggfreqplot.Rd                  |    2 
 man/gglagplot.Rd                   |    2 
 man/ggmultiplot-class.Rd           |    2 
 man/ggtsdiag.Rd                    |    2 
 man/grid.draw.ggmultiplot.Rd       |only
 man/infer.Rd                       |    2 
 man/is.univariate.Rd               |    2 
 man/is_derived_from.Rd             |    2 
 man/plot_confint.Rd                |    2 
 man/plot_label.Rd                  |    2 
 man/plus-ggmultiplot-ANY-method.Rd |    2 
 man/post_autoplot.Rd               |    2 
 man/post_fortify.Rd                |    2 
 man/print-ggmultiplot-method.Rd    |    2 
 man/rbind_ts.Rd                    |    2 
 man/residuals.ar.Rd                |    2 
 man/show-ggmultiplot-method.Rd     |    2 
 man/support_autoplot.Rd            |    2 
 man/unscale.Rd                     |    2 
 tests/testthat/Rplots.pdf          |binary
 tests/testthat/test-basis.R        |only
 tests/testthat/test-forecast.R     |    2 
 tests/testthat/test-raster.R       |only
 tests/testthat/test-stats-lm.R     |    9 +
 tests/testthat/test-surv.R         |    7 -
 tests/testthat/test-ts.R           |   12 +-
 tests/testthat/test-vars.R         |   15 ++
 116 files changed, 432 insertions(+), 369 deletions(-)

More information about ggfortify at CRAN
Permanent link

New package FactoRizationMachines with initial version 0.1
Package: FactoRizationMachines
Type: Package
Title: Machine Learning with Higher-Order Factorization Machines
Version: 0.1
Date: 2016-12-01
Author: Julian Knoll
Maintainer: Julian Knoll <julian.knoll@th-nuernberg.de>
Description: Implementation of three machine learning approaches: Support Vector Machines (SVM) with a linear kernel, second-order Factorization Machines (FM), and higher-order Factorization Machines (HoFM).
License: CC BY-NC-ND 4.0
Imports: Rcpp (>= 0.12.1), methods, Matrix
LinkingTo: Rcpp
Suggests: MASS
NeedsCompilation: yes
Packaged: 2016-12-01 21:23:31 UTC; Administrator
Repository: CRAN
Date/Publication: 2016-12-02 10:46:20

More information about FactoRizationMachines at CRAN
Permanent link

New package ClimDown with initial version 1.0.2
Package: ClimDown
Version: 1.0.2
Date: 2016-12-01
Title: Climate Downscaling Library for Daily Climate Model Output
Authors@R: c(person("Alex Cannon", role = "aut", email = "acannon@uvic.ca"), person("James Hiebert", role = c("aut", "cre"), email = "hiebert@uvic.ca"), person("Arelia Werner", role = "aut", email = "wernera@uvic.ca"), person("Steven Sobie", role = "aut", email = "ssobie@uvic.ca"))
Imports: PCICt, udunits2, ncdf4, fields, foreach, seas, abind, stats
Suggests: RUnit
Encoding: UTF-8
Description: A suite of routines for downscaling coarse scale global climate model (GCM) output to a fine spatial resolution. Includes Bias-Corrected Spatial Downscaling (BCDS), Constructed Analogues (CA), Climate Imprint (CI), and Bias Correction/Constructed Analogues with Quantile mapping reordering (BCCAQ). Developed by the the Pacific Climate Impacts Consortium (PCIC), Victoria, British Columbia, Canada.
License: GPL-3
URL: https://www.r-project.org
LazyData: yes
BugReports: https://github.com/pacificclimate/ClimDown
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-02 00:54:49 UTC; james
Author: Alex Cannon [aut], James Hiebert [aut, cre], Arelia Werner [aut], Steven Sobie [aut]
Maintainer: James Hiebert <hiebert@uvic.ca>
Repository: CRAN
Date/Publication: 2016-12-02 10:46:19

More information about ClimDown at CRAN
Permanent link

Package car updated to version 2.1-4 with previous version 2.1-3 dated 2016-08-11

