Title: Tools for Post-Selection Inference
Description: New tools for post-selection inference, for use
with forward stepwise regression, least angle regression, the
lasso, and the many means problem. The lasso function implements Gaussian, logistic and Cox survival models.
Author: Ryan Tibshirani, Rob Tibshirani, Jonathan Taylor,
Joshua Loftus, Stephen Reid
Maintainer: Rob Tibshirani <tibs@stanford.edu>
Diff between selectiveInference versions 1.2.0 dated 2016-06-13 and 1.2.2 dated 2017-01-16
DESCRIPTION | 8 +-- MD5 | 10 ++-- R/funs.common.R | 50 +++++++++++++++++++-- R/funs.fixed.R | 61 ++++++++++--------------- R/funs.fixedLogit.R | 10 ++-- R/funs.lar.R | 123 +++++++++++++++++++--------------------------------- 6 files changed, 132 insertions(+), 130 deletions(-)
More information about selectiveInference at CRAN
Permanent link
Title: Calculate Indices and Theoretical Properties of Protein
Sequences
Description: Calculate physicochemical properties and indices from amino-acid sequences of peptides and proteins. Include also the option to read and plot output files from the 'GROMACS' molecular dynamics package.
Author: Daniel Osorio, Paola Rondon-Villarreal and Rodrigo Torres.
Maintainer: Daniel Osorio <daniel.osorio@correo.uis.edu.co>
Diff between Peptides versions 1.1.1 dated 2015-11-27 and 1.1.2 dated 2017-01-16
DESCRIPTION | 8 MD5 | 41 +-- NEWS | 5 R/aacomp.R | 43 ++- R/aindex.R | 19 + R/boman.R | 36 ++- R/charge.R | 45 ++- R/hmoment.R | 39 +-- R/hydrophobicity.R | 15 - R/instaindex.R | 448 +++++++++++++++++++++++++++++++++++--- R/kidera.R | 16 - R/lengthpep.R | 4 R/membpos.R | 34 +- R/mw.R | 76 +++++- R/pI.R | 15 - README.md |only inst/tests/runit.aacomp.R | 6 inst/tests/runit.charge.R | 2 inst/tests/runit.hydrophobicity.R | 2 inst/tests/runit.pI.R | 2 man/kidera.Rd | 33 -- man/pI.Rd | 2 22 files changed, 685 insertions(+), 206 deletions(-)
Title: Solving Linear Inverse Models
Description: Functions that (1) find the minimum/maximum of a linear or quadratic function:
min or max (f(x)), where f(x) = ||Ax-b||^2 or f(x) = sum(a_i*x_i)
subject to equality constraints Ex=f and/or inequality constraints Gx>=h,
(2) sample an underdetermined- or overdetermined system Ex=f subject to Gx>=h, and if applicable Ax~=b,
(3) solve a linear system Ax=B for the unknown x. It includes banded and tridiagonal linear systems.
The package calls Fortran functions from 'LINPACK'.
Author: Karline Soetaert [aut, cre],
Karel Van den Meersche [aut],
Dick van Oevelen [aut],
LAPACK authors [cph]
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>
Diff between limSolve versions 1.5.5.1 dated 2014-11-03 and 1.5.5.2 dated 2017-01-16
DESCRIPTION | 24 - MD5 | 46 +-- NAMESPACE | 1 R/ldei.R | 9 R/ldp.R | 6 R/nnls.R | 6 R/varranges.R | 5 R/xranges.R | 5 build/vignette.rds |binary data/Blending.rda |binary data/Chemtax.rda |binary data/E_coli.rda |binary data/Minkdiet.rda |binary data/RigaWeb.rda |binary inst/doc/limSolve.R | 730 +++++++++++++++++++++++++------------------------- inst/doc/limSolve.pdf |binary inst/doc/xsample.R | 22 - inst/doc/xsample.pdf |binary man/E_coli.Rd | 5 man/RigaWeb.rd | 4 man/ldei.Rd | 12 man/ldp.Rd | 2 man/nnls.Rd | 2 src/inverse.f | 59 +++- 24 files changed, 497 insertions(+), 441 deletions(-)
Title: A Set of Methods for Longitudinal Data Objects
Description: A very simple implementation of a class for
longitudinal data.
Author: R. Gentleman
Maintainer: Arthur Allignol <arthur.allignol@uni-ulm.de>
Diff between lgtdl versions 1.1.3 dated 2014-08-10 and 1.1.4 dated 2017-01-16
DESCRIPTION | 16 ++++++---------- MD5 | 8 ++++---- NAMESPACE | 18 +++++++++++++++--- R/lgtdl.R | 4 ++-- man/lgtdl.Rd | 2 +- 5 files changed, 28 insertions(+), 20 deletions(-)
Title: Tools for Biostatistics, Public Policy, and Law
Description: Statistical tests widely utilized in biostatistics, public policy, and law. Along with the well-known tests for equality of means and variances, randomness,
measures of relative variability etc, the package contains new robust tests of symmetry,
omnibus and directional tests of normality, and their graphical counterparts such as
Robust QQ plot; a robust trend tests for variances etc. All implemented tests and methods
are illustrated by simulations and real-life examples from legal statistics, economics,
and biostatistics.
