Title: Simple Imputation
Description: Easy to use interfaces to a number of imputation methods
that fit in the not-a-pipe operator of the 'magrittr' package.
Author: Mark van der Loo [aut, cre]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between simputation versions 0.1.0 dated 2016-09-09 and 0.2.0 dated 2016-12-30
DESCRIPTION | 10 +-- MD5 | 25 +++---- NEWS |only R/hotdeck.R | 155 +++++++++++++++++++++++++++++++++++++++++++---- R/linearmodels.R | 47 ++++++++++++-- R/treemodels.R | 23 ++++-- R/utils.R | 12 ++- build/vignette.rds |binary inst/doc/intro.R | 10 +++ inst/doc/intro.Rmd | 20 +++++- inst/doc/intro.html | 30 ++++++--- man/impute_.Rd | 99 +++++++++++++++++++++++++++--- tests/testthat/test_hd.R | 36 ++++++++++ vignettes/intro.Rmd | 20 +++++- 14 files changed, 416 insertions(+), 71 deletions(-)
Title: Measures of Risk for the Compound Poisson Risk Process with
Diffusion
Description: Based on the compound Poisson risk process that is perturbed by
a Brownian motion, saddlepoint approximations to some measures of risk are
provided. Various approximation methods for the probability of ruin are
also included. Furthermore, exact values of both the risk measures as well
as the probability of ruin are available if the individual claims follow
a hypo-exponential distribution (i. e., if it can be represented as a sum
of independent exponentially distributed random variables with different
rate parameters). For more details see Gatto and Baumgartner (2014)
<doi:10.1007/s11009-012-9316-5>.
Author: Benjamin Baumgartner [aut, cre],
Riccardo Gatto [ctb, ths],
Sebastian Szugat [ctb]
Maintainer: Benjamin Baumgartner <benjamin@baumgrt.com>
Diff between sdprisk versions 1.1-3 dated 2015-05-14 and 1.1-5 dated 2016-12-30
DESCRIPTION | 27 ++++++++++++++------------- MD5 | 2 +- 2 files changed, 15 insertions(+), 14 deletions(-)
Title: Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH pubkey parsers.
Supports RSA, DSA and EC curves P-256, P-384 and P-521. Cryptographic signatures
can either be created and verified manually or via x509 certificates. AES can be
used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric (public
key) encryption or EC for Diffie Hellman. High-level envelope functions combine
RSA and AES for encrypting arbitrary sized data. Other utilities include key
generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure
random number generator, and 'bignum' math methods for manually performing
crypto calculations on large multibyte integers.
Author: Jeroen Ooms [cre, aut],
Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between openssl versions 0.9.5 dated 2016-10-28 and 0.9.6 dated 2016-12-30
openssl-0.9.5/openssl/tests/testthat/test_pkcs12.R |only openssl-0.9.6/openssl/DESCRIPTION | 6 openssl-0.9.6/openssl/MD5 | 55 openssl-0.9.6/openssl/NAMESPACE | 11 openssl-0.9.6/openssl/NEWS | 10 openssl-0.9.6/openssl/R/hash.R | 15 openssl-0.9.6/openssl/R/pkcs12.R | 64 openssl-0.9.6/openssl/R/read.R | 8 openssl-0.9.6/openssl/build/vignette.rds |binary openssl-0.9.6/openssl/cleanup |only openssl-0.9.6/openssl/configure | 6 openssl-0.9.6/openssl/inst/cacert.pem | 680 +++++----- openssl-0.9.6/openssl/inst/doc/bignum.R | 2 openssl-0.9.6/openssl/inst/doc/bignum.Rmd | 2 openssl-0.9.6/openssl/inst/doc/bignum.html | 47 openssl-0.9.6/openssl/inst/doc/crypto_hashing.html | 30 openssl-0.9.6/openssl/inst/doc/keys.html | 55 openssl-0.9.6/openssl/inst/doc/secure_rng.html | 31 openssl-0.9.6/openssl/man/hash.Rd | 9 openssl-0.9.6/openssl/man/pkcs12.Rd | 40 openssl-0.9.6/openssl/src/Makevars.in | 5 openssl-0.9.6/openssl/src/Makevars.win | 6 openssl-0.9.6/openssl/src/compatibility.h | 2 openssl-0.9.6/openssl/src/error.c | 4 openssl-0.9.6/openssl/src/onload.c | 5 openssl-0.9.6/openssl/src/pkcs7.c |only openssl-0.9.6/openssl/tests/certigo/example-elliptic-sha1.p7b |only openssl-0.9.6/openssl/tests/certigo/example-leaf.p7b |only openssl-0.9.6/openssl/tests/certigo/example-root.p7b |only openssl-0.9.6/openssl/tests/testthat/test_pkcs.R |only openssl-0.9.6/openssl/tools/winlibs.R | 4 openssl-0.9.6/openssl/vignettes/bignum.Rmd | 2 32 files changed, 647 insertions(+), 452 deletions(-)
Title: Analysis and Visualization Likert Items
Description: An approach to analyzing Likert response items, with an emphasis on visualizations.
The stacked bar plot is the preferred method for presenting Likert results. Tabular results
are also implemented along with density plots to assist researchers in determining whether
Likert responses can be used quantitatively instead of qualitatively. See the likert(),
summary.likert(), and plot.likert() functions to get started.
Author: Jason Bryer <jason@bryer.org>, Kimberly Speerschneider
<kimkspeer@gmail.com>
Maintainer: Jason Bryer <jason@bryer.org>
Diff between likert versions 1.3.3 dated 2015-12-15 and 1.3.5 dated 2016-12-30
DESCRIPTION | 16 ++++--- MD5 | 26 ++++++----- NAMESPACE | 2 NEWS | 12 +++++ R/likert-package.R | 1 R/likert.R | 4 - R/likert.options.R |only R/plot.histogram.R | 8 +++ R/plot.likert.bar.r | 96 ++++++++++++++++++------------------------- build/vignette.rds |binary demo/likert.R | 1 inst/doc/likert-xtable.pdf |binary man/likert.bar.plot.Rd | 63 +--------------------------- man/likert.histogram.plot.Rd | 13 ++--- man/likert.options.Rd |only 15 files changed, 99 insertions(+), 143 deletions(-)
Title: Stepwise Selection for Large Data Sets
Description: Selecting linear and generalized linear models for large data sets
using modified stepwise procedure and modern selection criteria (like
modifications of Bayesian Information Criterion). Selection can be
performed on data which exceed RAM capacity. Special selection strategy is
available, faster than classical stepwise procedure.
