Wed, 14 Dec 2016

New package RpeakChrom with initial version 0.1.0
Package: RpeakChrom
Type: Package
Title: Tools for Chromatographic Column Characterization and Modelling Chromatographic Peak
Version: 0.1.0
Author: Manuel David Peris Diaz, Maria Isabel Alcoriza Balaguer
Depends: R (>= 2.10.1), ggplot2, minpack.lm, pracma, ptw
Maintainer: Manuel David Peris Diaz <madape@alumni.uv.es>
Description: The quantitative measurement and detection of molecules in HPLC should be carried out by an accurate description of chromatographic peaks. In this package non-linear fitting using a modified Gaussian model with a parabolic variance (PVMG) has been implemented to obtain the retention time and height at the peak maximum. This package also includes the traditional Van Deemter approach and two alternatives approaches to characterize chromatographic column.
License: GPL-2
LazyData: TRUE
NeedsCompilation: no
Packaged: 2016-12-14 19:47:02 UTC; maribel
Repository: CRAN
Date/Publication: 2016-12-14 23:50:18

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Package redland updated to version 1.0.17-9 with previous version 1.0.17-8 dated 2016-04-26

Title: RDF Library Bindings in R
Description: Provides methods to parse, query and serialize information stored in the Resource Description Framework (RDF). RDF is described at <http://www.w3.org/TR/rdf-primer>. This package supports RDF by implementing an R interface to the Redland RDF C library, described at <http://librdf.org/docs/api/index.html>. In brief, RDF provides a structured graph consisting of Statements composed of Subject, Predicate, and Object Nodes.
Author: Matthew B. Jones [aut, cre], Peter Slaughter [aut], Jeroen Ooms [aut], Carl Boettiger [aut], Scott Chamberlain [aut], David Beckett [cph], University of Bristol [cph], Regents of the University of California [cph]
Maintainer: Matthew B. Jones <jones@nceas.ucsb.edu>

Diff between redland versions 1.0.17-8 dated 2016-04-26 and 1.0.17-9 dated 2016-12-14

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New package pals with initial version 1.0
Package: pals
Version: 1.0
Authors@R: person("Kevin","Wright", email="kw.stat@gmail.com", role=c("aut","cre"))
Date: 2016-12-12
Title: Color Palettes, Colormaps, and Tools to Evaluate Them
Description: A comprehensive collection of color palettes, colormaps, and tools to evaluate them.
URL: https://github.com/kwstat/pals
BugReports: https://github.com/kwstat/pals/issues
VignetteBuilder: knitr
Depends: R (>= 2.10), maps,
Imports: dichromat, colorspace, graphics, grDevices, mapproj, methods, rgl, stats
Suggests: ggplot2, knitr, reshape2, testthat
License: GPL-3 + file LICENSE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-14 20:31:40 UTC; wrightkevi
Author: Kevin Wright [aut, cre]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-14 23:56:19

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Package goeveg updated to version 0.3.0 with previous version 0.2.0 dated 2016-06-21

Title: Functions for Community Data and Ordinations
Description: A collection of functions useful in (vegetation) community analyses and ordinations, mainly to facilitate plotting and interpretation. Includes automatic species selection for ordination diagrams, species response curves and rank-abundance curves.
Author: Friedemann Goral [aut, cre], Jenny Schellenberg [aut]
Maintainer: Friedemann Goral <fgoral@gwdg.de>

Diff between goeveg versions 0.2.0 dated 2016-06-21 and 0.3.0 dated 2016-12-14

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Package colorspace updated to version 1.3-2 with previous version 1.3-1 dated 2016-11-18

Title: Color Space Manipulation
Description: Carries out mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided along with an interactive palette picker (with either a Tcl/Tk or a shiny GUI).
Author: Ross Ihaka [aut], Paul Murrell [aut], Kurt Hornik [aut], Jason C. Fisher [aut], Reto Stauffer [aut], Achim Zeileis [aut, cre]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>

Diff between colorspace versions 1.3-1 dated 2016-11-18 and 1.3-2 dated 2016-12-14

