Title: A Toolbox for Multivariate Meta-Analysis
Description: A toolbox for meta-analysis. This package includes a collection of functions for (1) implementing robust multivariate meta-analysis of continuous or binary outcomes; and (2) a bivariate Egger's test for detecting publication bias.
Author: Yong Chen [aut, cre],
Chuan Hong [aut],
Haitao Chu [ctb],
Yulun Liu [ctb]
Maintainer: Yong Chen <ychen123@upenn.edu>
Diff between xmeta versions 1.1-2 dated 2016-10-04 and 1.1-3 dated 2017-02-06
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- man/xmeta-package.Rd | 2 +- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Discovery, Access and Manipulation of 'TreeBASE' Phylogenies
Description: Interface to the API for 'TreeBASE' <http://treebase.org>
from 'R.' 'TreeBASE' is a repository of user-submitted phylogenetic
trees (of species, population, or genes) and the data used to create
them.
Author: Carl Boettiger [aut, cre],
Duncan Temple Lang [aut]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between treebase versions 0.1.3 dated 2016-09-05 and 0.1.4 dated 2017-02-06
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS | 7 ++++++- build/vignette.rds |binary inst/doc/vignette.html | 4 ++-- 5 files changed, 17 insertions(+), 12 deletions(-)
Title: Calculates Likelihood Support Intervals for Common Data Types
Description: Calculates likelihood based support intervals for
several common data types including binomial, Poisson, normal, lm(), and
glm(). For the binomial, Poisson, and normal data likelihood intervals are
calculated via root finding algorithm. Additional parameters allow the
user to specify whether they would like to receive a parametric bootstrap
estimate of the confidence level of said support interval. For lm() and glm(),
the function returns profile likelihoods for each coefficient in the model.
Author: Derek Smith
Maintainer: Derek Smith <derek.smith@vanderbilt.edu>
Diff between supportInt versions 1.0 dated 2016-05-06 and 1.1 dated 2017-02-06
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/normLikSI.R | 17 ++++++++++++----- build/partial.rdb |binary man/normLikSI.Rd | 5 ++++- 5 files changed, 25 insertions(+), 15 deletions(-)
Title: Simple Features for R
Description: Support for simple features, a standardized way to encode spatial data, with bindings
to GDAL, GEOS and Proj.4.
Author: Edzer Pebesma [aut, cre],
Roger Bivand [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Michael Sumner [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb],
Etienne Racine [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 0.3-2 dated 2017-02-04 and 0.3-4 dated 2017-02-06
sf-0.3-2/sf/configure.in |only sf-0.3-2/sf/tests/testthat/x |only sf-0.3-4/sf/DESCRIPTION | 8 - sf-0.3-4/sf/MD5 | 133 ++++++++++++++++----------------- sf-0.3-4/sf/NAMESPACE | 6 - sf-0.3-4/sf/R/agr.R | 18 ++-- sf-0.3-4/sf/R/crs.R | 2 sf-0.3-4/sf/R/geom.R | 43 ++++++---- sf-0.3-4/sf/R/init.R | 2 sf-0.3-4/sf/R/sf.R | 14 ++- sf-0.3-4/sf/configure.ac |only sf-0.3-4/sf/inst/doc/sf1.html | 8 - sf-0.3-4/sf/inst/doc/sf2.html | 10 +- sf-0.3-4/sf/man/Ops.sfg.Rd | 1 sf-0.3-4/sf/man/aggregate.sf.Rd | 1 sf-0.3-4/sf/man/as_Spatial.Rd | 1 sf-0.3-4/sf/man/bgMap.Rd | 1 sf-0.3-4/sf/man/bind.Rd | 8 - sf-0.3-4/sf/man/dplyr.Rd | 40 ++++++--- sf-0.3-4/sf/man/extension_map.Rd | 1 sf-0.3-4/sf/man/geos.Rd | 124 ++++++++++++++++++++---------- sf-0.3-4/sf/man/is_driver_available.Rd | 1 sf-0.3-4/sf/man/is_driver_can.Rd | 1 sf-0.3-4/sf/man/merge.sf.Rd | 1 sf-0.3-4/sf/man/plot.Rd | 22 +++-- sf-0.3-4/sf/man/prefix_map.Rd | 1 sf-0.3-4/sf/man/rawToHex.Rd | 1 sf-0.3-4/sf/man/sf.Rd | 4 sf-0.3-4/sf/man/sf_extSoftVersion.Rd | 1 sf-0.3-4/sf/man/sfc.Rd | 1 sf-0.3-4/sf/man/st.Rd | 28 ++++-- sf-0.3-4/sf/man/st_agr.Rd | 4 sf-0.3-4/sf/man/st_as_binary.Rd | 3 sf-0.3-4/sf/man/st_as_grob.Rd | 1 sf-0.3-4/sf/man/st_as_sf.Rd | 9 +- sf-0.3-4/sf/man/st_as_sfc.Rd | 19 +++- sf-0.3-4/sf/man/st_as_text.Rd | 8 + sf-0.3-4/sf/man/st_bbox.Rd | 40 ++++++--- sf-0.3-4/sf/man/st_cast.Rd | 20 +++- sf-0.3-4/sf/man/st_cast_sfc_default.Rd | 1 sf-0.3-4/sf/man/st_crs.Rd | 25 ++++-- sf-0.3-4/sf/man/st_drivers.Rd | 1 sf-0.3-4/sf/man/st_geometry.Rd | 7 + sf-0.3-4/sf/man/st_geometry_type.Rd | 1 sf-0.3-4/sf/man/st_graticule.Rd | 2 sf-0.3-4/sf/man/st_interpolate_aw.Rd | 1 sf-0.3-4/sf/man/st_is.Rd | 1 sf-0.3-4/sf/man/st_is_longlat.Rd | 1 sf-0.3-4/sf/man/st_join.Rd | 1 sf-0.3-4/sf/man/st_layers.Rd | 2 sf-0.3-4/sf/man/st_makegrid.Rd | 1 sf-0.3-4/sf/man/st_precision.Rd | 5 - sf-0.3-4/sf/man/st_read.Rd | 6 - sf-0.3-4/sf/man/st_transform.Rd | 6 - sf-0.3-4/sf/man/st_viewport.Rd | 1 sf-0.3-4/sf/man/st_write.Rd | 2 sf-0.3-4/sf/man/st_zm.Rd | 1 sf-0.3-4/sf/man/summary.sfc.Rd | 1 sf-0.3-4/sf/man/tibble.Rd | 4 sf-0.3-4/sf/src/gdal.cpp | 46 ----------- sf-0.3-4/sf/src/geos.cpp | 40 +++++---- sf-0.3-4/sf/src/wkb.cpp | 47 +++++++++++ sf-0.3-4/sf/src/wkb.h | 1 sf-0.3-4/sf/tests/dplyr.Rout.save | 14 +-- sf-0.3-4/sf/tests/geos.R | 18 ++-- sf-0.3-4/sf/tests/geos.Rout.save | 29 ++++--- sf-0.3-4/sf/tests/read.R | 4 sf-0.3-4/sf/tests/read.Rout.save | 16 --- sf-0.3-4/sf/tests/testthat/test_crs.R | 1 69 files changed, 510 insertions(+), 362 deletions(-)
Title: River Network Distance Computation and Applications
Description: Reads river network shape files and computes network distances.
Also included are a variety of computation and graphical tools designed
for fisheries telemetry research, such as minimum home range, kernel density
estimation, and clustering analysis using empirical k-functions with
a bootstrap envelope. Tools are also provided for editing the river
networks, meaning there is no reliance on external software.
Author: Matt Tyers [aut, cre]
Maintainer: Matt Tyers <matt.tyers@alaska.gov>
Diff between riverdist versions 0.13.0 dated 2016-12-21 and 0.13.1 dated 2017-02-06
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 12 +++++++++++- R/detectbraiding.R | 2 +- R/plotdensity.R | 23 ++++++++++++++++------- R/riverdist_1.R | 45 +++++++++++++++++++++++++++++++++++++++++++++ README.md | 2 +- man/plot.riverdensity.Rd | 4 +++- man/riverdist-package.Rd | 4 ++-- 9 files changed, 91 insertions(+), 25 deletions(-)
Title: Quantile-Adjusted Restaurant Grading
Description: Implementation of the food safety restaurant grading system adopted by Public Health - Seattle & King County (see Ashwood, Z.C., Elias, B., and Ho. D.E. "Improving the Reliability of Food Safety Disclosure: A Quantile Adjusted Restaurant Grading System for Seattle-King County" (working paper)). As reported in the accompanying paper, this package allows jurisdictions to easily implement refinements that address common challenges with unadjusted grading systems. First, in contrast to unadjusted grading, where the most recent single routine inspection is the primary determinant of a grade, grading inputs are allowed to be flexible. For instance, it is straightforward to base the grade on average inspection scores across multiple inspection cycles. Second, the package can identify quantile cutoffs by inputting substantively meaningful regulatory thresholds (e.g., the proportion of establishments receiving sufficient violation points to warrant a return visit). Third, the quantile adjustment equalizes the proportion of establishments in a flexible number of grading categories (e.g., A/B/C) across areas (e.g., ZIP codes, inspector areas) to account for inspector differences. Fourth, the package implements a refined quantile adjustment that addresses two limitations with the stats::quantile() function when applied to inspection score datasets with large numbers of score ties. The quantile adjustment algorithm iterates over quantiles until, over all restaurants in all areas, grading proportions are within a tolerance of desired global proportions. In addition the package allows a modified definition of "quantile" from "Nearest Rank". Instead of requiring that at least p[1]% of restaurants receive the top grade and at least (p[1]+p[2])% of restaurants receive the top or second best grade for quantiles p, the algorithm searches for cutoffs so that as close as possible p[1]% of restaurants receive the top grade, and as close as possible to p[2]% of restaurants receive the second top grade.