Title: Companion to Applied Regression
Description: Functions and Datasets to Accompany J. Fox and S. Weisberg, An R Companion to Applied Regression, Second Edition, Sage, 2011.
Author: John Fox [aut, cre], Sanford Weisberg [aut], Daniel Adler [ctb], Douglas Bates [ctb], Gabriel Baud-Bovy [ctb], Steve Ellison [ctb], David Firth [ctb], Michael Friendly [ctb], Gregor Gorjanc [ctb], Spencer Graves [ctb], Richard Heiberger [ctb], Rafael Laboissiere [ctb], Georges Monette [ctb], Duncan Murdoch [ctb], Henric Nilsson [ctb], Derek Ogle [ctb], Brian Ripley [ctb], William Venables [ctb], David Winsemius [ctb], Achim Zeileis [ctb], R-Core [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>

Diff between car versions 2.1-3 dated 2016-08-11 and 2.1-4 dated 2016-12-02

 DESCRIPTION                 |   17 ++-
 MD5                         |  151 +++++++++++++++++----------------
 NAMESPACE                   |   16 ++-
 NEWS                        |   16 +++
 R/Boxplot.R                 |   20 ++++
 R/RcppExports.R             |only
 R/adaptiveKernel.R          |only
 R/densityPlot.R             |   66 ++++++++++----
 R/powerTransform.R          |    9 +-
 R/powerTransformlmer.R      |only
 R/scatterplotSmoothers.R    |  116 ++++++++++++++-----------
 R/skewPower.R               |  198 ++++++++++++++++++++++++++++++++++----------
 R/spreadLevelPlot.R         |   13 ++
 build/vignette.rds          |binary
 data/AMSsurvey.rda          |binary
 data/Adler.rda              |binary
 data/Angell.rda             |binary
 data/Anscombe.rda           |binary
 data/Baumann.rda            |binary
 data/Bfox.rda               |binary
 data/Blackmore.rda          |binary
 data/Burt.rda               |binary
 data/CanPop.rda             |binary
 data/Chile.rda              |binary
 data/Chirot.rda             |binary
 data/Cowles.rda             |binary
 data/Davis.rda              |binary
 data/DavisThin.rda          |binary
 data/Depredations.rda       |binary
 data/Duncan.rda             |binary
 data/Ericksen.rda           |binary
 data/Florida.rda            |binary
 data/Freedman.rda           |binary
 data/Friendly.rda           |binary
 data/Ginzberg.rda           |binary
 data/Greene.rda             |binary
 data/Guyer.rda              |binary
 data/Hartnagel.rda          |binary
 data/Highway1.rda           |binary
 data/KosteckiDillon.rda     |binary
 data/Leinhardt.rda          |binary
 data/LoBD.rda               |binary
 data/Mandel.rda             |binary
 data/Migration.rda          |binary
 data/Moore.rda              |binary
 data/Mroz.rda               |binary
 data/OBrienKaiser.rda       |binary
 data/Ornstein.rda           |binary
 data/Pottery.rda            |binary
 data/Prestige.rda           |binary
 data/Quartet.rda            |binary
 data/Robey.rda              |binary
 data/SLID.rda               |binary
 data/Sahlins.rda            |binary
 data/Salaries.rda           |binary
 data/Soils.rda              |binary
 data/States.rda             |binary
 data/Transact.rda           |binary
 data/UN.rda                 |binary
 data/USPop.rda              |binary
 data/Vocab.rda              |binary
 data/WeightLoss.rda         |binary
 data/Womenlf.rda            |binary
 data/Wong.rda               |binary
 data/Wool.rda               |binary
 inst/doc/embedding.pdf      |binary
 man/Boxplot.Rd              |   18 +++-
 man/Highway1.Rd             |    8 -
 man/ScatterplotSmoothers.Rd |   19 ++--
 man/boxCox.Rd               |   10 +-
 man/car-package.Rd          |    9 +-
 man/densityPlot.Rd          |   69 +++++++++++----
 man/invResPlot.Rd           |    2 
 man/plot.powerTransform.Rd  |    4 
 man/powerTransform.Rd       |   41 ++++++---
 man/skewPower.Rd            |   67 +++++++-------
 man/spreadLevelPlot.Rd      |   11 ++
 man/testTransform.Rd        |   11 ++
 78 files changed, 591 insertions(+), 300 deletions(-)

