Sun, 18 Dec 2016

Package pdp updated to version 0.3.0 with previous version 0.2.0 dated 2016-12-03

Title: Partial Dependence Plots
Description: A general framework for constructing partial dependence (i.e., marginal effect) plots from various types machine learning models in R.
Author: Brandon Greenwell [aut, cre]
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>

Diff between pdp versions 0.2.0 dated 2016-12-03 and 0.3.0 dated 2016-12-18

 DESCRIPTION          |   13 ++--
 MD5                  |   23 ++++----
 NAMESPACE            |    3 +
 NEWS.md              |    9 ++-
 R/partial.R          |  101 ++++++++++++++++++++++++++++---------
 R/pdClassification.R |   83 ++++++++++++++++--------------
 R/pdRegression.R     |   34 +++++++-----
 R/pdp.R              |only
 R/plotPartial.R      |   29 +++++-----
 R/utils.R            |   15 +++++
 README.md            |  137 ++++++++++++++-------------------------------------
 man/grid.arrange.Rd  |only
 man/partial.Rd       |   49 +++++++++++++++---
 man/pdp.Rd           |only
 14 files changed, 281 insertions(+), 215 deletions(-)

More information about pdp at CRAN
Permanent link

Package pbdMPI updated to version 0.3-3 with previous version 0.3-2 dated 2016-07-15

Title: Programming with Big Data -- Interface to MPI
Description: An efficient interface to MPI by utilizing S4 classes and methods with a focus on Single Program/Multiple Data ('SPMD') parallel programming style, which is intended for batch parallel execution.
Author: Wei-Chen Chen [aut, cre], George Ostrouchov [aut], Drew Schmidt [aut], Pragneshkumar Patel [aut], Hao Yu [aut], Christian Heckendorf [ctb] (FreeBSD), Brian Ripley [ctb] (Windows HPC Pack 2012), R Core team [ctb] (some functions are modified from the base packages)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>

Diff between pbdMPI versions 0.3-2 dated 2016-07-15 and 0.3-3 dated 2016-12-18

 ChangeLog                                     |   19 +++++-
 DESCRIPTION                                   |   15 ++---
 INSTALL                                       |   10 +--
 MD5                                           |   30 +++++-----
 NAMESPACE                                     |    4 -
 README.md                                     |    3 -
 inst/CITATION                                 |    8 +-
 inst/doc/pbdMPI-guide.Rnw                     |   12 +---
 inst/doc/pbdMPI-guide.pdf                     |binary
 man/vv_seed.Rd                                |    2 
 src/Makevars.win                              |   78 ++++++++++++++++++++++++--
 vignettes/pbdMPI-guide.Rnw                    |   12 +---
 vignettes/pbdMPI-include/01-introduction.tex  |    2 
 vignettes/pbdMPI-include/03-faq.tex           |   34 ++++++++++-
 vignettes/pbdMPI-include/04-windows_msmpi.tex |    4 -
 vignettes/pbdMPI-include/pbdMPI.bib           |   16 ++---
 16 files changed, 177 insertions(+), 72 deletions(-)

More information about pbdMPI at CRAN
Permanent link

Package robustlmm updated to version 2.1-2 with previous version 2.1 dated 2016-12-01

Title: Robust Linear Mixed Effects Models
Description: A method to fit linear mixed effects models robustly. Robustness is achieved by modification of the scoring equations combined with the Design Adaptive Scale approach.
Author: Manuel Koller
Maintainer: Manuel Koller <koller.manuel@gmail.com>

Diff between robustlmm versions 2.1 dated 2016-12-01 and 2.1-2 dated 2016-12-18

 robustlmm-2.1-2/robustlmm/DESCRIPTION              |    8 
 robustlmm-2.1-2/robustlmm/MD5                      |   29 
 robustlmm-2.1-2/robustlmm/R/helpers.R              |    5 
 robustlmm-2.1-2/robustlmm/R/psiFunc2.R             |   10 
 robustlmm-2.1-2/robustlmm/inst/doc/rlmer.Rnw       |    8 
 robustlmm-2.1-2/robustlmm/inst/doc/rlmer.pdf       |binary
 robustlmm-2.1-2/robustlmm/inst/include/robustlmm.h |   41 +
 robustlmm-2.1-2/robustlmm/src/Integration.cpp      |only
 robustlmm-2.1-2/robustlmm/src/Integration.h        |only
 robustlmm-2.1-2/robustlmm/src/PsiFunction.cpp      |  619 +++++++++------------
 robustlmm-2.1-2/robustlmm/src/PsiFunction.h        |only
 robustlmm-2.1-2/robustlmm/src/globals.h            |    1 
 robustlmm-2.1-2/robustlmm/tests/PsiFunction.R      |   12 
 robustlmm-2.1-2/robustlmm/vignettes/rlmer.Rnw      |    8 
 robustlmm-2.1-2/robustlmm/vignettes/rlmer.bib      |   11 
 robustlmm-2.1-2/robustlmm/vignettes/rlmer.sty      |    7 
 robustlmm-2.1/robustlmm/vignettes/jss.dtx          |only
 robustlmm-2.1/robustlmm/vignettes/jsslogo.pdf      |only
 18 files changed, 388 insertions(+), 371 deletions(-)

More information about robustlmm at CRAN
Permanent link

Package rly updated to version 1.2.1 with previous version 1.1.0 dated 2016-12-04

Title: 'Lex' and 'Yacc'
Description: R implementation of the common parsing tools 'lex' and 'yacc'.
Author: Marek Jagielski [aut, cre, cph], David M. Beazley [aut, cph]
Maintainer: Marek Jagielski <marek.jagielski@gmail.com>

Diff between rly versions 1.1.0 dated 2016-12-04 and 1.2.1 dated 2016-12-18

 rly-1.1.0/rly/tests/testthat/test.calclex2.R              |only
 rly-1.1.0/rly/tests/testthat/test.pkg_test2.R             |only
 rly-1.1.0/rly/tests/testthat/test.pkg_test3.R             |only
 rly-1.1.0/rly/tests/testthat/test.pkg_test4.R             |only
 rly-1.1.0/rly/tests/testthat/test.pkg_test5.R             |only
 rly-1.1.0/rly/tests/testthat/test.pkg_test6.R             |only
 rly-1.1.0/rly/tests/testthat/test.yacc_unicode_literals.R |only
 rly-1.2.1/rly/DESCRIPTION                                 |   12 +-
 rly-1.2.1/rly/MD5                                         |   20 +--
 rly-1.2.1/rly/NEWS.md                                     |   18 +++
 rly-1.2.1/rly/R/lex.R                                     |   12 +-
 rly-1.2.1/rly/R/yacc.R                                    |   68 +++++++++----
 rly-1.2.1/rly/tests/testthat/parser.out                   |only
 rly-1.2.1/rly/tests/testthat/test.yacc_error6.R           |   66 ++++++-------
 rly-1.2.1/rly/tests/testthat/test.yacc_nested.R           |   71 ++++++++++++++
 15 files changed, 193 insertions(+), 74 deletions(-)

More information about rly at CRAN
Permanent link

Package DirectStandardisation updated to version 1.2 with previous version 1.1 dated 2016-12-10

Title: Adjusted Means and Proportions by Direct Standardisation
Description: Calculate adjusted means and proportions of a variable by groups defined by another variable by direct standardisation, standardised to the structure of the dataset.
Author: Christiana Kartsonaki
Maintainer: Christiana Kartsonaki <christiana.kartsonaki@gmail.com>

Diff between DirectStandardisation versions 1.1 dated 2016-12-10 and 1.2 dated 2016-12-18

 DESCRIPTION                          |    8 +--
 MD5                                  |   14 ++---
 R/adjmeans.R                         |   15 +++++
 R/adjprop.R                          |   89 +++++++++++++++++++++++------------
 build/partial.rdb                    |binary
 man/DirectStandardisation-package.Rd |    1 
 man/adjmeans.Rd                      |   30 +++++++++--
 man/adjprop.Rd                       |   74 +++++++++++++++++++++++++----
 8 files changed, 173 insertions(+), 58 deletions(-)

More information about DirectStandardisation at CRAN
Permanent link

Package sjstats updated to version 0.7.1 with previous version 0.7.0 dated 2016-12-08

Title: Collection of Convenient Functions for Common Statistical Computations
Description: Collection of convenient functions for common statistical computations, which are not directly provided by R's base or stats packages. This package aims at providing, first, shortcuts for statistical measures, which otherwise could only be calculated with additional effort (like standard errors or root mean squared errors). Second, these shortcut functions are generic (if appropriate), and can be applied not only to vectors, but also to other objects as well (e.g., the Coefficient of Variation can be computed for vectors, linear models, or linear mixed models; the r2()-function returns the r-squared value for 'lm', 'glm', 'merMod' or 'lme' objects). The focus of most functions lies on summary statistics or fit measures for regression models, including generalized linear models and mixed effects models. However, some of the functions also deal with other statistical measures, like Cronbach's Alpha, Cramer's V, Phi etc.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>

Diff between sjstats versions 0.7.0 dated 2016-12-08 and 0.7.1 dated 2016-12-18

 DESCRIPTION            |   10 -
 MD5                    |   22 ++--
 NEWS                   |  148 ++++++++++++++------------
 NEWS.md                |   84 ++++++++-------
 R/icc.R                |    6 -
 R/merMod_p.R           |  218 +++++++++++++++++++--------------------
 R/prop.R               |  269 ++++++++++++++++++++++++-------------------------
 R/se.R                 |    4 
 R/std_b.R              |    7 -
 build/partial.rdb      |binary
 man/prop.Rd            |    4 
 man/sjstats-package.Rd |   74 ++++++-------
 12 files changed, 434 insertions(+), 412 deletions(-)

More information about sjstats at CRAN
Permanent link

Package longurl updated to version 0.3.0 with previous version 0.2.0 dated 2016-08-31

Title: Expand Short URLs
Description: Tools expand vectors of short URLs into long URLs. No API services are used, which may mean that this operates more slowly than API services do (since they usually cache results of expansions every user of the service performs).
Author: Bob Rudis [aut, cre]
Maintainer: Bob Rudis <bob@rud.is>

Diff between longurl versions 0.2.0 dated 2016-08-31 and 0.3.0 dated 2016-12-18

 DESCRIPTION         |   16 +++++------
 MD5                 |   14 +++++-----
 NAMESPACE           |    7 +++--
 NEWS.md             |    5 +++
 R/longurl-package.r |    9 ++----
 R/longurl.r         |   72 +++++++++++++++++-----------------------------------
 man/expand_urls.Rd  |   28 +++++++++-----------
 man/longurl.Rd      |    5 +--
 8 files changed, 67 insertions(+), 89 deletions(-)

More information about longurl at CRAN
Permanent link

Package smooth updated to version 1.5.2 with previous version 1.5.1 dated 2016-12-01

Title: Forecasting Using Smoothing Functions
Description: The set of smoothing functions used for time series analysis and in forecasting. Currently the package includes exponential smoothing models and SARIMA in state-space form + several simulation functions.
Author: Ivan Svetunkov [aut, cre] (Research Associate at Lancaster Centre for Forecasting, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>

