Title: Functions to Calculate Relatedness on Diploid Genetic Data
Description: Functions to calculate pairwise relatedness on diploid genetic datasets. Different estimators for relatedness can be combined with information on geographical distances. Information on heterozygosity, allele- and genotype diversity as well as genetic F-statistics are provided for each population.
Author: Philipp Kraemer [aut, cre],
Gabriele Gerlach [aut]
Maintainer: Philipp Kraemer <Philipp.Kraemer@uni-oldenburg.de>
Diff between Demerelate versions 0.9-1 dated 2016-08-31 and 0.9-2 dated 2017-01-23
Demerelate-0.9-1/Demerelate/R/loiselle.w.R |only Demerelate-0.9-1/Demerelate/R/morans.R |only Demerelate-0.9-1/Demerelate/R/morans.fin.w.R |only Demerelate-0.9-1/Demerelate/R/random.pairs.R |only Demerelate-0.9-1/Demerelate/R/ritland.w.R |only Demerelate-0.9-1/Demerelate/R/wang.fin.R |only Demerelate-0.9-1/Demerelate/man/random.pairs.Rd |only Demerelate-0.9-2/Demerelate/DESCRIPTION | 10 Demerelate-0.9-2/Demerelate/MD5 | 75 - Demerelate-0.9-2/Demerelate/R/Bxy.R | 27 Demerelate-0.9-2/Demerelate/R/Demerelate.R | 486 ++++++------ Demerelate-0.9-2/Demerelate/R/Emp.calc.R | 113 +- Demerelate-0.9-2/Demerelate/R/Fis.calc.R | 354 ++++----- Demerelate-0.9-2/Demerelate/R/Li.R | 25 Demerelate-0.9-2/Demerelate/R/Loci.test.R | 62 + Demerelate-0.9-2/Demerelate/R/Mxy.R | 19 Demerelate-0.9-2/Demerelate/R/Sxy.R | 17 Demerelate-0.9-2/Demerelate/R/allele.sharing.R | 58 - Demerelate-0.9-2/Demerelate/R/glm.prep.R | 4 Demerelate-0.9-2/Demerelate/R/loiselle.R | 31 Demerelate-0.9-2/Demerelate/R/lxy.R | 42 - Demerelate-0.9-2/Demerelate/R/lxy.w.R | 28 Demerelate-0.9-2/Demerelate/R/morans.fin.R | 27 Demerelate-0.9-2/Demerelate/R/morans.w.R | 21 Demerelate-0.9-2/Demerelate/R/offspring.R | 39 - Demerelate-0.9-2/Demerelate/R/relate.calc.R | 151 +-- Demerelate-0.9-2/Demerelate/R/ritland.R | 34 Demerelate-0.9-2/Demerelate/R/rxy.R | 42 - Demerelate-0.9-2/Demerelate/R/stat.pops.R | 681 +++++++++--------- Demerelate-0.9-2/Demerelate/R/wang.R | 18 Demerelate-0.9-2/Demerelate/R/wang.compose.R | 12 Demerelate-0.9-2/Demerelate/R/wang.fin.w.R | 14 Demerelate-0.9-2/Demerelate/R/wang.w.R | 19 Demerelate-0.9-2/Demerelate/man/Demerelate-package.Rd | 202 ++--- Demerelate-0.9-2/Demerelate/man/Demerelate.Rd | 6 Demerelate-0.9-2/Demerelate/man/Emp.calc.Rd | 1 Demerelate-0.9-2/Demerelate/man/Similarity.Index.Rd | 16 Demerelate-0.9-2/Demerelate/man/allele.sharing.Rd | 5 Demerelate-0.9-2/Demerelate/man/glm.prep.Rd | 5 Demerelate-0.9-2/Demerelate/man/offspring.Rd | 5 Demerelate-0.9-2/Demerelate/man/relate.calc.Rd | 5 Demerelate-0.9-2/Demerelate/man/stat.pops.Rd | 5 42 files changed, 1353 insertions(+), 1306 deletions(-)
Title: Continuous Time Structural Equation Modelling
Description: A multivariate continuous (and discrete) time dynamic modelling
package for panel and time series data, using linear stochastic differential
equations. Contains a faster frequentist set of functions using OpenMx for
single subject and mixed-effects (random intercepts only) structural
equation models, or a hierarchical Bayesian implementation using Stan that
allows for random effects over all model parameters. Allows for modelling of
multiple noisy measurements of multiple stochastic processes, time varying
input / event covariates, and time invariant covariates used to predict the
parameters.
Author: Charles Driver [aut, cre, cph],
Manuel Voelkle [aut, cph],
Han Oud [aut, cph]
Maintainer: Charles Driver <driver@mpib-berlin.mpg.de>
Diff between ctsem versions 2.1.1 dated 2017-01-07 and 2.2.0 dated 2017-01-23
DESCRIPTION | 10 MD5 | 90 +- NAMESPACE | 1 NEWS | 25 R/carefulFit.R |only R/ctDataHelp.R | 78 + R/ctFit.R | 1240 ++++++++++------------------- R/ctGenerate.R | 17 R/ctIntervalise.R | 35 R/ctLabel.R | 27 R/ctLongtowide.r | 77 - R/ctModel.R | 66 - R/ctMultigroupFit.R | 8 R/ctStanFit.R | 193 ++-- R/ctStanKalman.R | 3 R/ctStanModel.R | 30 R/ctStanSummary.R | 22 R/ctWideToLong.R | 75 - R/ctsem.R | 2 R/ctsemUtils.R | 2 R/plot.ctsemFit.R | 163 +-- R/summary.ctsemFit.R | 48 - data/ctExample2.rda |binary data/datastructure.rda |binary data/longexample.rda |binary inst/doc/ctsem.R | 66 - inst/doc/ctsem.pdf |binary inst/doc/ctsem.rnw | 93 -- inst/doc/hierarchical.pdf |binary man/ctExample2.Rd | 33 man/ctFit.Rd | 44 - man/ctGenerate.Rd | 4 man/ctIntervalise.Rd | 6 man/ctLongToWide.Rd | 6 man/ctModel.Rd | 25 man/ctMultigroupFit.Rd | 6 man/ctStanFit.Rd | 3 man/ctStanKalman.Rd | 3 man/ctStanModel.Rd |only man/datastructure.Rd | 26 man/longexample.Rd | 22 man/plot.ctStanFit.Rd | 2 tests/testthat/bayesvsfreq.R |only tests/testthat/bayesvsfreqtrait.R |only tests/testthat/bayesvsfreqtraitdual.R |only tests/testthat/bayesvsfreqtraitdualoptim.R |only tests/testthat/test-intervalise.R | 8 vignettes/ctsem-concordance.tex |only vignettes/ctsem.rnw | 93 -- vignettes/hierarchical-concordance.tex |only 50 files changed, 1283 insertions(+), 1369 deletions(-)
Title: Quantile Regression for Random Variables on the Unit Interval
Description: Employs a two-parameter family of
distributions for modelling random variables on the (0, 1) interval by
applying the cumulative distribution function (cdf) of one parent
distribution to the quantile function of another.
Author: Yiyun Shou [aut, cre],
Michael Smithson [aut]
Maintainer: Yiyun Shou <yiyun.shou@anu.edu.au>
Diff between cdfquantreg versions 1.1.0 dated 2016-11-22 and 1.1.1 dated 2017-01-23
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 1 + NEWS | 7 +++++++ R/cdfquantreg.R | 3 ++- R/qrFamily.R | 20 ++++++++++++-------- R/qrLogLikFun.R | 5 +++-- R/qrMethod.R | 20 +++++++++++++++++--- build/vignette.rds |binary man/summary.cdfqr.Rd | 3 +++ 10 files changed, 58 insertions(+), 27 deletions(-)
Title: 'Webdriver'/'Selenium' Binary Manager
Description: There are a number of binary files associated with the
'Webdriver'/'Selenium' project (see <http://www.seleniumhq.org/download/>,
<https://sites.google.com/a/chromium.org/chromedriver/>,
<https://github.com/mozilla/geckodriver>,
<http://phantomjs.org/download.html> and
<https://github.com/SeleniumHQ/selenium/wiki/InternetExplorerDriver> for
more information). This package provides functions to download these
binaries and to manage processes involving them.
Author: John Harrison [aut, cre] (R package wdman)
Maintainer: John Harrison <johndharrison0@gmail.com>
Diff between wdman versions 0.2.1 dated 2017-01-20 and 0.2.2 dated 2017-01-23
DESCRIPTION | 6 ++--- MD5 | 28 +++++++++++------------ NEWS.md | 6 ++++- R/chrome.R | 26 ++++++++-------------- R/gecko.R | 29 +++++++----------------- R/iedriver.R | 31 +++++++------------------- R/phantom.R | 30 ++++++++----------------- R/selenium.R | 42 ++++++++++++----------------------- R/utils.R | 48 +++++++++++++++++++++++++++++++---------- README.md | 14 ----------- inst/doc/basics.Rmd | 15 ------------ inst/doc/basics.html | 11 +-------- tests/testthat/test-selenium.R | 15 ++++++++---- tests/testthat/test-utils.R | 32 +++++++++++++++++++++++++++ vignettes/basics.Rmd | 15 ------------ 15 files changed, 156 insertions(+), 192 deletions(-)
Title: TH's Data Archive
Description: Contains data sets used in other packages Torsten Hothorn
maintains.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between TH.data versions 1.0-7 dated 2016-01-28 and 1.0-8 dated 2017-01-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- data/geyser.rda |binary data/mammoexp.rda |binary demo/PROACT.R | 4 ++-- 5 files changed, 10 insertions(+), 10 deletions(-)
Title: Conditional Formatting in Data Frames
Description: Apply and visualize conditional formatting to data frames in R.