Author: Joseph L. Gastwirth [aut],
Yulia R. Gel [aut],
W. L. Wallace Hui [aut],
Vyacheslav Lyubchich [aut, cre],
Weiwen Miao [aut],
Kimihiro Noguchi [aut]
Maintainer: Vyacheslav Lyubchich <lyubchic@umces.edu>
Diff between lawstat versions 3.0 dated 2015-07-07 and 3.1 dated 2017-01-16
DESCRIPTION | 30 ++++++++++++++--------- MD5 | 16 ++++++------ R/levene.test.R | 5 ++- R/symmetry.test.R | 6 +++- man/bartels.test.Rd | 14 +++++------ man/blackhire.Rd | 7 +---- man/brunner.munzel.test.Rd | 44 +++++++++++++++------------------- man/cd.Rd | 13 +++------- man/symmetry.test.Rd | 57 +++++++++++++++++---------------------------- 9 files changed, 89 insertions(+), 103 deletions(-)
Title: Knowledge Discovery by Accuracy Maximization
Description: An unsupervised and semi-supervised learning algorithm that performs feature extraction from noisy and high-dimensional data.
Author: Stefano Cacciatore, Leonardo Tenori, Claudio Luchinat, Phillip R. Bennett, and David A. MacIntyre
Maintainer: Stefano Cacciatore <tkcaccia@gmail.com>
Diff between KODAMA versions 1.3 dated 2016-12-19 and 1.4 dated 2017-01-16
DESCRIPTION | 10 MD5 | 22 - R/KOD.R | 226 ++++++++---- R/RcppExports.R | 129 +++---- data/MetRef.RData |binary data/USA.RData |binary data/lymphoma.RData |binary inst/doc/KODAMA.Rmd | 2 inst/doc/KODAMA.pdf | 925 ++++++++++++++++++++++++++------------------------- man/knn.double.cv.Rd | 11 man/pls.double.cv.Rd | 10 vignettes/KODAMA.Rmd | 2 12 files changed, 731 insertions(+), 606 deletions(-)
Title: Identify Global Objects in R Expressions
Description: Identifies global ("unknown") objects in R expressions by code
inspection using various strategies, e.g. conservative or liberal. The objective
of this package is to make it as simple as possible to identify global objects
for the purpose of exporting them in distributed compute environments.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between globals versions 0.7.2 dated 2017-01-09 and 0.8.0 dated 2017-01-16
DESCRIPTION | 6 +-- MD5 | 12 +++--- NEWS | 74 +++++++++++++++++++++++------------------- R/findGlobals.R | 93 ++++++++++++++++++++++++++++++++++++++++++------------ R/globalsOf.R | 42 ++++++++++++++++++++++-- man/globalsOf.Rd | 11 +++++- tests/globalsOf.R | 26 +++++++++++++++ 7 files changed, 196 insertions(+), 68 deletions(-)
Title: General-to-Specific (GETS) Modelling and Indicator Saturation
Methods
Description: Automated General-to-Specific (GETS) modelling of the mean and variance of a regression, and indicator saturation methods for detecting and testing for structural breaks in the mean.
Author: Genaro Sucarrat [aut, cre], Felix Pretis [aut], James Reade [aut]
Maintainer: Genaro Sucarrat <genaro.sucarrat@bi.no>
Diff between gets versions 0.9 dated 2016-10-03 and 0.10 dated 2017-01-16
gets-0.10/gets/DESCRIPTION | 10 gets-0.10/gets/MD5 | 74 +++--- gets-0.10/gets/NAMESPACE | 7 gets-0.10/gets/NEWS | 35 +++ gets-0.10/gets/R/arx.R | 135 +++--------- gets-0.10/gets/R/diagnostics.R | 81 +++++-- gets-0.10/gets/R/dropvar.R | 5 gets-0.10/gets/R/gets-internal.R | 10 gets-0.10/gets/R/getsm.R | 413 +++++++++++++++++-------------------- gets-0.10/gets/R/getsv.R | 292 ++++++++++++-------------- gets-0.10/gets/R/isat.R | 81 +++---- gets-0.10/gets/R/isattest.R | 2 gets-0.10/gets/R/isatvar.R | 4 gets-0.10/gets/R/ols.R | 77 +++--- gets-0.10/gets/R/paths.R | 2 gets-0.10/gets/R/plot.arx.R | 11 gets-0.10/gets/R/plot.isat.R | 6 gets-0.10/gets/R/predict.arx.R | 7 gets-0.10/gets/R/predict.gets.R | 2 gets-0.10/gets/R/predict.isat.R | 2 gets-0.10/gets/R/print.arx.R | 50 ++-- gets-0.10/gets/R/print.gets.R | 66 +++-- gets-0.10/gets/R/print.isat.R | 68 ++++-- gets-0.10/gets/R/recursive.R | 8 gets-0.10/gets/R/rsquared.R |only gets-0.10/gets/R/sigma.arx.R |only gets-0.10/gets/R/sigma.gets.R |only gets-0.10/gets/R/sigma.isat.R |only gets-0.10/gets/R/stata.R | 4 gets-0.10/gets/man/arx.Rd | 23 +- gets-0.10/gets/man/coef.arx.Rd | 10 gets-0.10/gets/man/coef.gets.Rd | 7 gets-0.10/gets/man/coef.isat.Rd | 7 gets-0.10/gets/man/diagnostics.Rd | 61 ++++- gets-0.10/gets/man/gets-package.Rd | 14 - gets-0.10/gets/man/getsm.Rd | 52 ++-- gets-0.10/gets/man/isat.Rd | 19 - gets-0.10/gets/man/paths.Rd | 26 +- gets-0.10/gets/man/recursive.Rd | 2 gets-0.9/gets/R/jb.test.R |only gets-0.9/gets/man/jb.test.Rd |only 41 files changed, 899 insertions(+), 774 deletions(-)
Title: Distance Sampling Simulations
Description: Performs distance sampling simulations.It repeatedly generates
instances of a user defined population within a given survey region, generates
realisations of a survey design (currently these must be generated using
Distance software in advance <http://distancesampling.org/>) and simulates
the detection process. The data are then analysed so that the results can
be compared for accuracy and precision across all replications. This will
allow users to select survey designs which will give them the best accuracy
and precision given their expectations about population distribution. Any
uncertainty in population distribution or population parameters can be
included by running the different survey designs for a number of different
population descriptions. An example simulation can be found in the help file for
make.simulation.