Diff between smooth versions 1.5.1 dated 2016-12-01 and 1.5.2 dated 2016-12-18

 DESCRIPTION               |    8 +-
 MD5                       |   78 ++++++++++++------------
 NAMESPACE                 |   10 ++-
 NEWS                      |   17 +++++
 R/autoces.R               |    2 
 R/autossarima.R           |    2 
 R/ces.R                   |   23 +++----
 R/es.R                    |   50 ++++++++++-----
 R/ges.R                   |   19 ++---
 R/iss.R                   |   65 +++++++++++++-------
 R/methods.R               |  146 ++++++++++------------------------------------
 R/simces.R                |   14 ++--
 R/simes.R                 |   14 ++--
 R/simssarima.R            |   22 +++---
 R/sma.R                   |    9 +-
 R/ssarima.R               |   13 ++--
 R/ssfunctions.R           |   18 ++++-
 build/vignette.rds        |binary
 inst/doc/ces.html         |   46 +++++++-------
 inst/doc/es.html          |   74 +++++++++++------------
 inst/doc/ges.html         |   12 +--
 inst/doc/simulate.Rmd     |    6 -
 inst/doc/simulate.html    |   98 ++++++++++++++----------------
 inst/doc/sma.html         |    8 +-
 inst/doc/smooth.html      |    4 -
 inst/doc/ssarima.html     |   45 +++++++-------
 man/autoces.Rd            |    7 +-
 man/autossarima.Rd        |    8 +-
 man/ces.Rd                |    8 +-
 man/es.Rd                 |   10 +--
 man/ges.Rd                |   11 ++-
 man/iss.Rd                |    8 +-
 man/simces.Rd             |    2 
 man/simes.Rd              |    2 
 man/simssarima.Rd         |    2 
 man/sma.Rd                |    1 
 man/ssarima.Rd            |    8 +-
 tests/testthat/test_ces.R |    4 -
 tests/testthat/test_es.R  |    8 +-
 vignettes/simulate.Rmd    |    6 -
 40 files changed, 445 insertions(+), 443 deletions(-)

More information about smooth at CRAN
Permanent link

Package RAMP updated to version 1.9 with previous version 1.4 dated 2016-06-07

Title: Regularized Generalized Linear Models with Interaction Effects
Description: Provides an efficient procedure for fitting the entire solution path for high-dimensional regularized quadratic generalized linear models with interactions effects under the strong or weak heredity constraint.
Author: Yang Feng, Ning Hao and Hao Helen Zhang
Maintainer: Yang Feng <yang.feng@columbia.edu>

Diff between RAMP versions 1.4 dated 2016-06-07 and 1.9 dated 2016-12-18

 RAMP-1.4/RAMP/R/cd.lasso.R         |only
 RAMP-1.4/RAMP/R/ols.refit.R        |only
 RAMP-1.4/RAMP/src/cd_lasso_bin.f   |only
 RAMP-1.4/RAMP/src/cd_lasso_lin.f   |only
 RAMP-1.9/RAMP/ChangeLog            |only
 RAMP-1.9/RAMP/DESCRIPTION          |   13 -
 RAMP-1.9/RAMP/MD5                  |   39 ++--
 RAMP-1.9/RAMP/NAMESPACE            |    2 
 RAMP-1.9/RAMP/R/RAMP.R             |  333 ++++++++++++++++++-------------------
 RAMP-1.9/RAMP/R/cd.general.R       |   27 +--
 RAMP-1.9/RAMP/R/intertomain.R      |    4 
 RAMP-1.9/RAMP/R/loglik.R           |   10 -
 RAMP-1.9/RAMP/R/maintointer.R      |    2 
 RAMP-1.9/RAMP/R/oraclefit.R        |    2 
 RAMP-1.9/RAMP/R/outercprod.R       |    2 
 RAMP-1.9/RAMP/R/predict.RAMP.R     |   19 +-
 RAMP-1.9/RAMP/R/preprocess.R       |    2 
 RAMP-1.9/RAMP/R/print.RAMP.R       |    4 
 RAMP-1.9/RAMP/man/RAMP.Rd          |   47 +++--
 RAMP-1.9/RAMP/man/predict.RAMP.Rd  |   20 +-
 RAMP-1.9/RAMP/man/print.RAMP.Rd    |    4 
 RAMP-1.9/RAMP/src/cd_general_bin.f |   16 -
 RAMP-1.9/RAMP/src/cd_general_lin.f |   16 -
 23 files changed, 280 insertions(+), 282 deletions(-)

More information about RAMP at CRAN
Permanent link

Package pls updated to version 2.6-0 with previous version 2.5-0 dated 2015-08-22

Title: Partial Least Squares and Principal Component Regression
Description: Multivariate regression methods Partial Least Squares Regression (PLSR), Principal Component Regression (PCR) and Canonical Powered Partial Least Squares (CPPLS).
Author: Bjrn-Helge Mevik, Ron Wehrens and Kristian Hovde Liland
Maintainer: Bjrn-Helge Mevik <pls@mevik.net>

Diff between pls versions 2.5-0 dated 2015-08-22 and 2.6-0 dated 2016-12-18

 DESCRIPTION              |    8 +--
 MD5                      |   44 +++++++++++----------
 NAMESPACE                |   11 ++---
 R/kernelpls.fit.R        |    4 -
 R/ncomp.R                |only
 R/plots.R                |   27 +++++++++----
 build/vignette.rds       |binary
 inst/NEWS.Rd             |   17 +++++++-
 inst/doc/pls-manual.R    |   95 ++++++++++++++++++++++++++++-------------------
 inst/doc/pls-manual.Rnw  |   60 +++++++++++++++++++++++++----
 inst/doc/pls-manual.pdf  |binary
 man/coef.mvr.Rd          |    4 -
 man/coefplot.Rd          |    6 +-
 man/cppls.fit.Rd         |    4 -
 man/kernelpls.fit.Rd     |    4 -
 man/oscorespls.fit.Rd    |    4 -
 man/predplot.Rd          |    4 +
 man/selectNcomp.Rd       |only
 man/simpls.fit.Rd        |    4 -
 man/svdpc.fit.Rd         |    4 -
 man/validationplot.Rd    |    6 +-
 man/widekernelpls.fit.Rd |    4 -
 vignettes/pls-manual.Rnw |   60 +++++++++++++++++++++++++----
 vignettes/pls-manual.bib |   22 ++++++++++
 24 files changed, 278 insertions(+), 114 deletions(-)

More information about pls at CRAN
Permanent link

Package tigerstats updated to version 0.3 with previous version 0.2.7 dated 2015-09-23

Title: R Functions for Elementary Statistics
Description: A collection of data sets and functions that are useful in the teaching of statistics at an elementary level to students who may have little or no previous experience with the command line. The functions for elementary inferential procedures follow a uniform interface for user input. Some of the functions are instructional applets that can only be run on the R Studio integrated development environment with package 'manipulate' installed. Other instructional applets are Shiny apps that may be run locally. In teaching the package is used alongside of package 'mosaic', 'mosaicData' and 'abd', which are therefore listed as dependencies.
Author: Rebekah Robinson <rebekahrobinson14@gmail.com> and Homer White <hwhite0@georgetowncollege.edu>
Maintainer: Homer White <hwhite0@georgetowncollege.edu>