Author: Piotr Szulc
Maintainer: Piotr Szulc <piotr.michal.szulc@gmail.com>
Diff between bigstep versions 0.5.0 dated 2016-10-27 and 0.7.1 dated 2016-12-30
bigstep-0.5.0/bigstep/R/doAllSteps.R |only bigstep-0.5.0/bigstep/R/doSingleTests.R |only bigstep-0.5.0/bigstep/R/fitModel.R |only bigstep-0.5.0/bigstep/man/doSingleTests.Rd |only bigstep-0.5.0/bigstep/tests/testthat/Xshort.txt.txt |only bigstep-0.7.1/bigstep/DESCRIPTION | 22 +- bigstep-0.7.1/bigstep/MD5 | 81 +++++----- bigstep-0.7.1/bigstep/NAMESPACE | 11 + bigstep-0.7.1/bigstep/R/aic.R | 10 - bigstep-0.7.1/bigstep/R/allSteps.R |only bigstep-0.7.1/bigstep/R/backwardStep.R | 29 +-- bigstep-0.7.1/bigstep/R/bic.R | 10 - bigstep-0.7.1/bigstep/R/bigstep.R | 122 +++++++++++++--- bigstep-0.7.1/bigstep/R/calculateLogLik.R |only bigstep-0.7.1/bigstep/R/fitLinear.R |only bigstep-0.7.1/bigstep/R/fitLogistic.R |only bigstep-0.7.1/bigstep/R/fitPoisson.R |only bigstep-0.7.1/bigstep/R/forwardStep.R | 26 ++- bigstep-0.7.1/bigstep/R/maic.R | 8 - bigstep-0.7.1/bigstep/R/maic2.R | 11 - bigstep-0.7.1/bigstep/R/mbic.R | 8 - bigstep-0.7.1/bigstep/R/mbic2.R | 8 - bigstep-0.7.1/bigstep/R/multiBackward.R | 34 +--- bigstep-0.7.1/bigstep/R/multiForward.R | 32 +--- bigstep-0.7.1/bigstep/R/prepareMatrix.R | 17 +- bigstep-0.7.1/bigstep/R/selectModel.R | 134 ++++++++---------- bigstep-0.7.1/bigstep/R/singleTests.R |only bigstep-0.7.1/bigstep/R/stepwise.R | 36 +--- bigstep-0.7.1/bigstep/R/transposeBigMatrix.R | 57 +++---- bigstep-0.7.1/bigstep/man/aic.Rd | 6 bigstep-0.7.1/bigstep/man/bic.Rd | 6 bigstep-0.7.1/bigstep/man/bigstep.Rd | 120 ++++++++++++---- bigstep-0.7.1/bigstep/man/fitLinear.Rd |only bigstep-0.7.1/bigstep/man/fitLogistic.Rd |only bigstep-0.7.1/bigstep/man/fitPoisson.Rd |only bigstep-0.7.1/bigstep/man/maic.Rd | 6 bigstep-0.7.1/bigstep/man/maic2.Rd | 8 - bigstep-0.7.1/bigstep/man/mbic.Rd | 6 bigstep-0.7.1/bigstep/man/mbic2.Rd | 6 bigstep-0.7.1/bigstep/man/selectModel.Rd | 77 +++++----- bigstep-0.7.1/bigstep/man/singleTests.Rd |only bigstep-0.7.1/bigstep/man/transposeBigMatrix.Rd | 7 bigstep-0.7.1/bigstep/tests/testthat/test_backward.R | 55 ++----- bigstep-0.7.1/bigstep/tests/testthat/test_crit.R | 6 bigstep-0.7.1/bigstep/tests/testthat/test_fitmodel.R | 6 bigstep-0.7.1/bigstep/tests/testthat/test_forward.R | 39 ++--- bigstep-0.7.1/bigstep/tests/testthat/test_prepare.R | 15 -- bigstep-0.7.1/bigstep/tests/testthat/test_selection.R | 67 ++++----- bigstep-0.7.1/bigstep/tests/testthat/test_stepwise.R | 28 ++- 49 files changed, 612 insertions(+), 502 deletions(-)
Title: Readable Check Functions to Ensure Code Integrity
Description: Lots of predicates (is_* functions) to check the state of your
variables, and assertions (assert_* functions) to throw errors if they
aren't in the right form.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between assertive versions 0.3-4 dated 2016-05-10 and 0.3-5 dated 2016-12-30
DESCRIPTION | 8 MD5 | 328 +++--- NAMESPACE | 1504 ++++++++++++++-------------- NEWS | 67 - R/assertive-package.R | 118 +- R/exports-base.R | 389 +++---- R/exports-code.R | 166 +-- R/exports-data-uk.R | 88 - R/exports-data-us.R | 64 - R/exports-data.R | 152 +- R/exports-datetimes.R | 60 - R/exports-files.R | 226 ++-- R/exports-numbers.R | 298 ++--- R/exports-properties.R | 392 +++---- R/exports-reflection.R | 518 ++++----- R/exports-sets.R | 8 R/exports-strings.R | 176 +-- R/exports-types.R | 62 + build/vignette.rds |binary inst/doc/checking_function_inputs.R | 86 - inst/doc/checking_function_inputs.Rmd | 2 inst/doc/checking_function_inputs.html | 92 + inst/doc/checklists.Rmd | 130 +- inst/doc/checklists.html | 85 + inst/doc/exercise_answers.R | 10 inst/doc/exercise_answers.Rmd | 86 - inst/doc/exercise_answers.html | 85 + inst/doc/introduction.R | 24 inst/doc/introduction.Rmd | 42 inst/doc/introduction.html | 130 +- man/DIM.Rd | 22 man/Truth.Rd | 66 - man/are_identical.Rd | 26 man/are_same_length.Rd | 34 man/are_set_equal.Rd | 36 man/assert_engine.Rd | 18 man/assert_is_all_of.Rd | 20 man/assertionError.Rd | 22 man/assertive.Rd | 56 - man/bapply.Rd | 18 man/call_and_name.Rd | 18 man/cause.Rd | 20 man/changes.Rd | 90 - man/character_to_list_of_integer_vectors.Rd | 26 man/coerce_to.Rd | 18 man/dont_stop.Rd | 18 man/false.Rd | 18 man/get_name_in_parent.Rd | 18 man/has_any_attributes.Rd | 20 man/has_arg.Rd | 30 man/has_attributes.Rd | 22 man/has_cols.Rd | 24 man/has_dims.Rd | 20 man/has_duplicates.Rd | 24 man/has_names.Rd | 32 man/has_slot.Rd | 20 man/has_terms.Rd | 20 man/is2.Rd | 18 man/is_array.Rd | 24 man/is_atomic.Rd | 36 man/is_batch_mode.Rd | 32 man/is_binding_locked.Rd | 28 man/is_cas_number.Rd | 22 man/is_character.Rd | 24 man/is_class.Rd | 22 man/is_closure_function.Rd |only man/is_complex.Rd | 24 man/is_connection.Rd | 92 - man/is_credit_card_number.Rd | 22 man/is_data.frame.Rd | 20 man/is_data.table.Rd | 20 man/is_date.Rd | 28 man/is_date_string.Rd | 22 man/is_debugged.Rd | 28 man/is_diagonal_matrix.Rd | 20 man/is_dir.Rd | 22 man/is_divisible_by.Rd | 34 man/is_email_address.Rd | 22 man/is_empty.Rd | 44 man/is_empty_character.Rd | 62 - man/is_empty_file.Rd | 34 man/is_empty_model.Rd | 24 man/is_environment.Rd | 20 man/is_equal_to.Rd | 52 man/is_error_free.Rd | 26 man/is_executable_file.Rd | 40 man/is_existing.Rd | 30 man/is_existing_file.Rd | 22 man/is_externalptr.Rd |only man/is_factor.Rd | 24 man/is_finite.Rd | 40 man/is_formula.Rd | 28 man/is_function.Rd | 28 man/is_hex_color.Rd | 28 man/is_honorific.Rd | 22 man/is_identity_matrix.Rd | 20 man/is_if_condition.Rd | 28 man/is_in_past.Rd | 40 man/is_in_range.Rd | 82 - man/is_inherited_from.Rd | 20 man/is_integer.Rd | 24 man/is_internal_function.Rd |only man/is_ip_address.Rd | 22 man/is_isbn_code.Rd | 26 man/is_language.Rd | 36 man/is_leaf.Rd | 20 man/is_library.Rd | 22 man/is_list.Rd | 22 man/is_loaded.Rd | 28 man/is_logical.Rd | 24 man/is_lower_triangular_matrix.Rd | 24 man/is_matching_fixed.Rd | 48 man/is_monotonic_increasing.Rd | 26 man/is_nan.Rd | 28 man/is_null.Rd | 24 man/is_numeric.Rd | 32 man/is_numeric_string.Rd | 36 man/is_on_os_path.Rd | 22 man/is_package_current.Rd | 22 man/is_qr.Rd | 20 man/is_r.Rd | 68 - man/is_r_current.Rd | 22 man/is_raster.Rd | 20 man/is_raw.Rd | 24 man/is_real.Rd | 28 man/is_relistable.Rd | 20 man/is_rstudio_current.Rd | 20 man/is_rstudio_desktop.Rd | 24 man/is_s3_generic.Rd |only man/is_s4.Rd | 28 man/is_single_character.Rd | 30 man/is_square_matrix.Rd | 20 man/is_symmetric_matrix.Rd | 20 man/is_table.Rd | 20 man/is_tbl.Rd | 32 man/is_try_error.Rd | 48 man/is_ts.Rd | 28 man/is_uk_car_licence.Rd | 28 man/is_uk_national_insurance_number.Rd | 22 man/is_uk_postcode.Rd | 22 man/is_uk_telephone_number.Rd | 22 man/is_unsorted.Rd | 20 man/is_us_social_security_number.Rd | 22 man/is_us_telephone_number.Rd | 22 man/is_us_zip_code.Rd | 22 man/is_valid_r_code.Rd | 28 man/is_valid_variable_name.Rd | 30 man/is_whole_number.Rd | 26 man/is_windows.Rd | 146 +- man/is_xxx_for_decimal_point.Rd | 26 man/is_zero_matrix.Rd | 20 man/merge_dots_with_list.Rd | 18 man/n_elements.Rd | 20 man/na.Rd | 18 man/parenthesize.Rd | 20 man/print_and_capture.Rd |only man/r_can_find_tools.Rd | 32 man/r_has_jpeg_capability.Rd | 88 - man/safe_deparse.Rd |only man/set_cause.Rd | 18 man/strip_attributes.Rd | 18 man/sys_get_locale.Rd | 20 man/use_first.Rd | 18 tests/testthat/test-assertive-contents.R | 86 - vignettes/checking_function_inputs.Rmd | 322 ++--- vignettes/checklists.Rmd | 130 +- vignettes/exercise_answers.Rmd | 86 - vignettes/introduction.Rmd | 242 ++-- 168 files changed, 5145 insertions(+), 4831 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-13 1.0.2
2015-04-09 1.0.1
2015-04-08 1.0
Title: A Robust, High Performance JSON Parser and Generator for R
Description: A fast JSON parser and generator optimized for statistical data
and the web. Started out as a fork of 'RJSONIO', but has been completely
rewritten in recent versions. The package offers flexible, robust, high
performance tools for working with JSON in R and is particularly powerful
for building pipelines and interacting with a web API. The implementation is
based on the mapping described in the vignette (Ooms, 2014). In addition to
converting JSON data from/to R objects, 'jsonlite' contains functions to
stream, validate, and prettify JSON data. The unit tests included with the
package verify that all edge cases are encoded and decoded consistently for
use with dynamic data in systems and applications.