Author: Laura Marshall <lhm@st-and.ac.uk>
Maintainer: Laura Marshall <lhm@st-and.ac.uk>
Diff between DSsim versions 1.0.8 dated 2016-11-07 and 1.1.0 dated 2017-01-16
DSsim-1.0.8/DSsim/R/uf.detect.R |only DSsim-1.0.8/DSsim/man/Populatin.Summary-class.Rd |only DSsim-1.1.0/DSsim/DESCRIPTION | 66 - DSsim-1.1.0/DSsim/MD5 | 134 ++- DSsim-1.1.0/DSsim/NAMESPACE | 15 DSsim-1.1.0/DSsim/NEWS | 33 DSsim-1.1.0/DSsim/R/Class.Constructors.R | 388 ++++++++-- DSsim-1.1.0/DSsim/R/DDF.Analysis.R | 11 DSsim-1.1.0/DSsim/R/DDF.Data.R | 15 DSsim-1.1.0/DSsim/R/Density.R | 51 - DSsim-1.1.0/DSsim/R/Detectability.R | 300 ++++++- DSsim-1.1.0/DSsim/R/LT.Design.R | 10 DSsim-1.1.0/DSsim/R/LT.Survey.Results.R | 2 DSsim-1.1.0/DSsim/R/LT.Systematic.Design.R | 169 ++++ DSsim-1.1.0/DSsim/R/PT.Design.R | 10 DSsim-1.1.0/DSsim/R/PT.Nested.Design.R |only DSsim-1.1.0/DSsim/R/PT.Systematic.Design.R | 119 +++ DSsim-1.1.0/DSsim/R/Point.Transect.R | 8 DSsim-1.1.0/DSsim/R/Population.Description.R | 73 - DSsim-1.1.0/DSsim/R/Population.Summary.R | 2 DSsim-1.1.0/DSsim/R/Region.R | 15 DSsim-1.1.0/DSsim/R/Simulation.R | 67 + DSsim-1.1.0/DSsim/R/Single.Obs.LT.Survey.R | 5 DSsim-1.1.0/DSsim/R/Single.Obs.PT.Survey.R | 8 DSsim-1.1.0/DSsim/R/Survey.Results.R | 4 DSsim-1.1.0/DSsim/R/add.covariate.values.R |only DSsim-1.1.0/DSsim/R/add.miss.dists.R |only DSsim-1.1.0/DSsim/R/calculate.fitted.R |only DSsim-1.1.0/DSsim/R/calculate.scale.param.R |only DSsim-1.1.0/DSsim/R/check.covariates.R |only DSsim-1.1.0/DSsim/R/check.sim.setup.R |only DSsim-1.1.0/DSsim/R/data.for.distance.R | 2 DSsim-1.1.0/DSsim/R/description.summary.R | 8 DSsim-1.1.0/DSsim/R/generate.pop.D.R | 2 DSsim-1.1.0/DSsim/R/generate.pop.N.R | 5 DSsim-1.1.0/DSsim/R/generic.functions.R | 5 DSsim-1.1.0/DSsim/R/get.surface.constant.R | 4 DSsim-1.1.0/DSsim/R/get.surface.gam.R | 2 DSsim-1.1.0/DSsim/R/hn.detect.R | 10 DSsim-1.1.0/DSsim/R/hr.detect.R | 19 DSsim-1.1.0/DSsim/R/is.gap.R | 1 DSsim-1.1.0/DSsim/R/rtpois.R |only DSsim-1.1.0/DSsim/R/setcov.R |only DSsim-1.1.0/DSsim/R/simulate.detections.R | 6 DSsim-1.1.0/DSsim/R/single.simulation.loop.R | 158 ++-- DSsim-1.1.0/DSsim/R/store.dht.results.R | 30 DSsim-1.1.0/DSsim/build |only DSsim-1.1.0/DSsim/data/cov_param.rda |only DSsim-1.1.0/DSsim/data/covmod_summary.rda |only DSsim-1.1.0/DSsim/data/trunc_cov_summary.rda |only DSsim-1.1.0/DSsim/data/trunc_summary.rda |only DSsim-1.1.0/DSsim/inst |only DSsim-1.1.0/DSsim/man/DDF.Data-class.Rd | 5 DSsim-1.1.0/DSsim/man/Detectability-class.Rd | 3 DSsim-1.1.0/DSsim/man/Population.Description-class.Rd | 14 DSsim-1.1.0/DSsim/man/Population.Summary-class.Rd |only DSsim-1.1.0/DSsim/man/check.sim.setup.Rd |only DSsim-1.1.0/DSsim/man/cov_param.Rd |only DSsim-1.1.0/DSsim/man/covmod_summary.Rd |only DSsim-1.1.0/DSsim/man/data.for.distance.Rd | 2 DSsim-1.1.0/DSsim/man/generate.transects-methods.Rd | 35 DSsim-1.1.0/DSsim/man/make.ddf.analysis.list.Rd | 16 DSsim-1.1.0/DSsim/man/make.density.Rd | 20 DSsim-1.1.0/DSsim/man/make.design.Rd | 58 + DSsim-1.1.0/DSsim/man/make.detectability.Rd | 66 + DSsim-1.1.0/DSsim/man/make.population.description.Rd | 91 +- DSsim-1.1.0/DSsim/man/make.region.Rd | 22 DSsim-1.1.0/DSsim/man/make.simulation.Rd | 61 + DSsim-1.1.0/DSsim/man/plot.Density-methods.Rd | 5 DSsim-1.1.0/DSsim/man/plot.Detectability-methods.Rd |only DSsim-1.1.0/DSsim/man/plot.Region-methods.Rd | 4 DSsim-1.1.0/DSsim/man/rtpois.Rd |only DSsim-1.1.0/DSsim/man/trunc_cov_summary.Rd |only DSsim-1.1.0/DSsim/man/trunc_summary.Rd |only DSsim-1.1.0/DSsim/tests/testthat/test-BasicLineSimulations.r | 4 DSsim-1.1.0/DSsim/tests/testthat/test-Constructors.r | 16 DSsim-1.1.0/DSsim/tests/testthat/test-Covariates.r |only DSsim-1.1.0/DSsim/tests/testthat/test-NestedPointSimulations.r |only DSsim-1.1.0/DSsim/tests/testthat/test-SystematicDefaultPointSimulations.R |only DSsim-1.1.0/DSsim/tests/testthat/test-SystematicLineSimulations.r |only DSsim-1.1.0/DSsim/vignettes |only 81 files changed, 1675 insertions(+), 504 deletions(-)