Diff between tigerstats versions 0.2.7 dated 2015-09-23 and 0.3 dated 2016-12-18

 tigerstats-0.2.7/tigerstats/build                   |only
 tigerstats-0.2.7/tigerstats/inst/doc                |only
 tigerstats-0.2.7/tigerstats/vignettes               |only
 tigerstats-0.3/tigerstats/DESCRIPTION               |   14 
 tigerstats-0.3/tigerstats/MD5                       |  320 +++++++-------------
 tigerstats-0.3/tigerstats/NAMESPACE                 |    2 
 tigerstats-0.3/tigerstats/R/barchartGC.R            |    1 
 tigerstats-0.3/tigerstats/R/data.R                  |    4 
 tigerstats-0.3/tigerstats/R/helpGC.R                |   96 +++---
 tigerstats-0.3/tigerstats/R/tigerstats-package.R    |    4 
 tigerstats-0.3/tigerstats/R/zzz.R                   |only
 tigerstats-0.3/tigerstats/inst/NEWS.Rd              |   11 
 tigerstats-0.3/tigerstats/man/BinomNorm.Rd          |    2 
 tigerstats-0.3/tigerstats/man/BinomSkew.Rd          |    2 
 tigerstats-0.3/tigerstats/man/CIMean.Rd             |    4 
 tigerstats-0.3/tigerstats/man/CIProp.Rd             |    2 
 tigerstats-0.3/tigerstats/man/ChisqSimSlow.Rd       |    2 
 tigerstats-0.3/tigerstats/man/DtrellHist.Rd         |    4 
 tigerstats-0.3/tigerstats/man/DtrellScat.Rd         |    2 
 tigerstats-0.3/tigerstats/man/EmpRule.Rd            |    6 
 tigerstats-0.3/tigerstats/man/EmpRuleGC.Rd          |    2 
 tigerstats-0.3/tigerstats/man/FakeSchool.Rd         |    2 
 tigerstats-0.3/tigerstats/man/FindRegLine.Rd        |    2 
 tigerstats-0.3/tigerstats/man/MeanSampler.Rd        |    2 
 tigerstats-0.3/tigerstats/man/Ovarian.Rd            |    6 
 tigerstats-0.3/tigerstats/man/ParseFormula.Rd       |    6 
 tigerstats-0.3/tigerstats/man/Points2Watch.Rd       |    2 
 tigerstats-0.3/tigerstats/man/PropSampler.Rd        |    2 
 tigerstats-0.3/tigerstats/man/RandomExp.Rd          |    4 
 tigerstats-0.3/tigerstats/man/RectShade.Rd          |    2 
 tigerstats-0.3/tigerstats/man/RegEstimate.Rd        |    2 
 tigerstats-0.3/tigerstats/man/SampDist2Means.Rd     |    2 
 tigerstats-0.3/tigerstats/man/SampDist2Props.Rd     |    2 
 tigerstats-0.3/tigerstats/man/SampDistMean.Rd       |    2 
 tigerstats-0.3/tigerstats/man/ShallowReg.Rd         |    2 
 tigerstats-0.3/tigerstats/man/SimpleRandom.Rd       |   14 
 tigerstats-0.3/tigerstats/man/SimpleRandom2.Rd      |    4 
 tigerstats-0.3/tigerstats/man/Skewer.Rd             |    2 
 tigerstats-0.3/tigerstats/man/SlowGoodness.Rd       |    2 
 tigerstats-0.3/tigerstats/man/SmallExp.Rd           |    2 
 tigerstats-0.3/tigerstats/man/Type12Errors.Rd       |    2 
 tigerstats-0.3/tigerstats/man/UnderShade.Rd         |    2 
 tigerstats-0.3/tigerstats/man/Variability.Rd        |    4 
 tigerstats-0.3/tigerstats/man/VaryCorrelation.Rd    |    2 
 tigerstats-0.3/tigerstats/man/alcohol.Rd            |    4 
 tigerstats-0.3/tigerstats/man/attitudes.Rd          |    4 
 tigerstats-0.3/tigerstats/man/barchartGC.Rd         |   10 
 tigerstats-0.3/tigerstats/man/beans.Rd              |    2 
 tigerstats-0.3/tigerstats/man/binomtestGC.Rd        |    6 
 tigerstats-0.3/tigerstats/man/cabrera.Rd            |    2 
 tigerstats-0.3/tigerstats/man/chisqtestGC.Rd        |    4 
 tigerstats-0.3/tigerstats/man/chugtime.Rd           |    2 
 tigerstats-0.3/tigerstats/man/colPerc.Rd            |    2 
 tigerstats-0.3/tigerstats/man/deathpen.Rd           |   10 
 tigerstats-0.3/tigerstats/man/expCounts.Rd          |    4 
 tigerstats-0.3/tigerstats/man/fuel.Rd               |    2 
 tigerstats-0.3/tigerstats/man/galton.Rd             |    2 
 tigerstats-0.3/tigerstats/man/gcfeeling.Rd          |    2 
 tigerstats-0.3/tigerstats/man/gcstudents.Rd         |    2 
 tigerstats-0.3/tigerstats/man/gss02.Rd              |    4 
 tigerstats-0.3/tigerstats/man/gss08.Rd              |    4 
 tigerstats-0.3/tigerstats/man/gss2012.Rd            |    2 
 tigerstats-0.3/tigerstats/man/hair_and_act.Rd       |    2 
 tigerstats-0.3/tigerstats/man/handheight.Rd         |    2 
 tigerstats-0.3/tigerstats/man/hanford1.Rd           |    4 
 tigerstats-0.3/tigerstats/man/hanford2.Rd           |    4 
 tigerstats-0.3/tigerstats/man/helpGC.Rd             |   14 
 tigerstats-0.3/tigerstats/man/henderson.Rd          |    2 
 tigerstats-0.3/tigerstats/man/hofbatting.Rd         |    2 
 tigerstats-0.3/tigerstats/man/hofpitching.Rd        |    2 
 tigerstats-0.3/tigerstats/man/imagpop.Rd            |    4 
 tigerstats-0.3/tigerstats/man/iqsiblings.Rd         |    2 
 tigerstats-0.3/tigerstats/man/knifeorgunblock.Rd    |    2 
 tigerstats-0.3/tigerstats/man/labels.Rd             |    2 
 tigerstats-0.3/tigerstats/man/ledgejump.Rd          |    8 
 tigerstats-0.3/tigerstats/man/lmGC.Rd               |    2 
 tigerstats-0.3/tigerstats/man/m111survey.Rd         |    2 
 tigerstats-0.3/tigerstats/man/m111surveyfa12.Rd     |    2 
 tigerstats-0.3/tigerstats/man/m111surveyfa13.Rd     |    2 
 tigerstats-0.3/tigerstats/man/music.Rd              |    2 
 tigerstats-0.3/tigerstats/man/napkins.Rd            |    2 
 tigerstats-0.3/tigerstats/man/nonresponse.Rd        |    8 
 tigerstats-0.3/tigerstats/man/nosmokeday.Rd         |    8 
 tigerstats-0.3/tigerstats/man/oldfaithful.Rd        |    2 
 tigerstats-0.3/tigerstats/man/pbinomGC.Rd           |    4 
 tigerstats-0.3/tigerstats/man/pchisqGC.Rd           |    2 
 tigerstats-0.3/tigerstats/man/pennstate1.Rd         |    2 
 tigerstats-0.3/tigerstats/man/plot.GClm.Rd          |    2 
 tigerstats-0.3/tigerstats/man/plot.polyGC.Rd        |    2 
 tigerstats-0.3/tigerstats/man/pnormGC.Rd            |    2 
 tigerstats-0.3/tigerstats/man/polyfitGC.Rd          |    2 
 tigerstats-0.3/tigerstats/man/popsamp.Rd            |    2 
 tigerstats-0.3/tigerstats/man/predict.GClm.Rd       |    2 
 tigerstats-0.3/tigerstats/man/predict.polyGC.Rd     |    2 
 tigerstats-0.3/tigerstats/man/print.GCbinomtest.Rd  |    2 
 tigerstats-0.3/tigerstats/man/print.GCchisqtest.Rd  |    2 
 tigerstats-0.3/tigerstats/man/print.GClm.Rd         |    2 
 tigerstats-0.3/tigerstats/man/print.GCttest.Rd      |    2 
 tigerstats-0.3/tigerstats/man/print.gcp1test.Rd     |    2 
 tigerstats-0.3/tigerstats/man/print.gcp2test.Rd     |    2 
 tigerstats-0.3/tigerstats/man/print.polyGC.Rd       |    2 
 tigerstats-0.3/tigerstats/man/proptestGC.Rd         |    4 
 tigerstats-0.3/tigerstats/man/ptGC.Rd               |    2 
 tigerstats-0.3/tigerstats/man/pushups.Rd            |    2 
 tigerstats-0.3/tigerstats/man/qnormGC.Rd            |    4 
 tigerstats-0.3/tigerstats/man/rowPerc.Rd            |    2 
 tigerstats-0.3/tigerstats/man/saltmarsh.Rd          |    6 
 tigerstats-0.3/tigerstats/man/sat.Rd                |    4 
 tigerstats-0.3/tigerstats/man/sealsO2.Rd            |    6 
 tigerstats-0.3/tigerstats/man/simpleFind.Rd         |    6 
 tigerstats-0.3/tigerstats/man/simpleKeyRev.Rd       |    6 
 tigerstats-0.3/tigerstats/man/stumps.Rd             |    2 
 tigerstats-0.3/tigerstats/man/tExplore.Rd           |    2 
 tigerstats-0.3/tigerstats/man/tSampler.Rd           |    2 
 tigerstats-0.3/tigerstats/man/temperature.Rd        |    2 
 tigerstats-0.3/tigerstats/man/theme.rpres.Rd        |    3 
 tigerstats-0.3/tigerstats/man/themerpres.Rd         |    3 
 tigerstats-0.3/tigerstats/man/tigerstats-package.Rd |    4 
 tigerstats-0.3/tigerstats/man/tips.Rd               |    4 
 tigerstats-0.3/tigerstats/man/tornado.Rd            |    4 
 tigerstats-0.3/tigerstats/man/ttestGC.Rd            |    6 
 tigerstats-0.3/tigerstats/man/ucdavis1.Rd           |    2 
 tigerstats-0.3/tigerstats/man/verlander.Rd          |   12 
 tigerstats-0.3/tigerstats/man/youthrisk03.Rd        |    2 
 124 files changed, 392 insertions(+), 432 deletions(-)

More information about tigerstats at CRAN
Permanent link

Package Rfast updated to version 1.7.3 with previous version 1.7.2 dated 2016-12-14

Title: Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Column- and row- wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), Mahalanobis distance are some of the many fast functions.
Author: Manos Papadakis, Michail Tsagris, Ioannis Tsamardinos, Matteo Fasiolo, Giorgos Borboudakis and John Burkardt
Maintainer: Manos Papadakis <papadakm95@gmail.com>

Diff between Rfast versions 1.7.2 dated 2016-12-14 and 1.7.3 dated 2016-12-18

 DESCRIPTION            |    8 ++++----
 MD5                    |   14 +++++++-------
 R/score.multinomregs.R |    2 +-
 man/Rfast-package.Rd   |    4 ++--
 src/Lgamma.cpp         |    2 --
 src/mn.cpp             |    9 +++------
 src/mn.h               |   32 +++++++++++++++++---------------
 src/sort_uniq_int.cpp  |   35 ++++++++++++++---------------------
 8 files changed, 48 insertions(+), 58 deletions(-)

More information about Rfast at CRAN
Permanent link

Package xgboost updated to version 0.6-2 with previous version 0.6-0 dated 2016-12-16

Title: Extreme Gradient Boosting
Description: Extreme Gradient Boosting, which is an efficient implementation of gradient boosting framework. This package is its R interface. The package includes efficient linear model solver and tree learning algorithms. The package can automatically do parallel computation on a single machine which could be more than 10 times faster than existing gradient boosting packages. It supports various objective functions, including regression, classification and ranking. The package is made to be extensible, so that users are also allowed to define their own objectives easily.
Author: Tianqi Chen <tianqi.tchen@gmail.com>, Tong He <hetong007@gmail.com>, Michael Benesty <michael@benesty.fr>, Vadim Khotilovich <khotilovich@gmail.com>, Yuan Tang <terrytangyuan@gmail.com>
Maintainer: Tong He <hetong007@gmail.com>

Diff between xgboost versions 0.6-0 dated 2016-12-16 and 0.6-2 dated 2016-12-18

 xgboost-0.6-0/xgboost/src/Makevars                      |only
 xgboost-0.6-2/xgboost/DESCRIPTION                       |    6 
 xgboost-0.6-2/xgboost/MD5                               |   15 
 xgboost-0.6-2/xgboost/build/vignette.rds                |binary
 xgboost-0.6-2/xgboost/cleanup                           |only
 xgboost-0.6-2/xgboost/configure                         |only
 xgboost-0.6-2/xgboost/configure.ac                      |only
 xgboost-0.6-2/xgboost/inst/doc/discoverYourData.html    |  681 ++++++++----
 xgboost-0.6-2/xgboost/inst/doc/xgboost.pdf              |binary
 xgboost-0.6-2/xgboost/inst/doc/xgboostPresentation.html |  848 ++++++++++------
 xgboost-0.6-2/xgboost/src/Makevars.in                   |only
 11 files changed, 1014 insertions(+), 536 deletions(-)

More information about xgboost at CRAN
Permanent link

Package StanHeaders updated to version 2.13.1 with previous version 2.12.0-1 dated 2016-11-20

Title: C++ Header Files for Stan
Description: The C++ header files of the Stan project are provided by this package, but it contains no R code, vignettes, or function documentation. There is a shared object containing part of the 'CVODES' library, but it is not accessible from R. 'StanHeaders' is only useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The 'rstan' package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.
Author: Ben Goodrich [cre, aut], Joshua Pritikin [ctb], Andrew Gelman [aut], Bob Carpenter [aut], Matt Hoffman [aut], Daniel Lee [aut], Michael Betancourt [aut], Marcus Brubaker [aut], Jiqiang Guo [aut], Peter Li [aut], Allen Riddell [aut], Marco Inacio [aut], Mitzi Morris [aut], Jeffrey Arnold [aut], Rob Goedman [aut], Brian Lau [aut], Rob Trangucci [aut], Jonah Gabry [aut], Alp Kucukelbir [aut], Robert Grant [aut], Dustin Tran [aut], Michael Malecki [aut], Yuanjun Gao [aut], Trustees of Columbia University [cph], Lawrence Livermore National Security [cph] (CVODES), The Regents of the University of California [cph] (CVODES), Southern Methodist University [cph] (CVODES)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>

Diff between StanHeaders versions 2.12.0-1 dated 2016-11-20 and 2.13.1 dated 2016-12-18