Author: Zoe Ashwood <zashwood@law.stanford.edu>,
Becky Elias <Becky.Elias@kingcounty.gov>,
Daniel E. Ho <dho@law.stanford.edu>
Maintainer: Zoe Ashwood <zashwood@law.stanford.edu>
Diff between QuantileGradeR versions 0.1 dated 2017-02-04 and 0.1.1 dated 2017-02-06
DESCRIPTION | 12 +++++++----- MD5 | 2 +- 2 files changed, 8 insertions(+), 6 deletions(-)
More information about QuantileGradeR at CRAN
Permanent link
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut],
Carolin Strobl [aut],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.1-2 dated 2016-11-28 and 1.2-0 dated 2017-02-06
DESCRIPTION | 8 +++--- MD5 | 24 +++++++++---------- R/MOB-Plot.R | 6 ++-- R/Plot.R | 4 +-- R/RandomForest.R | 6 ++-- inst/NEWS | 6 ++++ inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary src/Predict.c | 22 +++++++++++------ src/Predict.h | 3 ++ src/RandomForest.c | 8 ++++++ tests/Examples/party-Ex.Rout.save | 14 +++++------ tests/RandomForest-regtest.Rout.save | 44 +++++++++++++++++------------------ 13 files changed, 84 insertions(+), 61 deletions(-)
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: José Pinheiro [aut] (S version),
Douglas Bates [aut] (up to 2007),
Saikat DebRoy [ctb] (up to 2002),
Deepayan Sarkar [ctb] (up to 2005),
EISPACK authors [ctb] (src/rs.f),
Siem Heisterkamp [ctb] (Author fixed sigma),
Bert Van Willigen [ctb] (Programmer fixed sigma),
R-core [aut, cre]
Maintainer: R-core <R-core@R-project.org>
Diff between nlme versions 3.1-130 dated 2017-01-24 and 3.1-131 dated 2017-02-06
ChangeLog | 6 ++++++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- tests/sigma-fixed-etc.R | 3 ++- 4 files changed, 15 insertions(+), 8 deletions(-)
Title: An R Interface to the 'ROPTLIB' Library for Riemannian Manifold
Optimization
Description: An R interface to the 'ROPTLIB' optimization library (see <http://www.math.fsu.edu/~whuang2> for more information). Optimize real-valued functions over manifolds such as Stiefel, Grassmann, and Symmetric Positive Definite matrices.
Author: Kofi P. Adragni [aut, cre, cph],
Sean R. Martin [aut, cph],
Andrew M. Raim [aut, cph],
Wen Huang [aut, cph]
Maintainer: Kofi P. Adragni <kofi@umbc.edu>
Diff between ManifoldOptim versions 0.1.1 dated 2016-11-21 and 0.1.2 dated 2017-02-06
DESCRIPTION | 10 - MD5 | 28 +-- inst/examples/brockett/cpp_sourceCpp/driver-minimal.Rin | 14 - inst/examples/brockett/cpp_sourceCpp/driver.R | 16 +- inst/examples/brockett/cpp_standalone/brockett_problem.cpp | 15 -- inst/include/ManifoldOptimException.h | 6 inst/include/ManifoldOptimProblem.h | 10 - man/manifold.optim.Rd | 18 +- src/ManifoldOptim/BrockettProblem.cpp | 14 - src/ManifoldOptim/ManifoldOptimModule.cpp | 6 src/ManifoldOptim/ProblemAdapter.cpp | 93 +++++-------- src/ManifoldOptim/ProblemAdapter.h | 10 - src/ManifoldOptim/RProblem.cpp | 24 +-- src/ManifoldOptim/RProblem.h | 6 src/Others/def.h | 15 ++ 15 files changed, 138 insertions(+), 147 deletions(-)
Title: Linear Test Statistics for Permutation Inference
Description: Basic infrastructure for linear test statistics and permutation
inference in the framework of Strasser and Weber (1999) <http://epub.wu.ac.at/102/>.
This package must not be used by end-users. CRAN package 'coin' implements all
user interfaces and is ready to be used by anyone.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between libcoin versions 0.9-0 dated 2016-12-09 and 0.9-1 dated 2017-02-06
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/libcoin.R | 5 +++++ inst/NEWS.Rd | 14 +++++++++++++- src/Sums.c | 6 ++++-- src/libcoin-init.c | 1 + tests/bugfixes.R | 27 +++++++++++++++++++++++++++ tests/bugfixes.Rout.save | 33 ++++++++++++++++++++++++++++++--- 8 files changed, 91 insertions(+), 17 deletions(-)
Title: Efficient Jonckheere-Terpstra Test Statistics for Robust Machine
Learning and Genome-Wide Association Studies
Description: This 'Rcpp'-based package implements highly efficient functions for the calculation of the Jonckheere-Terpstra statistic. It can be used for a variety of applications, including feature selection in machine learning problems, or to conduct genome-wide association studies (GWAS) with multiple quantitative phenotypes. The code leverages 'OpenMP' directives for multi-core computing to reduce overall processing time.
Author: Jiaxing Lin, Alexander Sibley, Ivo Shterev, and Kouros Owzar
Maintainer: Jiaxing Lin <jiaxing.lin@duke.edu>
Diff between fastJT versions 1.0 dated 2017-01-27 and 1.0.1 dated 2017-02-06
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NEWS |only R/fastJT.select.R | 4 ++-- inst/doc/fastJT.Rnw | 2 +- inst/doc/fastJT.pdf |binary vignettes/fastJT.Rnw | 2 +- 7 files changed, 14 insertions(+), 13 deletions(-)
Title: Convert Country Names and Country Codes
Description: Standardize country names, convert them into one of
eleven coding schemes, convert between coding schemes, and
assign region descriptors.
Author: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between countrycode versions 0.18 dated 2014-12-29 and 0.19 dated 2017-02-06
DESCRIPTION | 9 + MD5 | 20 ++-- NAMESPACE | 2 NEWS | 40 ++++++++ R/countrycode-package.R | 19 ++-- R/countrycode.R | 210 +++++++++++++++++++++++++++++++++++---------- R/countrycode_data.R | 36 ++++++- data/countrycode_data.rda |binary man/countrycode-package.Rd | 20 ++-- man/countrycode.Rd | 56 ++++++++---- man/countrycode_data.Rd | 38 ++++++-- 11 files changed, 342 insertions(+), 108 deletions(-)
Title: Bayesian Inference for Factor Modeling
Description: Collection of procedures to perform Bayesian analysis on a variety
of factor models. Currently, it includes: Bayesian Exploratory Factor
Analysis (befa), an approach to dedicated factor analysis with stochastic
search on the structure of the factor loading matrix. The number of latent
factors, as well as the allocation of the manifest variables to the factors,
are not fixed a priori but determined during MCMC sampling.
More approaches will be included in future releases of this package.