Title: The Conditional Probability Function of a Competing Event
Description: Permits to estimate the conditional probability function of a competing event, and to fit, using the temporal process regression or the pseudo-value approach, a proportional-odds model to the conditional probability function (or other models by specifying another link function). See <doi:10.1111/j.1467-9876.2010.00729.x>.
Author: Arthur Allignol
Maintainer: Arthur Allignol <arthur.allignol@uni-ulm.de>
Diff between Cprob versions 1.2.4 dated 2014-12-09 and 1.3 dated 2017-01-16
ChangeLog | 5 + DESCRIPTION | 12 +-- MD5 | 21 +++--- NAMESPACE | 8 +- R/cpf.R | 153 +++++++++++++++++++++----------------------- R/print.cpf.R | 5 - R/print.summary.cpf.R | 5 - R/summary.cpf.R | 2 R/xyplot.cpfpo.R | 12 ++- README.md |only man/cpf.Rd | 2 tests/tests.Cprob.Rout.save | 14 ---- 12 files changed, 117 insertions(+), 122 deletions(-)
Title: Modelling Heterogeneity in Paired Comparison Data
Description: Performs 'BTLLasso', a method to include different types of variables in paired
comparison models and, therefore, to allow for heterogeneity between subjects. Variables can be subject-specific, object-specific and subject-object-specific and
can have an influence on the attractiveness/strength of the objects. Suitable L1 penalty terms are used
to cluster certain effects and to reduce the complexity of the models.
Author: Gunther Schauberger
Maintainer: Gunther Schauberger <gunther@stat.uni-muenchen.de>
Diff between BTLLasso versions 0.1-4 dated 2016-12-02 and 0.1-5 dated 2017-01-16
DESCRIPTION | 8 - MD5 | 78 +++++------ R/BTLLasso-package.R | 158 +++++++++++++++++------ R/BTLLasso.R | 191 ++++++++++++++++------------ R/bin.fit.Cpp.R | 152 ++++++++++------------ R/bootstrap.R | 154 +++++++++++++--------- R/ci.BTLLasso.R | 276 ++++++++++++++++++++++------------------ R/create.design.R | 85 ++++++------ R/cum.fit.Cpp.R | 154 +++++++++------------- R/cv.BTLLasso.R | 109 +++++++++------- R/design.BTLLasso.R | 137 ++++++++++---------- R/fit.BTLLasso.R | 79 ++++++----- R/fit.cv.BTLLasso.R | 125 ++++++++++-------- R/functions.R | 222 ++++++++++++++++---------------- R/paths.R | 233 +++++++++++++++++++--------------- R/penalties.BTLLasso.R | 239 ++++++++++++++++++----------------- R/print.BTLLasso.R | 102 +++++++++++---- R/print.boot.BTLLasso.R | 242 +++++++++++++++++++++++++++++++---- R/print.cv.BTLLasso.R | 189 ++++++++++++++++++--------- R/response.BTLLasso.R | 41 +++--- R/singlepaths.R | 306 ++++++++++++++++++++++++--------------------- data/Buli1516.RData |binary data/GLES.RData |binary data/GLESsmall.RData |binary man/BTLLasso-package.Rd | 45 ++++-- man/BTLLasso.Rd | 47 ++++-- man/Buli1516.Rd | 21 ++- man/GLES.Rd | 12 + man/GLESsmall.Rd | 31 +++- man/SimData.Rd | 48 ++++++- man/boot.BTLLasso.Rd | 45 ++++-- man/ci.BTLLasso.Rd | 45 ++++-- man/ctrl.BTLLasso.Rd | 48 ++++--- man/cv.BTLLasso.Rd | 51 ++++--- man/paths.Rd | 57 +++++--- man/print.BTLLasso.Rd | 73 ++++++++-- man/print.boot.BTLLasso.Rd | 78 +++++++++-- man/print.cv.BTLLasso.Rd | 75 ++++++++--- man/response.BTLLasso.Rd | 4 man/singlepaths.Rd | 51 ++++--- 40 files changed, 2451 insertions(+), 1560 deletions(-)
Title: Tools for Survey Statistics in Educational Assessment
Description:
Contains tools for survey statistics (especially in educational
assessment) for datasets with replication designs (jackknife,
bootstrap, replicate weights). Descriptive statistics, linear
and logistic regression, path models for manifest variables
with measurement error correction and two-level hierarchical
regressions for weighted samples are included. Statistical
inference can be conducted for multiply imputed datasets and
nested multiply imputed datasets.