 StanHeaders-2.12.0-1/StanHeaders/inst/include/src/stan/model/util.hpp                                   |only
 StanHeaders-2.12.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/abs.hpp                            |only
 StanHeaders-2.12.0-1/StanHeaders/src/cvodes/src/nvec_openmp                                             |only
 StanHeaders-2.12.0-1/StanHeaders/src/cvodes/src/nvec_par                                                |only
 StanHeaders-2.12.0-1/StanHeaders/src/cvodes/src/nvec_pthreads                                           |only
 StanHeaders-2.13.1/StanHeaders/DESCRIPTION                                                              |   10 
 StanHeaders-2.13.1/StanHeaders/MD5                                                                      |  793 +++++----
 StanHeaders-2.13.1/StanHeaders/inst/CITATION                                                            |   21 
 StanHeaders-2.13.1/StanHeaders/inst/include/cvodes/cvodes_klu.h                                         |    8 
 StanHeaders-2.13.1/StanHeaders/inst/include/nvector/nvector_openmp.h                                    |   16 
 StanHeaders-2.13.1/StanHeaders/inst/include/nvector/nvector_parallel.h                                  |   43 
 StanHeaders-2.13.1/StanHeaders/inst/include/nvector/nvector_parhyp.h                                    |only
 StanHeaders-2.13.1/StanHeaders/inst/include/nvector/nvector_petsc.h                                     |only
 StanHeaders-2.13.1/StanHeaders/inst/include/nvector/nvector_pthreads.h                                  |   16 
 StanHeaders-2.13.1/StanHeaders/inst/include/nvector/nvector_serial.h                                    |   16 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/command/stanc_helper.hpp                           |   52 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/ast.hpp                                       |   94 +
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/ast_def.cpp                                   |  304 +++
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/compiler.hpp                                  |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/function_signatures.h                         |  105 -
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/generator.hpp                                 |  777 +++++----
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/expression_grammar_def.hpp           |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/functions_grammar.hpp                |    3 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/functions_grammar_def.hpp            |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/indexes_grammar_def.hpp              |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/program_grammar.hpp                  |    3 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/program_grammar_def.hpp              |    5 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/semantic_actions.hpp                 |   41 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/semantic_actions_def.cpp             |  231 +-
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/statement_grammar_def.hpp            |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/term_grammar_def.hpp                 |   41 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/var_decls_grammar.hpp                |   21 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/var_decls_grammar_def.hpp            |  127 -
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/parser.hpp                                    |    5 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp         |    3 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/finite_diff_grad.hpp                         |only
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/grad_hess_log_prob.hpp                       |only
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/grad_tr_mat_times_hessian.hpp                |only
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/gradient.hpp                                 |only
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/gradient_dot_vector.hpp                      |only
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/hessian.hpp                                  |only
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/hessian_times_vector.hpp                     |only
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/log_prob_grad.hpp                            |only
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/log_prob_propto.hpp                          |only
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/model_functional.hpp                         |only
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/test_gradients.hpp                           |only
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/optimization/bfgs.hpp                              |    3 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/optimization/newton.hpp                            |    3 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/services/init/initialize_state.hpp                 |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/variational/advi.hpp                               |    1 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/variational/families/normal_fullrank.hpp           |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/variational/families/normal_meanfield.hpp          |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/version.hpp                                        |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/core/fvar.hpp                                 |   79 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/core/operator_addition.hpp                    |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/core/operator_division.hpp                    |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/core/operator_subtraction.hpp                 |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/mat/fun/Eigen_NumTraits.hpp                   |   46 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/mat/fun/determinant.hpp                       |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/mat/fun/divide.hpp                            |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/mat/fun/multiply.hpp                          |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal.hpp                                      |    3 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/Phi_approx.hpp                       |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/acosh.hpp                            |    3 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/asinh.hpp                            |    3 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/atan2.hpp                            |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/atanh.hpp                            |   13 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/binary_log_loss.hpp                  |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/binomial_coefficient_log.hpp         |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/cbrt.hpp                             |   15 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/digamma.hpp                          |   13 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/erf.hpp                              |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/erfc.hpp                             |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/expm1.hpp                            |    3 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/falling_factorial.hpp                |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fdim.hpp                             |   56 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fma.hpp                              |    9 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmax.hpp                             |   34 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmin.hpp                             |    9 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmod.hpp                             |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/gamma_p.hpp                          |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/gamma_q.hpp                          |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/hypot.hpp                            |   55 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_logit.hpp                        |   12 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/lbeta.hpp                            |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/lgamma.hpp                           |   22 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m.hpp                            |    9 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m_exp.hpp                        |   18 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m_inv_logit.hpp                  |   16 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1p.hpp                            |   12 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log2.hpp                             |   12 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_diff_exp.hpp                     |   12 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_falling_factorial.hpp            |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_mix.hpp                          |   12 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_rising_factorial.hpp             |   27 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_sum_exp.hpp                      |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/multiply_log.hpp                     |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/owens_t.hpp                          |   29 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/pow.hpp                              |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/rising_factorial.hpp                 |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/round.hpp                            |   20 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/tgamma.hpp                           |   15 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/trigamma.hpp                         |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/trunc.hpp                            |   11 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/meta/ad_promotable.hpp                   |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/memory/stack_alloc.hpp                            |   19 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/mix/mat.hpp                                       |   12 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/mix/mat/functor/finite_diff_grad_hessian.hpp      |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/mix/scal.hpp                                      |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/arr/err/check_matching_sizes.hpp             |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/arr/err/check_nonzero_size.hpp               |    9 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/arr/err/check_ordered.hpp                    |   10 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/arr/fun/fill.hpp                             |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/arr/fun/scaled_add.hpp                       |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/arr/functor/coupled_ode_observer.hpp         |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp           |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat.hpp                                      |   67 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_cholesky_factor.hpp            |   21 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_cholesky_factor_corr.hpp       |   22 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_column_index.hpp               |   16 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_corr_matrix.hpp                |   10 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_cov_matrix.hpp                 |   14 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_ldlt_factor.hpp                |    9 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_lower_triangular.hpp           |   15 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_matching_dims.hpp              |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_multiplicable.hpp              |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_ordered.hpp                    |   10 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_pos_definite.hpp               |   19 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_pos_semidefinite.hpp           |   15 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_positive_ordered.hpp           |   14 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_range.hpp                      |   38 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_row_index.hpp                  |   14 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_simplex.hpp                    |    8 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_spsd_matrix.hpp                |   15 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_square.hpp                     |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_std_vector_index.hpp           |    8 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_symmetric.hpp                  |   17 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_unit_vector.hpp                |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_vector.hpp                     |   13 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/LDLT_factor.hpp                      |   35 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/MatrixExponential.h                  |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/Phi_approx.hpp                       |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/acosh.hpp                            |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/asinh.hpp                            |   17 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/atanh.hpp                            |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_exp_quad.hpp                     |   26 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/erf.hpp                              |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/exp2.hpp                             |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/fabs.hpp                             |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/lgamma.hpp                           |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/log1m_inv_logit.hpp                  |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/log1p.hpp                            |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/log2.hpp                             |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/log_inv_logit.hpp                    |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/logit.hpp                            |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/make_nu.hpp                          |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp.hpp                       |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp                   |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_pade.hpp                  |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/read_corr_L.hpp                      |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/read_corr_matrix.hpp                 |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/round.hpp                            |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/trigamma.hpp                         |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/trunc.hpp                            |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_gradient.hpp         |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_hessian.hpp          |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_log.hpp                 |   19 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/gaussian_dlm_obs_log.hpp            |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/inv_wishart_rng.hpp                 |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_cholesky_rng.hpp           |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_log.hpp                    |    8 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_log.hpp       |    1 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_prec_log.hpp           |    1 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_rng.hpp             |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/multinomial_rng.hpp                 |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_rng.hpp            |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/wishart_log.hpp                     |   10 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal.hpp                                     |   19 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_bounded.hpp                   |   18 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_consistent_size.hpp           |   11 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_consistent_sizes.hpp          |   45 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_equal.hpp                     |   20 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_finite.hpp                    |   13 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_greater.hpp                   |   20 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_greater_or_equal.hpp          |   20 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_less.hpp                      |   13 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_less_or_equal.hpp             |   17 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_nonnegative.hpp               |   14 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_not_nan.hpp                   |   14 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_positive.hpp                  |   14 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_positive_finite.hpp           |    8 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_positive_size.hpp             |    8 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_size_match.hpp                |   16 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/domain_error_vec.hpp                |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/invalid_argument_vec.hpp            |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/out_of_range.hpp                    |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/Phi.hpp                             |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/Phi_approx.hpp                      |   19 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/acosh.hpp                           |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/asinh.hpp                           |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/atanh.hpp                           |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/bessel_first_kind.hpp               |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/bessel_second_kind.hpp              |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/binary_log_loss.hpp                 |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/boost_policy.hpp                    |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/cbrt.hpp                            |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/choose.hpp                          |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/digamma.hpp                         |   15 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/divide.hpp                          |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/erf.hpp                             |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/erfc.hpp                            |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/exp2.hpp                            |   23 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/expm1.hpp                           |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/fdim.hpp                            |   25 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/fma.hpp                             |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/fmax.hpp                            |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/fmin.hpp                            |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_reg_inc_beta.hpp               |   28 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/hypot.hpp                           |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/ibeta.hpp                           |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv.hpp                             |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_cloglog.hpp                     |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_logit.hpp                       |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_sqrt.hpp                        |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_square.hpp                      |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_inf.hpp                          |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/ldexp.hpp                           |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/lgamma.hpp                          |   22 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/lmgamma.hpp                         |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m.hpp                           |   10 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m_exp.hpp                       |   20 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m_inv_logit.hpp                 |   26 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1p.hpp                           |   50 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1p_exp.hpp                       |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log2.hpp                            |   30 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_falling_factorial.hpp           |   20 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_inv_logit.hpp                   |   23 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_rising_factorial.hpp            |   20 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/logit.hpp                           |   23 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/modified_bessel_first_kind.hpp      |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/modified_bessel_second_kind.hpp     |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/modulus.hpp                         |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/owens_t.hpp                         |   10 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/round.hpp                           |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/square.hpp                          |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/tgamma.hpp                          |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/trigamma.hpp                        |   91 -
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/trunc.hpp                           |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/value_of.hpp                        |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/value_of_rec.hpp                    |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/meta/ad_promotable.hpp                  |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_rng.hpp            |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_rng.hpp                  |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_rng.hpp              |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_ccdf_log.hpp                  |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_cdf_log.hpp                   |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_rng.hpp                       |   39 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_rng.hpp                   |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_ccdf_log.hpp                |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_cdf_log.hpp                 |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_rng.hpp                     |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_rng.hpp                 |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_rng.hpp         |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_rng.hpp             |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_rng.hpp                |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_rng.hpp                    |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_rng.hpp                      |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_rng.hpp                     |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_rng.hpp             |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_cdf.hpp                  |    8 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_cdf_log.hpp              |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_rng.hpp                  |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_ccdf_log.hpp              |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_rng.hpp                   |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_rng.hpp                  |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_ccdf_log.hpp        |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_cdf.hpp             |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_cdf_log.hpp         |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_log.hpp         |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_rng.hpp         |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_rng.hpp             |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_rng.hpp               |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_rng.hpp                     |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_rng.hpp                     |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_rng.hpp              |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_ccdf_log.hpp               |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_cdf.hpp                    |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_cdf_log.hpp                |    3 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log.hpp                    |    3 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_log.hpp                |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_rng.hpp                |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_rng.hpp                    |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_rng.hpp                   |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_ccdf_log.hpp |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_cdf.hpp      |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_cdf_log.hpp  |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_rng.hpp      |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_log.hpp                |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_rng.hpp                |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_rng.hpp                  |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_rng.hpp                    |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_rng.hpp                  |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_rng.hpp                    |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_addition.hpp                    |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_divide_equal.hpp                |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_division.hpp                    |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_equal.hpp                       |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_greater_than.hpp                |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_greater_than_or_equal.hpp       |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_less_than.hpp                   |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_less_than_or_equal.hpp          |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_minus_equal.hpp                 |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_multiplication.hpp              |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_multiply_equal.hpp              |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_not_equal.hpp                   |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_plus_equal.hpp                  |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_subtraction.hpp                 |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/precomputed_gradients.hpp                |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/var.hpp                                  |   11 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/vari.hpp                                 |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat.hpp                                       |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp                   |  237 ++
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/fun/LDLT_factor.hpp                       |   27 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/fun/cholesky_decompose.hpp                |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/fun/cov_exp_quad.hpp                      |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_inv_quad_form_ldlt.hpp          |    8 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/fun/unit_vector_constrain.hpp             |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/functor/cvodes_ode_data.hpp               |    8 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/functor/integrate_ode_bdf.hpp             |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/functor/ode_system.hpp                    |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal.hpp                                      |    5 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/acosh.hpp                            |   12 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/asinh.hpp                            |   15 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/atan2.hpp                            |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/atanh.hpp                            |   27 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/binary_log_loss.hpp                  |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/cbrt.hpp                             |   10 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/digamma.hpp                          |    1 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/erf.hpp                              |   12 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/erfc.hpp                             |   14 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/exp2.hpp                             |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/expm1.hpp                            |   14 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/falling_factorial.hpp                |   14 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/fdim.hpp                             |   81 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/fma.hpp                              |   71 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/fmod.hpp                             |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/gamma_p.hpp                          |   14 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/gamma_q.hpp                          |   11 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/hypot.hpp                            |   28 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/ibeta.hpp                            |   12 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/if_else.hpp                          |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/lgamma.hpp                           |   10 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/log1m.hpp                            |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/log1m_exp.hpp                        |   30 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/log1m_inv_logit.hpp                  |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/log1p.hpp                            |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/log_diff_exp.hpp                     |   49 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/log_falling_factorial.hpp            |   16 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/log_inv_logit.hpp                    |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/logit.hpp                            |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/multiply_log.hpp                     |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/owens_t.hpp                          |   19 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/pow.hpp                              |    4 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/rising_factorial.hpp                 |   14 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/round.hpp                            |    6 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/tgamma.hpp                           |   12 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/trigamma.hpp                         |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/trunc.hpp                            |    9 
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/meta/ad_promotable.hpp                   |only
 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/version.hpp                                       |    2 
 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_band.h                                    |   20 
 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_config.h                                  |    7 
 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_config.in                                 |    5 
 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_dense.h                                   |   20 
 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_direct.h                                  |   14 
 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_klu_impl.h                                |    5 
 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_nvector.h                                 |   29 
 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_sparse.h                                  |   93 -
 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_superlumt_impl.h                          |    9 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/LICENSE                                                       |    8 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/cvodes/cvodes_klu.h                                   |    8 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/nvector/nvector_openmp.h                              |   16 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/nvector/nvector_parallel.h                            |   43 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/nvector/nvector_parhyp.h                              |only
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/nvector/nvector_petsc.h                               |only
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/nvector/nvector_pthreads.h                            |   16 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/nvector/nvector_serial.h                              |   16 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_band.h                              |   20 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_config.h                            |    7 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_config.in                           |    5 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_dense.h                             |   20 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_direct.h                            |   14 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_klu_impl.h                          |    5 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_nvector.h                           |   29 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_sparse.h                            |   93 -
 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_superlumt_impl.h                    |    9 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/CMakeLists.txt                                     |    4 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/README                                             |  459 -----
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodea.c                                           |   22 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes.c                                           |    7 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_band.c                                      |   22 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_bandpre.c                                   |   21 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_bbdpre.c                                    |   26 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_dense.c                                     |   28 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_diag.c                                      |   10 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_direct.c                                    |   16 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_direct_impl.h                               |   19 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_impl.h                                      |   15 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_klu.c                                       |  146 +
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_lapack.c                                    |   38 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_sparse_impl.h                               |    6 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_spbcgs.c                                    |   21 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_spgmr.c                                     |   21 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_spils.c                                     |   19 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_spils_impl.h                                |   15 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_sptfqmr.c                                   |   27 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_superlumt.c                                 |   37 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/nvec_ser/README                                           |   90 -
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/nvec_ser/nvector_serial.c                                 |   27 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/sundials/README                                           |  188 --
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/sundials/sundials_direct.c                                |    3 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/sundials/sundials_nvector.c                               |   11 
 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/sundials/sundials_sparse.c                                |  829 +++++-----
 423 files changed, 4628 insertions(+), 3927 deletions(-)