It renders a data frame with cells formatted according to
criteria defined by rules, using a syntax similar to 'ggplot2'. The table is
printed either opening a web browser or within the 'RStudio' viewer if
available. The conditional formatting rules allow to highlight cells
matching a condition or add a gradient background to a given column. This
package supports both 'HTML' and 'LaTeX' outputs in 'knitr' reports, and
exporting to an 'xlsx' file.
Author: Sergio Oller Moreno [aut, cph, cre]
Maintainer: Sergio Oller Moreno <sergioller@gmail.com>
Diff between condformat versions 0.4.0 dated 2016-07-25 and 0.5.0 dated 2017-01-23
DESCRIPTION | 15 +-- MD5 | 55 +++++++----- NAMESPACE | 29 +----- NEWS | 10 ++ R/condformat.R | 7 + R/condformat_render.R | 79 +++++++++++++----- R/rule_fill_discrete.R | 132 ++++++++++++++++++++----------- R/rule_fill_gradient.R | 79 ++++++++++-------- R/rule_fill_gradient2.R | 89 +++++++++++--------- R/rule_helper.R | 28 ++++++ R/shiny.R |only R/show_columns.R | 3 R/show_rows.R | 3 README.md | 2 build/vignette.rds |binary inst/doc/introduction.html | 11 -- inst/shinyexample |only man/condformat-shiny.Rd |only man/condformat2html.Rd | 2 man/condformat2widget.Rd |only man/plus-.condformat_tbl.Rd | 2 man/print.condformat_tbl.Rd | 2 man/reexports.Rd |only man/rule_fill_discrete.Rd | 29 +----- man/rule_fill_discrete_.Rd |only man/rule_fill_gradient.Rd | 31 ++----- man/rule_fill_gradient2.Rd | 32 ++----- man/rule_fill_gradient2_.Rd |only man/rule_fill_gradient_.Rd |only tests/testthat/test_rendering.R | 8 + tests/testthat/test_rule_fill_discrete.R | 48 +++++++++-- tests/testthat/test_rule_fill_gradient.R | 40 +++++++-- 32 files changed, 438 insertions(+), 298 deletions(-)
Title: Partitioning Chi-Squared and Tau Index for Three-Way Contingency
Tables
Description: Provides two index partitions for three-way contingency tables:
partition of the association measure chi-squared and of the predictability index tau
under several representative hypotheses about the expected frequencies (hypothesized probabilities).
Author: Rosaria Lombardo, Yoshio Takane and Eric J Beh
Maintainer: Rosaria Lombardo <rosaria.lombardo@unina2.it>
Diff between chi2x3way versions 1.0 dated 2016-12-13 and 1.1 dated 2017-01-23
chi2x3way-1.0/chi2x3way/R/Chi2for3way.R |only chi2x3way-1.0/chi2x3way/R/chi3class.R |only chi2x3way-1.0/chi2x3way/R/print.Chi2for3way.R |only chi2x3way-1.0/chi2x3way/man/Chi2for3way.Rd |only chi2x3way-1.0/chi2x3way/man/chi3class-class.Rd |only chi2x3way-1.0/chi2x3way/man/print.Chi2for3way.Rd |only chi2x3way-1.1/chi2x3way/DESCRIPTION | 10 +++++----- chi2x3way-1.1/chi2x3way/MD5 | 14 ++++++-------- chi2x3way-1.1/chi2x3way/NAMESPACE | 7 +------ chi2x3way-1.1/chi2x3way/R/chi2x3way.R |only chi2x3way-1.1/chi2x3way/R/print.chi2x3way.R |only chi2x3way-1.1/chi2x3way/man/chi2x3way.Rd |only chi2x3way-1.1/chi2x3way/man/print.chi2x3way.Rd |only 13 files changed, 12 insertions(+), 19 deletions(-)
Title: R Wrapper for Java Implementation of BiBit
Description: A simple R wrapper for the Java BiBit algorithm from "A
biclustering algorithm for extracting bit-patterns from binary datasets"
from Domingo et al. (2011) <DOI:10.1093/bioinformatics/btr464>. An simple adaption for the BiBit algorithm which allows noise in the biclusters is also introduced. Further, a workflow to guide the algorithm towards given patterns is included as well.
Author: De Troyer Ewoud
Maintainer: De Troyer Ewoud <ewoud.detroyer@uhasselt.be>
Diff between BiBitR versions 0.1.0 dated 2016-11-30 and 0.2.1 dated 2017-01-23
DESCRIPTION | 10 MD5 | 23 +- NAMESPACE | 8 R/bibit.R | 517 +++++++++++++++++++++++++++++++++++++++++++++++- R/utilities.R | 241 ++++++++++++++++++++++ README.md | 8 inst/java/BiBit3.jar |only java/BiBit3 |only man/GOF.Rd |only man/bibit.Rd | 3 man/bibit2.Rd | 10 man/bibit3.Rd |only man/bibit3_patternBC.Rd |only 13 files changed, 795 insertions(+), 25 deletions(-)
Title: Partition-Assisted Clustering and Multiple Alignments of
Networks
Description: Implements Partition-Assisted Clustering and Multiple Alignments of Networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set.
Author: Ye Henry Li, Dangna Li
Maintainer: Ye Henry Li <ywli@stanford.edu>
Diff between PAC versions 1.0.5 dated 2016-04-10 and 1.0.6 dated 2017-01-23
PAC-1.0.5/PAC/R/clusterNames.R |only PAC-1.0.5/PAC/R/clusterPropHeatmap.R |only PAC-1.0.5/PAC/R/filteredResults_JSON.R |only PAC-1.0.5/PAC/R/makeList.R |only PAC-1.0.5/PAC/R/packedCircleInput.R |only PAC-1.0.5/PAC/R/signalLevelHeatmap.R |only PAC-1.0.5/PAC/man/clusterNames.Rd |only PAC-1.0.5/PAC/man/clusterPropHeatmap.Rd |only PAC-1.0.5/PAC/man/filteredResults_JSON.Rd |only PAC-1.0.5/PAC/man/makeList.Rd |only PAC-1.0.5/PAC/man/packedCircleInput.Rd |only PAC-1.0.5/PAC/man/signalLevelHeatmap.Rd |only PAC-1.0.5/PAC/vignettes/CyTOFData.txt |only PAC-1.0.5/PAC/vignettes/subpop_names_top2.txt |only PAC-1.0.5/PAC/vignettes/zoomablePackedCirclesInput.txt |only PAC-1.0.6/PAC/DESCRIPTION | 23 PAC-1.0.6/PAC/MD5 | 70 +- PAC-1.0.6/PAC/NAMESPACE | 25 PAC-1.0.6/PAC/R/JaccardSM.R |only PAC-1.0.6/PAC/R/MAN.R |only PAC-1.0.6/PAC/R/MINetworkPlot_topEdges.R |only PAC-1.0.6/PAC/R/MINetwork_matrix_topEdges.R |only PAC-1.0.6/PAC/R/MINetwork_simpliefied_topEdges.R |only PAC-1.0.6/PAC/R/PAC.R | 4 PAC-1.0.6/PAC/R/RcppExports.R | 2 PAC-1.0.6/PAC/R/annotateClades.R |only PAC-1.0.6/PAC/R/annotationMatrix_withSubpopProp.R |only PAC-1.0.6/PAC/R/getRepresentativeNetworks.R |only PAC-1.0.6/PAC/R/heatmapInput.R |only PAC-1.0.6/PAC/R/outputNetworks_topEdges_matrix.R |only PAC-1.0.6/PAC/R/outputRepresentativeNetworks_topEdges.R |only PAC-1.0.6/PAC/R/refineSubpopulationLabels.R |only PAC-1.0.6/PAC/R/samplePass.R |only PAC-1.0.6/PAC/build/vignette.rds |binary PAC-1.0.6/PAC/inst/doc/intro.html | 14 PAC-1.0.6/PAC/inst/doc/intro.md |only PAC-1.0.6/PAC/man/BSPLeaveCenter.Rd | 6 PAC-1.0.6/PAC/man/JaccardSM.Rd |only PAC-1.0.6/PAC/man/MAN.Rd |only PAC-1.0.6/PAC/man/MINetworkPlot_topEdges.Rd |only PAC-1.0.6/PAC/man/MINetwork_matrix_topEdges.Rd |only PAC-1.0.6/PAC/man/MINetwork_simplified_topEdges.Rd |only PAC-1.0.6/PAC/man/PAC.Rd | 12 PAC-1.0.6/PAC/man/annotateClades.Rd |only PAC-1.0.6/PAC/man/annotationMatrix_withSubpopProp.Rd |only PAC-1.0.6/PAC/man/fmeasure.Rd | 6 PAC-1.0.6/PAC/man/getRepresentativeNetworks.Rd |only PAC-1.0.6/PAC/man/heatmapInput.Rd |only PAC-1.0.6/PAC/man/outputNetworks_topEdges_matrix.Rd |only PAC-1.0.6/PAC/man/outputRepresentativeNetworks_topEdges.Rd |only PAC-1.0.6/PAC/man/refineSubpopulationLabels.Rd |only PAC-1.0.6/PAC/man/samplePass.Rd |only PAC-1.0.6/PAC/src/RcppExports.cpp | 10 PAC-1.0.6/PAC/vignettes/BCR.Rdata |only PAC-1.0.6/PAC/vignettes/Basal.Rdata |only PAC-1.0.6/PAC/vignettes/IL7.Rdata |only PAC-1.0.6/PAC/vignettes/bioexample.Rmd | 70 +- PAC-1.0.6/PAC/vignettes/bioexample.html | 440 +++++++++---- PAC-1.0.6/PAC/vignettes/bioexample.md |only 59 files changed, 440 insertions(+), 242 deletions(-)
Title: Tools for Working with Categorical Variables (Factors)
Description: Helpers for reordering factor levels (including moving
specified levels to front, ordering by first appearance, reversing, and
randomly shuffling), and tools for modifying factor levels (including
collapsing rare levels into other, 'anonymising', and manually 'recoding').
