Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data
processing, see <http://spark.apache.org>. This package supports connecting to
local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end,
and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut, cre],
Kevin Ushey [aut],
JJ Allaire [aut],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between sparklyr versions 0.5.1 dated 2016-12-19 and 0.5.2 dated 2017-02-16
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/livy_connection.R | 2 +- R/spark_shell.R | 6 +++--- README.md | 24 +++++++++++++----------- 5 files changed, 24 insertions(+), 22 deletions(-)
Title: Rho for Inter Rater Reliability
Description: Rho is used to test the generalization of inter rater reliability
(IRR) statistics. Calculating rho starts by generating a large number of
simulated, fully-coded data sets: a sizable collection of hypothetical
populations, all of which have a kappa value below a given threshold -- which
indicates unacceptable agreement. Then kappa is calculated on a sample from
each of those sets in the collection to see if it is equal to or higher than
the kappa in then real sample. If less than five percent of the distribution
of samples from the simulated data sets is greater than actual observed kappa,
the null hypothesis is rejected and one can conclude that if the two raters had
coded the rest of the data, we would have acceptable agreement (kappa above the
threshold).
Author: Brendan Eagan [aut],
Brad Rogers [aut],
Rebecca Pozen [aut],
Cody L Marquart [cre, aut],
David Williamson Shaffer [aut]
Maintainer: Cody L Marquart <cody.marquart@wisc.edu>
Diff between rhoR versions 1.0.0 dated 2016-10-18 and 1.1.0.0 dated 2017-02-16
DESCRIPTION | 17 +++++++++-------- MD5 | 6 +++--- R/getHandSet.R | 41 ++++++++++++++++------------------------- R/getTestSet.R | 1 + 4 files changed, 29 insertions(+), 36 deletions(-)
Title: Exact Tests and Confidence Intervals for 2x2 Tables
Description: Calculates conditional exact tests (Fisher's exact test, Blaker's exact test, or exact McNemar's test) and unconditional exact tests (including score-based tests on differences in proportions, ratios of proportions, and odds ratios, and Boshcloo's test) with appropriate matching confidence intervals, and provides power and sample size calculations. Also gives melded confidence intervals for the binomial case.
Author: Michael P. Fay, Sally A. Hunsberger
Maintainer: Michael P. Fay <mfay@niaid.nih.gov>
Diff between exact2x2 versions 1.4.1 dated 2015-02-26 and 1.5.2 dated 2017-02-16
exact2x2-1.4.1/exact2x2/tests/tests.R |only exact2x2-1.5.2/exact2x2/ChangeLog | 5 exact2x2-1.5.2/exact2x2/DESCRIPTION | 17 exact2x2-1.5.2/exact2x2/MD5 | 83 exact2x2-1.5.2/exact2x2/NAMESPACE | 27 exact2x2-1.5.2/exact2x2/R/binomMeld.test.R | 867 +++++++--- exact2x2-1.5.2/exact2x2/R/boschloo.R |only exact2x2-1.5.2/exact2x2/R/exact2x2.R | 110 - exact2x2-1.5.2/exact2x2/R/fisher.exact.R | 2 exact2x2-1.5.2/exact2x2/R/fisherCalcMidp.R |only exact2x2-1.5.2/exact2x2/R/mcnemar.exact.calc.R | 6 exact2x2-1.5.2/exact2x2/R/powerUncondExact2x2.R |only exact2x2-1.5.2/exact2x2/R/rankPlots.R |only exact2x2-1.5.2/exact2x2/R/uncondExact2x2.R |only exact2x2-1.5.2/exact2x2/R/uncondPower2x2.R |only exact2x2-1.5.2/exact2x2/build/vignette.rds |binary exact2x2-1.5.2/exact2x2/inst/CITATION | 8 exact2x2-1.5.2/exact2x2/inst/doc/exact2x2.R | 10 exact2x2-1.5.2/exact2x2/inst/doc/exact2x2.Rnw | 1 exact2x2-1.5.2/exact2x2/inst/doc/exact2x2.pdf |binary exact2x2-1.5.2/exact2x2/inst/doc/exact2x2Validation.Rnw |only exact2x2-1.5.2/exact2x2/inst/doc/exact2x2Validation.pdf |only exact2x2-1.5.2/exact2x2/inst/doc/exactMcNemar.R | 8 exact2x2-1.5.2/exact2x2/inst/doc/exactMcNemar.Rnw | 54 exact2x2-1.5.2/exact2x2/inst/doc/exactMcNemar.pdf |binary exact2x2-1.5.2/exact2x2/inst/doc/midpAdjustment.R |only exact2x2-1.5.2/exact2x2/inst/doc/midpAdjustment.Rnw |only exact2x2-1.5.2/exact2x2/inst/doc/midpAdjustment.pdf |only exact2x2-1.5.2/exact2x2/inst/doc/unconditionalExact2x2Tests.R |only exact2x2-1.5.2/exact2x2/inst/doc/unconditionalExact2x2Tests.Rnw |only exact2x2-1.5.2/exact2x2/inst/doc/unconditionalExact2x2Tests.pdf |only exact2x2-1.5.2/exact2x2/inst/slowTests |only exact2x2-1.5.2/exact2x2/man/binomMeldtest.Rd | 21 exact2x2-1.5.2/exact2x2/man/boschloo.Rd |only exact2x2-1.5.2/exact2x2/man/calcTall.Rd |only exact2x2-1.5.2/exact2x2/man/constrMLE.Rd |only exact2x2-1.5.2/exact2x2/man/exact2x2-internal.Rd | 21 exact2x2-1.5.2/exact2x2/man/exact2x2-package.Rd | 17 exact2x2-1.5.2/exact2x2/man/exact2x2.Rd | 19 exact2x2-1.5.2/exact2x2/man/pickTstat.Rd |only exact2x2-1.5.2/exact2x2/man/plotT.Rd |only exact2x2-1.5.2/exact2x2/man/power2grid.Rd |only exact2x2-1.5.2/exact2x2/man/power2x2.Rd | 2 exact2x2-1.5.2/exact2x2/man/ucControl.Rd |only exact2x2-1.5.2/exact2x2/man/uncondExact2x2-internal.Rd |only exact2x2-1.5.2/exact2x2/man/uncondExact2x2.Rd |only exact2x2-1.5.2/exact2x2/man/uncondPower2x2.Rd |only exact2x2-1.5.2/exact2x2/man/unirootGrid.Rd |only exact2x2-1.5.2/exact2x2/tests/testthat |only exact2x2-1.5.2/exact2x2/tests/testthat.R |only exact2x2-1.5.2/exact2x2/vignettes/exact2x2.Rnw | 1 exact2x2-1.5.2/exact2x2/vignettes/exact2x2Validation.Rnw |only exact2x2-1.5.2/exact2x2/vignettes/exactMcNemar.Rnw | 54 exact2x2-1.5.2/exact2x2/vignettes/midpAdjustment.Rnw |only exact2x2-1.5.2/exact2x2/vignettes/unconditionalExact2x2Tests.Rnw |only 55 files changed, 987 insertions(+), 346 deletions(-)
Title: Visualizing Asymmetric Data
Description: Models and methods for the visualization for asymmetric data. A matrix is asymmetric if the number of rows equals the number of columns, and these rows and columns refer to the same set of objects. An example is a student migration table, where the rows correspond to the countries of origin of the students and the columns to the destination countries. The slide-vector model, a heat map, and the decomposition of asymmetry are provided for the analysis of these tables.
Author: Berrie Zielman
Maintainer: Berrie Zielman <berrie.zielman@gmail.com>
Diff between asymmetry versions 1.1.3 dated 2016-12-04 and 1.2 dated 2017-02-16
DESCRIPTION | 10 +++++----- MD5 | 27 ++++++++++++++++----------- NAMESPACE | 4 +++- R/asymscal.R |only build/partial.rdb |binary data/asymscalexample.RData |only inst/doc/asymmetry.R | 9 ++++----- inst/doc/asymmetry.Rmd | 29 ++++++++++++++++++----------- inst/doc/asymmetry.html | 38 ++++++++++++++++---------------------- inst/doc/index.html |only man/asymscal.Rd |only man/asymscalexample.rd |only man/decomposition.Rd | 2 +- man/slidevector.Rd | 5 +++-- man/studentmigration.Rd | 4 ++-- man/summary.slidevector.Rd | 2 +- vignettes/asymmetry.Rmd | 29 ++++++++++++++++++----------- 17 files changed, 87 insertions(+), 72 deletions(-)
Title: Interface to the Uber API
Description: The Uber API provides a programmatic way to interact with the Uber
international online transportation network. This package enables access to
the Uber API from within R. Specifically it is possible to: extract information
about a user's account, find out about nearby Uber vehicles, get estimates for
rides, book or cancel a ride. See <https://developer.uber.com/> for more
information.