Author: Rémi Piatek [aut, cre]
Maintainer: Rémi Piatek <remi.piatek@econ.ku.dk>
Diff between BayesFM versions 0.1.0 dated 2016-12-19 and 0.1.1 dated 2017-02-06
BayesFM-0.1.0/BayesFM/R/zzz.R |only BayesFM-0.1.1/BayesFM/DESCRIPTION | 10 BayesFM-0.1.1/BayesFM/MD5 | 59 ++- BayesFM-0.1.1/BayesFM/NAMESPACE | 41 ++ BayesFM-0.1.1/BayesFM/NEWS | 11 BayesFM-0.1.1/BayesFM/R/BayesFM.R | 20 + BayesFM-0.1.1/BayesFM/R/befa.R | 173 ++++++---- BayesFM-0.1.1/BayesFM/R/extract.data.R | 134 ++++---- BayesFM-0.1.1/BayesFM/R/plot.befa.R | 245 ++++++++++++--- BayesFM-0.1.1/BayesFM/R/plot.simul.R.prior.R |only BayesFM-0.1.1/BayesFM/R/plot.simul.nfac.prior.R |only BayesFM-0.1.1/BayesFM/R/post.column.switch.R | 18 - BayesFM-0.1.1/BayesFM/R/post.sign.switch.R | 32 - BayesFM-0.1.1/BayesFM/R/print.befa.R | 2 BayesFM-0.1.1/BayesFM/R/print.simul.R.prior.R |only BayesFM-0.1.1/BayesFM/R/print.simul.nfac.prior.R |only BayesFM-0.1.1/BayesFM/R/print.summary.befa.R | 1 BayesFM-0.1.1/BayesFM/R/print.summary.simul.R.prior.R |only BayesFM-0.1.1/BayesFM/R/print.summary.simul.nfac.prior.R |only BayesFM-0.1.1/BayesFM/R/simul.R.prior.R |only BayesFM-0.1.1/BayesFM/R/simul.dedic.facmod.R | 18 - BayesFM-0.1.1/BayesFM/R/simul.nfac.prior.R |only BayesFM-0.1.1/BayesFM/R/summary.befa.R | 29 - BayesFM-0.1.1/BayesFM/R/summary.simul.R.prior.R |only BayesFM-0.1.1/BayesFM/R/summary.simul.nfac.prior.R |only BayesFM-0.1.1/BayesFM/R/utils.R | 11 BayesFM-0.1.1/BayesFM/configure |only BayesFM-0.1.1/BayesFM/configure.ac |only BayesFM-0.1.1/BayesFM/man/befa.Rd | 111 ++++-- BayesFM-0.1.1/BayesFM/man/plot.befa.Rd |only BayesFM-0.1.1/BayesFM/man/post.column.switch.Rd | 18 - BayesFM-0.1.1/BayesFM/man/post.sign.switch.Rd | 31 - BayesFM-0.1.1/BayesFM/man/simul.R.prior.Rd |only BayesFM-0.1.1/BayesFM/man/simul.dedic.facmod.Rd | 17 - BayesFM-0.1.1/BayesFM/man/simul.nfac.prior.Rd |only BayesFM-0.1.1/BayesFM/man/summary.befa.Rd | 13 BayesFM-0.1.1/BayesFM/src/Makevars | 6 BayesFM-0.1.1/BayesFM/src/probability.f95 | 23 + BayesFM-0.1.1/BayesFM/src/simul_prior_nfac.f95 |only 39 files changed, 677 insertions(+), 346 deletions(-)
Title: A Companion to the e-Book "YaRrr!: The Pirate's Guide to R"
Description: Contains a mixture of functions and data sets referred to in the introductory e-book "YaRrr!: The Pirate's Guide to R". The latest version of the e-book is available for free at <https://www.thepiratesguidetor.com>.
Author: Nathaniel Phillips [aut, cre]
Maintainer: Nathaniel Phillips <yarrr.book@gmail.com>
Diff between yarrr versions 0.1.2 dated 2016-10-25 and 0.1.4 dated 2017-02-06
DESCRIPTION | 8 MD5 | 26 +-- NAMESPACE | 1 NEWS.md | 11 + R/pirateplot_function.R | 386 ++++++++++++++++++++++++++++++++++++++--------- R/zzz.R | 5 README.md | 23 +- build/vignette.rds |binary inst/doc/guide.html | 6 inst/doc/pirateplot.R | 25 ++- inst/doc/pirateplot.Rmd | 32 +++ inst/doc/pirateplot.html | 72 +++++--- man/pirateplot.Rd | 45 +++-- vignettes/pirateplot.Rmd | 32 +++ 14 files changed, 514 insertions(+), 158 deletions(-)
Title: In-Line Documentation for R
Description: Generate your Rd documentation, 'NAMESPACE' file, and collation
field using specially formatted comments. Writing documentation in-line
with code makes it easier to keep your documentation up-to-date as your
requirements change. 'Roxygen2' is inspired by the 'Doxygen' system for C++.
Author: Hadley Wickham [aut, cre, cph],
Peter Danenberg [aut, cph],
Manuel Eugster [aut, cph],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between roxygen2 versions 6.0.0 dated 2017-01-31 and 6.0.1 dated 2017-02-06
DESCRIPTION | 8 ++++---- MD5 | 27 ++++++++++++++------------- NEWS.md | 10 +++++++++- R/object-usage.R | 2 +- R/utils.R | 1 + inst/doc/collate.html | 4 ++-- inst/doc/formatting.html | 4 ++-- inst/doc/markdown.html | 4 ++-- inst/doc/namespace.html | 4 ++-- inst/doc/rd.html | 4 ++-- inst/doc/rdkeywords.html | 4 ++-- inst/doc/roxygen2.html | 4 ++-- tests/testthat/test-Rbuildignore.R | 8 ++++++++ tests/testthat/test-rd-usage.R | 8 ++++++++ vignettes/releases |only 15 files changed, 59 insertions(+), 33 deletions(-)
Title: Kernel Deep Stacking Networks
Description: Contains functions for estimation and model selection of kernel
deep stacking networks. The model selection includes direct optimization or
model based alternatives with arbitrary loss functions.
Author: Thomas Welchowski <welchow@imbie.meb.uni-bonn.de> and Matthias Schmid
<matthias.schmid@imbie.uni-bonn.de>
Maintainer: Thomas Welchowski <welchow@imbie.meb.uni-bonn.de>
Diff between kernDeepStackNet versions 1.0.1 dated 2016-02-01 and 2.0.0 dated 2017-02-06
kernDeepStackNet-1.0.1/kernDeepStackNet/man/fineTuneKDSN.Rd |only kernDeepStackNet-1.0.1/kernDeepStackNet/man/getEigenValues.Rd |only kernDeepStackNet-1.0.1/kernDeepStackNet/man/lossKDSN.Rd |only kernDeepStackNet-1.0.1/kernDeepStackNet/man/lossKDSNgivenModel.Rd |only kernDeepStackNet-1.0.1/kernDeepStackNet/man/tuneKDSN.Rd |only kernDeepStackNet-1.0.1/kernDeepStackNet/man/tuneLevelGridKDSN.Rd |only kernDeepStackNet-1.0.1/kernDeepStackNet/man/tuneLevelKDSN.Rd |only kernDeepStackNet-1.0.1/kernDeepStackNet/man/tuneMboCvKDSN.Rd |only kernDeepStackNet-1.0.1/kernDeepStackNet/man/tuneMboKDSN.Rd |only kernDeepStackNet-1.0.1/kernDeepStackNet/man/tuneMboLevelGridKDSN.Rd |only kernDeepStackNet-1.0.1/kernDeepStackNet/man/tuneMboLevelKDSN.Rd |only kernDeepStackNet-1.0.1/kernDeepStackNet/tests/KDSNdirectOpt_tests_tune_KDSN.R |only kernDeepStackNet-1.0.1/kernDeepStackNet/tests/KDSNdirectOpt_tests_tune_KDSN_level.R |only kernDeepStackNet-1.0.1/kernDeepStackNet/tests/KDSNfineTuneTests.R |only kernDeepStackNet-1.0.1/kernDeepStackNet/tests/KDSNlossFunc_tests_kDSN_loss.R |only kernDeepStackNet-1.0.1/kernDeepStackNet/tests/KDSNmodelBasedOpt_tests_tune_KDSN_EGO.R |only kernDeepStackNet-1.0.1/kernDeepStackNet/tests/KDSNmodelBasedOpt_tests_tune_KDSN_level_EGO.R |only kernDeepStackNet-2.0.0/kernDeepStackNet/DESCRIPTION | 14 kernDeepStackNet-2.0.0/kernDeepStackNet/MD5 | 91 kernDeepStackNet-2.0.0/kernDeepStackNet/NAMESPACE | 27 kernDeepStackNet-2.0.0/kernDeepStackNet/R/KDSNOptMisc.R | 497 ++- kernDeepStackNet-2.0.0/kernDeepStackNet/R/KDSNdirectOpt.R | 264 - kernDeepStackNet-2.0.0/kernDeepStackNet/R/KDSNestimation.R | 746 ++++ kernDeepStackNet-2.0.0/kernDeepStackNet/R/KDSNlossFunc.R | 353 +- kernDeepStackNet-2.0.0/kernDeepStackNet/R/KDSNmodelBasedOpt.R | 1612 +++++++--- kernDeepStackNet-2.0.0/kernDeepStackNet/R/KDSNvarSelect.R |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/EImod.Rd | 7 kernDeepStackNet-2.0.0/kernDeepStackNet/man/calcTrA.Rd | 4 kernDeepStackNet-2.0.0/kernDeepStackNet/man/calcTrAFast.Rd | 6 kernDeepStackNet-2.0.0/kernDeepStackNet/man/calcWdiag.Rd | 6 kernDeepStackNet-2.0.0/kernDeepStackNet/man/cancorRed.Rd |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/crossprodRcpp.Rd | 2 kernDeepStackNet-2.0.0/kernDeepStackNet/man/devStandard.Rd | 13 