More information about StanHeaders at CRAN
Permanent link

Package sparklyr updated to version 0.5 with previous version 0.4 dated 2016-09-24

Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data processing, see http://spark.apache.org. This package supports connecting to local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end, and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut, cre], Kevin Ushey [aut], JJ Allaire [aut], RStudio [cph], The Apache Software Foundation [aut, cph]
Maintainer: Javier Luraschi <javier@rstudio.com>

Diff between sparklyr versions 0.4 dated 2016-09-24 and 0.5 dated 2016-12-18

 sparklyr-0.4/sparklyr/man/copy_to.Rd                                         |only
 sparklyr-0.4/sparklyr/man/hive_context.Rd                                    |only
 sparklyr-0.4/sparklyr/man/java_context.Rd                                    |only
 sparklyr-0.4/sparklyr/man/spark_connect.Rd                                   |only
 sparklyr-0.4/sparklyr/man/spark_connection_is_open.Rd                        |only
 sparklyr-0.4/sparklyr/man/spark_context.Rd                                   |only
 sparklyr-0.4/sparklyr/man/spark_disconnect.Rd                                |only
 sparklyr-0.4/sparklyr/man/spark_session.Rd                                   |only
 sparklyr-0.4/sparklyr/tests/testthat/derby.log                               |only
 sparklyr-0.5/sparklyr/DESCRIPTION                                            |   23 
 sparklyr-0.5/sparklyr/MD5                                                    |  302 +++--
 sparklyr-0.5/sparklyr/NAMESPACE                                              |   59 +
 sparklyr-0.5/sparklyr/NEWS.md                                                |only
 sparklyr-0.5/sparklyr/R/config_spark.R                                       |   10 
 sparklyr-0.5/sparklyr/R/connection_instances.R                               |   12 
 sparklyr-0.5/sparklyr/R/connection_spark.R                                   |  145 +-
 sparklyr-0.5/sparklyr/R/connection_viewer.R                                  |    9 
 sparklyr-0.5/sparklyr/R/data_copy.R                                          |   32 
 sparklyr-0.5/sparklyr/R/data_csv.R                                           |   66 +
 sparklyr-0.5/sparklyr/R/data_interface.R                                     |  160 ++
 sparklyr-0.5/sparklyr/R/dbi_spark_table.R                                    |    2 
 sparklyr-0.5/sparklyr/R/dplyr_do.R                                           |only
 sparklyr-0.5/sparklyr/R/dplyr_spark.R                                        |   93 -
 sparklyr-0.5/sparklyr/R/dplyr_spark_connection.R                             |   11 
 sparklyr-0.5/sparklyr/R/formulas.R                                           |   30 
 sparklyr-0.5/sparklyr/R/imports.R                                            |    6 
 sparklyr-0.5/sparklyr/R/install_spark.R                                      |   57 -
 sparklyr-0.5/sparklyr/R/install_spark_versions.R                             |    2 
 sparklyr-0.5/sparklyr/R/livy_connection.R                                    |only
 sparklyr-0.5/sparklyr/R/livy_install.R                                       |only
 sparklyr-0.5/sparklyr/R/livy_invoke.R                                        |only
 sparklyr-0.5/sparklyr/R/livy_service.R                                       |only
 sparklyr-0.5/sparklyr/R/livy_sources.R                                       |only
 sparklyr-0.5/sparklyr/R/ml_alternating_least_squares.R                       |    4 
 sparklyr-0.5/sparklyr/R/ml_backwards_compatibility.R                         |   16 
 sparklyr-0.5/sparklyr/R/ml_decision_tree.R                                   |   13 
 sparklyr-0.5/sparklyr/R/ml_feature_transformation.R                          |  353 +++---
 sparklyr-0.5/sparklyr/R/ml_feature_transformation_utils.R                    |only
 sparklyr-0.5/sparklyr/R/ml_generalized_linear_regression.R                   |   16 
 sparklyr-0.5/sparklyr/R/ml_gradient_boosted_tree.R                           |   15 
 sparklyr-0.5/sparklyr/R/ml_kmeans.R                                          |   11 
 sparklyr-0.5/sparklyr/R/ml_lda.R                                             |   11 
 sparklyr-0.5/sparklyr/R/ml_linear_regression.R                               |   17 
 sparklyr-0.5/sparklyr/R/ml_logistic_regression.R                             |   17 
 sparklyr-0.5/sparklyr/R/ml_model_print_methods.R                             |   26 
 sparklyr-0.5/sparklyr/R/ml_multilayer_perceptron.R                           |   19 
 sparklyr-0.5/sparklyr/R/ml_naive_bayes.R                                     |   41 
 sparklyr-0.5/sparklyr/R/ml_one_vs_rest.R                                     |   15 
 sparklyr-0.5/sparklyr/R/ml_options.R                                         |   11 
 sparklyr-0.5/sparklyr/R/ml_pca.R                                             |    9 
 sparklyr-0.5/sparklyr/R/ml_random_forest.R                                   |   15 
 sparklyr-0.5/sparklyr/R/ml_survival_regression.R                             |   17 
 sparklyr-0.5/sparklyr/R/ml_utils.R                                           |   16 
 sparklyr-0.5/sparklyr/R/mutation.R                                           |   10 
 sparklyr-0.5/sparklyr/R/na_actions.R                                         |only
 sparklyr-0.5/sparklyr/R/precondition.R                                       |    7 
 sparklyr-0.5/sparklyr/R/reexports.R                                          |    4 
 sparklyr-0.5/sparklyr/R/sdf_interface.R                                      |  241 ++--
 sparklyr-0.5/sparklyr/R/sdf_saveload.R                                       |   44 
 sparklyr-0.5/sparklyr/R/sdf_wrapper.R                                        |   41 
 sparklyr-0.5/sparklyr/R/spark_compile.R                                      |    7 
 sparklyr-0.5/sparklyr/R/spark_connection.R                                   |  152 +-
 sparklyr-0.5/sparklyr/R/spark_dataframe.R                                    |   13 
 sparklyr-0.5/sparklyr/R/spark_deserialize.R                                  |   23 
 sparklyr-0.5/sparklyr/R/spark_extensions.R                                   |   16 
 sparklyr-0.5/sparklyr/R/spark_gateway.R                                      |only
 sparklyr-0.5/sparklyr/R/spark_hive.R                                         |    6 
 sparklyr-0.5/sparklyr/R/spark_invoke.R                                       |   62 -
 sparklyr-0.5/sparklyr/R/spark_jobj.R                                         |   73 -
 sparklyr-0.5/sparklyr/R/spark_magrittr.R                                     |    4 
 sparklyr-0.5/sparklyr/R/spark_serialize.R                                    |   20 
 sparklyr-0.5/sparklyr/R/spark_shell.R                                        |  569 ++++++----
 sparklyr-0.5/sparklyr/R/spark_version.R                                      |   44 
 sparklyr-0.5/sparklyr/R/tables_spark.R                                       |only
 sparklyr-0.5/sparklyr/R/tbl_spark.R                                          |only
 sparklyr-0.5/sparklyr/R/test_connection.R                                    |only
 sparklyr-0.5/sparklyr/R/utils.R                                              |   93 +
 sparklyr-0.5/sparklyr/R/zzz.R                                                |only
 sparklyr-0.5/sparklyr/README.md                                              |  113 +
 sparklyr-0.5/sparklyr/inst/conf/config-template.yml                          |   10 
 sparklyr-0.5/sparklyr/inst/extdata/install_spark.csv                         |   12 
 sparklyr-0.5/sparklyr/inst/java/commons-csv-1.1.jar                          |only
 sparklyr-0.5/sparklyr/inst/java/spark-csv_2.11-1.3.0.jar                     |only
 sparklyr-0.5/sparklyr/inst/java/sparklyr-1.5-2.10.jar                        |only
 sparklyr-0.5/sparklyr/inst/java/sparklyr-1.6-2.10.jar                        |binary
 sparklyr-0.5/sparklyr/inst/java/sparklyr-2.0-2.11.jar                        |binary
 sparklyr-0.5/sparklyr/inst/java/univocity-parsers-1.5.1.jar                  |only
 sparklyr-0.5/sparklyr/inst/livy                                              |only
 sparklyr-0.5/sparklyr/inst/staticdocs/index.r                                |   10 
 sparklyr-0.5/sparklyr/java/backend.scala                                     |  348 +++++-
 sparklyr-0.5/sparklyr/java/handler.scala                                     |  231 ----