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New package AbSim with initial version 0.1
Package: AbSim
Type: Package
Title: Time Resolved Simulations of Antibody Repertoires
Version: 0.1
Date: 2016-12-14
Author: Alexander Yermanos
Maintainer: Alexander Yermanos <ayermano@ethz.ch>
Depends: R(>= 3.1.0), ape, poweRlaw, stats
Description: Simulation methods for the evolution of antibody repertoires. The heavy chain variable region of both human and C57BL/6 mice can be simulated in a time-dependent fashion. Both single lineages using one set of V-, D-, and J-genes or full repertoires can be simulated. The algorithm begins with an initial VDJ recombination event, starting the first phylogenetic tree. Upon completion, the main loop of the algorithm begins, with each iteration representing one simulated time step. Various mutation events are possible at each time step, contributing to a diverse final repertoire.
License: GPL-2
Encoding: UTF-8
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-14 22:42:32 UTC; ayermano
Repository: CRAN
Date/Publication: 2016-12-15 00:04:12

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Package Rfast updated to version 1.7.2 with previous version 1.7.1 dated 2016-12-03

Title: Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Column- and row- wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), Mahalanobis distance are some of the many fast functions.
Author: Manos Papadakis, Michail Tsagris, Ioannis Tsamardinos, Matteo Fasiolo, Giorgos Borboudakis and John Burkardt
Maintainer: Manos Papadakis <papadakm95@gmail.com>

Diff between Rfast versions 1.7.1 dated 2016-12-03 and 1.7.2 dated 2016-12-14

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Package rcompanion updated to version 1.2.0 with previous version 1.1.3 dated 2016-11-14

Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support "Summary and Analysis of Extension Education Program Evaluation in R" and "An R Companion for the Handbook of Biological Statistics". Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>

Diff between rcompanion versions 1.1.3 dated 2016-11-14 and 1.2.0 dated 2016-12-14

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Package nimble updated to version 0.6-3 with previous version 0.6-2 dated 2016-11-23

Title: Flexible BUGS-Compatible System for Hierarchical Statistical Modeling and Algorithm Development
Description: Flexible application of algorithms to models specified in the BUGS language. Algorithms can be written in the NIMBLE language and made available to any model.
Author: Perry de Valpine, Christopher Paciorek, Daniel Turek, Cliff Anderson- Bergman, Duncan Temple Lang
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>

Diff between nimble versions 0.6-2 dated 2016-11-23 and 0.6-3 dated 2016-12-14

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Package wux updated to version 2.2-1 with previous version 2.2-0 dated 2016-01-13

Title: Wegener Center Climate Uncertainty Explorer
Description: Methods to calculate and interpret climate change signals and time series from climate multi-model ensembles. Climate model output in binary 'NetCDF' format is read in and aggregated over a specified region to a data.frame for statistical analysis. Global Circulation Models, as the 'CMIP5' simulations, can be read in the same way as Regional Climate Models, as e.g. the 'CORDEX' or 'ENSEMBLES' simulations. The package has been developed at the 'Wegener Center for Climate and Global Change' at the University of Graz, Austria.
Author: Thomas Mendlik [aut, cre], Georg Heinrich [aut], Armin Leuprecht [aut], Andreas Gobiet [ths]
Maintainer: Thomas Mendlik <thomas.mendlik@uni-graz.at>

Diff between wux versions 2.2-0 dated 2016-01-13 and 2.2-1 dated 2016-12-14

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Package TR8 updated to version 0.9.15 with previous version 0.9.14 dated 2016-03-31

Title: A Tool for Downloading Functional Traits Data for Plant Species
Description: Plant ecologists often need to collect "traits" data about plant species which are often scattered among various databases: TR8 contains a set of tools which take care of automatically retrieving some of those functional traits data for plant species from publicly available databases (Biolflor, The Ecological Flora of the British Isles, LEDA traitbase, Ellenberg values for Italian Flora, Mycorrhizal intensity databases, Catminat, BROT, PLANTS, Jepson Flora Project). The TR8 name, inspired by "car plates" jokes, was chosen since it both reminds of the main object of the package and is extremely short to type.
Author: Gionata Bocci <boccigionata@gmail.com>
Maintainer: Gionata Bocci <boccigionata@gmail.com>