Author: Jeroen Ooms, Duncan Temple Lang, Lloyd Hilaiel
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between jsonlite versions 1.1 dated 2016-09-14 and 1.2 dated 2016-12-30
DESCRIPTION | 10 MD5 | 71 ++-- NAMESPACE | 3 NEWS | 7 R/asJSON.POSIXt.R | 4 R/asJSON.raw.R | 3 R/fromJSON.R | 6 R/parseJSON.R | 2 R/push_parser.R | 2 R/rbind.pages.R | 2 R/read_json.R |only R/serializeJSON.R | 1 R/simplify.R | 2 R/simplifyDataFrame.R | 12 R/stream.R | 1 R/transpose_list.R |only build/vignette.rds |binary inst/CITATION | 4 inst/doc/json-aaquickstart.Rmd | 4 inst/doc/json-aaquickstart.html | 19 - inst/doc/json-apis.html | 13 inst/doc/json-mapping.pdf |binary inst/doc/json-opencpu.pdf |binary inst/doc/json-paging.Rmd | 2 inst/doc/json-paging.html | 15 man/fromJSON.Rd | 7 man/prettify.Rd | 5 man/rbind.pages.Rd | 2 man/read_json.Rd |only man/stream_in.Rd | 2 src/modp_numtoa.c | 569 +++++++++++++++++++---------------- src/modp_numtoa.h | 55 +-- src/modp_stdint.h |only src/num_to_char.c | 3 src/transpose_list.c |only tests/testthat/test-toJSON-POSIXt.R | 47 +- tests/testthat/test-toJSON-numeric.R | 2 vignettes/json-aaquickstart.Rmd | 4 vignettes/json-paging.Rmd | 2 39 files changed, 488 insertions(+), 393 deletions(-)
Title: Create Elegant Data Visualisations Using the Grammar of Graphics
Description: A system for 'declaratively' creating graphics,
based on "The Grammar of Graphics". You provide the data, tell 'ggplot2'
how to map variables to aesthetics, what graphical primitives to use,
and it takes care of the details.
Author: Hadley Wickham [aut, cre],
Winston Chang [aut],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between ggplot2 versions 2.2.0 dated 2016-11-11 and 2.2.1 dated 2016-12-30
DESCRIPTION | 8 MD5 | 340 +++++++++++++++++------------------ NEWS.md | 6 R/utilities.r | 2 build/partial.rdb |binary inst/doc/extending-ggplot2.html | 2 man/absoluteGrob.Rd | 1 man/add_theme.Rd | 1 man/aes.Rd | 1 man/aes_.Rd | 3 man/aes_all.Rd | 1 man/aes_auto.Rd | 1 man/aes_colour_fill_alpha.Rd | 3 man/aes_group_order.Rd | 1 man/aes_linetype_size_shape.Rd | 3 man/aes_position.Rd | 11 - man/annotate.Rd | 1 man/annotation_custom.Rd | 1 man/annotation_logticks.Rd | 1 man/annotation_map.Rd | 1 man/annotation_raster.Rd | 1 man/as.list.ggproto.Rd | 1 man/as_labeller.Rd | 1 man/autoplot.Rd | 1 man/benchplot.Rd | 1 man/borders.Rd | 1 man/calc_element.Rd | 1 man/combine_vars.Rd | 1 man/continuous_scale.Rd | 1 man/coord_cartesian.Rd | 1 man/coord_fixed.Rd | 3 man/coord_flip.Rd | 1 man/coord_map.Rd | 1 man/coord_munch.Rd | 1 man/coord_polar.Rd | 1 man/coord_trans.Rd | 1 man/cut_interval.Rd | 7 man/diamonds.Rd | 1 man/discrete_scale.Rd | 1 man/draw_key.Rd | 13 - man/economics.Rd | 1 man/element.Rd | 5 man/element_grob.Rd | 1 man/expand_limits.Rd | 1 man/facet_grid.Rd | 1 man/facet_null.Rd | 1 man/facet_wrap.Rd | 1 man/faithfuld.Rd | 1 man/find_panel.Rd | 1 man/fortify-multcomp.Rd | 5 man/fortify.Rd | 1 man/fortify.lm.Rd | 1 man/fortify.map.Rd | 1 man/fortify.sp.Rd | 13 - man/geom_abline.Rd | 2 man/geom_bar.Rd | 2 man/geom_bin2d.Rd | 4 man/geom_blank.Rd | 1 man/geom_boxplot.Rd | 2 man/geom_contour.Rd | 2 man/geom_count.Rd | 2 man/geom_density.Rd | 2 man/geom_density_2d.Rd | 6 man/geom_dotplot.Rd | 2 man/geom_errorbarh.Rd | 2 man/geom_hex.Rd | 2 man/geom_histogram.Rd | 5 man/geom_jitter.Rd | 2 man/geom_linerange.Rd | 5 man/geom_map.Rd | 2 man/geom_path.Rd | 4 man/geom_point.Rd | 2 man/geom_polygon.Rd | 2 man/geom_qq.Rd | 2 man/geom_quantile.Rd | 2 man/geom_ribbon.Rd | 4 man/geom_rug.Rd | 2 man/geom_segment.Rd | 4 man/geom_smooth.Rd | 2 man/geom_spoke.Rd | 2 man/geom_text.Rd | 2 man/geom_tile.Rd | 2 man/geom_violin.Rd | 2 man/gg-add.Rd | 2 man/gg_dep.Rd | 1 man/ggplot.Rd | 1 man/ggplot2-ggproto.Rd | 76 +++++-- man/ggplot2-package.Rd | 26 ++ man/ggplotGrob.Rd | 1 man/ggplot_build.Rd | 3 man/ggplot_gtable.Rd | 1 man/ggproto.Rd | 2 man/ggsave.Rd | 1 man/ggtheme.Rd | 11 - man/graphical-units.Rd | 1 man/guide_colourbar.Rd | 3 man/guide_legend.Rd | 1 man/guides.Rd | 1 man/hmisc.Rd | 1 man/is.Coord.Rd | 1 man/is.facet.Rd | 1 man/is.ggplot.Rd | 1 man/is.rel.Rd | 1 man/is.theme.Rd | 1 man/label_bquote.Rd | 1 man/labeller.Rd | 1 man/labellers.Rd | 6 man/labs.Rd | 3 man/last_plot.Rd | 1 man/layer.Rd | 1 man/limits.Rd | 1 man/lims.Rd | 1 man/luv_colours.Rd | 1 man/map_data.Rd | 1 man/max_height.Rd | 1 man/mean_se.Rd | 1 man/midwest.Rd | 1 man/mpg.Rd | 1 man/msleep.Rd | 1 man/position_dodge.Rd | 1 man/position_identity.Rd | 1 man/position_jitter.Rd | 1 man/position_jitterdodge.Rd | 1 man/position_nudge.Rd | 1 man/position_stack.Rd | 3 man/presidential.Rd | 1 man/print.ggplot.Rd | 3 man/print.ggproto.Rd | 3 man/qplot.Rd | 1 man/reexports.Rd | 20 +- man/remove_missing.Rd | 1 man/render_axes.Rd | 1 man/render_strips.Rd | 1 man/resolution.Rd | 1 man/scale_alpha.Rd | 1 man/scale_brewer.Rd | 8 man/scale_continuous.Rd | 7 man/scale_date.Rd | 5 man/scale_discrete.Rd | 1 man/scale_gradient.Rd | 23 +- man/scale_grey.Rd | 3 man/scale_hue.Rd | 9 man/scale_identity.Rd | 7 man/scale_linetype.Rd | 1 man/scale_manual.Rd | 9 man/scale_shape.Rd | 3 man/scale_size.Rd | 8 man/seals.Rd | 1 man/sec_axis.Rd | 5 man/should_stop.Rd | 1 man/stat_ecdf.Rd | 2 man/stat_ellipse.Rd | 1 man/stat_function.Rd | 2 man/stat_identity.Rd | 1 man/stat_summary.Rd | 4 man/stat_summary_2d.Rd | 4 man/stat_unique.Rd | 2 man/summary.ggplot.Rd | 1 man/theme.Rd | 2 man/theme_get.Rd | 6 man/transform_position.Rd | 1 man/translate_qplot_ggplot.Rd | 1 man/translate_qplot_lattice.Rd | 1 man/txhousing.Rd | 1 man/update_defaults.Rd | 1 man/update_labels.Rd | 1 man/waiver.Rd | 1 man/wrap_dims.Rd | 1 man/zeroGrob.Rd | 1 vignettes/releases/ggplot2-2.0.0.Rmd | 2 vignettes/releases/ggplot2-2.2.0.Rmd | 11 - 171 files changed, 404 insertions(+), 471 deletions(-)
Title: Statistical Methods for the Item Count Technique and List
Experiment
Description: Allows researchers to conduct multivariate
statistical analyses of survey data with list experiments. This
survey methodology is also known as the item count technique or
the unmatched count technique and is an alternative to the commonly
used randomized response method. The package implements the methods
developed by Imai (2011) <doi:10.1198/jasa.2011.ap10415>,
Blair and Imai (2012) <doi:10.1093/pan/mpr048>,
Blair, Imai, and Lyall (2013) <doi:10.1111/ajps.12086>,
Imai, Park, and Greene (2014) <doi:10.1093/pan/mpu017>,
Aronow, Coppock, Crawford, and Green (2015) <doi:10.1093/jssam/smu023>,
and Chou, Imai, and Rosenfeld (2016)
<http://imai.princeton.edu/research/files/auxiliary.pdf>.