 sparklyr-0.5/sparklyr/java/invoke.scala                                      |only
 sparklyr-0.5/sparklyr/java/logging.scala                                     |   10 
 sparklyr-0.5/sparklyr/java/stream.scala                                      |only
 sparklyr-0.5/sparklyr/java/tracker.scala                                     |only
 sparklyr-0.5/sparklyr/java/utils.scala                                       |   27 
 sparklyr-0.5/sparklyr/man/copy_to.spark_connection.Rd                        |only
 sparklyr-0.5/sparklyr/man/ft_binarizer.Rd                                    |   21 
 sparklyr-0.5/sparklyr/man/ft_bucketizer.Rd                                   |   10 
 sparklyr-0.5/sparklyr/man/ft_discrete_cosine_transform.Rd                    |   12 
 sparklyr-0.5/sparklyr/man/ft_elementwise_product.Rd                          |   13 
 sparklyr-0.5/sparklyr/man/ft_index_to_string.Rd                              |   10 
 sparklyr-0.5/sparklyr/man/ft_one_hot_encoder.Rd                              |   10 
 sparklyr-0.5/sparklyr/man/ft_quantile_discretizer.Rd                         |   14 
 sparklyr-0.5/sparklyr/man/ft_regex_tokenizer.Rd                              |only
 sparklyr-0.5/sparklyr/man/ft_sql_transformer.Rd                              |   15 
 sparklyr-0.5/sparklyr/man/ft_string_indexer.Rd                               |   11 
 sparklyr-0.5/sparklyr/man/ft_tokenizer.Rd                                    |only
 sparklyr-0.5/sparklyr/man/ft_vector_assembler.Rd                             |   12 
 sparklyr-0.5/sparklyr/man/invoke.Rd                                          |   32 
 sparklyr-0.5/sparklyr/man/livy_config.Rd                                     |only
 sparklyr-0.5/sparklyr/man/livy_install.Rd                                    |only
 sparklyr-0.5/sparklyr/man/livy_service.Rd                                    |only
 sparklyr-0.5/sparklyr/man/ml_als_factorization.Rd                            |    5 
 sparklyr-0.5/sparklyr/man/ml_decision_tree.Rd                                |    5 
 sparklyr-0.5/sparklyr/man/ml_generalized_linear_regression.Rd                |    5 
 sparklyr-0.5/sparklyr/man/ml_gradient_boosted_trees.Rd                       |    5 
 sparklyr-0.5/sparklyr/man/ml_kmeans.Rd                                       |    5 
 sparklyr-0.5/sparklyr/man/ml_lda.Rd                                          |    5 
 sparklyr-0.5/sparklyr/man/ml_linear_regression.Rd                            |    5 
 sparklyr-0.5/sparklyr/man/ml_logistic_regression.Rd                          |    5 
 sparklyr-0.5/sparklyr/man/ml_multilayer_perceptron.Rd                        |    5 
 sparklyr-0.5/sparklyr/man/ml_naive_bayes.Rd                                  |    5 
 sparklyr-0.5/sparklyr/man/ml_one_vs_rest.Rd                                  |    5 
 sparklyr-0.5/sparklyr/man/ml_options.Rd                                      |   10 
 sparklyr-0.5/sparklyr/man/ml_pca.Rd                                          |    5 
 sparklyr-0.5/sparklyr/man/ml_prepare_dataframe.Rd                            |    5 
 sparklyr-0.5/sparklyr/man/ml_prepare_inputs.Rd                               |    9 
 sparklyr-0.5/sparklyr/man/ml_random_forest.Rd                                |    5 
 sparklyr-0.5/sparklyr/man/ml_survival_regression.Rd                          |    5 
 sparklyr-0.5/sparklyr/man/ml_tree_feature_importance.Rd                      |    4 
 sparklyr-0.5/sparklyr/man/na.replace.Rd                                      |    2 
 sparklyr-0.5/sparklyr/man/pipe.Rd                                            |    4 
 sparklyr-0.5/sparklyr/man/reexports.Rd                                       |only
 sparklyr-0.5/sparklyr/man/register_extension.Rd                              |   16 
 sparklyr-0.5/sparklyr/man/sdf-saveload.Rd                                    |    2 
 sparklyr-0.5/sparklyr/man/sdf_copy_to.Rd                                     |   21 
 sparklyr-0.5/sparklyr/man/sdf_mutate.Rd                                      |    2 
 sparklyr-0.5/sparklyr/man/sdf_persist.Rd                                     |only
 sparklyr-0.5/sparklyr/man/sdf_quantile.Rd                                    |only
 sparklyr-0.5/sparklyr/man/sdf_schema.Rd                                      |only
 sparklyr-0.5/sparklyr/man/sdf_with_unique_id.Rd                              |    6 
 sparklyr-0.5/sparklyr/man/spark-api.Rd                                       |only
 sparklyr-0.5/sparklyr/man/spark-connections.Rd                               |only
 sparklyr-0.5/sparklyr/man/spark_compile.Rd                                   |    2 
 sparklyr-0.5/sparklyr/man/spark_connection.Rd                                |   13 
 sparklyr-0.5/sparklyr/man/spark_dataframe.Rd                                 |   13 
 sparklyr-0.5/sparklyr/man/spark_jobj.Rd                                      |   18 
 sparklyr-0.5/sparklyr/man/spark_load_table.Rd                                |only
 sparklyr-0.5/sparklyr/man/spark_log.Rd                                       |   22 
 sparklyr-0.5/sparklyr/man/spark_read_csv.Rd                                  |   63 -
 sparklyr-0.5/sparklyr/man/spark_read_json.Rd                                 |   23 
 sparklyr-0.5/sparklyr/man/spark_read_parquet.Rd                              |   23 
 sparklyr-0.5/sparklyr/man/spark_save_table.Rd                                |only
 sparklyr-0.5/sparklyr/man/spark_version.Rd                                   |   22 
 sparklyr-0.5/sparklyr/man/spark_version_from_home.Rd                         |only
 sparklyr-0.5/sparklyr/man/spark_web.Rd                                       |    4 
 sparklyr-0.5/sparklyr/man/spark_write_csv.Rd                                 |    9 
 sparklyr-0.5/sparklyr/man/spark_write_json.Rd                                |   10 
 sparklyr-0.5/sparklyr/man/spark_write_parquet.Rd                             |   10 
 sparklyr-0.5/sparklyr/man/tbl_cache.Rd                                       |   20 
 sparklyr-0.5/sparklyr/man/tbl_uncache.Rd                                     |   13 
 sparklyr-0.5/sparklyr/tests/testthat/helper-initialize.R                     |   50 
 sparklyr-0.5/sparklyr/tests/testthat/test-dplyr-do.R                         |only
 sparklyr-0.5/sparklyr/tests/testthat/test-feature-transformers.R             |only
 sparklyr-0.5/sparklyr/tests/testthat/test-install-spark.R                    |    2 
 sparklyr-0.5/sparklyr/tests/testthat/test-ml-generalized-linear-regression.R |    5 
 sparklyr-0.5/sparklyr/tests/testthat/test-ml-kmeans.R                        |    5 
 sparklyr-0.5/sparklyr/tests/testthat/test-ml-linear-regression.R             |    5 
 sparklyr-0.5/sparklyr/tests/testthat/test-ml-saveload.R                      |   26 
 sparklyr-0.5/sparklyr/tests/testthat/test-naive-bayes.R                      |only
 sparklyr-0.5/sparklyr/tests/testthat/test-read-write.R                       |only
 sparklyr-0.5/sparklyr/tests/testthat/test-serialization.R                    |   72 +
 sparklyr-0.5/sparklyr/tests/testthat/test.csv                                |only
 174 files changed, 2867 insertions(+), 1725 deletions(-)

More information about sparklyr at CRAN
Permanent link

Package rstan updated to version 2.13.2 with previous version 2.12.1 dated 2016-09-12

Title: R Interface to Stan
Description: User-facing R functions are provided to parse, compile, test, estimate, and analyze Stan models by accessing the header-only Stan library provided by the 'StanHeaders' package. The Stan project develops a probabilistic programming language that implements full Bayesian statistical inference via Markov Chain Monte Carlo, rough Bayesian inference via 'variational' approximation, and (optionally penalized) maximum likelihood estimation via optimization. In all three cases, automatic differentiation is used to quickly and accurately evaluate gradients without burdening the user with the need to derive the partial derivatives.
Author: Jiqiang Guo [aut], Jonah Gabry [aut], Ben Goodrich [cre, aut], Daniel Lee [ctb], Krzysztof Sakrejda [ctb], Trustees of Columbia University [cph], Oleg Sklyar [cph] (R/cxxfunplus.R), The R Core Team [cph] (R/pairs.R, R/dynGet.R), Jens Oehlschlaegel-Akiyoshi [cph] (R/pairs.R), Hadley Wickham [cph] (R/rtools.R), Joel de Guzman [cph] (Boost), John Fletcher [cph] (Boost), Thomas Heller [cph] (Boost), Eric Niebler [cph] (Boost)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>