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between forcats versions 0.1.1 dated 2016-09-15 and 0.2.0 dated 2017-01-23
DESCRIPTION | 17 ++-- MD5 | 96 +++++++++++++++------------ NAMESPACE | 5 + NEWS.md | 26 +++++++ R/as_factor.R |only R/c.R | 22 +++++- R/collapse.R | 7 + R/count.R | 4 - R/drop.R | 23 +++++- R/forcats-package.R |only R/lump.R | 33 ++++----- R/lvls.R | 27 +++++-- R/other.R |only R/recode.R | 24 +++++- R/relabel.R |only R/relevel.R | 34 +++++++-- R/reorder.R | 32 +++++---- R/rev.R | 2 R/shift.R | 2 R/shuffle.R | 2 README.md | 130 +++++++++++++++++-------------------- data/gss_cat.rda |binary man/as_factor.Rd |only man/fct_anon.Rd | 1 man/fct_c.Rd | 19 +++-- man/fct_collapse.Rd | 10 +- man/fct_count.Rd | 1 man/fct_drop.Rd | 15 +++- man/fct_expand.Rd | 1 man/fct_explicit_na.Rd | 1 man/fct_inorder.Rd | 16 ++-- man/fct_lump.Rd | 32 ++++----- man/fct_other.Rd |only man/fct_recode.Rd | 5 - man/fct_relabel.Rd |only man/fct_relevel.Rd | 34 +++++++-- man/fct_reorder.Rd | 8 +- man/fct_rev.Rd | 3 man/fct_shift.Rd | 3 man/fct_shuffle.Rd | 5 - man/fct_unify.Rd | 1 man/fct_unique.Rd | 1 man/forcats-package.Rd |only man/gss_cat.Rd | 19 ++--- man/lvls.Rd | 8 +- man/lvls_union.Rd | 1 man/pipe.Rd | 1 tests/testthat/test-as_factor.R |only tests/testthat/test-fct_c.R |only tests/testthat/test-fct_drop.R |only tests/testthat/test-fct_other.R |only tests/testthat/test-fct_recode.R | 11 +++ tests/testthat/test-fct_relabel.R |only tests/testthat/test-fct_relevel.R | 9 ++ tests/testthat/test-lvls.R | 17 ---- tests/testthat/test-lvls_reorder.R |only 56 files changed, 428 insertions(+), 280 deletions(-)
Title: Test Analysis Modules
Description:
Includes marginal maximum likelihood estimation of uni- and
multidimensional item response models (Rasch, 2PL, 3PL,
Generalized Partial Credit, Multi Facets,
Nominal Item Response, Structured Latent Class Analysis,
Mixture Distribution IRT Models, Located Latent Class Models)
and joint maximum likelihood estimation for models
from the Rasch family.
Latent regression models and plausible value imputation are
also supported.
Author:
Thomas Kiefer [aut], Alexander Robitzsch [aut, cre], Margaret Wu [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between TAM versions 1.995-0 dated 2016-05-31 and 1.99992-0 dated 2017-01-23
TAM-1.995-0/TAM/man/TAM-internal.Rd |only TAM-1.99992-0/TAM/DESCRIPTION | 13 - TAM-1.99992-0/TAM/MD5 | 106 ++++++++-------- TAM-1.99992-0/TAM/R/IRT.simulate.R | 4 TAM-1.99992-0/TAM/R/designMatrices.mfr_aux.R | 9 - TAM-1.99992-0/TAM/R/tam.fit.R | 38 +++-- TAM-1.99992-0/TAM/R/tam.jml.R | 4 TAM-1.99992-0/TAM/R/tam.jml.wle.R | 4 TAM-1.99992-0/TAM/R/tam.jml.xsi2.R | 47 +++++-- TAM-1.99992-0/TAM/R/tam.jml2.R | 8 - TAM-1.99992-0/TAM/R/tam.mml.3pl.R | 30 ++-- TAM-1.99992-0/TAM/R/tam.mml.3pl.est.guessing.R | 73 +++++++---- TAM-1.99992-0/TAM/R/tam.mml.3pl.est.intercepts.R | 111 ++++++++--------- TAM-1.99992-0/TAM/R/tam.mml.mfr.R | 13 + TAM-1.99992-0/TAM/R/tam_mml_3pl_calc_exp.R |only TAM-1.99992-0/TAM/R/tam_mml_3pl_calc_ll.R |only TAM-1.99992-0/TAM/R/tam_mml_3pl_calc_ll_est_guessing.R |only TAM-1.99992-0/TAM/R/tam_mml_3pl_calc_prob.R |only TAM-1.99992-0/TAM/R/tam_mml_3pl_calc_total_ll.R |only TAM-1.99992-0/TAM/R/tam_mml_3pl_difference_quotient.R |only TAM-1.99992-0/TAM/R/tam_mml_3pl_mstep_regression.R |only TAM-1.99992-0/TAM/R/tam_mml_3pl_vec_add_increment.R |only TAM-1.99992-0/TAM/R/tam_mml_compute_AXsi.R |only TAM-1.99992-0/TAM/R/tam_mml_mstep_xsi.R |only TAM-1.99992-0/TAM/data/data.cqc01.rda |binary TAM-1.99992-0/TAM/data/data.cqc02.rda |binary TAM-1.99992-0/TAM/data/data.cqc03.rda |binary TAM-1.99992-0/TAM/data/data.cqc04.rda |binary TAM-1.99992-0/TAM/data/data.cqc05.rda |binary TAM-1.99992-0/TAM/data/data.ctest1.rda |binary TAM-1.99992-0/TAM/data/data.ctest2.rda |binary TAM-1.99992-0/TAM/data/data.ex08.rda |binary TAM-1.99992-0/TAM/data/data.ex10.rda |binary TAM-1.99992-0/TAM/data/data.ex11.rda |binary TAM-1.99992-0/TAM/data/data.ex12.rda |binary TAM-1.99992-0/TAM/data/data.ex14.rda |binary TAM-1.99992-0/TAM/data/data.ex15.rda |binary TAM-1.99992-0/TAM/data/data.exJ03.rda |binary TAM-1.99992-0/TAM/data/data.fims.Aus.Jpn.raw.rda |binary TAM-1.99992-0/TAM/data/data.fims.Aus.Jpn.scored.rda |binary TAM-1.99992-0/TAM/data/data.geiser.rda |binary TAM-1.99992-0/TAM/data/data.gpcm.rda |binary TAM-1.99992-0/TAM/data/data.janssen.rda |binary TAM-1.99992-0/TAM/data/data.janssen2.rda |binary TAM-1.99992-0/TAM/data/data.mc.rda |binary TAM-1.99992-0/TAM/data/data.numeracy.rda |binary TAM-1.99992-0/TAM/data/data.sim.facets.rda |binary TAM-1.99992-0/TAM/data/data.sim.mfr.rda |binary TAM-1.99992-0/TAM/data/data.sim.rasch.missing.rda |binary TAM-1.99992-0/TAM/data/data.sim.rasch.pweights.rda |binary TAM-1.99992-0/TAM/data/data.sim.rasch.rda |binary TAM-1.99992-0/TAM/data/data.timssAusTwn.rda |binary TAM-1.99992-0/TAM/data/data.timssAusTwn.scored.rda |binary TAM-1.99992-0/TAM/inst/CITATION |only TAM-1.99992-0/TAM/inst/NEWS | 39 +++++ TAM-1.99992-0/TAM/man/TAM-package.Rd | 2 TAM-1.99992-0/TAM/man/data.cqc.Rd | 5 TAM-1.99992-0/TAM/man/tam.fit.Rd | 2 TAM-1.99992-0/TAM/man/tam.mml.3pl.Rd | 7 - TAM-1.99992-0/TAM/man/tam.mml.Rd | 2 60 files changed, 322 insertions(+), 195 deletions(-)
Title: Simulation of Synthetic Populations for Survey Data Considering
Auxiliary Information
Description: Tools and methods to simulate populations for surveys based
on auxiliary data. The tools include model-based methods, calibration and
combinatorial optimization algorithms. The package was developed with support of
the International Household Survey Network, DFID Trust Fund TF011722 and funds from the World bank.