This includes a Bayesian MCMC implementation of regression for the
standard and multiple sensitive item list experiment designs and a
random effects setup, a Bayesian MCMC hierarchical regression model
with up to three hierarchical groups, the combined list experiment
and endorsement experiment regression model, a joint model of the
list experiment that enables the analysis of the list experiment as
a predictor in outcome regression models, and a method for combining
list experiments with direct questions. In addition, the package
implements the statistical test that is designed to detect
certain failures of list experiments, and a placebo test
for the list experiment using data from direct questions.
Author: Graeme Blair [aut, cre], Kosuke Imai [aut, cre], Bethany Park [ctb],
Alexander Coppock [ctb], Winston Chou [ctb]
Maintainer: Graeme Blair <graeme.blair@ucla.edu>
Diff between list versions 8.2 dated 2016-08-16 and 8.3 dated 2016-12-30
list-8.2/list/data/mexico.tab.gz |only list-8.3/list/ChangeLog | 3 list-8.3/list/DESCRIPTION | 37 +-- list-8.3/list/MD5 | 16 - list-8.3/list/NAMESPACE | 1 list-8.3/list/R/ictreg.R | 336 +++++++++++++++++++++++++++++- list-8.3/list/data/mexico.tab |only list-8.3/list/inst/CITATION | 4 list-8.3/list/inst/doc/combined-list.html | 4 list-8.3/list/man/ictreg.Rd | 13 + 10 files changed, 381 insertions(+), 33 deletions(-)
Title: Download Google Sheets Using Just the URL
Description: Simple package to download Google Sheets using just the sharing
link. Spreadsheets can be downloaded as a data frame, or as plain text to parse
manually. Google Sheets is the new name for Google Docs Spreadsheets.
Author: Max Conway [aut, cre]
Maintainer: Max Conway <conway.max1@gmail.com>
Diff between gsheet versions 0.3.0 dated 2016-05-19 and 0.4.2 dated 2016-12-30
DESCRIPTION | 12 ++++----- MD5 | 18 +++++++------- NAMESPACE | 2 - NEWS.md | 11 +++++++- R/construct_download_url.R |only R/gsheet2tbl.R | 50 ++++++++++++++++++++++++++++++++------- R/gsheet2text.R | 13 +--------- README.md | 38 +++++++++++++++++------------ man/construct_download_url.Rd |only man/gsheet2tbl.Rd | 41 +++++++++++++++++++++++++++---- tests/testthat/test-gsheet2tbl.R | 10 +++---- 11 files changed, 133 insertions(+), 62 deletions(-)
Title: Computation of the Probability of Ruin Within a Finite Time
Horizon
Description: In the Cramér–Lundberg risk process perturbed by a Wiener
process, this packages provides approximations to the probability of
ruin within a finite time horizon. Currently, there are three methods
implemented: The first one uses saddlepoint approximation (two
variants are provided), the second one uses importance sampling and
the third one is based on the simulation of a dual process. This last
method is not very accurate and only given here for completeness.
Author: Benjamin Baumgartner [aut, cre],
Riccardo Gatto [ctb, ths]
Maintainer: Benjamin Baumgartner <benjamin@baumgrt.com>
Diff between finiteruinprob versions 0.4 dated 2014-05-11 and 0.6 dated 2016-12-30
finiteruinprob-0.4/finiteruinprob/vignettes/domain.pdf |only finiteruinprob-0.4/finiteruinprob/vignettes/proof.tex |only finiteruinprob-0.6/finiteruinprob/DESCRIPTION | 16 +++---- finiteruinprob-0.6/finiteruinprob/MD5 | 21 +++++----- finiteruinprob-0.6/finiteruinprob/NAMESPACE | 3 + finiteruinprob-0.6/finiteruinprob/build |only finiteruinprob-0.6/finiteruinprob/inst/CITATION | 13 +++--- finiteruinprob-0.6/finiteruinprob/inst/doc |only finiteruinprob-0.6/finiteruinprob/man/finiteruinprob-package.Rd | 6 +- finiteruinprob-0.6/finiteruinprob/man/ruinprob.finite.dsim.Rd | 4 - finiteruinprob-0.6/finiteruinprob/man/ruinprob.finite.imps.Rd | 4 - finiteruinprob-0.6/finiteruinprob/man/ruinprob.finite.sdp.Rd | 4 - finiteruinprob-0.6/finiteruinprob/vignettes/gb2016_complement.Rnw |only finiteruinprob-0.6/finiteruinprob/vignettes/gb2016_complement_domain_fig.pdf |only 14 files changed, 39 insertions(+), 32 deletions(-)
More information about finiteruinprob at CRAN
Permanent link
Title: A Bootstrap Test for the Probability of Ruin in the Classical
Risk Process
Description: We provide a framework for testing the probability of ruin in the classical (compound Poisson) risk process. It also includes some procedures for assessing and comparing the performance between the bootstrap test and the test using asymptotic normality.
Author: Benjamin Baumgartner <benjamin@baumgrt.com>, Riccardo Gatto <gatto@stat.unibe.ch>
Maintainer: Benjamin Baumgartner <benjamin@baumgrt.com>
Diff between bootruin versions 1.2-1 dated 2014-05-29 and 1.2-4 dated 2016-12-30
DESCRIPTION | 15 ++++++++------- MD5 | 6 +++--- NAMESPACE | 1 + R/rpdataconv.R | 12 +++++++----- 4 files changed, 19 insertions(+), 15 deletions(-)
Title: Assertions to Check Types of Variables
Description: A set of predicates and assertions for checking the types of
variables. This is mainly for use by other package developers who want to
include run-time testing features in their own packages. End-users will
usually want to use assertive directly.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between assertive.types versions 0.0-2 dated 2016-03-07 and 0.0-3 dated 2016-12-30
DESCRIPTION | 19 MD5 | 110 +-- NAMESPACE | 309 +++++---- NEWS | 11 R/assert-is-a-type.R | 208 +++--- R/assert-is-condition.R | 208 +++--- R/assert-is-date.R | 76 +- R/assert-is-formula.R | 76 +- R/assert-is-function.R |only R/assert-is-type-base.R | 752 +++++++++++----------- R/assert-is-type-methods.R | 26 R/is-a-type.R | 208 +++--- R/is-condition.R | 184 ++--- R/is-date.R | 78 +- R/is-formula.R | 106 +-- R/is-function.R |only R/is-type-base.R | 1050 ++++++++++++++++---------------- R/is-type-dplyr.R | 126 +-- R/is-type-methods.R | 24 README.md | 122 +-- man/assert_is_all_of.Rd | 74 +- man/is_array.Rd | 86 +- man/is_character.Rd | 86 +- man/is_class.Rd | 74 +- man/is_closure_function.Rd |only man/is_complex.Rd | 98 +- man/is_data.frame.Rd | 72 +- man/is_data.table.Rd | 86 +- man/is_date.Rd | 98 +- man/is_environment.Rd | 72 +- man/is_externalptr.Rd |only man/is_factor.Rd | 80 +- man/is_formula.Rd | 98 +- man/is_function.Rd | 98 +- man/is_inherited_from.Rd | 78 +- man/is_integer.Rd | 94 +- man/is_internal_function.Rd |only man/is_language.Rd | 150 ++-- man/is_leaf.Rd | 60 - man/is_list.Rd | 80 +- man/is_logical.Rd | 96 +- man/is_numeric.Rd | 146 ++-- man/is_qr.Rd | 68 +- man/is_raster.Rd | 82 +- man/is_raw.Rd | 94 +- man/is_relistable.Rd | 74 +- man/is_s3_generic.Rd |only man/is_s4.Rd | 98 +- man/is_table.Rd | 68 +- man/is_tbl.Rd | 122 +-- man/is_try_error.Rd | 198 +++--- man/is_ts.Rd | 92 +- tests/testthat.R | 8 tests/testthat/test-is-a-type.R | 364 +++++------ tests/testthat/test-is-type-grDevices.R | 18 tests/testthat/test-is-type-methods.R | 12 tests/testthat/test-is-type-stats.R | 112 +-- tests/testthat/test-is-type-utils.R | 14 tests/testthat/test-is-type.R | 527 ++++++++-------- 59 files changed, 3780 insertions(+), 3590 deletions(-)
More information about assertive.types at CRAN
Permanent link
Title: Assertions to Check Properties of Sets
Description: A set of predicates and assertions for checking the properties of
sets. This is mainly for use by other package developers who want to
include run-time testing features in their own packages. End-users will
usually want to use assertive directly.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between assertive.sets versions 0.0-2 dated 2016-03-02 and 0.0-3 dated 2016-12-30
DESCRIPTION | 12 - MD5 | 22 +-- NAMESPACE | 32 ++-- NEWS | 10 - R/assert-is-set.R | 140 ++++++++++++-------- R/imports.R | 10 - R/is-set.R | 296 ++++++++++++++++++++++++------------------- README.md | 78 +++++------ man/are_set_equal.Rd | 224 +++++++++++++++++--------------- po/R-assertive.sets.pot | 40 ++--- tests/testthat.R | 12 - tests/testthat/test-is-set.R | 272 ++++++++++++++++++++++----------------- 12 files changed, 647 insertions(+), 501 deletions(-)
More information about assertive.sets at CRAN
Permanent link
Title: Assertions for Checking the State of R
Description: A set of predicates and assertions for checking the state and
capabilities of R, the operating system it is running on, and the IDE
being used. This is mainly for use by other package developers who
want to include run-time testing features in their own packages.