More information about car at CRAN
Permanent link

Package wppExplorer updated to version 2.0-1 with previous version 2.0-0 dated 2016-11-01

Title: Explorer of World Population Prospects
Description: Explore data in the 'wpp2015' (or 2012, 2010) package using a 'shiny' interface.
Author: Hana Sevcikova <hanas@uw.edu>
Maintainer: Hana Sevcikova <hanas@uw.edu>

Diff between wppExplorer versions 2.0-0 dated 2016-11-01 and 2.0-1 dated 2016-12-02

 ChangeLog                  |    4 ++++
 DESCRIPTION                |    8 ++++----
 MD5                        |    8 ++++----
 inst/explore/server.R      |    2 +-
 man/wppExplorer-package.Rd |    4 ++--
 5 files changed, 15 insertions(+), 11 deletions(-)

More information about wppExplorer at CRAN
Permanent link

Package tempR updated to version 0.9.9.8 with previous version 0.9.9.7 dated 2016-06-28

Title: Temporal Sensory Data Analysis
Description: Analysis and visualization of data from temporal sensory methods, including for temporal check-all-that-apply (TCATA) and temporal dominance of sensations (TDS).
Author: J. C. Castura [aut, cre]
Maintainer: J. C. Castura <jcastura@compusense.com>

Diff between tempR versions 0.9.9.7 dated 2016-06-28 and 0.9.9.8 dated 2016-12-02

 DESCRIPTION                  |    8 -
 MD5                          |   36 ++--
 NAMESPACE                    |    4 
 R/tcata.R                    |  328 +++++++++++++++++++++++++++++++------------
 R/tds.R                      |   43 +++--
 data/bars.rda                |binary
 data/ojtcata.rda             |only
 data/ojtds.rda               |only
 data/syrah.rda               |binary
 man/bootstrap.band.Rd        |only
 man/count.selections.Rd      |only
 man/fill.gaps.Rd             |   14 -
 man/get.decluttered.Rd       |only
 man/get.differences.Rd       |   12 -
 man/get.mat.diff.sign.Rd     |   14 -
 man/get.significance.diff.Rd |   12 -
 man/get.times.Rd             |   13 +
 man/make.palettes.Rd         |only
 man/ojtcata.Rd               |only
 man/ojtds.Rd                 |only
 man/plot_pca.trajectories.Rd |    7 
 man/std.time.Rd              |    2 
 man/tcata.line.plot.Rd       |   23 +++
 23 files changed, 356 insertions(+), 160 deletions(-)

More information about tempR at CRAN
Permanent link

Package glinternet updated to version 1.0.2 with previous version 1.0.1 dated 2016-11-14

Title: Learning Interactions via Hierarchical Group-Lasso Regularization
Description: Group-Lasso INTERaction-NET. Fits linear pairwise-interaction models that satisfy strong hierarchy: if an interaction coefficient is estimated to be nonzero, then its two associated main effects also have nonzero estimated coefficients. Accommodates categorical variables (factors) with arbitrary numbers of levels, continuous variables, and combinations thereof. Implements the machinery described in the paper "Learning interactions via hierarchical group-lasso regularization" (JCGS 2015, Volume 24, Issue 3). Michael Lim & Trevor Hastie (2015) <DOI:10.1080/10618600.2014.938812>.
Author: Michael Lim, Trevor Hastie
Maintainer: Michael Lim <michael626@gmail.com>

Diff between glinternet versions 1.0.1 dated 2016-11-14 and 1.0.2 dated 2016-12-02

 DESCRIPTION     |    8 +++----
 MD5             |    8 +++----
 R/group_lasso.r |    6 ++---
 R/standardize.r |    2 -
 src/fista.c     |   63 +++++++++++++++++++++++++++++++-------------------------
 5 files changed, 47 insertions(+), 40 deletions(-)

More information about glinternet at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.