kernDeepStackNet-2.0.0/kernDeepStackNet/man/fineTuneCvKDSN.Rd | 13 kernDeepStackNet-2.0.0/kernDeepStackNet/man/fitEnsembleKDSN.Rd |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/fitKDSN.Rd | 51 kernDeepStackNet-2.0.0/kernDeepStackNet/man/gDerivMu.Rd | 2 kernDeepStackNet-2.0.0/kernDeepStackNet/man/getEigenValuesRcpp.Rd |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/kernDeepStackNet-package.Rd | 68 kernDeepStackNet-2.0.0/kernDeepStackNet/man/lossApprox.Rd |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/lossCvKDSN.Rd | 56 kernDeepStackNet-2.0.0/kernDeepStackNet/man/lossGCV.Rd | 9 kernDeepStackNet-2.0.0/kernDeepStackNet/man/lossSharedCvKDSN.Rd |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/lossSharedTestKDSN.Rd |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/mbo1d.Rd | 46 kernDeepStackNet-2.0.0/kernDeepStackNet/man/mboAll.Rd | 34 kernDeepStackNet-2.0.0/kernDeepStackNet/man/optimize1dMulti.Rd | 23 kernDeepStackNet-2.0.0/kernDeepStackNet/man/predLogProb.Rd | 2 kernDeepStackNet-2.0.0/kernDeepStackNet/man/predict.KDSN.Rd | 4 kernDeepStackNet-2.0.0/kernDeepStackNet/man/predict.KDSNensemble.Rd |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/predict.KDSNensembleDisk.Rd |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/rdcPart.Rd |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/rdcSubset.Rd |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/rdcVarOrder.Rd |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/rdcVarSelSubset.Rd |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/tuneMboLevelCvKDSN.Rd | 87 kernDeepStackNet-2.0.0/kernDeepStackNet/man/tuneMboLevelGcvKDSN.Rd |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/tuneMboSharedCvKDSN.Rd |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/tuneMboSharedSubsetKDSN.Rd |only kernDeepStackNet-2.0.0/kernDeepStackNet/man/varMu.Rd | 2 kernDeepStackNet-2.0.0/kernDeepStackNet/tests/KDSNdirectOpt_tests_optimize_1D_multi_KDSN.R | 72 kernDeepStackNet-2.0.0/kernDeepStackNet/tests/KDSNestimation_tests_fit_k_DSN_rft.R | 4 kernDeepStackNet-2.0.0/kernDeepStackNet/tests/KDSNestimation_tests_randomFourierTrans.R | 18 63 files changed, 2900 insertions(+), 1233 deletions(-)
More information about kernDeepStackNet at CRAN
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Title: Correct for Verification Bias in Diagnostic Accuracy & Agreement
Description: A standard test is observed on all specimens. We treat the second test (or sampled test) as being conducted on only a stratified sample of specimens. Verification Bias is this situation when the specimens for doing the second (sampled) test is not under investigator control. We treat the total sample as stratified two-phase sampling and use inverse probability weighting. We estimate diagnostic accuracy (category-specific classification probabilities; for binary tests reduces to specificity and sensitivity, and also predictive values) and agreement statistics (percent agreement, percent agreement by category, Kappa (unweighted), Kappa (quadratic weighted) and symmetry tests (reduces to McNemar's test for binary tests)). See: Katki HA, Li Y, Edelstein DW, Castle PE. Estimating the agreement and diagnostic accuracy of two diagnostic tests when one test is conducted on only a subsample of specimens. Stat Med. 2012 Feb 28; 31(5) <doi:10.1002/sim.4422>.
Author: Hormuzd A. Katki and David W. Edelstein
Maintainer: Hormuzd Katki <katkih@mail.nih.gov>
Diff between CompareTests versions 1.1 dated 2015-07-12 and 1.2 dated 2017-02-06
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/CompareTests.R | 42 ++++++++++++++++++++++++++++++++---------- R/fulltable.R | 6 ++++-- 4 files changed, 44 insertions(+), 20 deletions(-)
Title: Zelig Choice Models
Description: Add-on package for Zelig 5. Enables the use of a variety of logit
and probit regressions.
Author: Christine. Choirat [aut],
Christopher Gandrud [aut, cre],
James Honaker [aut],
Kosuke Imai [aut],
Gary King [aut],
Olivia Lau [aut]
Maintainer: Christopher Gandrud <zelig.zee@gmail.com>
Diff between ZeligChoice versions 0.9-2 dated 2017-02-02 and 0.9-3 dated 2017-02-06
DESCRIPTION | 10 +++++----- MD5 | 7 ++++--- NEWS | 7 +++++++ R/model-mlogit.R | 2 +- tests/testthat/test-mlogit.R |only 5 files changed, 17 insertions(+), 9 deletions(-)
More information about samplingDataCRT at CRAN
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Title: A Shiny GUI for some Parameter Estimation Examples
Description: Allows specification and fitting of some parameter
estimation examples inspired by time-resolved spectroscopy via
a Shiny GUI.
Author: Joris Snellenburg [cre, aut],
Katharine Mullen [aut],
Ivo van Stokkum [aut]
Maintainer: Joris Snellenburg <j.snellenburg@vu.nl>
Diff between paramGUI versions 2.0 dated 2016-06-16 and 2.1 dated 2017-02-06
DESCRIPTION | 6 MD5 | 6 R/paramGUI.R | 1202 +++++++++++++++++++++--------------------- inst/shinyApps/paramGUI/app.R | 1172 ++++++++++++++++++++-------------------- 4 files changed, 1196 insertions(+), 1190 deletions(-)
Title: Functions for Reading Ontologies into R
Description: Functions for reading ontologies into R as lists and manipulating sets of ontological terms - 'ontologyX: A suite of R packages for working with ontological data', Greene et al 2017 <doi:10.1093/bioinformatics/btw763>.
Author: Daniel Greene <dg333@cam.ac.uk>
Maintainer: Daniel Greene <dg333@cam.ac.uk>
Diff between ontologyIndex versions 2.3 dated 2016-11-23 and 2.4 dated 2017-02-06
DESCRIPTION | 10 +++++----- MD5 | 23 ++++++++++++----------- R/data.R | 3 ++- R/generic.R | 13 +++++++++++-- inst/CITATION |only inst/doc/intro-to-ontologyX.R | 2 +- inst/doc/intro-to-ontologyX.Rmd | 4 ++-- inst/doc/intro-to-ontologyX.html | 6 +++--- inst/doc/reading-ontologies.R | 2 +- inst/doc/reading-ontologies.Rmd | 2 +- inst/doc/reading-ontologies.html | 6 +++--- vignettes/intro-to-ontologyX.Rmd | 4 ++-- vignettes/reading-ontologies.Rmd | 2 +- 13 files changed, 44 insertions(+), 33 deletions(-)
Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre, dtc],
Michael Dietze [aut],
Christoph Burow [aut, trl, dtc],
Margret C. Fuchs [aut],
Christoph Schmidt [aut],
Manfred Fischer [aut, trl],
Johannes Friedrich [aut],
Norbert Mercier [ctb],
Rachel K. Smedley [ctb],
Claire Christophe [ctb],
Antoine Zink [ctb],
Julie Durcan [ctb],
Georgina King [ctb, dtc],
Anne Philippe [ctb],
Guillaume Guerin [ctb],
Markus Fuchs [ths]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>
Diff between Luminescence versions 0.6.4 dated 2016-09-09 and 0.7.0 dated 2017-02-06