Diff between TR8 versions 0.9.14 dated 2016-03-31 and 0.9.15 dated 2016-12-14

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Package spBayesSurv updated to version 1.0.6 with previous version 1.0.5 dated 2016-10-10

Title: Bayesian Modeling and Analysis of Spatially Correlated Survival Data
Description: Provides several Bayesian survival models for spatial/non-spatial survival data: marginal Bayesian Nonparametric models, marginal Bayesian proportional hazards models, generalized accelerated failure time frailty models, and standard semiparametric frailty models within the context of proportional hazards, proportional odds and accelerated failure time.
Author: Haiming Zhou <zhouh@niu.edu> and Tim Hanson <hansont@stat.sc.edu>
Maintainer: Haiming Zhou <zhouh@niu.edu>

Diff between spBayesSurv versions 1.0.5 dated 2016-10-10 and 1.0.6 dated 2016-12-14

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New package seasonalview with initial version 0.1.3
Package: seasonalview
Type: Package
Title: Graphical User Interface for Seasonal Adjustment
Version: 0.1.3
Date: 2016-12-14
Author: Christoph Sax
Maintainer: Christoph Sax <christoph.sax@gmail.com>
Description: A graphical user interface to the 'seasonal' package and 'X-13ARIMA-SEATS', the U.S. Census Bureau's seasonal adjustment software. Unifies the code base of <http://www.seasonal.website> and the GUI in the 'seasonal' package.
Depends: seasonal (>= 1.3), shiny (>= 0.14)
Imports: shinydashboard (>= 0.5.3), dygraphs (>= 1.1.1.3), openxlsx, xtable, xts, zoo
License: GPL-3
URL: http://www.seasonal.website
BugReports: https://github.com/christophsax/seasonalview
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-14 13:21:45 UTC; christoph
Repository: CRAN
Date/Publication: 2016-12-14 17:23:38

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Package revealjs updated to version 0.8 with previous version 0.7 dated 2016-08-01

Title: R Markdown Format for 'reveal.js' Presentations
Description: R Markdown format for 'reveal.js' presentations, a framework for easily creating beautiful presentations using HTML.
Author: Hakim El Hattab [aut, cph] (reveal.js-3.2.0, https://github.com/hakimel/reveal.js), Asvin Goel [ctb, cph] (chalkboard plugin), JJ Allaire [aut, cre], RStudio [cph]
Maintainer: JJ Allaire <jj@rstudio.com>

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Package relMix updated to version 1.2.2 with previous version 1.2 dated 2016-09-18

Title: Relationship Inference for DNA Mixtures
Description: Makes relationship inference involving DNA mixtures with unknown profiles.
Author: Navreet Kaur, Thore Egeland, Guro Dorum
Maintainer: Guro Dorum <guro.dorum@gmail.com>

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Package progress updated to version 1.1.2 with previous version 1.1.1 dated 2016-12-13

Title: Terminal Progress Bars
Description: Configurable Progress bars, they may include percentage, elapsed time, and/or the estimated completion time. They work in terminals, in 'Emacs' 'ESS', 'RStudio', 'Windows' 'Rgui' and the 'macOS' 'R.app'. The package also provides a 'C++' 'API', that works with or without 'Rcpp'.
Author: Gábor Csárdi [aut, cre], Rich FitzJohn [aut]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>

Diff between progress versions 1.1.1 dated 2016-12-13 and 1.1.2 dated 2016-12-14

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Package NScluster updated to version 1.1.0 with previous version 1.0.2 dated 2014-08-09

Title: Simulation and Estimation of the Neyman-Scott Type Spatial Cluster Models
Description: Simulation and estimation for Neyman-Scott spatial cluster point process models and their extensions. For estimating parameters by the simplex method, parallel computation using OpenMP application programming interface is available.
Author: The Institute of Statistical Mathematics, based on the program by Ushio Tanaka
Maintainer: Masami Saga <msaga@mtb.biglobe.ne.jp>

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Package nomogramEx updated to version 2.0 with previous version 1.0 dated 2016-11-30