Diff between rstan versions 2.12.1 dated 2016-09-12 and 2.13.2 dated 2016-12-18

 DESCRIPTION                                  |   25 
 MD5                                          |   93 +
 R/dynGet.R                                   |only
 R/expose_stan_functions.R                    |   13 
 R/git_rstan_head.R                           |    1 
 R/makefile_op.R                              |    2 
 R/misc.R                                     |   54 -
 R/pairs.R                                    |   34 
 R/plugin.R                                   |    2 
 R/rstan.R                                    |   65 -
 R/rstan_package_skeleton.R                   |   75 -
 R/rtools.R                                   |    9 
 R/stan_plot_helpers.R                        |   54 -
 R/stan_plot_options.R                        |    8 
 R/stanc.R                                    |   33 
 R/stanfit-class.R                            |   13 
 R/stanmodel-class.R                          |  103 +-
 R/sysdata.rda                                |binary
 build/vignette.rds                           |binary
 inst/CITATION                                |   45 
 inst/NEWS                                    |   28 
 inst/doc/external.R                          |only
 inst/doc/external.Rmd                        |only
 inst/doc/external.html                       |only
 inst/doc/rstan.R                             |    2 
 inst/doc/rstan.Rmd                           |    2 
 inst/doc/rstan.html                          |  158 +--
 inst/doc/stanfit-objects.Rmd                 |    4 
 inst/doc/stanfit-objects.html                |  168 +--
 inst/include/boost_not_in_BH/boost/exception |only
 inst/include/rstan/stan_fit.hpp              |    2 
 man/expose_stan_functions.Rd                 |   18 
 man/figures                                  |only
 man/read_rdump.Rd                            |    5 
 man/rstan.Rd                                 |    9 
 man/rstan.package.skeleton.Rd                |   44 
 man/stan_model.Rd                            |   13 
 man/stan_plot.Rd                             |    2 
 man/stanc.Rd                                 |   13 
 man/stanfit-class.Rd                         |    7 
 man/stanfit-method-logprob.Rd                |   24 
 man/stanfit-method-pairs.Rd                  |   15 
 man/stanfit-method-traceplot.Rd              |    9 
 src/init.cpp                                 |    4 
 src/stanc.cpp                                |    7 
 tools/stan-functions.txt                     | 1265 +++++++++++++--------------
 vignettes/besselK.hpp                        |only
 vignettes/external.Rmd                       |only
 vignettes/fib.hpp                            |only
 vignettes/rstan.Rmd                          |    2 
 vignettes/rstan.bib                          |    2 
 vignettes/stanfit-objects.Rmd                |    4 
 52 files changed, 1268 insertions(+), 1168 deletions(-)

More information about rstan at CRAN
Permanent link

Package rPref updated to version 1.2 with previous version 1.1 dated 2016-09-01

Title: Database Preferences and Skyline Computation
Description: Routines to select and visualize the maxima for a given strict partial order. This especially includes the computation of the Pareto frontier, also known as (Top-k) Skyline operator, and some generalizations (database preferences).
Author: Patrick Roocks <mail@p-roocks.de>
Maintainer: Patrick Roocks <mail@p-roocks.de>

Diff between rPref versions 1.1 dated 2016-09-01 and 1.2 dated 2016-12-18

 rPref-1.1/rPref/R/base-pref-macros.R        |only
 rPref-1.2/rPref/DESCRIPTION                 |   16 
 rPref-1.2/rPref/MD5                         |   76 -
 rPref-1.2/rPref/NAMESPACE                   |   24 
 rPref-1.2/rPref/NEWS                        |   43 
 rPref-1.2/rPref/R/RcppExports.R             |   46 
 rPref-1.2/rPref/R/base-pref-macros.r        |only
 rPref-1.2/rPref/R/base-pref.r               |   41 
 rPref-1.2/rPref/R/complex-pref.r            |   85 +
 rPref-1.2/rPref/R/general-pref.r            |   72 -
 rPref-1.2/rPref/R/pred-succ.r               |  117 ++
 rPref-1.2/rPref/R/pref-classes.r            | 1324 +++++++++++++---------------
 rPref-1.2/rPref/R/pref-eval.r               |   38 
 rPref-1.2/rPref/R/rPref.r                   |    1 
 rPref-1.2/rPref/R/show-pref.r               |   45 
 rPref-1.2/rPref/R/visualize.r               |   58 -
 rPref-1.2/rPref/inst/doc/introduction.R     |    2 
 rPref-1.2/rPref/inst/doc/introduction.Rmd   |    2 
 rPref-1.2/rPref/inst/doc/introduction.html  |    4 
 rPref-1.2/rPref/inst/doc/visualization.R    |    8 
 rPref-1.2/rPref/inst/doc/visualization.Rmd  |   14 
 rPref-1.2/rPref/inst/doc/visualization.html |   18 
 rPref-1.2/rPref/inst/test/test-algorithms.R |    2 
 rPref-1.2/rPref/inst/test/test-hasse.R      |    5 
 rPref-1.2/rPref/inst/test/test-psel.R       |    9 
 rPref-1.2/rPref/man/base_pref.Rd            |  290 +++---
 rPref-1.2/rPref/man/base_pref_macros.Rd     |  152 +--
 rPref-1.2/rPref/man/complex_pref.Rd         |   23 
 rPref-1.2/rPref/man/general_pref.Rd         |   42 
 rPref-1.2/rPref/man/plot_btg.Rd             |  292 +++---
 rPref-1.2/rPref/man/plot_front.Rd           |  102 +-
 rPref-1.2/rPref/man/pred_succ.Rd            |  194 ++--
 rPref-1.2/rPref/man/psel.Rd                 |  312 +++---
 rPref-1.2/rPref/man/rPref.Rd                |  148 +--
 rPref-1.2/rPref/man/show.pref.Rd            |   18 
 rPref-1.2/rPref/man/show.query.Rd           |  104 +-
 rPref-1.2/rPref/src/RcppExports.cpp         |   42 
 rPref-1.2/rPref/src/scalagon.cpp            |    2 
 rPref-1.2/rPref/vignettes/introduction.Rmd  |    2 
 rPref-1.2/rPref/vignettes/visualization.Rmd |   14 
 40 files changed, 1953 insertions(+), 1834 deletions(-)

More information about rPref at CRAN
Permanent link

Package RcppArmadillo updated to version 0.7.600.1.0 with previous version 0.7.500.0.0 dated 2016-10-22

Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the header files from the templated 'Armadillo' library. Thus users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that Armadillo requires a fairly recent compiler; for the g++ family at least version 4.6.* is required.
Author: Dirk Eddelbuettel, Romain Francois and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppArmadillo versions 0.7.500.0.0 dated 2016-10-22 and 0.7.600.1.0 dated 2016-12-18

 ChangeLog                                                        |   29 +
 DESCRIPTION                                                      |    8 
 MD5                                                              |   76 ++--
 R/RcppExports.R                                                  |    2 
 build/vignette.rds                                               |binary
 inst/NEWS.Rd                                                     |   21 +
 inst/doc/RcppArmadillo-intro.pdf                                 |binary
 inst/doc/RcppArmadillo-unitTests.pdf                             |binary
 inst/include/RcppArmadilloExtensions/sample.h                    |   10 
 inst/include/armadillo                                           |    4 
 inst/include/armadillo_bits/Glue_bones.hpp                       |   10 
 inst/include/armadillo_bits/arma_cmath.hpp                       |  183 +++++++++-
 inst/include/armadillo_bits/arma_forward.hpp                     |    3 
 inst/include/armadillo_bits/arma_rng_cxx11.hpp                   |    6 
 inst/include/armadillo_bits/arma_version.hpp                     |    6 
 inst/include/armadillo_bits/auxlib_meat.hpp                      |   79 ++--
 inst/include/armadillo_bits/compiler_setup.hpp                   |   16 
 inst/include/armadillo_bits/diskio_meat.hpp                      |    2 
 inst/include/armadillo_bits/eop_core_bones.hpp                   |    1 
 inst/include/armadillo_bits/eop_core_meat.hpp                    |    3 
 inst/include/armadillo_bits/fn_elem.hpp                          |  151 ++++++++
 inst/include/armadillo_bits/fn_trig.hpp                          |  146 +++++--
 inst/include/armadillo_bits/fn_trunc_exp.hpp                     |    6 
 inst/include/armadillo_bits/fn_trunc_log.hpp                     |    6 
 inst/include/armadillo_bits/glue_atan2_bones.hpp                 |only
 inst/include/armadillo_bits/glue_atan2_meat.hpp                  |only
 inst/include/armadillo_bits/glue_hypot_bones.hpp                 |only
 inst/include/armadillo_bits/glue_hypot_meat.hpp                  |only
 inst/include/armadillo_bits/mtOp_bones.hpp                       |    2 
 inst/include/armadillo_bits/newarp_DoubleShiftQR_meat.hpp        |   19 -
 inst/include/armadillo_bits/newarp_GenEigsSolver_bones.hpp       |   12 
 inst/include/armadillo_bits/newarp_GenEigsSolver_meat.hpp        |   74 ++--
 inst/include/armadillo_bits/newarp_SymEigsSolver_bones.hpp       |   12 
 inst/include/armadillo_bits/newarp_SymEigsSolver_meat.hpp        |   74 ++--
 inst/include/armadillo_bits/newarp_UpperHessenbergEigen_meat.hpp |    4 
 inst/include/armadillo_bits/newarp_UpperHessenbergQR_meat.hpp    |    4 
 inst/include/armadillo_bits/op_misc_bones.hpp                    |   15 
 inst/include/armadillo_bits/op_misc_meat.hpp                     |   90 ++++
 inst/include/armadillo_bits/spop_misc_bones.hpp                  |   72 +++
 inst/include/armadillo_bits/spop_misc_meat.hpp                   |  163 ++++++++
 src/RcppExports.cpp                                              |   46 --
 41 files changed, 1110 insertions(+), 245 deletions(-)

More information about RcppArmadillo at CRAN
Permanent link

Package photobiology updated to version 0.9.13 with previous version 0.9.12 dated 2016-10-21

Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use in photobiology and radiation meteorology and climatology. Calculation of effective (weighted) and not-weighted irradiances/doses, fluence rates, transmittance, reflectance, absorptance, absorbance and diverse ratios and other derived quantities from spectral data. Local maxima and minima. Conversion between energy- and photon-based units. Wavelength interpolation. Astronomical calculations related solar angles and day length. Colours and vision.
Author: Pedro J. Aphalo [aut, cre], Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>

Diff between photobiology versions 0.9.12 dated 2016-10-21 and 0.9.13 dated 2016-12-18