Author: Bernhard Meindl, Matthias Templ, Andreas Alfons, Alexander Kowarik, and
with contributions from Mathieu Ribatet
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between simPop versions 0.3.0 dated 2016-02-20 and 0.6.0 dated 2017-01-23
simPop-0.3.0/simPop/tests/cpp_sa.r |only simPop-0.3.0/simPop/tests/mosaicplots.r |only simPop-0.3.0/simPop/tests/test_simCategorical.r |only simPop-0.6.0/simPop/DESCRIPTION | 33 ++--- simPop-0.6.0/simPop/MD5 | 135 ++++++++++---------- simPop-0.6.0/simPop/NAMESPACE | 9 + simPop-0.6.0/simPop/NEWS | 11 + simPop-0.6.0/simPop/R/0classes.R | 4 simPop-0.6.0/simPop/R/calibPop.R | 22 ++- simPop-0.6.0/simPop/R/correctHeap.R |only simPop-0.6.0/simPop/R/ipu.r | 155 ------------------------ simPop-0.6.0/simPop/R/ipu2.r |only simPop-0.6.0/simPop/R/simCategorical.R | 54 +++++--- simPop-0.6.0/simPop/R/simContinuous.R | 101 ++++++++++----- simPop-0.6.0/simPop/R/utils.R | 13 +- simPop-0.6.0/simPop/R/whipple.R | 65 ++++++---- simPop-0.6.0/simPop/data/datalist | 12 - simPop-0.6.0/simPop/data/eusilc13puf.rda |binary simPop-0.6.0/simPop/data/eusilcP.RData |binary simPop-0.6.0/simPop/data/eusilcS.RData |binary simPop-0.6.0/simPop/data/ghanaS.RData |binary simPop-0.6.0/simPop/data/totalsRG.rda |binary simPop-0.6.0/simPop/data/totalsRGtab.rda |binary simPop-0.6.0/simPop/demo/eusilc.R | 2 simPop-0.6.0/simPop/demo/ghana.R | 2 simPop-0.6.0/simPop/inst/CITATION | 2 simPop-0.6.0/simPop/man/addKnownMargins.Rd | 2 simPop-0.6.0/simPop/man/addWeights.Rd | 2 simPop-0.6.0/simPop/man/calibPop.Rd | 2 simPop-0.6.0/simPop/man/calibSample.Rd | 2 simPop-0.6.0/simPop/man/calibVars.Rd | 2 simPop-0.6.0/simPop/man/contingencyWt.Rd | 3 simPop-0.6.0/simPop/man/correctHeaps.Rd |only simPop-0.6.0/simPop/man/correctSingleHeap.Rd |only simPop-0.6.0/simPop/man/dataObj-class.Rd | 3 simPop-0.6.0/simPop/man/eusilc13puf.Rd | 2 simPop-0.6.0/simPop/man/eusilcP.Rd | 4 simPop-0.6.0/simPop/man/eusilcS.Rd | 4 simPop-0.6.0/simPop/man/getBreaks.Rd | 6 simPop-0.6.0/simPop/man/getCat.Rd | 6 simPop-0.6.0/simPop/man/get_set-methods.Rd | 4 simPop-0.6.0/simPop/man/ghanaS.Rd | 4 simPop-0.6.0/simPop/man/ipu.Rd | 6 simPop-0.6.0/simPop/man/ipu2.Rd |only simPop-0.6.0/simPop/man/kishFactor.Rd |only simPop-0.6.0/simPop/man/manageSimPopObj.Rd | 2 simPop-0.6.0/simPop/man/quantileWt.Rd | 4 simPop-0.6.0/simPop/man/sampHH.Rd | 2 simPop-0.6.0/simPop/man/silcTools.Rd | 2 simPop-0.6.0/simPop/man/silcTools2.Rd | 2 simPop-0.6.0/simPop/man/simCategorical.Rd | 11 - simPop-0.6.0/simPop/man/simComponents.Rd | 2 simPop-0.6.0/simPop/man/simContinuous.Rd | 10 - simPop-0.6.0/simPop/man/simEUSILC.Rd | 8 - simPop-0.6.0/simPop/man/simInitSpatial.Rd | 3 simPop-0.6.0/simPop/man/simPopObj-class.Rd | 4 simPop-0.6.0/simPop/man/simRelation.Rd | 8 - simPop-0.6.0/simPop/man/simStructure.Rd | 4 simPop-0.6.0/simPop/man/simple_dis.Rd | 2 simPop-0.6.0/simPop/man/spBwplot.Rd | 4 simPop-0.6.0/simPop/man/spBwplotStats.Rd | 6 simPop-0.6.0/simPop/man/spCdf.Rd | 4 simPop-0.6.0/simPop/man/spCdfplot.Rd | 2 simPop-0.6.0/simPop/man/spMosaic.Rd | 3 simPop-0.6.0/simPop/man/spTable.Rd | 3 simPop-0.6.0/simPop/man/specifyInput.Rd | 2 simPop-0.6.0/simPop/man/sprague.Rd | 6 simPop-0.6.0/simPop/man/tableWt.Rd | 6 simPop-0.6.0/simPop/man/totalsRG.Rd | 6 simPop-0.6.0/simPop/man/utility.Rd | 6 simPop-0.6.0/simPop/man/weighted_estimators.Rd | 2 simPop-0.6.0/simPop/man/whipple.Rd | 24 +++ simPop-0.6.0/simPop/tests/dontruns.R | 6 73 files changed, 371 insertions(+), 445 deletions(-)
Title: R/Weka Interface
Description: An R interface to Weka (Version 3.9.1).
Weka is a collection of machine learning algorithms for data mining
tasks written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Package 'RWeka' contains the interface code, the
Weka jar is in a separate package 'RWekajars'. For more information
on Weka see <http://www.cs.waikato.ac.nz/ml/weka/>.
Author: Kurt Hornik [aut, cre],
Christian Buchta [ctb],
Torsten Hothorn [ctb],
Alexandros Karatzoglou [ctb],
David Meyer [ctb],
Achim Zeileis [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between RWeka versions 0.4-30 dated 2017-01-14 and 0.4-31 dated 2017-01-23
CHANGELOG | 5 +++++ DESCRIPTION | 6 +++--- MD5 | 34 +++++++++++++++++----------------- R/associators.R | 2 +- R/attributes.R | 2 +- R/classifiers.R | 2 +- R/clusterers.R | 2 +- R/control.R | 2 +- R/converters.R | 6 +++--- R/filters.R | 2 +- R/graph.R | 4 ++-- R/interfaces.R | 2 +- R/onLoad.R | 5 +++++ R/stemmers.R | 2 +- R/tokenizers.R | 2 +- R/wow.R | 2 +- R/wpm.R | 22 ++++++++++++++++++++++ inst/doc/RWeka.pdf |binary 18 files changed, 67 insertions(+), 35 deletions(-)
Title: Meta-Analysis using Structural Equation Modeling
Description: A collection of functions for conducting meta-analysis using a
structural equation modeling (SEM) approach via the 'OpenMx' package.
It also implements the two-stage SEM approach to conduct meta-analytic
structural equation modeling on correlation and covariance matrices.
Author: Mike W.-L. Cheung <mikewlcheung@nus.edu.sg>
Maintainer: Mike W.-L. Cheung <mikewlcheung@nus.edu.sg>
Diff between metaSEM versions 0.9.10 dated 2016-08-18 and 0.9.12 dated 2017-01-23
metaSEM-0.9.10/metaSEM/R/impliedSigma.R |only metaSEM-0.9.10/metaSEM/man/impliedSigma.Rd |only metaSEM-0.9.12/metaSEM/DESCRIPTION | 8 metaSEM-0.9.12/metaSEM/MD5 | 110 +++-- metaSEM-0.9.12/metaSEM/NAMESPACE | 4 metaSEM-0.9.12/metaSEM/NEWS | 17 metaSEM-0.9.12/metaSEM/R/as.mxMatrix.R | 71 +-- metaSEM-0.9.12/metaSEM/R/hidden.R | 21 + metaSEM-0.9.12/metaSEM/R/homoStat.R | 2 metaSEM-0.9.12/metaSEM/R/impliedR.R |only metaSEM-0.9.12/metaSEM/R/indirectEffect.R | 4 metaSEM-0.9.12/metaSEM/R/meta.R | 8 metaSEM-0.9.12/metaSEM/R/meta3.R | 3 metaSEM-0.9.12/metaSEM/R/meta3X.R | 1 metaSEM-0.9.12/metaSEM/R/reml.R | 1 metaSEM-0.9.12/metaSEM/R/reml3.R | 1 metaSEM-0.9.12/metaSEM/R/summary.R | 71 --- metaSEM-0.9.12/metaSEM/R/tssem.R | 67 --- metaSEM-0.9.12/metaSEM/R/uniR.R |only metaSEM-0.9.12/metaSEM/R/zzz.R | 26 - metaSEM-0.9.12/metaSEM/README.md | 4 metaSEM-0.9.12/metaSEM/build/vignette.rds |binary metaSEM-0.9.12/metaSEM/data/Aloe14.rda |binary metaSEM-0.9.12/metaSEM/data/BCG.rda |binary metaSEM-0.9.12/metaSEM/data/Becker09.rda |binary metaSEM-0.9.12/metaSEM/data/Becker83.rda |binary metaSEM-0.9.12/metaSEM/data/Becker92.rda |binary metaSEM-0.9.12/metaSEM/data/Becker94.rda |binary metaSEM-0.9.12/metaSEM/data/Berkey98.rda |binary metaSEM-0.9.12/metaSEM/data/Boer16.rda |only metaSEM-0.9.12/metaSEM/data/Bornmann07.rda |binary metaSEM-0.9.12/metaSEM/data/Cheung00.rda |binary metaSEM-0.9.12/metaSEM/data/Cheung09.rda |binary metaSEM-0.9.12/metaSEM/data/Cooke16.rda |only metaSEM-0.9.12/metaSEM/data/Cooper03.rda |binary metaSEM-0.9.12/metaSEM/data/Digman97.rda |binary metaSEM-0.9.12/metaSEM/data/HedgesOlkin85.rda |binary metaSEM-0.9.12/metaSEM/data/Hox02.rda |binary metaSEM-0.9.12/metaSEM/data/Hunter83.rda |binary metaSEM-0.9.12/metaSEM/data/Jaramillo05.rda |binary metaSEM-0.9.12/metaSEM/data/Mak09.rda |binary metaSEM-0.9.12/metaSEM/data/Nohe15A1.rda |only metaSEM-0.9.12/metaSEM/data/Nohe15A2.rda |only metaSEM-0.9.12/metaSEM/data/Norton13.rda |binary metaSEM-0.9.12/metaSEM/data/Roorda11.rda |binary metaSEM-0.9.12/metaSEM/data/issp05.rda |binary metaSEM-0.9.12/metaSEM/data/issp89.rda |binary metaSEM-0.9.12/metaSEM/data/wvs94a.rda |binary metaSEM-0.9.12/metaSEM/data/wvs94b.rda |binary metaSEM-0.9.12/metaSEM/inst/doc/Examples.html | 490 +++++++++++++------------- metaSEM-0.9.12/metaSEM/inst/doc/metaSEM.pdf |binary metaSEM-0.9.12/metaSEM/man/Becker09.Rd | 67 ++- metaSEM-0.9.12/metaSEM/man/Boer16.Rd |only metaSEM-0.9.12/metaSEM/man/Cooke16.Rd |only metaSEM-0.9.12/metaSEM/man/Hox02.Rd | 4 metaSEM-0.9.12/metaSEM/man/Hunter83.Rd | 27 - metaSEM-0.9.12/metaSEM/man/Nohe15.Rd |only metaSEM-0.9.12/metaSEM/man/asyCov.Rd | 2 metaSEM-0.9.12/metaSEM/man/impliedR.Rd |only metaSEM-0.9.12/metaSEM/man/metaSEM-package.Rd | 7 metaSEM-0.9.12/metaSEM/man/print.Rd | 12 metaSEM-0.9.12/metaSEM/man/uniR1.Rd |only metaSEM-0.9.12/metaSEM/man/uniR2.Rd |only 63 files changed, 538 insertions(+), 490 deletions(-)
Title: Multi-Analysis Distance Sampling
Description: Performs distance sampling analyses on a number of species
accounting for unidentified sightings, model uncertainty and covariate
uncertainty.