Title: Extract Equations from a Nomogram
Description: A nomogram can not be easily applied, because it is difficult to calculate the points or even the survival probability. The package, including a function of nomogramEx(), is to extract the polynomial equations to calculate the points of each variable, and the survival probability corresponding to the total points.
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>

Diff between nomogramEx versions 1.0 dated 2016-11-30 and 2.0 dated 2016-12-14

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Package Matrix.utils updated to version 0.9.4 with previous version 0.9.3 dated 2016-09-22

Title: Data.frame-Like Operations on Sparse and Dense Matrix Objects
Description: Implements data manipulation methods such as cast, aggregate, and merge/join for Matrix and matrix-like objects.
Author: Craig Varrichio <canthony427@gmail.com>
Maintainer: Craig Varrichio <canthony427@gmail.com>

Diff between Matrix.utils versions 0.9.3 dated 2016-09-22 and 0.9.4 dated 2016-12-14

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Package gjam updated to version 2.1.1 with previous version 2.1 dated 2016-11-29

Title: Generalized Joint Attribute Modeling
Description: Analyzes joint attribute data (e.g., species abundance) that are combinations of continuous and discrete data with Gibbs sampling.
Author: James S. Clark, Daniel Taylor-Rodriquez
Maintainer: James S. Clark <jimclark@duke.edu>

Diff between gjam versions 2.1 dated 2016-11-29 and 2.1.1 dated 2016-12-14

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Package elementR updated to version 1.2 with previous version 1.1 dated 2016-08-30

Title: A Shiny Application for Reducing Elemental LA-ICPMS Data from Solid Structures
Description: Aims to facilitate the reduction of elemental microchemistry data from solid-phase LA-ICPMS analysis (laser ablation inductive coupled plasma mass spectrometry). The elementR package provides a reactive and user friendly interface for conducting all steps needed for an optimal data reduction while leaving maximum control for user.
Author: Charlotte Sirot, Francois Guilhaumon, Franck Ferraton, Audrey Darnaude, Jacques Panfili, Amber Child
Maintainer: Charlotte Sirot <charlott.sirot@gmail.com>

Diff between elementR versions 1.1 dated 2016-08-30 and 1.2 dated 2016-12-14

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Package DynNom updated to version 4.0 with previous version 3.0.1 dated 2016-09-27

Title: Dynamic Nomograms for Linear, Generalized Linear and Proportional Hazard Models
Description: Demonstrate the results of a statistical model object as a dynamic nomogram in an 'RStudio' panel or web browser. Also, the generic DNbuilder function in this package provides a simple and straightforward way to build and publish a dynamic nomogram on the web to use the app independent of R. DynNom supports a variety of model objects; 'lm', 'glm', 'coxph' and also 'Ols', 'Glm', 'lrm', 'cph' models.
Author: Amirhossein Jalali, Davood Roshan, Alberto Alvarez-Iglesias, John Newell
Maintainer: Amirhossein Jalali <a.jalali2@nuigalway.ie>

Diff between DynNom versions 3.0.1 dated 2016-09-27 and 4.0 dated 2016-12-14

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Package dyn updated to version 0.2-9.2 with previous version 0.2-9.1 dated 2016-12-13

Title: Time Series Regression
Description: Time series regression. The dyn class interfaces ts, irts(), zoo() and zooreg() time series classes to lm(), glm(), loess(), quantreg::rq(), MASS::rlm(), MCMCpack::MCMCregress(), quantreg::rq(), randomForest::randomForest() and other regression functions allowing those functions to be used with time series including specifications that may contain lags, diffs and missing values.
Author: G. Grothendieck
Maintainer: M. Leeds <markleeds2@gmail.com>

Diff between dyn versions 0.2-9.1 dated 2016-12-13 and 0.2-9.2 dated 2016-12-14

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New package datasets.load with initial version 0.1.0
Package: datasets.load
Title: Interface for Loading Datasets
Version: 0.1.0
Authors@R: person("Bastiaan", "quast", email = "bquast@gmail.com", role = c("aut", "cre"))
Description: Visual interface for loading datasets in RStudio from all installed (unloaded) packages.
Depends: R (>= 3.0.0)
Imports: shiny, miniUI, DT
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-12-14 17:11:30 UTC; bquast
Author: Bastiaan quast [aut, cre]
Maintainer: Bastiaan quast <bquast@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-14 18:36:29