This package is developed by BIFIE (Federal Institute for
Educational Research, Innovation and Development of the Austrian
School System; Salzburg, Austria).
Author:
BIFIE
Maintainer:
Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between BIFIEsurvey versions 1.11-0 dated 2016-10-18 and 1.12-0 dated 2017-01-16
DESCRIPTION | 14 ++--- MD5 | 102 ++++++++++++++++++------------------- NAMESPACE | 61 ++++++++++------------ R/BIFIE.BIFIEdata2datalist.R | 2 R/BIFIE.bifiedata2bifiecdata.R | 7 +- R/BIFIE.by.R | 50 +++++++++--------- R/BIFIE.cdata.select.R |only R/BIFIE.correl.R | 2 R/BIFIE.crosstab.R | 2 R/BIFIE.data.R | 2 R/BIFIE.data.boot.R | 2 R/BIFIE.data.jack.R | 4 - R/BIFIE.data.select.R | 84 ------------------------------ R/BIFIE.data.transform.R | 6 +- R/BIFIE.derivedParameters.R | 2 R/BIFIE.ecdf.R | 2 R/BIFIE.freq.R | 2 R/BIFIE.hist.R | 4 - R/BIFIE.linreg.R | 4 - R/BIFIE.logistreg.R | 4 - R/BIFIE.mva.R | 11 +-- R/BIFIE.pathmodel.R | 2 R/BIFIE.progressbar.R | 2 R/BIFIE.summary.R | 2 R/BIFIE.twolevelreg.R | 35 +++++++++--- R/BIFIE.univar.R | 2 R/BIFIE.univar.test.R | 2 R/BIFIE.waldtest.R | 44 +++++++-------- R/BIFIE_NMI_inference_parameters.R | 2 R/BIFIE_by_helper_pureR.R | 2 R/BIFIE_table_multiple_groupings.R | 2 R/BIFIEdata.select.R |only R/bifietable.R | 14 ++--- R/cdata.wgtrep.R | 2 R/clean_summary_table.R | 2 R/coef.BIFIEsurvey.R | 2 R/create_summary_table.R | 2 R/extract.replicated.pars.R | 2 R/load.BIFIE.data.R | 2 R/load.BIFIEdata.files.R | 2 R/print.object.summary.R | 2 R/rubin_calc_df.R | 2 R/save.BIFIE.data.R | 2 R/summary.BIFIE.data.R | 2 R/vcov.BIFIE.survey.R | 2 R/write.BIFIE.data.R | 2 R/zzz.R | 6 +- inst/CITATION | 9 +-- inst/NEWS | 16 +++++ man/BIFIE.twolevelreg.Rd | 34 +++++++++++- man/BIFIEsurvey-package.Rd | 4 - src/univar.cpp | 48 ++++++++++------- src/univar_helpers.h | 41 +++++++++++--- 53 files changed, 336 insertions(+), 324 deletions(-)
Title: An Implementation of Parsing and Writing Configuration File
(JSON/INI/YAML)
Description:
Implements the YAML parser, JSON parser and INI parser for R setting and writing of configuration file. The functionality of this package is similar to that of package 'config'.
Author: Jianfeng Li [aut, cre]
Maintainer: Jianfeng Li <lee_jianfeng@sjtu.edu.cn>
Diff between configr versions 0.0.2 dated 2017-01-15 and 0.0.3 dated 2017-01-16
configr-0.0.2/configr/man/eval.config.merge.groups.Rd |only configr-0.0.2/configr/tests/testthat/test_main.R |only configr-0.0.3/configr/DESCRIPTION | 8 +-- configr-0.0.3/configr/MD5 | 44 +++++++++--------- configr-0.0.3/configr/NAMESPACE | 4 - configr-0.0.3/configr/R/configr.R | 13 ++++- configr-0.0.3/configr/R/configtype.R | 28 +++++++---- configr-0.0.3/configr/R/merge.R | 29 ++++++++--- configr-0.0.3/configr/R/read.R | 40 +++++++++++----- configr-0.0.3/configr/R/utils.R | 4 + configr-0.0.3/configr/R/write.R | 35 +++++++++----- configr-0.0.3/configr/README.md | 12 +++- configr-0.0.3/configr/man/config.list.merge.Rd | 7 ++ configr-0.0.3/configr/man/configr.Rd | 10 ++++ configr-0.0.3/configr/man/eval.config.Rd | 19 +++++-- configr-0.0.3/configr/man/eval.config.groups.Rd | 11 ++-- configr-0.0.3/configr/man/eval.config.merge.Rd |only configr-0.0.3/configr/man/get.config.type.Rd | 13 +++-- configr-0.0.3/configr/man/is.ini.file.Rd | 7 ++ configr-0.0.3/configr/man/is.json.file.Rd | 7 ++ configr-0.0.3/configr/man/is.yaml.file.Rd | 7 ++ configr-0.0.3/configr/man/read.config.Rd | 11 +++- configr-0.0.3/configr/man/write.config.Rd | 25 ++++++---- configr-0.0.3/configr/tests/testthat/test_merge.R |only configr-0.0.3/configr/tests/testthat/test_read.R |only configr-0.0.3/configr/tests/testthat/test_write.R |only 26 files changed, 224 insertions(+), 110 deletions(-)
Title: Rendering Parameterized SQL and Translation to Dialects
Description: A rendering tool for parameterized SQL that also translates into
different SQL dialects. These dialects include Sql Server, Oracle,
PostgreSql, Amazon RedShift, and Microsoft PDW.