 DESCRIPTION                       |   21 +++----
 MD5                               |   96 +++++++++++++++++---------------
 NAMESPACE                         |    7 ++
 NEWS                              |   18 +++++-
 R/auto.hinges.r                   |    2 
 R/copy.attr.R                     |   18 +++---
 R/d2.fel.data.r                   |only
 R/d2.spectrum.r                   |   44 +++++----------
 R/fel.spectrum.r                  |   18 ++----
 R/irradiance.r                    |    2 
 R/spct.absorbance.R               |    2 
 R/spct.absorptance.R              |    2 
 R/spct.classes.r                  |   28 ++++++---
 R/spct.conversion.R               |   73 +++++++++++++++++++++---
 R/spct.irrad.r                    |    2 
 R/spct.peaks.r                    |    9 ++-
 R/spct.ratios.R                   |   16 ++---
 R/spct.reflectance.r              |    2 
 R/spct.response.R                 |    2 
 R/spct.summaries.r                |   26 ++++++++
 R/spct.tag.r                      |    2 
 R/spct.transmittance.r            |    2 
 R/spct.trim.r                     |   46 +++++++++++++++
 R/sun.calc.r                      |   55 ++++++++++++++++++
 build/vignette.rds                |binary
 data/D2-FEL-constants.rda         |only
 inst/CITATION                     |    2 
 inst/doc/userguide-astronomy.Rmd  |   14 ++++
 inst/doc/userguide-astronomy.html |   32 +++++-----
 inst/doc/userguide-intro.Rmd      |    2 
 inst/doc/userguide-intro.html     |    8 +-
 inst/doc/userguide-radiation.R    |    6 ++
 inst/doc/userguide-radiation.Rmd  |   22 ++++++-
 inst/doc/userguide-radiation.html |  111 ++++++++++++++++++++++++++++++++++++--
 inst/staticdocs/index.r           |    4 +
 man/D2.UV586.Rd                   |only
 man/D2.UV653.Rd                   |only
 man/D2.UV654.Rd                   |only
 man/D2_spectrum.Rd                |    8 +-
 man/FEL.BN.9101.165.Rd            |only
 man/FEL_spectrum.Rd               |   10 +--
 man/copy_attributes.Rd            |    4 -
 man/cps2irrad.Rd                  |    8 ++
 man/e_ratio.Rd                    |    9 +--
 man/eq_ratio.Rd                   |    9 +--
 man/q_ratio.Rd                    |    9 +--
 man/qe_ratio.Rd                   |    9 +--
 man/sun_angles.Rd                 |   15 +++++
 man/trim_spct.Rd                  |   10 +++
 vignettes/userguide-astronomy.Rmd |   14 ++++
 vignettes/userguide-intro.Rmd     |    2 
 vignettes/userguide-radiation.Rmd |   22 ++++++-
 52 files changed, 616 insertions(+), 207 deletions(-)

More information about photobiology at CRAN
Permanent link

Package pbdZMQ updated to version 0.2-5 with previous version 0.2-4 dated 2016-09-22

Title: Programming with Big Data -- Interface to ZeroMQ
Description: 'ZeroMQ' is a well-known library for high-performance asynchronous messaging in scalable, distributed applications. This package provides high level R wrapper functions to easily utilize 'ZeroMQ'. We mainly focus on interactive client/server programming frameworks. For convenience, a minimal 'ZeroMQ' library (4.1.0 rc1) is shipped with 'pbdZMQ', which can be used if no system installation of 'ZeroMQ' is available. A few wrapper functions compatible with 'rzmq' are also provided.
Author: Wei-Chen Chen [aut, cre], Drew Schmidt [aut], Christian Heckendorf [aut] (file transfer), George Ostrouchov [aut] (Mac OSX), Whit Armstrong [ctb] (some functions are modified from the rzmq package for backwards compatibility), Brian Ripley [ctb] (C code of shellexec, and Solaris), R Core team [ctb] (some functions are modified from the R source code), Philipp A. [ctb] (Fedora)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>

Diff between pbdZMQ versions 0.2-4 dated 2016-09-22 and 0.2-5 dated 2016-12-18

 ChangeLog                                 |   20 ++++++++++++++++++++
 DESCRIPTION                               |   11 ++++++-----
 MD5                                       |   18 +++++++++---------
 inst/doc/pbdZMQ-guide.Rnw                 |    8 ++------
 inst/doc/pbdZMQ-guide.pdf                 |binary
 src/zmqsrc/src/curve_client.cpp           |    6 ++++--
 src/zmqsrc/src/curve_server.cpp           |    6 ++++--
 vignettes/pbdZMQ-guide.Rnw                |    8 ++------
 vignettes/pbdZMQ-include/01-copyright.tex |    2 +-
 vignettes/pbdZMQ-include/05-cs.tex        |    2 +-
 10 files changed, 49 insertions(+), 32 deletions(-)

More information about pbdZMQ at CRAN
Permanent link

New package magicfor with initial version 0.1.0
Package: magicfor
Type: Package
Version: 0.1.0
Title: Magic Functions to Obtain Results from for Loops
Description: Magic functions to obtain results from for loops.
Authors@R: c(person("Koji", "Makiyama", email = "hoxo.smile@gmail.com", role = c("cre", "aut")))
URL: https://github.com/hoxo-m/magicfor
BugReports: https://github.com/hoxo-m/magicfor/issues
License: MIT + file LICENSE
Imports: utils
Suggests: testthat, knitr, rmarkdown
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-12-18 06:34:22 UTC; makiyama
Author: Koji Makiyama [cre, aut]
Maintainer: Koji Makiyama <hoxo.smile@gmail.com>
Repository: CRAN
Date/Publication: 2016-12-18 11:22:59

More information about magicfor at CRAN
Permanent link

Package desplot updated to version 1.1 with previous version 1.0 dated 2015-12-14

Title: Plotting Field Plans for Agricultural Experiments
Description: A function for plotting maps of agricultural field experiments that are laid out in grids.
Author: Kevin Wright [aut, cre]
Maintainer: Kevin Wright <kw.stat@gmail.com>

Diff between desplot versions 1.0 dated 2015-12-14 and 1.1 dated 2016-12-18

 desplot-1.0/desplot/inst/doc/desplot.R             |only
 desplot-1.0/desplot/inst/doc/desplot.Rmd           |only
 desplot-1.0/desplot/inst/doc/desplot.html          |only
 desplot-1.0/desplot/vignettes/desplot.Rmd          |only
 desplot-1.1/desplot/DESCRIPTION                    |   10 
 desplot-1.1/desplot/MD5                            |   25 
 desplot-1.1/desplot/NAMESPACE                      |    1 
 desplot-1.1/desplot/R/desplot.r                    |  542 ++++++++++-----------
 desplot-1.1/desplot/build/vignette.rds             |binary
 desplot-1.1/desplot/inst/doc/desplot_examples.R    |only
 desplot-1.1/desplot/inst/doc/desplot_examples.Rmd  |only
 desplot-1.1/desplot/inst/doc/desplot_examples.html |only
 desplot-1.1/desplot/man/RedGrayBlue.Rd             |   10 
 desplot-1.1/desplot/man/desplot.Rd                 |   90 ++-
 desplot-1.1/desplot/man/panel.outlinelevelplot.Rd  |    6 
 desplot-1.1/desplot/tests                          |only
 desplot-1.1/desplot/vignettes/desplot.bib          |   10 
 desplot-1.1/desplot/vignettes/desplot_examples.Rmd |only
 18 files changed, 350 insertions(+), 344 deletions(-)

More information about desplot at CRAN
Permanent link

Package cobalt updated to version 1.3.1 with previous version 1.3.0 dated 2016-10-23

Title: Covariate Balance Tables and Plots
Description: Generate balance tables and plots for covariates of groups preprocessed through matching, weighting or subclassification, for example, using propensity scores. Includes integration with 'MatchIt', 'twang', 'Matching', 'CBPS', and 'ebal' for assessing balance on the output of their preprocessing functions. Users can also specify data for balance assessment not generated through the above packages.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah@unc.edu>

Diff between cobalt versions 1.3.0 dated 2016-10-23 and 1.3.1 dated 2016-12-18

 cobalt-1.3.0/cobalt/R/Under_construction      |only
 cobalt-1.3.0/cobalt/R/f.build.R               |only
 cobalt-1.3.1/cobalt/DESCRIPTION               |   16 
 cobalt-1.3.1/cobalt/MD5                       |   49 +-
 cobalt-1.3.1/cobalt/NAMESPACE                 |    4 
 cobalt-1.3.1/cobalt/R/bal.plot.R              |    7 
 cobalt-1.3.1/cobalt/R/bal.tab.R               |  225 ++++++++---
 cobalt-1.3.1/cobalt/R/do_not_include          |only
 cobalt-1.3.1/cobalt/R/get.C.R                 |    9 
 cobalt-1.3.1/cobalt/R/love.plot.R             |  511 ++++++++++++++------------
 cobalt-1.3.1/cobalt/R/print.bal.tab.R         |   18 
 cobalt-1.3.1/cobalt/R/utilities.R             |only
 cobalt-1.3.1/cobalt/R/x2base.R                |  227 ++++++++++-
 cobalt-1.3.1/cobalt/inst/doc/cobalt.R         |   48 +-
 cobalt-1.3.1/cobalt/inst/doc/cobalt.Rmd       |   99 +++--
 cobalt-1.3.1/cobalt/inst/doc/cobalt.html      |  160 ++++----
 cobalt-1.3.1/cobalt/man/bal.tab.CBPS.Rd       |    4 
 cobalt-1.3.1/cobalt/man/bal.tab.Match.Rd      |    4 
 cobalt-1.3.1/cobalt/man/bal.tab.Rd            |    9 
 cobalt-1.3.1/cobalt/man/bal.tab.df.formula.Rd |   55 +-
 cobalt-1.3.1/cobalt/man/bal.tab.ebalance.Rd   |only
 cobalt-1.3.1/cobalt/man/bal.tab.matchit.Rd    |    4 
 cobalt-1.3.1/cobalt/man/bal.tab.ps.Rd         |    4 
 cobalt-1.3.1/cobalt/man/love.plot.Rd          |   15 
 cobalt-1.3.1/cobalt/vignettes/cobalt.Rmd      |   99 +++--
 25 files changed, 1006 insertions(+), 561 deletions(-)

More information about cobalt at CRAN
Permanent link

New package acrt with initial version 1.0
Package: acrt
Type: Package
Title: Autocorrelation Robust Testing
Version: 1.0
Date: 2016-12-05
Author: David Preinerstorfer
Maintainer: David Preinerstorfer <david.preinerstorfer@econ.au.dk>
Description: Functions for testing affine hypotheses on the regression coefficient vector in regression models with autocorrelated errors.
License: GPL-2
Imports: methods, stats, sandwich, Rcpp
LinkingTo: Rcpp, RcppEigen
NeedsCompilation: yes
Packaged: 2016-12-17 11:59:28 UTC; au563869
Repository: CRAN
Date/Publication: 2016-12-18 11:22:53

More information about acrt at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.