End-users will usually want to use assertive directly.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between assertive.reflection versions 0.0-3 dated 2016-03-29 and 0.0-4 dated 2016-12-30
assertive.reflection-0.0-3/assertive.reflection/man/locale_categories.Rd |only assertive.reflection-0.0-4/assertive.reflection/DESCRIPTION | 10 assertive.reflection-0.0-4/assertive.reflection/MD5 | 85 - assertive.reflection-0.0-4/assertive.reflection/NAMESPACE | 356 ++-- assertive.reflection-0.0-4/assertive.reflection/NEWS | 17 assertive.reflection-0.0-4/assertive.reflection/R/assert-is-32-64-bit.R | 46 assertive.reflection-0.0-4/assertive.reflection/R/assert-is-current.R | 95 - assertive.reflection-0.0-4/assertive.reflection/R/assert-is-decimal-point.R | 26 assertive.reflection-0.0-4/assertive.reflection/R/assert-is-ide.R | 98 - assertive.reflection-0.0-4/assertive.reflection/R/assert-is-on-os-path.R | 60 assertive.reflection-0.0-4/assertive.reflection/R/assert-is-os.R | 391 ++--- assertive.reflection-0.0-4/assertive.reflection/R/assert-is-r-mode.R | 70 assertive.reflection-0.0-4/assertive.reflection/R/assert-is-r-version.R | 114 - assertive.reflection-0.0-4/assertive.reflection/R/imports.R | 12 assertive.reflection-0.0-4/assertive.reflection/R/is-32-64-bit.R | 62 assertive.reflection-0.0-4/assertive.reflection/R/is-current.R | 274 +-- assertive.reflection-0.0-4/assertive.reflection/R/is-decimal-point.R | 218 +- assertive.reflection-0.0-4/assertive.reflection/R/is-ide.R | 26 assertive.reflection-0.0-4/assertive.reflection/R/is-on-os-path.R | 86 - assertive.reflection-0.0-4/assertive.reflection/R/is-os.R | 745 +++++----- assertive.reflection-0.0-4/assertive.reflection/R/is-r-mode.R | 224 +-- assertive.reflection-0.0-4/assertive.reflection/R/is-r-version.R | 246 +-- assertive.reflection-0.0-4/assertive.reflection/R/locale.R | 181 +- assertive.reflection-0.0-4/assertive.reflection/R/r-has-capability.R | 12 assertive.reflection-0.0-4/assertive.reflection/README.md | 132 - assertive.reflection-0.0-4/assertive.reflection/man/is_batch_mode.Rd | 100 - assertive.reflection-0.0-4/assertive.reflection/man/is_on_os_path.Rd | 82 - assertive.reflection-0.0-4/assertive.reflection/man/is_package_current.Rd | 110 - assertive.reflection-0.0-4/assertive.reflection/man/is_r.Rd | 290 ++- assertive.reflection-0.0-4/assertive.reflection/man/is_r_current.Rd | 80 - assertive.reflection-0.0-4/assertive.reflection/man/is_rstudio_current.Rd | 68 assertive.reflection-0.0-4/assertive.reflection/man/is_rstudio_desktop.Rd | 56 assertive.reflection-0.0-4/assertive.reflection/man/is_windows.Rd | 547 +++---- assertive.reflection-0.0-4/assertive.reflection/man/is_xxx_for_decimal_point.Rd | 186 +- assertive.reflection-0.0-4/assertive.reflection/man/r_has_jpeg_capability.Rd | 330 ++-- assertive.reflection-0.0-4/assertive.reflection/man/rstudio_version_info.Rd | 24 assertive.reflection-0.0-4/assertive.reflection/man/sys_get_locale.Rd | 94 - assertive.reflection-0.0-4/assertive.reflection/po/R-assertive.reflection.pot | 130 - assertive.reflection-0.0-4/assertive.reflection/tests/testthat/test-is-32-64-bit.R | 10 assertive.reflection-0.0-4/assertive.reflection/tests/testthat/test-is-ide.R | 23 assertive.reflection-0.0-4/assertive.reflection/tests/testthat/test-is-on-os-path.R | 22 assertive.reflection-0.0-4/assertive.reflection/tests/testthat/test-is-os.R | 152 +- assertive.reflection-0.0-4/assertive.reflection/tests/testthat/test-is-r-version.R | 210 +- assertive.reflection-0.0-4/assertive.reflection/tests/testthat/test-r-has-capabilities.R | 68 44 files changed, 3181 insertions(+), 2987 deletions(-)
More information about assertive.reflection at CRAN
Permanent link
Title: Various Plotting Functions
Description: Lots of plots, various labeling, axis and color scaling functions.
Author: Jim Lemon, Ben Bolker, Sander Oom,
Eduardo Klein, Barry Rowlingson,
Hadley Wickham, Anupam Tyagi,
Olivier Eterradossi, Gabor Grothendieck,
Michael Toews, John Kane, Rolf Turner,
Carl Witthoft, Julian Stander, Thomas Petzoldt,
Remko Duursma, Elisa Biancotto, Ofir Levy,
Christophe Dutang, Peter Solymos, Robby Engelmann,
Michael Hecker, Felix Steinbeck, Hans Borchers,
Henrik Singmann, Ted Toal, Derek Ogle
Maintainer: Jim Lemon <drjimlemon@gmail.com>
Diff between plotrix versions 3.6-3 dated 2016-07-21 and 3.6-4 dated 2016-12-30
DESCRIPTION | 8 +- MD5 | 52 +++++++------ NAMESPACE | 9 +- NEWS | 12 +++ R/barNest.R | 12 ++- R/brkdnNest.R | 34 +++++--- R/drawNestedBars.R | 2 R/floatpie.R | 2 R/gantt.R | 174 +++++++++++++++++++++------------------------- R/gap.barplot.R | 10 +- R/intersectDiagram.R | 17 ++-- R/placeLabels.R |only R/raw.means.plot.R | 24 +++++- R/taylor.diagram.R | 3 R/textbox.R | 22 ++--- R/twoord.plot.R | 2 data/soils.rda |binary demo/plotrix.R | 2 man/barNest.Rd | 2 man/binciW.Rd |only man/binciWl.Rd | 9 -- man/binciWu.Rd | 9 -- man/brkdnNest.Rd | 11 +- man/color.id.Rd | 2 man/intersectDiagram.Rd | 8 +- man/jiggle.Rd |only man/placeLabels.Rd |only man/raw.means.plot.Rd | 16 ++-- man/thigmophobe.labels.Rd | 2 29 files changed, 246 insertions(+), 198 deletions(-)
Title: Joint Modelling of Multivariate Longitudinal Data and
Time-to-Event Outcomes
Description: Fits the joint model proposed by Henderson and colleagues (2000)
<doi:10.1093/biostatistics/1.4.465>, but extended to the case of multiple
continuous longitudinal measures. The time-to-event data is modelled using a
Cox proportional hazards regression model with time-varying covariates. The
multiple longitudinal outcomes are modelled using a multivariate version of the
Laird and Ware linear mixed model. The association is captured by a multivariate
latent Gaussian process. The model is estimated using a Monte Carlo Expectation
Maximization algorithm. This project is funded by the Medical Research Council
(Grant number MR/M013227/1).