Author: Martijn J. Schuemie [aut, cre],
Marc A. Suchard [aut],
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between SqlRender versions 1.1.7 dated 2016-08-16 and 1.2.0 dated 2017-01-16
DESCRIPTION | 8 +-- MD5 | 22 ++++---- NEWS | 14 +++++ R/RenderSql.R | 2 README.md | 12 +++- inst/csv/replacementPatterns.csv | 52 +++++++++++++++++++- inst/doc/UsingSqlRender.Rmd | 3 - inst/doc/UsingSqlRender.pdf |binary inst/java/SqlRender.jar |binary man/translateSql.Rd | 2 tests/testthat/test-translateSql.R | 96 +++++++++++++++++++++++++++++++++++++ vignettes/UsingSqlRender.Rmd | 3 - 12 files changed, 191 insertions(+), 23 deletions(-)
Title: Finding Files in Project Subdirectories
Description: Robust, reliable and flexible paths to files below a
project root. The 'root' of a project is defined as a directory
that matches a certain criterion, e.g., it contains a certain
regular file.
Author: Kirill Müller [aut, cre]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between rprojroot versions 1.1 dated 2016-10-29 and 1.2 dated 2017-01-16
DESCRIPTION | 6 - MD5 | 40 ++++++----- NAMESPACE | 6 + NEWS.md | 18 +++++ R/criterion.R | 83 +++++++++++++++-------- R/file.R | 14 +-- R/has-file.R | 104 ++++++++++++++++++++++++----- R/root.R | 37 +++++++--- R/rprojroot-package.R | 5 - build/vignette.rds |binary inst/doc/rprojroot.html | 106 ++++++++++++++++++------------ man/criteria.Rd | 30 +++++++- man/find_root.Rd | 14 ++- man/find_root_file.Rd | 21 ++--- man/root_criterion.Rd | 61 ++++++++++------- man/rprojroot-package.Rd | 18 ++++- tests/testthat/hierarchy/a/remake.yml |only tests/testthat/hierarchy/hierarchy.Rproj |only tests/testthat/test-criterion.R | 14 ++- tests/testthat/test-root.R | 109 ++++++++++++++++++++++++++++--- tests/testthat/test-testthat.R | 5 + tests/testthat/vcs |only 22 files changed, 503 insertions(+), 188 deletions(-)
Title: Inverse-Regression Estimation of Radioactive Doses
Description: Radioactive doses estimation using individual chromosomal aberrations information. See Higueras M, Puig P, Ainsbury E, Rothkamm K. (2015) <DOI:10.1098/rspa.2014.0588>.
Author: David Moriña (Catalan Institute of Oncology), Manuel Higueras (Newcastle University) and Pedro Puig (Universitat Autònoma de Barcelona)
Maintainer: David Moriña Soler <david.morina@uab.cat>
Diff between radir versions 1.0.1 dated 2015-10-22 and 1.0.2 dated 2017-01-16
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- R/dose.distr.R | 7 ++++--- inst/CITATION | 8 ++++---- 4 files changed, 17 insertions(+), 16 deletions(-)
Title: Distributed Lag Non-Linear Models
Description: Collection of functions for distributed lag linear and non-linear models.