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Package ClustVarLV updated to version 1.5.1 with previous version 1.5.0 dated 2016-08-20

Title: Clustering of Variables Around Latent Variables
Description: Functions for the clustering of variables around Latent Variables. Each cluster of variables, which may be defined as a local or directional cluster, is associated with a latent variable. External variables measured on the same observations or/and additional information on the variables can be taken into account. A "noise" cluster or sparse latent variables can also de defined.
Author: Evelyne Vigneau [aut, cre], Mingkun Chen [ctb]
Maintainer: Evelyne Vigneau <evelyne.vigneau@oniris-nantes.fr>

Diff between ClustVarLV versions 1.5.0 dated 2016-08-20 and 1.5.1 dated 2016-12-14

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New package BTYDplus with initial version 1.0.1
Package: BTYDplus
Type: Package
Title: Probabilistic Models for Assessing and Predicting your Customer Base
Version: 1.0.1
Authors@R: person("Michael", "Platzer", email = "michael.platzer@gmail.com", role = c("aut", "cre"))
Description: Provides advanced statistical methods to describe and predict customers' purchase behavior in a non-contractual setting. It uses historic transaction records to fit a probabilistic model, which then allows to compute quantities of managerial interest on a cohort- as well as on a customer level (Customer Lifetime Value, Customer Equity, P(alive), etc.). This package complements the BTYD package by providing several additional buy-till-you-die models, that have been published in the marketing literature, but whose implementation are complex and non-trivial. These models are: NBD, MBG/NBD, BG/CNBD-k, MBG/CNBD-k, Pareto/NBD (HB), Pareto/NBD (Abe) and Pareto/GGG.
URL: https://github.com/mplatzer/BTYDplus#readme
BugReports: https://github.com/mplatzer/BTYDplus/issues
License: GPL-3
LinkingTo: Rcpp
Depends: R (>= 3.2.0)
Imports: Rcpp, BTYD (>= 2.3), coda, data.table, mvtnorm, bayesm, stats, graphics
Suggests: testthat, gsl, covr, knitr, rmarkdown, lintr (>= 1.0.0)
RoxygenNote: 5.0.1
LazyData: true
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-12-14 10:15:47 UTC; m
Author: Michael Platzer [aut, cre]
Maintainer: Michael Platzer <michael.platzer@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-14 17:23:14

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Package bnspatial updated to version 1.0.1 with previous version 1.0 dated 2016-07-27

Title: Spatial Implementation of Bayesian Networks and Mapping
Description: Package for the spatial implementation of Bayesian Networks and mapping in geographical space. It makes maps of expected value (or most likely state) given known and unknown conditions, maps of uncertainty measured as coefficient of variation or Shannon index (entropy), maps of probability associated to any states of any node of the network. Some additional features are provided as well: parallel processing options, data discretization routines and function wrappers designed for users with minimal knowledge of the R language. Outputs can be exported to any common GIS format. Development was funded by the European Union FP7 (2007-2013), under project ROBIN (agreement 283093).
Author: Dario Masante [aut, cre]
Maintainer: Dario Masante <dario.masante@gmail.com>

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New package bayesianETAS with initial version 1.0
Package: bayesianETAS
Title: Bayesian Estimation of the ETAS Model for Earthquake Occurrences
Version: 1.0
Date: 2016-12-10
Depends: R (>= 2.15.0)
Author: Gordon J. Ross
Maintainer: Gordon J. Ross <gordon@gordonjross.co.uk>
Description: The Epidemic Type Aftershock Sequence (ETAS) model is one of the best-performing methods for modeling and forecasting earthquake occurrences. This package implements Bayesian estimation routines to draw samples from the full posterior distribution of the model parameters, given an earthquake catalog.
License: GPL-3
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-12-14 11:28:37 UTC; gordonross
Repository: CRAN
Date/Publication: 2016-12-14 17:23:27

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Package basefun updated to version 0.0-34 with previous version 0.0-33 dated 2016-09-13

Title: Infrastructure for Computing with Basis Functions
Description: Some very simple infrastructure for basis functions.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