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Luminescence-0.7.0/Luminescence/man/PSL2Risoe.BINfileData.Rd |only Luminescence-0.7.0/Luminescence/man/RLum-class.Rd | 15 Luminescence-0.7.0/Luminescence/man/RLum.Analysis-class.Rd | 44 Luminescence-0.7.0/Luminescence/man/RLum.Data-class.Rd | 8 Luminescence-0.7.0/Luminescence/man/RLum.Data.Curve-class.Rd | 46 Luminescence-0.7.0/Luminescence/man/RLum.Data.Image-class.Rd | 19 Luminescence-0.7.0/Luminescence/man/RLum.Data.Spectrum-class.Rd | 19 Luminescence-0.7.0/Luminescence/man/RLum.Results-class.Rd | 19 Luminescence-0.7.0/Luminescence/man/Risoe.BINfileData-class.Rd | 23 Luminescence-0.7.0/Luminescence/man/Risoe.BINfileData2RLum.Analysis.Rd | 21 Luminescence-0.7.0/Luminescence/man/Second2Gray.Rd | 19 Luminescence-0.7.0/Luminescence/man/analyse_FadingMeasurement.Rd |only Luminescence-0.7.0/Luminescence/man/analyse_IRSAR.RF.Rd | 155 +- Luminescence-0.7.0/Luminescence/man/analyse_SAR.CWOSL.Rd | 19 Luminescence-0.7.0/Luminescence/man/analyse_SAR.TL.Rd | 15 Luminescence-0.7.0/Luminescence/man/analyse_baSAR.Rd | 28 Luminescence-0.7.0/Luminescence/man/analyse_pIRIRSequence.Rd | 17 Luminescence-0.7.0/Luminescence/man/analyse_portableOSL.Rd |only Luminescence-0.7.0/Luminescence/man/app_RLum.Rd | 11 Luminescence-0.7.0/Luminescence/man/apply_CosmicRayRemoval.Rd | 15 Luminescence-0.7.0/Luminescence/man/apply_EfficiencyCorrection.Rd | 15 Luminescence-0.7.0/Luminescence/man/as.Rd | 9 Luminescence-0.7.0/Luminescence/man/bin_RLum.Data.Rd | 13 Luminescence-0.7.0/Luminescence/man/calc_AliquotSize.Rd | 34 Luminescence-0.7.0/Luminescence/man/calc_AverageDose.Rd |only Luminescence-0.7.0/Luminescence/man/calc_CentralDose.Rd | 29 Luminescence-0.7.0/Luminescence/man/calc_CommonDose.Rd | 25 Luminescence-0.7.0/Luminescence/man/calc_CosmicDoseRate.Rd | 19 Luminescence-0.7.0/Luminescence/man/calc_FadingCorr.Rd | 23 Luminescence-0.7.0/Luminescence/man/calc_FastRatio.Rd | 30 Luminescence-0.7.0/Luminescence/man/calc_FiniteMixture.Rd | 17 Luminescence-0.7.0/Luminescence/man/calc_FuchsLang2001.Rd | 15 Luminescence-0.7.0/Luminescence/man/calc_HomogeneityTest.Rd | 13 Luminescence-0.7.0/Luminescence/man/calc_IEU.Rd | 17 Luminescence-0.7.0/Luminescence/man/calc_Kars2008.Rd |only Luminescence-0.7.0/Luminescence/man/calc_MaxDose.Rd | 98 - Luminescence-0.7.0/Luminescence/man/calc_MinDose.Rd | 130 + Luminescence-0.7.0/Luminescence/man/calc_OSLLxTxRatio.Rd | 31 Luminescence-0.7.0/Luminescence/man/calc_SourceDoseRate.Rd | 15 Luminescence-0.7.0/Luminescence/man/calc_Statistics.Rd | 21 Luminescence-0.7.0/Luminescence/man/calc_TLLxTxRatio.Rd | 30 Luminescence-0.7.0/Luminescence/man/calc_ThermalLifetime.Rd | 13 Luminescence-0.7.0/Luminescence/man/calc_gSGC.Rd | 15 Luminescence-0.7.0/Luminescence/man/convert_BIN2CSV.Rd |only Luminescence-0.7.0/Luminescence/man/convert_Daybreak2CSV.Rd |only Luminescence-0.7.0/Luminescence/man/convert_PSL2CSV.Rd |only Luminescence-0.7.0/Luminescence/man/convert_XSYG2CSV.Rd |only Luminescence-0.7.0/Luminescence/man/extract_IrradiationTimes.Rd | 15 Luminescence-0.7.0/Luminescence/man/fit_CWCurve.Rd | 21 Luminescence-0.7.0/Luminescence/man/fit_LMCurve.Rd | 23 Luminescence-0.7.0/Luminescence/man/get_Layout.Rd | 7 Luminescence-0.7.0/Luminescence/man/get_Quote.Rd | 9 Luminescence-0.7.0/Luminescence/man/get_RLum.Rd | 22 Luminescence-0.7.0/Luminescence/man/get_Risoe.BINfileData.Rd | 13 Luminescence-0.7.0/Luminescence/man/get_rightAnswer.Rd | 7 Luminescence-0.7.0/Luminescence/man/install_DevelopmentVersion.Rd |only Luminescence-0.7.0/Luminescence/man/length_RLum.Rd | 15 Luminescence-0.7.0/Luminescence/man/merge_RLum.Analysis.Rd | 15 Luminescence-0.7.0/Luminescence/man/merge_RLum.Data.Curve.Rd | 23 Luminescence-0.7.0/Luminescence/man/merge_RLum.Rd | 15 Luminescence-0.7.0/Luminescence/man/merge_RLum.Results.Rd | 7 Luminescence-0.7.0/Luminescence/man/merge_Risoe.BINfileData.Rd | 17 Luminescence-0.7.0/Luminescence/man/methods_RLum.Rd | 114 - Luminescence-0.7.0/Luminescence/man/model_LuminescenceSignals.Rd | 50 Luminescence-0.7.0/Luminescence/man/names_RLum.Rd | 15 Luminescence-0.7.0/Luminescence/man/plot_AbanicoPlot.Rd | 23 Luminescence-0.7.0/Luminescence/man/plot_DRTResults.Rd | 17 Luminescence-0.7.0/Luminescence/man/plot_DetPlot.Rd | 15 Luminescence-0.7.0/Luminescence/man/plot_FilterCombinations.Rd | 15 Luminescence-0.7.0/Luminescence/man/plot_GrowthCurve.Rd | 39 Luminescence-0.7.0/Luminescence/man/plot_Histogram.Rd | 11 Luminescence-0.7.0/Luminescence/man/plot_KDE.Rd | 19 Luminescence-0.7.0/Luminescence/man/plot_NRt.Rd | 12 Luminescence-0.7.0/Luminescence/man/plot_RLum.Analysis.Rd | 32 Luminescence-0.7.0/Luminescence/man/plot_RLum.Data.Curve.Rd | 17 Luminescence-0.7.0/Luminescence/man/plot_RLum.Data.Image.Rd | 15 Luminescence-0.7.0/Luminescence/man/plot_RLum.Data.Spectrum.Rd | 33 Luminescence-0.7.0/Luminescence/man/plot_RLum.Rd | 17 Luminescence-0.7.0/Luminescence/man/plot_RLum.Results.Rd | 17 Luminescence-0.7.0/Luminescence/man/plot_RadialPlot.Rd | 31 Luminescence-0.7.0/Luminescence/man/plot_Risoe.BINfileData.Rd | 15 Luminescence-0.7.0/Luminescence/man/plot_ViolinPlot.Rd | 15 Luminescence-0.7.0/Luminescence/man/read_BIN2R.Rd | 24 Luminescence-0.7.0/Luminescence/man/read_Daybreak2R.Rd | 42 Luminescence-0.7.0/Luminescence/man/read_PSL2R.Rd |only Luminescence-0.7.0/Luminescence/man/read_SPE2R.Rd | 20 Luminescence-0.7.0/Luminescence/man/read_XSYG2R.Rd | 17 Luminescence-0.7.0/Luminescence/man/replicate_RLum.Rd | 13 Luminescence-0.7.0/Luminescence/man/report_RLum.Rd | 13 Luminescence-0.7.0/Luminescence/man/sTeve.Rd | 12 Luminescence-0.7.0/Luminescence/man/set_RLum.Rd | 17 Luminescence-0.7.0/Luminescence/man/set_Risoe.BINfileData.Rd | 15 Luminescence-0.7.0/Luminescence/man/smooth_RLum.Rd |only Luminescence-0.7.0/Luminescence/man/structure_RLum.Rd | 15 Luminescence-0.7.0/Luminescence/man/template_DRAC.Rd | 14 Luminescence-0.7.0/Luminescence/man/tune_Data.Rd | 13 Luminescence-0.7.0/Luminescence/man/use_DRAC.Rd | 21 Luminescence-0.7.0/Luminescence/man/verify_SingleGrainData.Rd | 31 Luminescence-0.7.0/Luminescence/man/write_R2BIN.Rd | 17 Luminescence-0.7.0/Luminescence/man/write_RLum2CSV.Rd |only Luminescence-0.7.0/Luminescence/src/RcppExports.cpp | 32 Luminescence-0.7.0/Luminescence/src/analyse_IRSARRF_SRS.cpp | 149 +- Luminescence-0.7.0/Luminescence/src/create_RLumDataCurve_matrix.cpp |only Luminescence-0.7.0/Luminescence/tests |only 205 files changed, 5165 insertions(+), 2372 deletions(-)
Title: Binarization and Trinarization of One-Dimensional Data
Description: Provides methods for the binarization and trinarization of one-dimensional data and some visualization functions.
Author: Stefan Mundus, Christoph Müssel, Florian Schmid, Ludwig Lausser, Tamara J. Blätte, Martin Hopfensitz, Hans A. Kestler
Maintainer: Hans Kestler <hans.kestler@uni-ulm.de>
Diff between BiTrinA versions 1.1 dated 2015-08-11 and 1.2 dated 2017-02-06
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/Vignette.Rnw | 2 +- inst/doc/Vignette.pdf |binary vignettes/Vignette.Rnw | 2 +- 6 files changed, 11 insertions(+), 11 deletions(-)
Title: Binarization of One-Dimensional Data
Description: Provides methods for the binarization of one-dimensional data and some visualization functions.