Author: Antonio Gasparrini [aut, cre],
Ben Armstrong [aut],
Fabian Scheipl [ctb]
Maintainer: Antonio Gasparrini <antonio.gasparrini@lshtm.ac.uk>
Diff between dlnm versions 2.2.6 dated 2016-05-10 and 2.3.2 dated 2017-01-16
dlnm-2.2.6/dlnm/inst/ChangeLog |only dlnm-2.3.2/dlnm/DESCRIPTION | 19 dlnm-2.3.2/dlnm/MD5 | 177 +- dlnm-2.3.2/dlnm/NAMESPACE | 142 +- dlnm-2.3.2/dlnm/NEWS.md |only dlnm-2.3.2/dlnm/R/Predict.matrix.cb.smooth.R |only dlnm-2.3.2/dlnm/R/cbPen.R |only dlnm-2.3.2/dlnm/R/checkcrossbasis.R | 4 dlnm-2.3.2/dlnm/R/checkgroup.R | 6 dlnm-2.3.2/dlnm/R/checkonebasis.R | 22 dlnm-2.3.2/dlnm/R/coef.crosspred.R | 5 dlnm-2.3.2/dlnm/R/coef.crossreduce.R | 5 dlnm-2.3.2/dlnm/R/cr.R |only dlnm-2.3.2/dlnm/R/crossbasis.R | 206 +-- dlnm-2.3.2/dlnm/R/crosspred.R | 34 dlnm-2.3.2/dlnm/R/crossreduce.R | 328 ++-- dlnm-2.3.2/dlnm/R/equalknots.R | 2 dlnm-2.3.2/dlnm/R/exphist.R | 47 dlnm-2.3.2/dlnm/R/fci.R | 2 dlnm-2.3.2/dlnm/R/findrank.R |only dlnm-2.3.2/dlnm/R/getcoef.R | 2 dlnm-2.3.2/dlnm/R/getlink.R | 2 dlnm-2.3.2/dlnm/R/getvcov.R | 2 dlnm-2.3.2/dlnm/R/integer.R | 64 dlnm-2.3.2/dlnm/R/lin.R | 2 dlnm-2.3.2/dlnm/R/lines.crosspred.R | 2 dlnm-2.3.2/dlnm/R/lines.crossreduce.R | 2 dlnm-2.3.2/dlnm/R/logknots.R | 2 dlnm-2.3.2/dlnm/R/mkXpred.R | 100 - dlnm-2.3.2/dlnm/R/mkaddSlag.R |only dlnm-2.3.2/dlnm/R/mkat.R | 58 dlnm-2.3.2/dlnm/R/mkcen.R | 51 dlnm-2.3.2/dlnm/R/mklag.R | 2 dlnm-2.3.2/dlnm/R/onAttach.R | 34 dlnm-2.3.2/dlnm/R/onebasis.R | 6 dlnm-2.3.2/dlnm/R/plot.crosspred.R | 4 dlnm-2.3.2/dlnm/R/plot.crossreduce.R | 2 dlnm-2.3.2/dlnm/R/points.crosspred.R | 2 dlnm-2.3.2/dlnm/R/points.crossreduce.R | 2 dlnm-2.3.2/dlnm/R/poly.R | 2 dlnm-2.3.2/dlnm/R/ps.R |only dlnm-2.3.2/dlnm/R/seqlag.R | 2 dlnm-2.3.2/dlnm/R/smooth.construct.cb.smooth.spec.R |only dlnm-2.3.2/dlnm/R/strata.R | 2 dlnm-2.3.2/dlnm/R/summary.crossbasis.R | 70 - dlnm-2.3.2/dlnm/R/summary.crosspred.R | 2 dlnm-2.3.2/dlnm/R/summary.crossreduce.R | 2 dlnm-2.3.2/dlnm/R/summary.onebasis.R | 42 dlnm-2.3.2/dlnm/R/thr.R | 2 dlnm-2.3.2/dlnm/R/vcov.crosspred.R | 2 dlnm-2.3.2/dlnm/R/vcov.crossreduce.R | 2 dlnm-2.3.2/dlnm/README.md |only dlnm-2.3.2/dlnm/build/vignette.rds |binary dlnm-2.3.2/dlnm/inst/CITATION | 34 dlnm-2.3.2/dlnm/inst/Changesince151 | 70 - dlnm-2.3.2/dlnm/inst/Changesince200 | 86 - dlnm-2.3.2/dlnm/inst/Changesince220 | 44 dlnm-2.3.2/dlnm/inst/NEWS |only dlnm-2.3.2/dlnm/inst/doc/dlnmExtended.R | 119 + dlnm-2.3.2/dlnm/inst/doc/dlnmExtended.Rnw | 1123 +++++++++-------- dlnm-2.3.2/dlnm/inst/doc/dlnmExtended.pdf |binary dlnm-2.3.2/dlnm/inst/doc/dlnmOverview.R | 143 -- dlnm-2.3.2/dlnm/inst/doc/dlnmOverview.Rnw | 817 ++++-------- dlnm-2.3.2/dlnm/inst/doc/dlnmOverview.pdf |binary dlnm-2.3.2/dlnm/inst/doc/dlnmPenalized.R |only dlnm-2.3.2/dlnm/inst/doc/dlnmPenalized.Rnw |only dlnm-2.3.2/dlnm/inst/doc/dlnmPenalized.pdf |only dlnm-2.3.2/dlnm/inst/doc/dlnmTS.R | 3 dlnm-2.3.2/dlnm/inst/doc/dlnmTS.Rnw | 911 ++++++------- dlnm-2.3.2/dlnm/inst/doc/dlnmTS.pdf |binary dlnm-2.3.2/dlnm/man/cbPen.Rd |only dlnm-2.3.2/dlnm/man/chicagoNMMAPS.Rd | 108 - dlnm-2.3.2/dlnm/man/coef.crosspred.Rd | 70 - dlnm-2.3.2/dlnm/man/cr.Rd |only dlnm-2.3.2/dlnm/man/crossbasis.Rd | 280 ++-- dlnm-2.3.2/dlnm/man/crosspred.Rd | 423 +++--- dlnm-2.3.2/dlnm/man/crossreduce.Rd | 272 ++-- dlnm-2.3.2/dlnm/man/dlnm-internal.Rd | 203 +-- dlnm-2.3.2/dlnm/man/dlnm-package.Rd | 44 dlnm-2.3.2/dlnm/man/drug.Rd | 86 - dlnm-2.3.2/dlnm/man/equalknots.Rd | 106 - dlnm-2.3.2/dlnm/man/exphist.Rd | 128 - dlnm-2.3.2/dlnm/man/integer.Rd | 96 - dlnm-2.3.2/dlnm/man/lin.Rd | 106 - dlnm-2.3.2/dlnm/man/logknots.Rd | 146 +- dlnm-2.3.2/dlnm/man/nested.Rd | 90 - dlnm-2.3.2/dlnm/man/onebasis.Rd | 244 +-- dlnm-2.3.2/dlnm/man/plot.crosspred.Rd | 354 +++-- dlnm-2.3.2/dlnm/man/plot.crossreduce.Rd | 208 +-- dlnm-2.3.2/dlnm/man/poly.Rd | 116 - dlnm-2.3.2/dlnm/man/ps.Rd |only dlnm-2.3.2/dlnm/man/smooth.construct.cb.smooth.spec.Rd |only dlnm-2.3.2/dlnm/man/strata.Rd | 124 - dlnm-2.3.2/dlnm/man/thr.Rd | 120 - dlnm-2.3.2/dlnm/vignettes/biblioVignette.bib | 134 +- dlnm-2.3.2/dlnm/vignettes/dlnmExtended.Rnw | 1123 +++++++++-------- dlnm-2.3.2/dlnm/vignettes/dlnmOverview.Rnw | 817 ++++-------- dlnm-2.3.2/dlnm/vignettes/dlnmPenalized.Rnw |only dlnm-2.3.2/dlnm/vignettes/dlnmTS.Rnw | 911 ++++++------- 99 files changed, 5571 insertions(+), 5554 deletions(-)
Title: 'Pubmed' Word Clouds
Description: Create a word cloud using the abstract of publications from 'Pubmed'.