Author: Laura Marshall
Maintainer: Laura Marshall <lhm@st-and.ac.uk>
Diff between mads versions 0.1.4 dated 2016-08-10 and 0.1.5 dated 2017-01-23
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- NEWS | 7 +++++++ R/check.ddf.models.R | 3 +-- R/fit.ddf.models.R | 4 ++-- tests/testthat/test_doubleObserver.R |only tests/testthat/test_mrdsOptions.R |only 7 files changed, 20 insertions(+), 12 deletions(-)
Title: Statistical Methods for Phenology Analysis in Temperate Fruit
Trees
Description: The phenology of plants (i.e. the timing of their annual life
phases) depends on climatic cues. For temperate trees and many other plants,
spring phases, such as leaf emergence and flowering, have been found to result
from the effects of both cool (chilling) conditions and heat. Fruit tree
scientists (pomologists) have developed some metrics to quantify chilling
and heat. 'chillR' contains functions for processing temperature records into
chilling (Chilling Hours, Utah Chill Units and Chill Portions) and heat units
(Growing Degree Hours). Regarding chilling metrics, Chill Portions are often
considered the most promising, but they are difficult to calculate. This package
makes it easy. 'chillR' also contains procedures for conducting a PLS analysis
relating phenological dates (e.g. bloom dates) to either mean temperatures or
mean chill and heat accumulation rates, based on long-term weather and phenology
records. As of version 0.65, it also includes functions for generating weather
scenarios with a weather generator, for conducting climate change analyses
for temperature-based climatic metrics and for plotting results from such
analyses.
Author: Eike Luedeling
Maintainer: Eike Luedeling <eike@eikeluedeling.com>
Diff between chillR versions 0.62 dated 2016-03-12 and 0.65 dated 2017-01-23
DESCRIPTION | 16 +- MD5 | 57 +++++-- NAMESPACE | 22 +++ R/bloom_prediction.R | 33 +++- R/check_temperature_scenario.R |only R/chile_agromet2chillR.R | 2 R/chilling.R | 2 R/extract_differences_between_characters.R |only R/extract_temperatures_from_grids.R |only R/get_weather.R | 1 R/identify_common_string.R |only R/make_JDay.R |only R/make_all_day_table.R | 2 R/make_climate_scenario_from_files.R |only R/make_daily_chill_plot.R | 8 - R/make_multi_pheno_trend_plot.R | 61 ++++++-- R/ordered_climate_list.R |only R/plot_climate_scenarios.R |only R/read_tab.R |only R/select_by_file_extension.R |only R/tempResponse.R | 6 R/temp_models.R | 175 +++++++++++++++--------- R/temperature_generation.R |only R/temperature_scenario_baseline_adjustment.R |only R/temperature_scenario_from_records.R |only R/test_if_equal.R |only man/GDD.Rd |only man/bloom_prediction.Rd | 18 +- man/check_temperature_scenario.Rd |only man/extract_differences_between_characters.Rd |only man/extract_temperatures_from_grids.Rd |only man/identify_common_string.Rd |only man/make_JDay.Rd |only man/make_climate_scenario_from_files.Rd |only man/make_daily_chill_plot.Rd | 4 man/make_multi_pheno_trend_plot.Rd | 13 + man/ordered_climate_list.Rd |only man/plot_climate_scenarios.Rd |only man/read_tab.Rd |only man/select_by_file_extension.Rd |only man/temperature_generation.Rd |only man/temperature_scenario_baseline_adjustment.Rd |only man/temperature_scenario_from_records.Rd |only man/test_if_equal.Rd |only 44 files changed, 296 insertions(+), 124 deletions(-)
Title: A Multiple Comparison Perspective
Description: Accompanies "Designing experiments and analyzing data: A model comparison perspective" (3rd ed.) by Maxwell, Delaney, & Kelley (forthcoming from Routledge). This package contains all of the data sets in the book. Information about the book is available at <http://www.DesigningExperiments.com>.
Author: Scott Maxwell [aut],
Harold Delaney [aut],
Ken Kelley [aut, cre]
Maintainer: Ken Kelley <kkelley@nd.edu>
Diff between AMCP versions 0.0.2 dated 2016-03-02 and 0.0.3 dated 2017-01-23
AMCP-0.0.2/AMCP/data/chapter_2_table_1.rda |only AMCP-0.0.2/AMCP/man/chapter_2_table_1.Rd |only AMCP-0.0.3/AMCP/DESCRIPTION | 10 +++--- AMCP-0.0.3/AMCP/MD5 | 10 +++--- AMCP-0.0.3/AMCP/build/partial.rdb |binary AMCP-0.0.3/AMCP/data/chapter_1_table_1.rda |only AMCP-0.0.3/AMCP/man/AMCP-package.Rd | 46 ++++++++++++++--------------- AMCP-0.0.3/AMCP/man/chapter_1_table_1.Rd |only 8 files changed, 33 insertions(+), 33 deletions(-)
Title: Multivariate Multinomial Distribution Approximation and
Imputation for Incomplete Data
Description: Fit incomplete categorical data with infinite mixture of multinomial distribution
(Dunson and Xing (2009) <DOI:10.1198/jasa.2009.tm08439>). Perform efficient missing data imputation and
other statistical inference based on joint distribution estimation.
Author: Chaojie Wang
Maintainer: Chaojie Wang <wang910930@163.com>
Diff between MMDai versions 0.1.0 dated 2016-09-14 and 1.0.0 dated 2017-01-23
MMDai-0.1.0/MMDai/R/CompleteData.R |only MMDai-0.1.0/MMDai/R/FinMix.R |only MMDai-0.1.0/MMDai/R/IncompleteData.R |only MMDai-0.1.0/MMDai/R/JointDistribution.R |only MMDai-0.1.0/MMDai/R/MatrixToArray.R |only MMDai-0.1.0/MMDai/R/generateData.R |only MMDai-0.1.0/MMDai/R/k_identifier.R |only MMDai-0.1.0/MMDai/data/CompleteData.rda |only MMDai-0.1.0/MMDai/data/IncompleteData.rda |only MMDai-0.1.0/MMDai/man/CompleteData.Rd |only MMDai-0.1.0/MMDai/man/FinMix.Rd |only MMDai-0.1.0/MMDai/man/IncompleteData.Rd |only MMDai-0.1.0/MMDai/man/JointDistribution.Rd |only MMDai-0.1.0/MMDai/man/MatrixToArray.Rd |only MMDai-0.1.0/MMDai/man/generateData.Rd |only MMDai-0.1.0/MMDai/man/k_identifier.Rd |only MMDai-1.0.0/MMDai/DESCRIPTION | 11 +--- MMDai-1.0.0/MMDai/MD5 | 49 +++++++++++------- MMDai-1.0.0/MMDai/NAMESPACE | 16 ++++-- MMDai-1.0.0/MMDai/R/ChiSquareTest.R |only MMDai-1.0.0/MMDai/R/Correlation.R |only MMDai-1.0.0/MMDai/R/Example.R |only MMDai-1.0.0/MMDai/R/FactorToMatrix.R |only MMDai-1.0.0/MMDai/R/GenerateData.R |only MMDai-1.0.0/MMDai/R/Imputation.R | 75 ++++++++++++++--------------- MMDai-1.0.0/MMDai/R/InitialPsi.R |only MMDai-1.0.0/MMDai/R/JointTable.R |only MMDai-1.0.0/MMDai/R/JointTableEst.R |only MMDai-1.0.0/MMDai/R/MatrixToFactor.R |only MMDai-1.0.0/MMDai/R/MutualInfo.R |only MMDai-1.0.0/MMDai/R/ParEst.R |only MMDai-1.0.0/MMDai/R/kIdentifier.R |only MMDai-1.0.0/MMDai/data/Example.rda |only MMDai-1.0.0/MMDai/man/ChiSquareTest.Rd |only MMDai-1.0.0/MMDai/man/Correlation.Rd |only MMDai-1.0.0/MMDai/man/Example.Rd |only MMDai-1.0.0/MMDai/man/FactorToMatrix.Rd |only MMDai-1.0.0/MMDai/man/GenerateData.Rd |only MMDai-1.0.0/MMDai/man/Imputation.Rd | 31 ++--------- MMDai-1.0.0/MMDai/man/InitialPsi.Rd |only MMDai-1.0.0/MMDai/man/JointTable.Rd |only MMDai-1.0.0/MMDai/man/JointTableEst.Rd |only MMDai-1.0.0/MMDai/man/MatrixToFactor.Rd |only MMDai-1.0.0/MMDai/man/MutualInfo.Rd |only MMDai-1.0.0/MMDai/man/ParEst.Rd |only MMDai-1.0.0/MMDai/man/kIdentifier.Rd |only 46 files changed, 90 insertions(+), 92 deletions(-)
Title: Easy Handling Discrete Time Markov Chains
Description: Functions and S4 methods to create and manage discrete time Markov
chains (DTMC) more easily. In addition functions to perform statistical (fitting
and drawing random variates) and probabilistic (analysis of DTMC proprieties)
analysis are provided.