Diff between basefun versions 0.0-33 dated 2016-09-13 and 0.0-34 dated 2016-12-14

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Package its (with last version 1.1.8) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2009-09-06 1.1.8
2008-07-05 1.1.7
2006-12-10 1.1.5

Permanent link
Package ca updated to version 0.70 with previous version 0.64 dated 2016-02-05

Title: Simple, Multiple and Joint Correspondence Analysis
Description: Computation and visualization of simple, multiple and joint correspondence analysis.
Author: Michael Greenacre [aut], Oleg Nenadic [aut, cre], Michael Friendly [ctb]
Maintainer: Oleg Nenadic <onenadi@uni-goettingen.de>

Diff between ca versions 0.64 dated 2016-02-05 and 0.70 dated 2016-12-14

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Package pbmcapply updated to version 1.1.3 with previous version 1.1.2 dated 2016-11-24

Title: Tracking the Progress of Mc*pply with Progress Bar
Description: A light-weight package helps you track and visualize the progress of parallel version of vectorized R functions (mc*apply). The package works on *nix (Linux, Unix such as macOS) system only due to the lack of fork() functionality, which is essential for mc*apply, on Windows.
Author: Kevin Kuang
Maintainer: Kevin kuang <kvn.kuang@mail.utoronto.ca>

Diff between pbmcapply versions 1.1.2 dated 2016-11-24 and 1.1.3 dated 2016-12-14

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Package mma updated to version 4.0-0 with previous version 3.1-0 dated 2016-08-08

Title: Multiple Mediation Analysis
Description: Used for general multiple mediation analysis. The analysis method is described in Yu et al. (2014) <doi:10.4172/2155-6180.1000189> "General Multiple Mediation Analysis With an Application to Explore Racial Disparity in Breast Cancer Survival", published on Journal of Biometrics & Biostatistics, 5(2):189.
Author: Qingzhao Yu and Bin Li
Maintainer: Qingzhao Yu <qyu@lsuhsc.edu>

Diff between mma versions 3.1-0 dated 2016-08-08 and 4.0-0 dated 2016-12-14

 DESCRIPTION             |   18 
 MD5                     |   26 
 NAMESPACE               |    2 
 R/mma.r                 | 1808 +++++++++++++++++++++++++++---------------------
 man/boot.med.Rd         |   48 +
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 man/plot.mma.Rd         |   11 
 man/print.med.Rd        |    4 
 man/print.mma.Rd        |    6 
 man/summary.med_iden.Rd |    2 
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 14 files changed, 1252 insertions(+), 862 deletions(-)

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Package FLSSS updated to version 5.2 with previous version 5.1 dated 2016-12-13

Title: Multi-Threaded Multidimensional Fixed Size Subset Sum Solver and Extension to General-Purpose Knapsack Problem
Description: A novel algorithm for solving the subset sum problem with bounded error in multidimensional real domain and its application to the general-purpose knapsack problem.
Author: Charlie Wusuo Liu
Maintainer: Charlie Wusuo Liu <liuwusuo@gmail.com>

Diff between FLSSS versions 5.1 dated 2016-12-13 and 5.2 dated 2016-12-14

 DESCRIPTION                 |    6 -
 MD5                         |   10 +-
 R/FLSSS_20160323.r          |   19 ++---
 man/mFLSSSpar.Rd            |   12 +--
 man/mmFLknapsack.Rd         |   15 ++--
 src/FLSSSmulti_20160323.cpp |  161 +++++++-------------------------------------
 6 files changed, 58 insertions(+), 165 deletions(-)

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Package copCAR updated to version 1.0-3 with previous version 1.0-2 dated 2016-07-04

Title: Fitting the copCAR Regression Model for Discrete Areal Data
Description: Provides tools for fitting the copCAR (Hughes, 2015) <DOI:10.1080/10618600.2014.948178> regression model for discrete areal data. Three types of estimation are supported: continuous extension, composite marginal likelihood, and distributional transform.
Author: Emily Goren <emily.goren@gmail.com> and John Hughes <jphughesjr@gmail.com>
Maintainer: John Hughes <jphughesjr@gmail.com>