Author: Felix Yanhui Fan <nolanfyh@gmail.com>
Maintainer: Felix Yanhui Fan <nolanfyh@gmail.com>
Diff between PubMedWordcloud versions 0.3.2 dated 2014-10-15 and 0.3.3 dated 2017-01-16
DESCRIPTION | 13 ++- MD5 | 33 ++++----- NAMESPACE | 28 ++++---- R/cleanAbstracts.R | 94 +++++++++++++-------------- R/colSets.R | 43 ++++++------ R/editPMIDs.R | 66 +++++++++---------- R/getAbstracts.R | 64 ++++++++++-------- R/getPMIDs.R | 102 ++++++++++++++++------------- R/getPMIDsByKeyWords.R | 157 ++++++++++++++++++++++++---------------------- R/plotWordCloud.R | 49 +++++++------- README.md |only man/cleanAbstracts.Rd | 75 +++++++++++---------- man/colSets.Rd | 39 +++++------ man/editPMIDs.Rd | 71 ++++++++++---------- man/getAbstracts.Rd | 57 ++++++++-------- man/getPMIDs.Rd | 63 +++++++++--------- man/getPMIDsByKeyWords.Rd | 81 ++++++++++++----------- man/plotWordCloud.Rd | 77 +++++++++++----------- 18 files changed, 576 insertions(+), 536 deletions(-)
More information about PubMedWordcloud at CRAN
Permanent link
Title: Multivariate Outlier Detection Based on Robust Methods
Description: Various Methods for Multivariate Outlier Detection.
Author: Peter Filzmoser <P.Filzmoser@tuwien.ac.at> and
Moritz Gschwandtner <e0125439@student.tuwien.ac.at>
Maintainer: P. Filzmoser <P.Filzmoser@tuwien.ac.at>
Diff between mvoutlier versions 2.0.6 dated 2015-01-30 and 2.0.8 dated 2017-01-16
DESCRIPTION | 14 ++-- MD5 | 28 ++++----- NAMESPACE | 24 ++++++-- R/mvoutlier.CoDa.R | 134 ++++++++++++++++++----------------------------- data/X.rda |binary data/Y.rda |binary data/bhorizon.rda |binary data/bss.background.rda |binary data/bssbot.rda |binary data/bsstop.rda |binary data/chorizon.rda |binary data/dat.rda |binary data/humus.rda |binary data/kola.background.rda |binary data/moss.rda |binary 15 files changed, 94 insertions(+), 106 deletions(-)
Title: A Code Converter from the Matlab/Octave Language to R
Description: Transferring over a code base from Matlab to R is often a repetitive
and inefficient use of time. This package provides a translator for Matlab /
Octave code into R code. It does some syntax changes, but most of the heavy
lifting is in the function changes since the languages are so similar.
Options for different data structures and the functions that can be changed
are given. The Matlab code should be mostly in adherence to the standard
style guide but some effort has been made to accommodate different number of
spaces and other small syntax issues. This will not make the code more R
friendly and may not even run afterwards. However, the rudimentary syntax,
base function and data structure conversion is done quickly so that the
maintainer can focus on changes to the design structure.
Author: Siddarta Jairam [aut, cre],
David Hiebeler [ctb]
Maintainer: Siddarta Jairam <sidjsb@gmail.com>
Diff between matconv versions 0.3.0 dated 2016-01-13 and 0.3.2 dated 2017-01-16
DESCRIPTION | 6 +- MD5 | 26 +++++------ R/convEasySyntax.R | 9 ++++ R/convFunctionCalls.R | 85 ++++++++++++++++++++++++++------------- R/convMatSyntax.R | 12 +++-- R/utils.R | 75 ++++++++++++++++++++++++++++++++++ README.md | 15 ++++++ build/vignette.rds |binary inst/doc/basicSyntax.html | 14 ++++-- inst/doc/functionCalls.html | 16 ++++--- inst/doc/overallUse.html | 22 ++++------ tests/testthat/test-easySyntax.R | 15 ++++++ tests/testthat/test-flag.R | 7 +++ tests/testthat/test-funcMaps.R | 61 +++++++++++++++++++++++++++ 14 files changed, 291 insertions(+), 72 deletions(-)