Author: Giorgio Alfredo Spedicato [aut,cre], Tae Seung Kang [aut], Sai Bhargav
Yalamanchi [aut], Mildenberger Thoralf [ctb], Deepak Yadav [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between markovchain versions 0.6.5.1 dated 2016-09-08 and 0.6.6 dated 2017-01-23
ChangeLog | 5 DESCRIPTION | 8 MD5 | 42 +- NEWS | 5 R/1_functions4Fitting.R | 43 ++ R/5_statisticalTests.R | 72 ++-- R/RcppExports.R | 10 build/vignette.rds |binary inst/doc/an_introduction_to_markovchain_package.R | 139 ++++--- inst/doc/an_introduction_to_markovchain_package.Rnw | 33 + inst/doc/an_introduction_to_markovchain_package.pdf |binary inst/doc/complicateSteadyStates.pdf |binary inst/doc/markovchainCrashIntro.pdf |binary man/markovchain-package.Rd | 4 man/markovchainFit.Rd | 2 man/markovchainListFit.Rd | 2 src/1_ctmcFunctions4Fitting.cpp | 5 src/1_functions4Fitting.cpp | 336 +++++++++++++++---- src/RcppExports.cpp | 24 + tests/testthat/testBasic1.R | 10 vignettes/an_introduction_to_markovchain_package.Rnw | 33 + vignettes/markovchainBiblio.bib | 7 22 files changed, 584 insertions(+), 196 deletions(-)
Title: Ensemble Forecast Verification for Large Data Sets
Description: Set of tools to simplify application of atomic forecast
verification metrics for (comparative) verification of ensemble forecasts
to large data sets. The forecast metrics are imported from the
'SpecsVerification' package, and additional forecast metrics are provided
with this package. Alternatively, new user-defined forecast scores can be
implemented using the example scores provided and applied using the
functionality of this package.
Author: MeteoSwiss [aut, cph],
Jonas Bhend [cre],
Jacopo Ripoldi [ctb],
Claudia Mignani [ctb],
Irina Mahlstein [ctb],
Rebecca Hiller [ctb],
Christoph Spirig [ctb],
Mark Liniger [ctb],
Andreas Weigel [ctb],
Joaqu'in Bedia Jimenez [ctb],
Matteo De Felice [ctb]
Maintainer: Jonas Bhend <jonas.bhend@meteoswiss.ch>
Diff between easyVerification versions 0.3.0 dated 2016-09-28 and 0.4.0 dated 2017-01-23
easyVerification-0.3.0/easyVerification/R/EnsRocss.R |only easyVerification-0.3.0/easyVerification/man/EnsRocss.Rd |only easyVerification-0.4.0/easyVerification/DESCRIPTION | 12 easyVerification-0.4.0/easyVerification/MD5 | 45 +- easyVerification-0.4.0/easyVerification/NAMESPACE | 1 easyVerification-0.4.0/easyVerification/NEWS |only easyVerification-0.4.0/easyVerification/R/EnsRoca.R | 73 ++++ easyVerification-0.4.0/easyVerification/R/changearg.R |only easyVerification-0.4.0/easyVerification/R/climFairRpss.R | 48 +- easyVerification-0.4.0/easyVerification/R/convert2prob.R | 164 +++++++--- easyVerification-0.4.0/easyVerification/R/count2prob.R | 5 easyVerification-0.4.0/easyVerification/R/easyVerification.R | 11 easyVerification-0.4.0/easyVerification/R/size.R |only easyVerification-0.4.0/easyVerification/R/veriApply.R | 10 easyVerification-0.4.0/easyVerification/R/veriUnwrap.R | 25 - easyVerification-0.4.0/easyVerification/build/vignette.rds |binary easyVerification-0.4.0/easyVerification/man/EnsRoca.Rd | 35 ++ easyVerification-0.4.0/easyVerification/man/changearg.Rd |only easyVerification-0.4.0/easyVerification/man/climFairRpss.Rd | 13 easyVerification-0.4.0/easyVerification/man/convert2prob.Rd | 67 ++-- easyVerification-0.4.0/easyVerification/man/easyVerification.Rd | 10 easyVerification-0.4.0/easyVerification/man/size.Rd |only easyVerification-0.4.0/easyVerification/man/veriApply.Rd | 10 easyVerification-0.4.0/easyVerification/man/veriUnwrap.Rd | 11 easyVerification-0.4.0/easyVerification/tests/testthat/test_Roc.R | 18 - easyVerification-0.4.0/easyVerification/tests/testthat/test_convert2prob.R | 12 easyVerification-0.4.0/easyVerification/tests/testthat/test_veriApply.R | 4 27 files changed, 404 insertions(+), 170 deletions(-)
More information about easyVerification at CRAN
Permanent link
Title: 'Rcpp' Interface to 'sparsepp'
Description: Provides interface to 'sparsepp' - fast, memory efficient hash map.
It is derived from Google's excellent 'sparsehash' implementation.
We believe 'sparsepp' provides an unparalleled combination of performance and memory usage,
and will outperform your compiler's unordered_map on both counts.
Only Google's 'dense_hash_map' is consistently faster, at the cost of much greater
memory usage (especially when the final size of the map is not known in advance).
Author: Gregory Popovitch [aut, cph],
Google Inc [aut, cph],
Dmitriy Selivanov [cre]
Maintainer: Dmitriy Selivanov <selivanov.dmitriy@gmail.com>
Diff between sparsepp versions 0.1.0 dated 2016-12-30 and 0.1.1 dated 2017-01-23
DESCRIPTION | 9 MD5 | 14 README.md | 3 inst/include/README.md | 53 +- inst/include/makefile | 6 inst/include/sparsepp.h | 1150 ++++++++++++++++++++++++----------------------- inst/include/spp_test.cc | 47 - inst/include/spp_utils.h | 124 +++-- 8 files changed, 759 insertions(+), 647 deletions(-)
Title: Obtain, Organize, and Visualize NCEP Weather Data
Description: Contains functions to retrieve, organize, and visualize weather data from the NCEP/NCAR Reanalysis (http://www.esrl.noaa.gov/psd/data/gridded/data.ncep.reanalysis.html) and NCEP/DOE Reanalysis II (http://www.esrl.noaa.gov/psd/data/gridded/data.ncep.reanalysis2.html) datasets. Data are queried via the Internet and may be obtained for a specified spatial and temporal extent or interpolated to a point in space and time. We also provide functions to visualize these weather data on a map. There are also functions to simulate flight trajectories according to specified behavior using either NCEP wind data or data specified by the user.
Author: Michael U. Kemp <mukemp+RNCEP@gmail.com> with contributions from E. Emiel van Loon, Judy Shamoun-Baranes, and Willem Bouten
Maintainer: Michael U. Kemp <mukemp+RNCEP@gmail.com>
Diff between RNCEP versions 1.0.7 dated 2014-11-24 and 1.0.8 dated 2017-01-23
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ NAMESPACE | 6 +++++- R/NCEP.gather.gaussian.R | 4 ++-- R/NCEP.gather.pressure.R | 6 +++--- R/NCEP.gather.surface.R | 10 +++++----- R/NCEP.interp.gaussian.R | 4 ++-- R/NCEP.interp.pressure.R | 6 +++--- R/NCEP.interp.surface.R | 10 +++++----- R/robust.NCEP.interp.gaussian.R | 10 +++++----- R/robust.NCEP.interp.pressure.R | 12 ++++++------ R/robust.NCEP.interp.surface.R | 16 ++++++++-------- man/RNCEP-package.Rd | 4 ++-- 13 files changed, 63 insertions(+), 59 deletions(-)
Title: R Client for the MTurk Requester API
Description: Provides programmatic access to the Amazon Mechanical Turk (MTurk) <https://www.mturk.com/mturk/welcome> Requester API.