Diff between copCAR versions 1.0-2 dated 2016-07-04 and 1.0-3 dated 2016-12-14

 DESCRIPTION             |   17 +-
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 NAMESPACE               |    5 
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 R/zzz.R                 |    9 -
 man/adjacency.matrix.Rd |   15 --
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 man/rcopCAR.Rd          |   40 +-----
 man/summary.copCAR.Rd   |   16 --
 man/vcov.copCAR.Rd      |   12 -
 src/buildM.cpp          |    4 
 src/buildM.h            |    2 
 12 files changed, 152 insertions(+), 297 deletions(-)

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Package BayesBD updated to version 1.1 with previous version 1.0 dated 2016-08-30

Title: Bayesian Inference for Image Boundaries
Description: Provides tools for carrying out a Bayesian analysis of image boundaries. Functions are provided for both binary (Bernoulli) and continuous (Gaussian) images. Examples, along with an interactive shiny function illustrate how to perform simulations, analyze custom data, and plot estimates and credible intervals.
Author: Nicholas Syring, Meng Li
Maintainer: Nicholas Syring <nasyrin@gmail.com>

Diff between BayesBD versions 1.0 dated 2016-08-30 and 1.1 dated 2016-12-14

 DESCRIPTION                  |    8 +-
 MD5                          |   36 +++++-----
 NAMESPACE                    |    3 
 R/BayesBDshiny.R             |  139 ++++++++++++++++++++++++++++++++-------
 R/RcppExports.R              |   14 ++-
 R/plotBD.R                   |   24 +++++-
 data/pet_tumor1s_data.csv.gz |only
 data/pet_tumor2s_data.csv.gz |only
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 man/BayesBDnormal.Rd         |   16 +++-
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 man/triangle2.Rd             |    4 -
 src/RcppExports.cpp          |   15 ++--
 src/rcpparma_hello_world.cpp |  153 ++++++++++++++++++++++++++++---------------
 21 files changed, 318 insertions(+), 140 deletions(-)

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Package activpalProcessing updated to version 1.0.2 with previous version 1.0.1 dated 2016-03-28

Title: Process activPAL Events Files
Description: Performs estimation of physical activity and sedentary behavior variables from activPAL (PAL Technologies, Glasgow, Scotland) events files. See <http://paltechnologies.com> for more information on the activPAL.
Author: Kate Lyden
Maintainer: Kate Lyden <activpalProcessing@gmail.com>

Diff between activpalProcessing versions 1.0.1 dated 2016-03-28 and 1.0.2 dated 2016-12-14

 DESCRIPTION                               |    8 ++--
 MD5                                       |   58 +++++++++++++++---------------
 R/activpal.file.reader.R                  |    1 
 R/breaks.AP.R                             |    1 
 R/guideline.bouts.min.R                   |    1 
 R/guideline.bouts.num.R                   |    1 
 R/identifyDirectory.R                     |    1 
 R/identifyStudy.R                         |    1 
 R/identifySubjects.R                      |    1 
 R/identifyVisits.R                        |    1 
 R/lit.min.AP.R                            |    7 ++-
 R/mvpa.min.AP.R                           |    1 
 R/on.off.R                                |    1 
 R/process.AP.R                            |   41 ++++++++++++---------
 R/prolonged.sed.bouts.min.R               |    1 
 R/second.by.second.R                      |    6 ---
 R/sed.min.AP.R                            |    1 
 R/stand.min.AP.R                          |    1 
 R/step.min.AP.R                           |    1 
 R/wake.R                                  |    1 
 data/PhysicalActivityIntervention_7_1.rda |binary
 data/PhysicalActivityIntervention_7_2.rda |binary
 data/PhysicalActivityIntervention_8_1.rda |binary
 data/PhysicalActivityIntervention_8_2.rda |binary
 data/events.data.rda                      |binary
 data/log.bed.rda                          |binary
 data/log.on.off.rda                       |binary
 data/log.subjects.rda                     |binary
 data/second.by.second.data.rda            |binary
 man/lit.min.AP.Rd                         |   17 ++++----
 30 files changed, 71 insertions(+), 81 deletions(-)

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