Author: Graeme L. Hickey [cre, aut],
Pete Philipson [aut],
Andrea Jorgensen [aut],
Ruwanthi Kolamunnage-Dona [aut],
Paula Williamson [ctb]
Maintainer: Graeme L. Hickey <graeme.hickey@liverpool.ac.uk>
Diff between joineRML versions 0.1.0 dated 2016-12-27 and 0.1.1 dated 2016-12-30
DESCRIPTION | 14 +++++++------- MD5 | 14 +++++++------- NAMESPACE | 2 ++ NEWS.md | 4 ++++ R/sigma.mjoint.R | 20 ++++++++++++++++++-- inst/doc/joineRML.html | 4 ++-- inst/doc/technical.pdf |binary man/sigma.mjoint.Rd | 26 +++++++++++++++++++++++--- 8 files changed, 63 insertions(+), 21 deletions(-)
Title: Computing Word Alignment Using IBM Model 1 (and Symmetrization)
for a Given Parallel Corpus and Its Evaluation
Description: For a given Sentence-Aligned Parallel Corpus, it aligns words for each sentence pair. It considers one-to-many and symmetrization alignments. Moreover, it evaluates the quality of word alignment based on this package and some other software. It also builds an automatic dictionary of two languages based on given parallel corpus.
Author: Neda Daneshagr and Majid Sarmad.
Maintainer: Neda Daneshgar<ne_da978@stu-mail.um.ac.ir>
Diff between word.alignment versions 1.0.3 dated 2016-12-21 and 1.0.4 dated 2016-12-30
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/Evaluation1.R | 7 +++---- R/Symmetrization.R | 17 ++++++++++------- R/mydictionary.R | 6 +++--- R/word_alignIBM1.R | 13 +++++++++---- man/Evaluation1.Rd | 34 ++-------------------------------- man/word.alignment-package.Rd | 4 ++-- man/word_alignIBM1.Rd | 15 +++++++++++---- 9 files changed, 52 insertions(+), 68 deletions(-)
More information about word.alignment at CRAN
Permanent link
Title: Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and
Destruction Rate Modelling
Description: Distributions that are typically used for exposure rating in
general insurance, in particular to price reinsurance contracts.
The vignettes show code snippets to fit the distribution to
empirical data.
Author: Giorgio Spedicato [aut, cre],
Christophe Dutang [aut],
Markus Gesmann [ctb]
Maintainer: Giorgio Spedicato <spedicato_giorgio@yahoo.it>
Diff between mbbefd versions 0.8-5 dated 2016-07-07 and 0.8.7 dated 2016-12-30
ChangeLog | 7 ++++- DESCRIPTION | 6 ++-- MD5 | 46 +++++++++++++++++++---------------- NAMESPACE | 1 NEWS | 4 +-- R/RcppExports.R | 2 - R/distr-1infl-distrib.R | 3 +- R/distr-mbbefdR-1stparam.R | 16 ++++++++---- R/distr-mbbefdR-2ndparam.R | 35 ++++++++++++++------------ R/fitDR-output.R | 6 +++- README.md | 2 - build/vignette.rds |binary data/itagradescore.rda |only inst/doc/Introduction_to_mbbefd.R | 2 - inst/doc/Introduction_to_mbbefd.Rmd | 2 - inst/doc/Introduction_to_mbbefd.pdf |binary man/asiacomrisk.Rd | 2 - man/itagradscore.Rd |only man/mbbefd-package.Rd | 13 ++++++--- src/RcppExports.cpp | 26 +++++++++---------- tests/check-formula-integral.R |only tests/test-lossalae.R | 18 ++++++++++++- tests/test-mbbefd-1stparam.R | 26 ++++++++++++++++++- tests/test-mbbefd-2ndparam.R | 24 +++++++++++++----- tests/test-smokedfish.R |only vignettes/Introduction_to_mbbefd.Rmd | 2 - 26 files changed, 159 insertions(+), 84 deletions(-)
Title: Plotting Methods for 'simmer'
Description: A set of plotting methods for 'simmer' trajectories and simulations.
Author: Iñaki Ucar [aut, cph, cre],
Bart Smeets [aut, cph]
Maintainer: Iñaki Ucar <i.ucar86@gmail.com>
Diff between simmer.plot versions 0.1.3 dated 2016-12-29 and 0.1.4 dated 2016-12-30
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/plot.trajectory.R | 10 +++++++--- inst/doc/plot.simmer.html | 12 ++++++------ inst/doc/plot.trajectory.html | 16 ++++++++-------- 6 files changed, 35 insertions(+), 25 deletions(-)
Title: 'SCS' Plugin for the 'R' Optimization Infrastructure
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the 'SCS' solver for solving convex cone problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.scs versions 0.2-2 dated 2016-06-19 and 0.2-3 dated 2016-12-30
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- R/plugin.R | 16 +++++++--------- tests/test_scs.R | 33 ++++++++++++++++++++++----------- 4 files changed, 38 insertions(+), 29 deletions(-)
More information about ROI.plugin.scs at CRAN
Permanent link
Title: 'ECOS' Plugin for the 'R' Optimization Infrastructure
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the Embedded Conic Solver ('ECOS') for solving conic optimization problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.ecos versions 0.2-2 dated 2016-06-19 and 0.2-4 dated 2016-12-30
DESCRIPTION | 12 ++--- MD5 | 6 +- R/plugin.R | 2 tests/test_ecos.R | 124 +++++++++++++++++++++++++++--------------------------- 4 files changed, 72 insertions(+), 72 deletions(-)
More information about ROI.plugin.ecos at CRAN
Permanent link
Title: Robust Estimation in the Presence of Cellwise and Casewise
Contamination and Missing Data
Description: Robust Estimation of Multivariate Location and Scatter in the
Presence of Cellwise and Casewise Contamination and Missing Data.
Author: Andy Leung, Mike Danilov, Victor Yohai, Ruben Zamar
Maintainer: Andy Leung <andy.leung@stat.ubc.ca>
Diff between GSE versions 4.0 dated 2016-09-05 and 4.1 dated 2016-12-30
ChangeLog | 233 +++++++++++++++-------------- DESCRIPTION | 10 - MD5 | 90 +++++------ NAMESPACE | 105 ++++++------- R/CovEM.R | 210 +++++++++++++------------- R/GSE-utils.R | 352 ++++++++++++++++++++++----------------------- R/GSE.R | 304 +++++++++++++++++++------------------- R/LRT.R | 66 ++++---- R/TSGS.R | 147 ++++++++++-------- R/emve-utils.R | 180 +++++++++++------------ R/emve.R | 280 +++++++++++++++++------------------ R/filter.R | 138 ++++++++--------- R/generic.R | 314 ++++++++++++++++++++-------------------- R/huberPairwise.R | 202 ++++++++++++------------- R/impute.R | 84 +++++----- R/misc.R | 198 ++++++++++++------------- R/plots-utils.R | 176 +++++++++++----------- R/simulation-utils.R | 116 +++++++------- R/zzz.R | 6 man/CovEM.Rd | 60 +++---- man/CovRobMiss-class.Rd | 114 +++++++------- man/CovRobMissSc-class.Rd | 76 ++++----- man/GSE-class.Rd | 120 +++++++-------- man/GSE.Rd | 196 ++++++++++++------------- man/HuberPairwise-class.Rd | 66 ++++---- man/HuberPairwise.Rd | 98 ++++++------ man/ImpS.Rd | 88 +++++------ man/SummaryCov-class.Rd | 48 +++--- man/TSGS-class.Rd | 62 +++---- man/TSGS.Rd | 214 +++++++++++++-------------- man/auto.Rd | 116 +++++++------- man/boston.Rd | 126 ++++++++-------- man/calcium.Rd | 114 +++++++------- man/emve-class.Rd | 104 ++++++------- man/emve.Rd | 118 +++++++-------- man/geochem.Rd | 214 +++++++++++++-------------- man/get-methods.Rd | 154 +++++++++---------- man/gyfilt.Rd | 124 +++++++-------- man/horse.Rd | 92 +++++------ man/partial.mahalanobis.Rd | 106 ++++++------- man/plot-methods.Rd | 112 +++++++------- man/simulation-tools.Rd | 102 ++++++------- man/slrt.Rd | 60 +++---- man/wages.Rd | 74 ++++----- src/Makevars.win | 1 src/emve.cpp | 128 ++++++++-------- 46 files changed, 3061 insertions(+), 3037 deletions(-)
Title: Unimodal Additive Hazards Model
Description: Nonparametric estimation of a unimodal or U-shape covariate effect under additive hazards model.
Author: Yunro Chung [cre], Anastasia Ivanova, Michael G. Hudgens and Jason P. Fine
Maintainer: Yunro Chung <ychung@fredhutch.org>
Diff between uniah versions 0.4 dated 2016-01-05 and 1.0 dated 2016-12-30
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- man/uniah-package.Rd | 6 +++--- man/uniah.Rd | 4 ++-- 4 files changed, 13 insertions(+), 13 deletions(-)
Title: Tropical Fisheries Analysis with R
Description: Fish stock assessment methods and fisheries models based on the FAO
Manual "Introduction to tropical fish stock assessment" by P. Sparre and
S.C. Venema <http://www.fao.org/docrep/W5449E/W5449E00.htm>. Focus is the
analysis of length-frequency data and data poor fisheries.