Author: Thomas J. Leeper [aut, cre],
Solomon Messing [ctb],
Sean Murphy [ctb],
Jonathan Chang [ctb],
Andrew Brown [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between MTurkR versions 0.7.0 dated 2016-02-21 and 0.8.0 dated 2017-01-23
MTurkR-0.7.0/MTurkR/NEWS |only MTurkR-0.8.0/MTurkR/DESCRIPTION | 20 MTurkR-0.8.0/MTurkR/MD5 | 244 +++++------ MTurkR-0.8.0/MTurkR/NAMESPACE | 2 MTurkR-0.8.0/MTurkR/NEWS.md |only MTurkR-0.8.0/MTurkR/R/AccountBalance.R | 5 MTurkR-0.8.0/MTurkR/R/ApproveAllAssignments.R | 31 - MTurkR-0.8.0/MTurkR/R/ApproveAssignment.R | 43 +- MTurkR-0.8.0/MTurkR/R/AssignQualification.R | 131 +++--- MTurkR-0.8.0/MTurkR/R/BlockWorker.R | 31 - MTurkR-0.8.0/MTurkR/R/BulkCreate.R | 40 + MTurkR-0.8.0/MTurkR/R/ChangeHITType.R | 61 +- MTurkR-0.8.0/MTurkR/R/ContactWorker.R | 93 ++-- MTurkR-0.8.0/MTurkR/R/CreateHIT.R | 92 ++-- MTurkR-0.8.0/MTurkR/R/CreateQualificationType.R | 78 ++- MTurkR-0.8.0/MTurkR/R/DisableHIT.R | 47 +- MTurkR-0.8.0/MTurkR/R/DisposeHIT.R | 34 - MTurkR-0.8.0/MTurkR/R/DisposeQualificationType.R | 29 - MTurkR-0.8.0/MTurkR/R/ExpireHIT.R | 37 + MTurkR-0.8.0/MTurkR/R/ExtendHIT.R | 81 ++- MTurkR-0.8.0/MTurkR/R/GenerateAnswerKey.R | 65 +-- MTurkR-0.8.0/MTurkR/R/GenerateExternalQuestion.R | 2 MTurkR-0.8.0/MTurkR/R/GenerateHITLayoutParameter.R | 9 MTurkR-0.8.0/MTurkR/R/GenerateHITsFromTemplate.R | 19 MTurkR-0.8.0/MTurkR/R/GenerateNotification.R | 45 +- MTurkR-0.8.0/MTurkR/R/GenerateQualificationRequirement.R | 85 ++- MTurkR-0.8.0/MTurkR/R/GenerateReviewPolicy.R | 45 +- MTurkR-0.8.0/MTurkR/R/GetAssignment.R | 113 ++--- MTurkR-0.8.0/MTurkR/R/GetBlockedWorkers.R | 27 - MTurkR-0.8.0/MTurkR/R/GetBonuses.R | 68 +-- MTurkR-0.8.0/MTurkR/R/GetFileUpload.R | 20 MTurkR-0.8.0/MTurkR/R/GetHIT.R | 42 + MTurkR-0.8.0/MTurkR/R/GetHITsForQualificationType.R | 36 - MTurkR-0.8.0/MTurkR/R/GetQualificationRequests.R | 51 +- MTurkR-0.8.0/MTurkR/R/GetQualificationScore.R | 34 - MTurkR-0.8.0/MTurkR/R/GetQualificationType.R | 37 - MTurkR-0.8.0/MTurkR/R/GetQualifications.R | 47 +- MTurkR-0.8.0/MTurkR/R/GetReviewResultsForHIT.R | 81 +-- MTurkR-0.8.0/MTurkR/R/GetReviewableHITs.R | 58 +- MTurkR-0.8.0/MTurkR/R/GetStatistic.R | 64 +-- MTurkR-0.8.0/MTurkR/R/GetWorkerStatistic.R | 75 +-- MTurkR-0.8.0/MTurkR/R/GrantBonus.R | 79 ++- MTurkR-0.8.0/MTurkR/R/GrantQualification.R | 48 +- MTurkR-0.8.0/MTurkR/R/HITStatus.R | 22 - MTurkR-0.8.0/MTurkR/R/ListOperations.R | 5 MTurkR-0.8.0/MTurkR/R/ListQualificationTypes.R | 5 MTurkR-0.8.0/MTurkR/R/ListStatistics.R | 19 MTurkR-0.8.0/MTurkR/R/OpenDownloadPage.R | 8 MTurkR-0.8.0/MTurkR/R/OpenManageHITPage.R | 6 MTurkR-0.8.0/MTurkR/R/OpenQualificationPage.R | 4 MTurkR-0.8.0/MTurkR/R/OpenWorkerPage.R | 7 MTurkR-0.8.0/MTurkR/R/RegisterHITType.R | 63 +- MTurkR-0.8.0/MTurkR/R/RejectAssignment.R | 51 +- MTurkR-0.8.0/MTurkR/R/RejectQualification.R | 47 +- MTurkR-0.8.0/MTurkR/R/RequesterReport.R | 32 - MTurkR-0.8.0/MTurkR/R/RevokeQualification.R | 48 +- MTurkR-0.8.0/MTurkR/R/SearchHITs.R | 99 ++-- MTurkR-0.8.0/MTurkR/R/SearchQualificationTypes.R | 64 +-- MTurkR-0.8.0/MTurkR/R/SendTestEventNotification.R | 21 MTurkR-0.8.0/MTurkR/R/SetHITAsReviewing.R | 51 +- MTurkR-0.8.0/MTurkR/R/SetHITTypeNotification.R | 39 + MTurkR-0.8.0/MTurkR/R/SufficientFunds.R | 36 + MTurkR-0.8.0/MTurkR/R/UnblockWorker.R | 37 - MTurkR-0.8.0/MTurkR/R/UpdateQualificationScore.R | 53 +- MTurkR-0.8.0/MTurkR/R/UpdateQualificationType.R | 83 ++- MTurkR-0.8.0/MTurkR/R/ViewAvailableHITs.R | 18 MTurkR-0.8.0/MTurkR/R/WorkerReport.R | 23 - MTurkR-0.8.0/MTurkR/R/asdataframe.R | 320 ++++++--------- MTurkR-0.8.0/MTurkR/R/credentials.R | 5 MTurkR-0.8.0/MTurkR/R/emptydf.R |only MTurkR-0.8.0/MTurkR/R/makeGETparameters.R | 6 MTurkR-0.8.0/MTurkR/R/onLoad.r | 18 MTurkR-0.8.0/MTurkR/R/readlogfile.R | 6 MTurkR-0.8.0/MTurkR/R/request.R | 5 MTurkR-0.8.0/MTurkR/R/seconds.R | 20 MTurkR-0.8.0/MTurkR/R/setRownames.R |only MTurkR-0.8.0/MTurkR/R/wizardsimple.R | 29 - MTurkR-0.8.0/MTurkR/README.md | 23 - MTurkR-0.8.0/MTurkR/inst/doc |only MTurkR-0.8.0/MTurkR/man/ApproveAssignment.Rd | 4 MTurkR-0.8.0/MTurkR/man/AssignQualification.Rd | 2 MTurkR-0.8.0/MTurkR/man/BlockWorker.Rd | 4 MTurkR-0.8.0/MTurkR/man/ChangeHITType.Rd | 2 MTurkR-0.8.0/MTurkR/man/ContactWorker.Rd | 2 MTurkR-0.8.0/MTurkR/man/CreateHIT.Rd | 2 MTurkR-0.8.0/MTurkR/man/CreateQualificationType.Rd | 2 MTurkR-0.8.0/MTurkR/man/DisableHIT.Rd | 2 MTurkR-0.8.0/MTurkR/man/DisposeHIT.Rd | 2 MTurkR-0.8.0/MTurkR/man/DisposeQualificationType.Rd | 2 MTurkR-0.8.0/MTurkR/man/ExpireHIT.Rd | 4 MTurkR-0.8.0/MTurkR/man/ExtendHIT.Rd | 4 MTurkR-0.8.0/MTurkR/man/GenerateAnswerKey.Rd | 2 MTurkR-0.8.0/MTurkR/man/GenerateHITsFromTemplate.Rd | 2 MTurkR-0.8.0/MTurkR/man/GenerateHTMLQuestion.Rd | 2 MTurkR-0.8.0/MTurkR/man/GetAssignment.Rd | 6 MTurkR-0.8.0/MTurkR/man/GetBonuses.Rd | 2 MTurkR-0.8.0/MTurkR/man/GetFileUpload.Rd | 4 MTurkR-0.8.0/MTurkR/man/GetHIT.Rd | 10 MTurkR-0.8.0/MTurkR/man/GetQualificationRequests.Rd | 4 MTurkR-0.8.0/MTurkR/man/GetQualificationScore.Rd | 4 MTurkR-0.8.0/MTurkR/man/GetQualificationType.Rd | 2 MTurkR-0.8.0/MTurkR/man/GetQualifications.Rd | 4 MTurkR-0.8.0/MTurkR/man/GetReviewResultsForHIT.Rd | 2 MTurkR-0.8.0/MTurkR/man/GetReviewableHITs.Rd | 2 MTurkR-0.8.0/MTurkR/man/GetStatistic.Rd | 4 MTurkR-0.8.0/MTurkR/man/GrantBonus.Rd | 8 MTurkR-0.8.0/MTurkR/man/GrantQualification.Rd | 2 MTurkR-0.8.0/MTurkR/man/Miscellaneous.Rd | 2 MTurkR-0.8.0/MTurkR/man/RegisterHITType.Rd | 2 MTurkR-0.8.0/MTurkR/man/RejectAssignment.Rd | 2 MTurkR-0.8.0/MTurkR/man/RevokeQualification.Rd | 2 MTurkR-0.8.0/MTurkR/man/SearchHITs.Rd | 6 MTurkR-0.8.0/MTurkR/man/SearchQualificationTypes.Rd | 4 MTurkR-0.8.0/MTurkR/man/SendTestEventNotification.Rd | 2 MTurkR-0.8.0/MTurkR/man/SetHITAsReviewing.Rd | 6 MTurkR-0.8.0/MTurkR/man/SetHITTypeNotification.Rd | 2 MTurkR-0.8.0/MTurkR/man/UpdateQualificationScore.Rd | 2 MTurkR-0.8.0/MTurkR/man/UpdateQualificationType.Rd | 2 MTurkR-0.8.0/MTurkR/man/UseCaseCategorization.Rd | 6 MTurkR-0.8.0/MTurkR/man/UseCaseScraping.Rd | 6 MTurkR-0.8.0/MTurkR/man/UseCaseSurvey.Rd | 4 MTurkR-0.8.0/MTurkR/man/XMLToDataFrame.Rd | 6 MTurkR-0.8.0/MTurkR/man/readlogfile.Rd | 6 MTurkR-0.8.0/MTurkR/man/wizard.Rd | 2 MTurkR-0.8.0/MTurkR/tests/testthat/tests.R | 302 +++++++++++--- 125 files changed, 2215 insertions(+), 1763 deletions(-)
Title: Builds Error Intervals
Description: Builds and analyzes error intervals for a particular model predictions assuming different distributions for noise in the data.