Author: Stefan Mundus, Christoph Müssel, Florian Schmid, Ludwig Lausser, Tamara J. Blätte, Martin Hopfensitz, Hans A. Kestler
Maintainer: Hans Kestler <hans.kestler@uni-ulm.de>
Diff between Binarize versions 1.1 dated 2015-07-15 and 1.2 dated 2017-02-06
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/Vignette.Rnw | 2 +- inst/doc/Vignette.pdf |binary vignettes/Vignette.Rnw | 2 +- 6 files changed, 11 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-11 0.1.0
Title: Test Analysis Modules
Description:
Includes marginal maximum likelihood estimation of uni- and
multidimensional item response models (Rasch, 2PL, 3PL,
Generalized Partial Credit, Multi Facets,
Nominal Item Response, Structured Latent Class Analysis,
Mixture Distribution IRT Models, Located Latent Class Models)
and joint maximum likelihood estimation for models
from the Rasch family.
Latent regression models and plausible value imputation are
also supported.
Author:
Thomas Kiefer [aut], Alexander Robitzsch [aut, cre], Margaret Wu [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between TAM versions 1.99992-0 dated 2017-01-23 and 1.99993-0 dated 2017-02-06
DESCRIPTION | 8 MD5 | 282 +++++++++++++++++----------------- R/IRT.data.tam.R | 2 R/IRT.drawPV.R | 2 R/IRT.expectedCounts.tam.R | 2 R/IRT.factor.scores.tam.R | 2 R/IRT.informationCurve.R | 2 R/IRT.irfprob.tam.R | 2 R/IRT.itemfit.R | 2 R/IRT.likelihood.TAM.R | 2 R/IRT.linearCFA.R | 2 R/IRT.modelfit.tam.R | 2 R/IRT.residuals.R | 2 R/IRT.simulate.R | 2 R/IRT.threshold.R | 2 R/IRT.truescore.R | 2 R/IRTLikelihood.ctt.R | 2 R/Mstep_slope.v2.R | 13 - R/TAM-internal_helper.R | 2 R/TAM.ic.R | 2 R/TAM.itempartable.R | 2 R/TAM_utils.R | 2 R/WLErel.R | 2 R/acceleration_algorithm.R | 2 R/add.colnames.resp.R | 2 R/anova.tam.R | 2 R/calc_prob.v5.R | 2 R/cfa.extract.itempars.R | 2 R/create.deltaDesign.R | 2 R/designMatrices.mfr_aux.R | 9 - R/dmvnorm_TAM.R | 6 R/doparse.R | 2 R/latreg.mstep.regression.R | 14 - R/latreg_TAM.ic.R | 2 R/lavpartable2lavsyntax.R | 2 R/logLik_tam.R | 2 R/mfr.dataprep.R | 4 R/mml.3pl.TAM.ic.R | 2 R/mml.3pl.calc_prob.v5.R | 2 R/mml.3pl.distrubutionmoments.R | 2 R/msq.itemfit.R | 2 R/msq.itemfitWLE.R | 2 R/mstep.regression.R | 2 R/plot.IRT.informationCurves.R | 4 R/plot.ctt.R | 2 R/plot.tam.R | 14 - R/plotDevianceTAM.R | 2 R/predict.tam.R | 2 R/print.tam.R | 2 R/print.tam.wle.R | 2 R/rbind.twomatrices.R | 2 R/split.syn.string.R | 2 R/summary.msq.itemfit.R | 2 R/summary.msq.itemfitWLE.R | 2 R/summary.tam.fit.R | 2 R/summary.tamaan.3pl.intro.R | 2 R/summary.tamaan.aux.R | 2 R/tam.Q3.R | 2 R/tam.R | 2 R/tam.fa.R | 2 R/tam.fit.R | 12 - R/tam.jml.xsi2.R | 12 - R/tam.mml.3pl.est.guessing.R | 2 R/tam.mml.3pl.est.intercepts.R | 8 R/tam.mml.3pl.est.slopes.R | 2 R/tam.mml.3pl.preproc.R | 2 R/tam.modelfit.func.R | 2 R/tam.parameterfix.defaults.R | 2 R/tam.pv.R | 6 R/tam_mml_3pl_calc_exp.R | 2 R/tam_mml_3pl_calc_ll.R | 8 R/tam_mml_3pl_calc_ll_est_guessing.R | 6 R/tam_mml_3pl_calc_prob.R | 2 R/tam_mml_3pl_calc_total_ll.R | 6 R/tam_mml_3pl_difference_quotient.R | 6 R/tam_mml_3pl_mstep_regression.R | 6 R/tam_mml_3pl_vec_add_increment.R | 4 R/tam_mml_compute_AXsi.R | 6 R/tam_mml_mstep_xsi.R | 6 R/tamaan.3pl.lca.R | 2 R/tamaanify.R | 2 R/tamaanify.create.Q.R | 2 R/tamaanify.modelprior.R | 2 R/tamaanify.tam.mml.3pl.deltadesign.R | 2 R/tamcat.R | 2 R/tampv2datalist.R | 2 R/weighted_mean.R | 2 R/weighted_quantile.R | 2 R/weighted_skewness.R | 2 R/weighted_table.R | 2 R/weighted_var.R | 2 R/zzz.R | 4 inst/CITATION | 6 inst/NEWS | 22 ++ man/IRT.WrightMap.Rd | 16 - man/IRT.data.tam.Rd | 2 man/IRT.drawPV.Rd | 2 man/IRT.expectedCounts.tam.Rd | 2 man/IRT.factor.scores.tam.Rd | 2 man/IRT.informationCurves.Rd | 16 - man/IRT.irfprob.tam.Rd | 2 man/IRT.itemfit.Rd | 6 man/IRT.likelihood.tam.Rd | 2 man/IRT.linearCFA.Rd | 8 man/IRT.residuals.Rd | 4 man/IRT.simulate.Rd | 38 ++-- man/IRT.threshold.Rd | 12 - man/IRT.truescore.Rd | 12 - man/IRTLikelihood.cfa.Rd | 8 man/IRTLikelihood.ctt.Rd | 8 man/TAM-package.Rd | 4 man/anova.tam.Rd | 8 man/cfa.extract.itempars.Rd | 10 - man/data.cqc.Rd | 24 +- man/data.fims.Aus.Jpn.Rd | 4 man/data.geiser.Rd | 14 - man/data.janssen.Rd | 4 man/data.numeracy.Rd | 12 - man/data.sim.mfr.Rd | 34 ++-- man/data.sim.rasch.Rd | 14 - man/data.timssAusTwn.Rd | 16 - man/designMatrices.Rd | 8 man/doparse.Rd | 4 man/lavaanify.IRT.Rd | 14 - man/msq.itemfit.Rd | 38 ++-- man/plot.tam.Rd | 4 man/plotDevianceTAM.Rd | 2 man/predict.Rd | 2 man/tam.ctt.Rd | 20 +- man/tam.fa.Rd | 8 man/tam.fit.Rd | 20 +- man/tam.jml.Rd | 32 +-- man/tam.latreg.Rd | 22 +- man/tam.mml.3pl.Rd | 86 +++++----- man/tam.mml.Rd | 252 +++++++++++++++--------------- man/tam.modelfit.Rd | 26 +-- man/tam.pv.Rd | 46 ++--- man/tam.se.Rd | 8 man/tam.threshold.Rd | 12 - man/tam.wle.Rd | 20 +- man/tamaan.Rd | 38 ++-- man/tamaanify.Rd | 10 - 142 files changed, 799 insertions(+), 769 deletions(-)
Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, PCA and correlation matrices, cluster analyses, scatter
plots, Likert scales, effects plots of regression models (including interaction
terms) and much more. This package supports labelled data.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 2.2.1 dated 2017-01-10 and 2.3.0 dated 2017-02-06
DESCRIPTION | 19 MD5 | 191 ++--- NAMESPACE | 464 ++++++------ NEWS | 807 ++++++++++----------- NEWS.md | 204 ++--- R/helpfunctions.R | 128 ++- R/sjPlotClusterAnalysis.R | 1703 ++++++++++++++++++++++----------------------- R/sjPlotFrequencies.R | 227 +++-- R/sjPlotGroupFrequencies.R | 11 R/sjPlotGroupPropTable.R | 533 +++++++------- R/sjPlotInteractions.R | 34 R/sjPlotKfoldCV.R | 137 ++- R/sjPlotLinreg.R | 83 -- R/sjPlotOdds.R | 268 ++++--- R/sjPlotPCA.R | 31 R/sjPlotPearsonsChi2Test.R | 243 +++--- R/sjPlotSetTheme.R | 1514 ++++++++++++++++++++-------------------- R/sjPlotStackFrequencies.R | 768 ++++++++++---------- R/sjTabCorr.R | 958 ++++++++++++------------- R/sjTabFrequencies.R | 8 R/sjTabItemAnalysis.R | 20 R/sjTabLinReg.R | 2 R/sjTabOdds.R | 40 - R/sjTabPCA.R | 1089 ++++++++++++++-------------- R/sjTabPropTable.R | 186 +++- R/sjTabSPSS.R | 191 ++--- R/sjTabStackFrq.R | 942 ++++++++++++------------ README.md | 3 build/partial.rdb |binary build/vignette.rds |only inst/doc |only man/dist_chisq.Rd | 119 +-- man/dist_f.Rd | 109 +- man/dist_norm.Rd | 107 +- man/dist_t.Rd | 105 +- man/plot_grid.Rd | 85 +- man/save_plot.Rd | 105 +- man/set_theme.Rd | 93 +- man/sjPlot-package.Rd | 91 +- man/sjc.cluster.Rd | 185 ++-- man/sjc.dend.Rd | 103 +- man/sjc.elbow.Rd | 65 - man/sjc.grpdisc.Rd | 99 +- man/sjc.kgap.Rd | 133 +-- man/sjc.qclus.Rd | 345 ++++----- man/sjp.aov1.Rd | 211 ++--- man/sjp.chi2.Rd | 125 +-- man/sjp.corr.Rd | 251 +++--- man/sjp.frq.Rd | 471 ++++++------ man/sjp.glm.Rd | 513 ++++++------- man/sjp.glmer.Rd | 673 ++++++++--------- man/sjp.glmm.Rd | 385 +++++----- man/sjp.gpt.Rd | 239 +++--- man/sjp.grpfrq.Rd | 448 +++++------ man/sjp.int.Rd | 5 man/sjp.kfold_cv.Rd | 109 +- man/sjp.likert.Rd | 363 ++++----- man/sjp.lm.Rd | 5 man/sjp.lmer.Rd | 757 ++++++++++---------- man/sjp.lmm.Rd | 379 ++++------ man/sjp.pca.Rd | 300 +++---- man/sjp.poly.Rd | 283 +++---- man/sjp.resid.Rd | 137 +-- man/sjp.scatter.Rd | 339 ++++---- man/sjp.setTheme.Rd | 509 ++++++------- man/sjp.stackfrq.Rd | 287 +++---- man/sjp.xtab.Rd | 415 +++++----- man/sjplot.Rd | 239 +++--- man/sjt.corr.Rd | 315 ++++---- man/sjt.df.Rd | 301 +++---- man/sjt.frq.Rd | 437 +++++------ man/sjt.glm.Rd | 678 +++++++++-------- man/sjt.glmer.Rd | 527 +++++++------ man/sjt.grpmean.Rd | 189 ++-- man/sjt.itemanalysis.Rd | 361 ++++----- man/sjt.lm.Rd | 773 ++++++++++---------- man/sjt.lmer.Rd | 607 ++++++++-------- man/sjt.mwu.Rd | 145 +-- man/sjt.pca.Rd | 288 +++---- man/sjt.stackfrq.Rd | 351 ++++----- man/sjt.xtab.Rd | 339 ++++---- man/view_df.Rd | 279 +++---- vignettes |only 83 files changed, 12970 insertions(+), 12611 deletions(-)
Title: R Interface to LibBi
Description: Provides a complete R interface to LibBi, a library for Bayesian inference (see <http://libbi.org> for more information). This includes functions for manipulating LibBi models, for reading and writing LibBi input/output files, for converting LibBi output to provide traces for use with the coda package, and for running LibBi from R.
Author: Pierre E. Jacob [aut],
Anthony Lee [ctb],
Lawrence M. Murray [ctb],
Sebastian Funk [aut, cre]
Maintainer: Sebastian Funk <sebastian.funk@lshtm.ac.uk>
Diff between rbi versions 0.6.0 dated 2016-12-23 and 0.7.0 dated 2017-02-06
rbi-0.6.0/rbi/R/bi_dim_values.R |only rbi-0.6.0/rbi/R/util_generate_seed.R |only rbi-0.6.0/rbi/R/util_get_traces.R |only rbi-0.6.0/rbi/R/util_log2normw.R |only rbi-0.6.0/rbi/R/util_merge_by_name.R |only rbi-0.6.0/rbi/R/util_nc_var_get_dim.R |only rbi-0.6.0/rbi/R/util_nc_var_has_dim.R |only rbi-0.6.0/rbi/man/bi_dim_values.Rd |only rbi-0.6.0/rbi/man/bi_init_file.Rd |only rbi-0.6.0/rbi/man/bi_model_clone.Rd |only rbi-0.6.0/rbi/man/bi_model_fix.Rd |only rbi-0.6.0/rbi/man/bi_model_get_lines.Rd |only rbi-0.6.0/rbi/man/bi_model_insert_lines.Rd |only rbi-0.6.0/rbi/man/bi_model_propose_prior.Rd |only rbi-0.6.0/rbi/man/bi_model_remove_lines.Rd |only rbi-0.6.0/rbi/man/bi_model_replace_all.Rd |only rbi-0.6.0/rbi/man/bi_model_set_name.Rd |only rbi-0.6.0/rbi/man/bi_model_update_lines.Rd |only rbi-0.6.0/rbi/man/bi_model_write.Rd |only rbi-0.6.0/rbi/man/generate_seed.Rd |only rbi-0.6.0/rbi/man/libbi_clone.Rd |only rbi-0.6.0/rbi/man/libbi_run.Rd |only rbi-0.6.0/rbi/man/log2normw.Rd |only rbi-0.6.0/rbi/man/merge_by_name.Rd |only rbi-0.6.0/rbi/man/tick-sub-tick.Rd |only rbi-0.6.0/rbi/man/tick-subset-tick.Rd |only rbi-0.7.0/rbi/DESCRIPTION | 12 rbi-0.7.0/rbi/MD5 | 138 +-- rbi-0.7.0/rbi/NAMESPACE | 57 + rbi-0.7.0/rbi/NEWS.md | 12 rbi-0.7.0/rbi/R/bi_contents.R | 2 rbi-0.7.0/rbi/R/bi_dim_len.R | 8 rbi-0.7.0/rbi/R/bi_file_summary.R | 3 rbi-0.7.0/rbi/R/bi_generate_dataset.R | 27 rbi-0.7.0/rbi/R/bi_model.R | 1082 ++++++++++++++------------ rbi-0.7.0/rbi/R/bi_open.R | 22 rbi-0.7.0/rbi/R/bi_read.R | 181 ++-- rbi-0.7.0/rbi/R/bi_write.R | 41 rbi-0.7.0/rbi/R/extract_sample.R |only rbi-0.7.0/rbi/R/get_traces.R |only rbi-0.7.0/rbi/R/libbi.R | 1112 +++++++++++++++++---------- rbi-0.7.0/rbi/R/read_var_input.R | 37 rbi-0.7.0/rbi/R/util_absolute_path.R | 2 rbi-0.7.0/rbi/R/util_nc_create_from_list.R | 56 - rbi-0.7.0/rbi/R/util_option_list.R | 4 rbi-0.7.0/rbi/R/util_option_string.R | 11 rbi-0.7.0/rbi/R/zzz.R |only rbi-0.7.0/rbi/README.md | 6 rbi-0.7.0/rbi/demo/PZ_PMMH.R | 25 rbi-0.7.0/rbi/demo/PZ_SMC2.R | 25 rbi-0.7.0/rbi/demo/PZ_filtering.R | 16 rbi-0.7.0/rbi/demo/PZ_generate_dataset.R | 13 rbi-0.7.0/rbi/inst/doc/introduction.Rmd.rsp | 143 ++- rbi-0.7.0/rbi/inst/doc/introduction.html | 381 +++++---- rbi-0.7.0/rbi/inst/example_dataset.nc |only rbi-0.7.0/rbi/inst/example_output.nc |binary rbi-0.7.0/rbi/man/Extract.bi_model.Rd |only rbi-0.7.0/rbi/man/absolute_path.Rd | 1 rbi-0.7.0/rbi/man/add_block.Rd |only rbi-0.7.0/rbi/man/add_output.Rd |only rbi-0.7.0/rbi/man/assert_output.Rd |only rbi-0.7.0/rbi/man/bi_file_summary.Rd | 2 rbi-0.7.0/rbi/man/bi_generate_dataset.Rd | 8 rbi-0.7.0/rbi/man/bi_model.Rd | 16 rbi-0.7.0/rbi/man/bi_open.Rd | 4 rbi-0.7.0/rbi/man/bi_read.Rd | 11 rbi-0.7.0/rbi/man/bi_write.Rd | 24 rbi-0.7.0/rbi/man/clean_model.Rd |only rbi-0.7.0/rbi/man/extract_sample.Rd |only rbi-0.7.0/rbi/man/filter.Rd |only rbi-0.7.0/rbi/man/find_block.Rd |only rbi-0.7.0/rbi/man/fix.Rd |only rbi-0.7.0/rbi/man/get_block.Rd |only rbi-0.7.0/rbi/man/get_name.Rd |only rbi-0.7.0/rbi/man/get_traces.Rd | 10 rbi-0.7.0/rbi/man/insert_lines.Rd |only rbi-0.7.0/rbi/man/is_empty.Rd |only rbi-0.7.0/rbi/man/libbi.Rd | 40 rbi-0.7.0/rbi/man/netcdf_create_from_list.Rd | 8 rbi-0.7.0/rbi/man/obs_to_noise.Rd |only rbi-0.7.0/rbi/man/optimise.Rd |only rbi-0.7.0/rbi/man/predict.Rd |only rbi-0.7.0/rbi/man/print.Rd |only rbi-0.7.0/rbi/man/propose_prior.Rd |only rbi-0.7.0/rbi/man/read_libbi.Rd |only rbi-0.7.0/rbi/man/read_var_input.Rd | 2 rbi-0.7.0/rbi/man/remove_lines.Rd |only rbi-0.7.0/rbi/man/replace_all.Rd |only rbi-0.7.0/rbi/man/rewrite.Rd |only rbi-0.7.0/rbi/man/run.Rd |only rbi-0.7.0/rbi/man/sample.Rd |only rbi-0.7.0/rbi/man/save_libbi.Rd |only rbi-0.7.0/rbi/man/set_name.Rd |only rbi-0.7.0/rbi/man/summary.Rd |only rbi-0.7.0/rbi/man/var_names.Rd |only rbi-0.7.0/rbi/man/write_file.Rd |only rbi-0.7.0/rbi/tests |only rbi-0.7.0/rbi/vignettes/introduction.Rmd.rsp | 143 ++- 98 files changed, 2216 insertions(+), 1469 deletions(-)
Title: Growing Self-Organizing Maps
Description: A growing self-organizing map (GrowingSOM, GSOM) is a growing variant of the popular self-organizing map (SOM).