Author: Tobias K. Mildenberger, Marc H. Taylor, Matthias Wolff
Maintainer: Tobias K. Mildenberger <t.k.mildenberger@gmail.com>
Diff between TropFishR versions 1.0.0 dated 2016-09-09 and 1.0.2 dated 2016-12-30
DESCRIPTION | 10 - MD5 | 100 ++++++----- NAMESPACE | 3 R/Bhattacharya.R | 6 R/ELEFAN.R | 43 +++-- R/ELEFAN_GA.R | 43 +++-- R/ELEFAN_SA.R | 70 ++++---- R/M_empirical.R | 47 ++++- R/VBGF.R | 18 +- R/VPA.R | 8 R/alba.R |only R/catchCurve.R | 23 ++ R/gillnetfit.R | 68 +++++-- R/lfqCreate.R |only R/lfqFitCurves.R | 18 +- R/lfqModify.R |only R/lfqRestructure.R | 96 +++++------ R/plot.catchCurve.R | 49 +++-- R/plot.lfq.R | 20 +- R/plot.predict_mod.R | 290 +++++++++++++++++++++++++-------- R/plot.prod_mod_ts.R | 76 ++++---- R/powell_wetherall.R | 11 - R/predict_mod.R | 369 +++++++++++++++++++++++++++++++++---------- R/select_Millar.R | 10 - R/startingPoint2tanchor.R |only R/synLFQ4.R | 6 R/synLFQ5.R | 6 R/synLFQ6.R |only R/ypr_sel.R | 2 README.md | 3 data/alba.rda |only data/synLFQ4.rda |binary data/synLFQ5.rda |binary data/synLFQ6.rda |only man/Bhattacharya.Rd | 1 man/ELEFAN.Rd | 21 +- man/ELEFAN_GA.Rd | 18 +- man/ELEFAN_SA.Rd | 18 +- man/M_empirical.Rd | 14 + man/VBGF.Rd | 12 - man/VPA.Rd | 7 man/alba.Rd |only man/catchCurve.Rd | 4 man/gillnetfit.Rd | 43 +++-- man/lfqCreate.Rd |only man/lfqModify.Rd |only man/lfqRestructure.Rd | 29 ++- man/plot.catchCurve.Rd | 6 man/plot.lfq.Rd | 9 - man/plot.predict_mod.Rd | 35 +++- man/powell_wetherall.Rd | 7 man/predict_mod.Rd | 59 +++--- man/select_Millar.Rd | 4 man/startingPoint2tanchor.Rd |only man/synLFQ4.Rd | 6 man/synLFQ5.Rd | 6 man/synLFQ6.Rd |only 57 files changed, 1161 insertions(+), 533 deletions(-)
Title: 'Rcpp' Integration for the 'MLPACK' Library
Description: 'MLPACK' is an intuitive, fast, scalable C++ machine learning
library, meant to be a machine learning analog to 'LAPACK'. It
aims to implement a wide array of machine learning methods
and function as a Swiss army knife for machine learning
researchers: 'MLPACK' is available from <http://www.mlpack.org/>;
sources are included in the package.
Author: Qiang Kou, Ryan Curtin
Maintainer: Qiang Kou <qkou@umail.iu.edu>
Diff between RcppMLPACK versions 1.0.10-4 dated 2016-05-08 and 1.0.10-6 dated 2016-12-30
DESCRIPTION | 31 +++++++++++++++---------------- MD5 | 26 ++++++++++++++------------ R/flags.R | 2 +- README.md | 6 ++---- build/vignette.rds |binary configure |only configure.ac |only inst/doc/RcppMLPACK-intro.pdf |binary inst/include/RcppMLPACK.h | 9 +-------- man/mlKmeans.Rd | 2 -- src/Makevars | 2 +- src/Makevars.win | 2 +- src/RcppExports.cpp | 18 +++++++----------- src/RcppMLPACK.h | 10 ---------- src/kmeans.cpp | 18 ++++++++++-------- 15 files changed, 52 insertions(+), 74 deletions(-)
Title: Generating Various Numerical Representation Schemes for Protein
Sequences
Description: Comprehensive toolkit for generating various numerical
features of protein sequences described in Xiao et al. (2015)
<DOI:10.1093/bioinformatics/btv042>. For full functionality,
the software 'ncbi-blast+' is needed, see
<https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs&DOC_TYPE=Download>
for more information.
Author: Nan Xiao [aut, cre],
Qingsong Xu [aut],
Dongsheng Cao [aut]
Maintainer: Nan Xiao <me@nanx.me>
Diff between protr versions 1.2-0 dated 2016-11-12 and 1.2-1 dated 2016-12-30
protr-1.2-0/protr/R/desc01AAC.R |only protr-1.2-0/protr/R/desc02DC.R |only protr-1.2-0/protr/R/desc03TC.R |only protr-1.2-0/protr/R/desc04MoreauBroto.R |only protr-1.2-0/protr/R/desc05Moran.R |only protr-1.2-0/protr/R/desc06Geary.R |only protr-1.2-0/protr/R/desc07CTDC.R |only protr-1.2-0/protr/R/desc07CTDCClass.R |only protr-1.2-0/protr/R/desc08CTDT.R |only protr-1.2-0/protr/R/desc08CTDTClass.R |only protr-1.2-0/protr/R/desc09CTDD.R |only protr-1.2-0/protr/R/desc09CTDDClass.R |only protr-1.2-0/protr/R/desc10CTriad.R |only protr-1.2-0/protr/R/desc10CTriadClass.R |only protr-1.2-0/protr/R/desc11SOCN.R |only protr-1.2-0/protr/R/desc12QSO.R |only protr-1.2-0/protr/R/desc13PAAC.R |only protr-1.2-0/protr/R/desc14APAAC.R |only protr-1.2-0/protr/R/desc15PSSM.R |only protr-1.2-0/protr/R/desc15PSSMAcc.R |only protr-1.2-0/protr/R/desc15PSSMFeature.R |only protr-1.2-0/protr/R/misc01readFASTA.R |only protr-1.2-0/protr/R/misc02readPDB.R |only protr-1.2-0/protr/R/misc03protcheck.R |only protr-1.2-0/protr/R/misc04protseg.R |only protr-1.2-0/protr/R/misc05getUniProt.R |only protr-1.2-0/protr/R/misc06acc.R |only protr-1.2-0/protr/R/par01parSeqSim.R |only protr-1.2-0/protr/R/par02parGOSim.R |only protr-1.2-0/protr/R/pcm01extractScales.R |only protr-1.2-0/protr/R/pcm01extractScalesGap.R |only protr-1.2-0/protr/R/pcm02extractDescScales.R |only protr-1.2-0/protr/R/pcm03extractProtFP.R |only protr-1.2-0/protr/R/pcm03extractProtFPGap.R |only protr-1.2-0/protr/R/pcm04extractFAScales.R |only protr-1.2-0/protr/R/pcm05extractMDSScales.R |only protr-1.2-0/protr/R/pcm06extractBLOSUM.R |only protr-1.2-1/protr/DESCRIPTION | 35 +++-- protr-1.2-1/protr/MD5 | 174 ++++++++++++------------- protr-1.2-1/protr/NEWS.md | 40 +++-- protr-1.2-1/protr/R/desc-01-AAC.R |only protr-1.2-1/protr/R/desc-02-DC.R |only protr-1.2-1/protr/R/desc-03-TC.R |only protr-1.2-1/protr/R/desc-04-MoreauBroto.R |only protr-1.2-1/protr/R/desc-05-Moran.R |only protr-1.2-1/protr/R/desc-06-Geary.R |only protr-1.2-1/protr/R/desc-07-CTDC.R |only protr-1.2-1/protr/R/desc-07-CTDCClass.R |only protr-1.2-1/protr/R/desc-08-CTDT.R |only protr-1.2-1/protr/R/desc-08-CTDTClass.R |only protr-1.2-1/protr/R/desc-09-CTDD.R |only protr-1.2-1/protr/R/desc-09-CTDDClass.R |only protr-1.2-1/protr/R/desc-10-CTriad.R |only protr-1.2-1/protr/R/desc-10-CTriadClass.R |only protr-1.2-1/protr/R/desc-11-SOCN.R |only protr-1.2-1/protr/R/desc-12-QSO.R |only protr-1.2-1/protr/R/desc-13-PAAC.R |only protr-1.2-1/protr/R/desc-14-APAAC.R |only protr-1.2-1/protr/R/desc-15-PSSM.R |only protr-1.2-1/protr/R/desc-15-PSSMAcc.R |only protr-1.2-1/protr/R/desc-15-PSSMFeature.R |only protr-1.2-1/protr/R/misc-01-readFASTA.R |only protr-1.2-1/protr/R/misc-02-readPDB.R |only protr-1.2-1/protr/R/misc-03-protcheck.R |only protr-1.2-1/protr/R/misc-04-protseg.R |only protr-1.2-1/protr/R/misc-05-getUniProt.R |only protr-1.2-1/protr/R/misc-06-acc.R |only protr-1.2-1/protr/R/par-01-parSeqSim.R |only protr-1.2-1/protr/R/par-02-parGOSim.R |only protr-1.2-1/protr/R/pcm-01-extractScales.R |only protr-1.2-1/protr/R/pcm-01-extractScalesGap.R |only protr-1.2-1/protr/R/pcm-02-extractDescScales.R |only protr-1.2-1/protr/R/pcm-03-extractProtFP.R |only