Author: Jesus Prada [aut,cre]
Maintainer: Jesus Prada <jesus.prada@estudiante.uam.es>
Diff between errint versions 0.1 dated 2016-01-18 and 1.0 dated 2017-01-23
DESCRIPTION | 12 - MD5 | 30 +-- NAMESPACE | 6 R/error_intervals.R | 341 +++++++++++++++++++++++++++--------- man/acc_intervals.Rd | 6 man/best_distribution.Rd | 7 man/build_err_int.Rd | 51 +++-- man/df_intervals.Rd | 4 man/error_interval.Rd | 8 man/error_interval.default.Rd | 4 man/print.error_interval.Rd | 2 man/print.summary.error_interval.Rd | 2 man/prob_dens_func.Rd | 17 + man/sort_distributions.Rd | 8 man/summary.error_interval.Rd | 4 man/summary.measure.Rd | 2 16 files changed, 359 insertions(+), 145 deletions(-)
Title: Quantify Relationship Between Developmental Rate and Temperature
in Ectotherms
Description: A set of functions to ease quantifying the relationship between developmental
rate and temperature. The package comprises a set of models and estimated parameters
borrowed from a literature review in ectotherms.
Author: Francois Rebaudo [aut, cre],
Quentin Struelens [aut]
Maintainer: Francois Rebaudo <francois.rebaudo@ird.fr>
Diff between devRate versions 0.1.0 dated 2016-08-29 and 0.1.1 dated 2017-01-23
devRate-0.1.0/devRate/data/hansen_11.RData |only devRate-0.1.0/devRate/inst/doc/example_tropical.R |only devRate-0.1.0/devRate/man/hansen_11.Rd |only devRate-0.1.1/devRate/DESCRIPTION | 10 devRate-0.1.1/devRate/MD5 | 166 ++--- devRate-0.1.1/devRate/NAMESPACE | 1 devRate-0.1.1/devRate/NEWS.md | 12 devRate-0.1.1/devRate/R/data.R | 600 +++++++++++++------ devRate-0.1.1/devRate/R/devRate_info.R | 51 + devRate-0.1.1/devRate/R/devRate_map.R | 11 devRate-0.1.1/devRate/R/devRate_nls.R | 64 ++ devRate-0.1.1/devRate/R/devRate_pheno.R | 2 devRate-0.1.1/devRate/build/vignette.rds |binary devRate-0.1.1/devRate/data/analytis_77.RData |binary devRate-0.1.1/devRate/data/bayoh_03.RData |only devRate-0.1.1/devRate/data/beta_95.RData |binary devRate-0.1.1/devRate/data/bieri1_83.RData |only devRate-0.1.1/devRate/data/briere1_99.RData |binary devRate-0.1.1/devRate/data/briere2_99.RData |binary devRate-0.1.1/devRate/data/campbell_74.RData |binary devRate-0.1.1/devRate/data/damos_08.RData |binary devRate-0.1.1/devRate/data/damos_11.RData |binary devRate-0.1.1/devRate/data/davidson_44.RData |binary devRate-0.1.1/devRate/data/devRateEqList.RData |binary devRate-0.1.1/devRate/data/harcourtYee_82.RData |binary devRate-0.1.1/devRate/data/hilbertLogan_83.RData |binary devRate-0.1.1/devRate/data/janisch_32.RData |binary devRate-0.1.1/devRate/data/kontodimas_04.RData |binary devRate-0.1.1/devRate/data/lactin1_95.RData |binary devRate-0.1.1/devRate/data/lactin2_95.RData |binary devRate-0.1.1/devRate/data/lamb_92.RData |binary devRate-0.1.1/devRate/data/logan10_76.RData |binary devRate-0.1.1/devRate/data/logan6_76.RData |binary devRate-0.1.1/devRate/data/perf2_11.RData |binary devRate-0.1.1/devRate/data/poly2.RData |binary devRate-0.1.1/devRate/data/poly4.RData |binary devRate-0.1.1/devRate/data/ratkowsky_82.RData |binary devRate-0.1.1/devRate/data/regniere_12.RData |binary devRate-0.1.1/devRate/data/rootsq_82.RData |binary devRate-0.1.1/devRate/data/schoolfieldHigh_81.RData |only devRate-0.1.1/devRate/data/schoolfieldLow_81.RData |only devRate-0.1.1/devRate/data/schoolfield_81.RData |binary devRate-0.1.1/devRate/data/sharpeDeMichele_77.RData |binary devRate-0.1.1/devRate/data/shi_11.RData |binary devRate-0.1.1/devRate/data/stinner_74.RData |binary devRate-0.1.1/devRate/data/taylor_81.RData |binary devRate-0.1.1/devRate/data/wagner_88.RData |only devRate-0.1.1/devRate/data/wang_82.RData |binary devRate-0.1.1/devRate/data/wangengel_98.RData |binary devRate-0.1.1/devRate/inst/doc/example_tropical.Rmd | 233 +++++++ devRate-0.1.1/devRate/inst/doc/example_tropical.html | 281 +++++++- devRate-0.1.1/devRate/man/analytis_77.Rd | 9 devRate-0.1.1/devRate/man/bayoh_03.Rd |only devRate-0.1.1/devRate/man/beta_95.Rd | 17 devRate-0.1.1/devRate/man/bieri1_83.Rd |only devRate-0.1.1/devRate/man/briere1_99.Rd | 10 devRate-0.1.1/devRate/man/briere2_99.Rd | 10 devRate-0.1.1/devRate/man/campbell_74.Rd | 9 devRate-0.1.1/devRate/man/damos_08.Rd | 10 devRate-0.1.1/devRate/man/damos_11.Rd | 9 devRate-0.1.1/devRate/man/davidson_44.Rd | 11 devRate-0.1.1/devRate/man/devRateEqList.Rd | 6 devRate-0.1.1/devRate/man/devRateMap.Rd | 13 devRate-0.1.1/devRate/man/devRatePrint.Rd |only devRate-0.1.1/devRate/man/harcourtYee_82.Rd | 6 devRate-0.1.1/devRate/man/hilbertLogan_83.Rd | 10 devRate-0.1.1/devRate/man/janisch_32.Rd | 20 devRate-0.1.1/devRate/man/kontodimas_04.Rd | 9 devRate-0.1.1/devRate/man/lactin1_95.Rd | 9 devRate-0.1.1/devRate/man/lactin2_95.Rd | 9 devRate-0.1.1/devRate/man/lamb_92.Rd | 11 devRate-0.1.1/devRate/man/logan10_76.Rd | 9 devRate-0.1.1/devRate/man/logan6_76.Rd | 10 devRate-0.1.1/devRate/man/perf2_11.Rd | 22 devRate-0.1.1/devRate/man/poly2.Rd | 8 devRate-0.1.1/devRate/man/poly4.Rd | 8 devRate-0.1.1/devRate/man/ratkowsky_82.Rd | 24 devRate-0.1.1/devRate/man/regniere_12.Rd | 15 devRate-0.1.1/devRate/man/rootsq_82.Rd | 14 devRate-0.1.1/devRate/man/schoolfieldHigh_81.Rd |only devRate-0.1.1/devRate/man/schoolfieldLow_81.Rd |only devRate-0.1.1/devRate/man/schoolfield_81.Rd | 15 devRate-0.1.1/devRate/man/sharpeDeMichele_77.Rd | 9 devRate-0.1.1/devRate/man/shi_11.Rd | 15 devRate-0.1.1/devRate/man/stinner_74.Rd | 10 devRate-0.1.1/devRate/man/taylor_81.Rd | 10 devRate-0.1.1/devRate/man/wagner_88.Rd |only devRate-0.1.1/devRate/man/wang_82.Rd | 8 devRate-0.1.1/devRate/man/wangengel_98.Rd | 14 devRate-0.1.1/devRate/tests |only devRate-0.1.1/devRate/vignettes/example_tropical.Rmd | 233 +++++++ 91 files changed, 1593 insertions(+), 440 deletions(-)