A growing self-organizing map is a type of artificial neural network (ANN) that is trained using unsupervised learning to produce a
two-dimensional representation of the input space of the training samples, called a map.
Author: Hunziker Alex [aut, cre]
Maintainer: Hunziker Alex <alexhunziker@sunrise.ch>
Diff between GrowingSOM versions 0.1 dated 2017-02-03 and 0.1.1 dated 2017-02-06
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- build/partial.rdb |binary src/trainloop.c | 14 +++++++------- src/trainloop_xy.c | 14 +++++++------- 5 files changed, 23 insertions(+), 23 deletions(-)
Title: Zero-Inflated Models for Count Time Series with Excess Zeros
Description: Fits observation-driven and parameter-driven models for zero-inflated time series.
Author: Ming Yang, Gideon K. D. Zamba, and Joseph E. Cavanaugh
Maintainer: Ming Yang <mingyang@biostatstudio.com>
Diff between ZIM versions 1.0.2 dated 2014-10-06 and 1.0.3 dated 2017-02-06
ZIM-1.0.2/ZIM/README.md |only ZIM-1.0.2/ZIM/build |only ZIM-1.0.2/ZIM/inst |only ZIM-1.0.2/ZIM/vignettes |only ZIM-1.0.3/ZIM/DESCRIPTION | 14 +++++----- ZIM-1.0.3/ZIM/MD5 | 52 ++++++++++++++++---------------------- ZIM-1.0.3/ZIM/NAMESPACE | 10 +++++-- ZIM-1.0.3/ZIM/R/ZIM-package.R | 10 +++---- ZIM-1.0.3/ZIM/R/dzim.R | 2 - ZIM-1.0.3/ZIM/R/misc.R | 1 ZIM-1.0.3/ZIM/R/zim.R | 2 - ZIM-1.0.3/ZIM/man/ZIM-package.Rd | 42 +++++++++++++++++++----------- ZIM-1.0.3/ZIM/man/bshift.Rd | 11 +++++--- ZIM-1.0.3/ZIM/man/dpqr-zinb.Rd | 36 +++++++++++++++----------- ZIM-1.0.3/ZIM/man/dpqr-zip.Rd | 34 ++++++++++++++---------- ZIM-1.0.3/ZIM/man/dzim.Rd | 34 +++++++++++++----------- ZIM-1.0.3/ZIM/man/dzim.control.Rd | 43 ++++++++++++++++--------------- ZIM-1.0.3/ZIM/man/dzim.filter.Rd | 29 ++++++++++----------- ZIM-1.0.3/ZIM/man/dzim.fit.Rd | 26 ++++++++----------- ZIM-1.0.3/ZIM/man/dzim.plot.Rd | 16 +++++++---- ZIM-1.0.3/ZIM/man/dzim.sim.Rd | 29 +++++++++------------ ZIM-1.0.3/ZIM/man/dzim.smooth.Rd | 29 ++++++++++----------- ZIM-1.0.3/ZIM/man/injury.Rd | 10 ++++--- ZIM-1.0.3/ZIM/man/pvalue.Rd | 7 ++--- ZIM-1.0.3/ZIM/man/syph.Rd | 9 +++--- ZIM-1.0.3/ZIM/man/zim.Rd | 30 +++++++++++++-------- ZIM-1.0.3/ZIM/man/zim.control.Rd | 26 ++++++++++--------- ZIM-1.0.3/ZIM/man/zim.fit.Rd | 23 +++++++++------- 28 files changed, 284 insertions(+), 241 deletions(-)
Title: Convert Data from and to 'GeoJSON' or 'TopoJSON'
Description: Convert data to 'GeoJSON' or 'TopoJSON' from various R classes,
including vectors, lists, data frames, shape files, and spatial classes.
geojsonio does not aim to replace packages like 'sp', 'rgdal', 'rgeos',
but rather aims to be a high level client to simplify conversions of data
from and to 'GeoJSON' and 'TopoJSON'.
Author: Scott Chamberlain [aut, cre],
Andy Teucher [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between geojsonio versions 0.3.0 dated 2017-01-27 and 0.3.2 dated 2017-02-06
DESCRIPTION | 6 MD5 | 12 NEWS.md | 9 R/crs_convert.R | 2 tests/testthat/test-crs_convert.R | 320 +++++++++---------- tests/testthat/test-geojson_write.R | 12 tests/testthat/test-sf_classes.R | 605 ++++++++++++++++++------------------ 7 files changed, 492 insertions(+), 474 deletions(-)
Title: Best Subset GLM
Description: Best subset glm using AIC, BIC, EBIC, BICq or Cross-Validation. For the normal case, the 'leaps' is used. Otherwise, a slower exhaustive search. The 'xtable' package is needed for vignette 'SimExperimentBICq.Rnw' accompanying this package.
Author: A.I. McLeod and Changjiang Xu
Maintainer: A.I. McLeod <aimcleod@uwo.ca>
Diff between bestglm versions 0.34 dated 2014-03-02 and 0.35 dated 2017-02-06
DESCRIPTION | 11 +- MD5 | 42 ++++++---- NAMESPACE | 17 +--- NEWS | 5 + R/dgrid.R |only R/vifx.R |only build/vignette.rds |binary data/hivif.rda |only data/mcdonald.rda |only data/rubber.rda |only man/AirQuality.Rd | 104 +++++++++++++------------- man/CVDH.Rd | 127 ++++++++++++++++---------------- man/CVHTF.Rd | 8 +- man/CVd.Rd | 20 +++-- man/Detroit.Rd | 192 +++++++++++++++++++++++++------------------------ man/Fires.Rd | 19 +++- man/LOOCV.Rd | 142 ++++++++++++++++++------------------ man/MontesinhoFires.Rd | 15 ++- man/dgrid.Rd |only man/hivif.Rd |only man/manpower.Rd | 85 +++++++++++---------- man/mcdonald.Rd |only man/oneSdRule.Rd | 74 +++++++++--------- man/rubber.Rd |only man/vifx.Rd |only man/znuclear.Rd | 129 +++++++++++++++++--------------- man/zprostate.Rd | 129 +++++++++++++++----------------- 27 files changed, 584 insertions(+), 535 deletions(-)
Title: Bivariate Angular Mixture Models
Description: Fit (using Bayesian methods) and simulate mixtures of univariate and bivariate angular distributions.
Author: Saptarshi Chakraborty,
Samuel W.K. Wong
Maintainer: Saptarshi Chakraborty <c7rishi@ufl.edu>
Diff between BAMBI versions 1.0.1 dated 2017-01-04 and 1.1.0 dated 2017-02-06
DESCRIPTION | 8 ++-- MD5 | 38 ++++++++++---------- NAMESPACE | 2 + R/all_model_select.R | 27 +++++++++++++- R/all_postprodn_fns.R | 75 +++++++++++++++++++++++++++++++++-------- R/all_vm_fns.R | 24 ++++--------- R/all_vmcos_fns.R | 24 ++++--------- R/all_vmsin_fns.R | 26 ++++++-------- R/all_wnorm2_fns.R | 24 ++++--------- R/all_wnorm_fns.R | 24 ++++--------- man/AIC.angmcmc.Rd | 7 ++- man/bestmodel.Rd |only man/d_fitted.Rd | 2 - man/fit_stepwise_bivariate.Rd | 2 - man/fit_stepwise_univariate.Rd | 2 - man/fit_vmcosmix.Rd | 11 +++--- man/fit_vmmix.Rd | 13 +++---- man/fit_vmsinmix.Rd | 14 ++++--- man/fit_wnorm2mix.Rd | 12 +++--- man/fit_wnormmix.Rd | 14 ++++--- man/logLik.angmcmc.Rd |only 21 files changed, 205 insertions(+), 144 deletions(-)