protr-1.2-1/protr/R/pcm-03-extractProtFPGap.R |only protr-1.2-1/protr/R/pcm-04-extractFAScales.R |only protr-1.2-1/protr/R/pcm-05-extractMDSScales.R |only protr-1.2-1/protr/R/pcm-06-extractBLOSUM.R |only protr-1.2-1/protr/R/protr-package.R | 7 - protr-1.2-1/protr/README.md | 59 ++++---- protr-1.2-1/protr/build/vignette.rds |binary protr-1.2-1/protr/inst/doc/protr.Rnw | 16 -- protr-1.2-1/protr/inst/doc/protr.pdf |binary protr-1.2-1/protr/man/acc.Rd | 2 protr-1.2-1/protr/man/extractAAC.Rd | 2 protr-1.2-1/protr/man/extractAPAAC.Rd | 2 protr-1.2-1/protr/man/extractBLOSUM.Rd | 2 protr-1.2-1/protr/man/extractCTDC.Rd | 2 protr-1.2-1/protr/man/extractCTDCClass.Rd | 2 protr-1.2-1/protr/man/extractCTDD.Rd | 2 protr-1.2-1/protr/man/extractCTDDClass.Rd | 2 protr-1.2-1/protr/man/extractCTDT.Rd | 2 protr-1.2-1/protr/man/extractCTDTClass.Rd | 2 protr-1.2-1/protr/man/extractCTriad.Rd | 2 protr-1.2-1/protr/man/extractCTriadClass.Rd | 2 protr-1.2-1/protr/man/extractDC.Rd | 2 protr-1.2-1/protr/man/extractDescScales.Rd | 2 protr-1.2-1/protr/man/extractFAScales.Rd | 2 protr-1.2-1/protr/man/extractGeary.Rd | 2 protr-1.2-1/protr/man/extractMDSScales.Rd | 2 protr-1.2-1/protr/man/extractMoran.Rd | 2 protr-1.2-1/protr/man/extractMoreauBroto.Rd | 2 protr-1.2-1/protr/man/extractPAAC.Rd | 2 protr-1.2-1/protr/man/extractPSSM.Rd | 2 protr-1.2-1/protr/man/extractPSSMAcc.Rd | 2 protr-1.2-1/protr/man/extractPSSMFeature.Rd | 2 protr-1.2-1/protr/man/extractProtFP.Rd | 2 protr-1.2-1/protr/man/extractProtFPGap.Rd | 2 protr-1.2-1/protr/man/extractQSO.Rd | 2 protr-1.2-1/protr/man/extractSOCN.Rd | 2 protr-1.2-1/protr/man/extractScales.Rd | 2 protr-1.2-1/protr/man/extractScalesGap.Rd | 2 protr-1.2-1/protr/man/extractTC.Rd | 2 protr-1.2-1/protr/man/getUniProt.Rd | 2 protr-1.2-1/protr/man/parGOSim.Rd | 2 protr-1.2-1/protr/man/parSeqSim.Rd | 2 protr-1.2-1/protr/man/protcheck.Rd | 2 protr-1.2-1/protr/man/protr-package.Rd | 7 - protr-1.2-1/protr/man/protseg.Rd | 2 protr-1.2-1/protr/man/readFASTA.Rd | 2 protr-1.2-1/protr/man/readPDB.Rd | 2 protr-1.2-1/protr/man/twoGOSim.Rd | 2 protr-1.2-1/protr/man/twoSeqSim.Rd | 2 protr-1.2-1/protr/vignettes/fig/protrweb.png |binary protr-1.2-1/protr/vignettes/protr.Rnw | 16 -- protr-1.2-1/protr/vignettes/protr.bib | 2 125 files changed, 221 insertions(+), 213 deletions(-)
Title: Assertions to Check Properties of Variables
Description: A set of predicates and assertions for checking the properties of
variables, such as length, names and attributes. This is mainly for use by
other package developers who want to include run-time testing features in
their own packages. End-users will usually want to use assertive directly.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between assertive.properties versions 0.0-3 dated 2016-05-09 and 0.0-4 dated 2016-12-30
assertive.properties-0.0-3/assertive.properties/inst |only assertive.properties-0.0-4/assertive.properties/DESCRIPTION | 10 assertive.properties-0.0-4/assertive.properties/MD5 | 90 +-- assertive.properties-0.0-4/assertive.properties/NAMESPACE | 168 +++--- assertive.properties-0.0-4/assertive.properties/NEWS | 12 assertive.properties-0.0-4/assertive.properties/R/assert-has-attributes.R | 80 +- assertive.properties-0.0-4/assertive.properties/R/assert-has-dims.R | 78 +- assertive.properties-0.0-4/assertive.properties/R/assert-has-dupes.R | 50 - assertive.properties-0.0-4/assertive.properties/R/assert-has-names.R | 102 +-- assertive.properties-0.0-4/assertive.properties/R/assert-is-atomic-recursive-vector.R | 128 ++-- assertive.properties-0.0-4/assertive.properties/R/assert-is-empty-scalar.R | 202 +++---- assertive.properties-0.0-4/assertive.properties/R/assert-is-monotonic.R | 54 - assertive.properties-0.0-4/assertive.properties/R/assert-is-null.R | 40 - assertive.properties-0.0-4/assertive.properties/R/assert-is-unsorted.R | 28 - assertive.properties-0.0-4/assertive.properties/R/has-attributes.R | 161 +++-- assertive.properties-0.0-4/assertive.properties/R/has-dims.R | 140 ++--- assertive.properties-0.0-4/assertive.properties/R/has-dupes.R | 98 +-- assertive.properties-0.0-4/assertive.properties/R/has-names.R | 174 +++--- assertive.properties-0.0-4/assertive.properties/R/is-atomic-recursive-vector.R | 240 ++++---- assertive.properties-0.0-4/assertive.properties/R/is-monotonic.R | 192 +++---- assertive.properties-0.0-4/assertive.properties/R/is-null.R | 106 ++- assertive.properties-0.0-4/assertive.properties/R/utils.R | 96 +-- assertive.properties-0.0-4/assertive.properties/README.md | 130 ++-- assertive.properties-0.0-4/assertive.properties/man/DIM.Rd | 60 +- assertive.properties-0.0-4/assertive.properties/man/are_same_length.Rd | 162 ++--- assertive.properties-0.0-4/assertive.properties/man/has_any_attributes.Rd | 68 +- assertive.properties-0.0-4/assertive.properties/man/has_attributes.Rd | 95 +-- assertive.properties-0.0-4/assertive.properties/man/has_cols.Rd | 86 +-- assertive.properties-0.0-4/assertive.properties/man/has_dims.Rd | 62 +- assertive.properties-0.0-4/assertive.properties/man/has_duplicates.Rd | 88 +-- assertive.properties-0.0-4/assertive.properties/man/has_names.Rd | 128 ++-- assertive.properties-0.0-4/assertive.properties/man/has_slot.Rd | 78 +- assertive.properties-0.0-4/assertive.properties/man/is_atomic.Rd | 202 +++---- assertive.properties-0.0-4/assertive.properties/man/is_empty.Rd | 274 +++++----- assertive.properties-0.0-4/assertive.properties/man/is_monotonic_increasing.Rd | 102 +-- assertive.properties-0.0-4/assertive.properties/man/is_null.Rd | 117 ++-- assertive.properties-0.0-4/assertive.properties/man/is_unsorted.Rd | 108 +-- assertive.properties-0.0-4/assertive.properties/man/n_elements.Rd | 68 +- assertive.properties-0.0-4/assertive.properties/tests/testthat/test-has-attributes.R | 36 - assertive.properties-0.0-4/assertive.properties/tests/testthat/test-has-dims.R | 190 +++--- assertive.properties-0.0-4/assertive.properties/tests/testthat/test-has-dupes.R | 94 +-- assertive.properties-0.0-4/assertive.properties/tests/testthat/test-has-names.R | 256 ++++----- assertive.properties-0.0-4/assertive.properties/tests/testthat/test-is-empty-scalar.R | 154 ++--- assertive.properties-0.0-4/assertive.properties/tests/testthat/test-is-monotonic.R |only assertive.properties-0.0-4/assertive.properties/tests/testthat/test-is-null.R | 58 +- assertive.properties-0.0-4/assertive.properties/tests/testthat/test-is-unsorted.R | 24 46 files changed, 2476 insertions(+), 2413 deletions(-)
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