Author: Andrew Collier [aut, cre],
Arthur Wu [aut],
Jonathan Carroll [ctb]
Maintainer: Andrew Collier <andrew@exegetic.biz>
Diff between ubeR versions 0.1.3 dated 2016-10-22 and 0.1.4 dated 2017-02-16
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat/test_utils.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Format Significance Summaries for Reports
Description: Succinctly format significance summaries of
various models and tests. The main purpose is unified reporting and planning
of experimental results, working around issue such as the difficulty of
extracting model summary facts (such as with 'lm'/'glm'). This package also
includes empirical tests, such as bootstrap estimates.
Author: John Mount, Nina Zumel
Maintainer: John Mount <jmount@win-vector.com>
Diff between sigr versions 0.1.3 dated 2017-01-16 and 0.1.4 dated 2017-02-16
DESCRIPTION | 8 ++--- MD5 | 34 +++++++++++++++--------- NAMESPACE | 9 ++++++ NEWS.md | 9 +++++- R/CorTest.R | 51 +++++++++++++++++++++++++++++++++--- R/EmpiricalFns.R | 33 +++++++++++++++-------- R/FisherTest.R | 54 ++++++++++++++++++++++++++++++++++++--- R/TTest.R | 54 +++++++++++++++++++++++++++++++++++---- R/sigr.R |only README.md | 10 +++++-- inst/doc/sigrFormatting.html | 6 ++-- man/resampleScoreModelPair.Rd | 11 +++++-- man/sigr.Rd |only man/wrapCorTest.Rd | 19 +++---------- man/wrapCorTest.data.frame.Rd |only man/wrapCorTest.htest.Rd |only man/wrapFisherTest.Rd | 19 +++---------- man/wrapFisherTest.data.frame.Rd |only man/wrapFisherTest.htest.Rd |only man/wrapTTest.Rd | 20 +++----------- man/wrapTTest.data.frame.Rd |only man/wrapTTest.htest.Rd |only 22 files changed, 241 insertions(+), 96 deletions(-)
Title: Shape Constrained Additive Models
Description: Routines for generalized additive modelling under shape
constraints on the component functions of the linear predictor
(Pya and Wood, 2015) <doi:10.1007/s11222-013-9448-7>.
Models can contain multiple shape constrained (univariate
and/or bivariate) and unconstrained terms. The routines of gam()
in package 'mgcv' are used for setting up the model matrix,
printing and plotting the results. Penalized likelihood
maximization based on Newton-Raphson method is used to fit a
model with multiple smoothing parameter selection by GCV or
UBRE/AIC.
Author: Natalya Pya <nat.pya@gmail.com>
Maintainer: Natalya Pya <nat.pya@gmail.com>
Diff between scam versions 1.2-0 dated 2016-06-02 and 1.2-1 dated 2017-02-16
scam-1.2-0/scam/R/uni.smooth.const.R |only scam-1.2-1/scam/ChangeLog | 9 +++++++ scam-1.2-1/scam/DESCRIPTION | 11 +++++---- scam-1.2-1/scam/MD5 | 20 +++++++++-------- scam-1.2-1/scam/NAMESPACE | 4 +++ scam-1.2-1/scam/R/bfgs.R | 14 +++++------ scam-1.2-1/scam/R/estimate.scam.R | 2 - scam-1.2-1/scam/R/plot.r | 11 +++++---- scam-1.2-1/scam/R/scam.r | 2 - scam-1.2-1/scam/R/uni.smooth.const-with-po.r |only scam-1.2-1/scam/man/Predict.matrix.mpi.smooth.Rd | 2 + scam-1.2-1/scam/man/linear.functional.terms.Rd |only scam-1.2-1/scam/man/smooth.construct.po.smooth.spec.Rd |only 13 files changed, 48 insertions(+), 27 deletions(-)
Title: Interface to the iDigBio Data API
Description: An interface to iDigBio's search API that allows downloading
specimen records. Searches are returned as a data.frame. Other functions
such as the metadata end points return lists of information. iDigBio is a US
project focused on digitizing and serving museum specimen collections on the
web. See <https://www.idigbio.org> for information on iDigBio.
Author: Francois Michonneau [aut, cph],
Matthew Collins [aut, cre],
Scott Chamberlain [ctb],
Kevin Love [ctb],
Hem Nalini Morzaria-Luna [ctb]
Maintainer: Matthew Collins <mcollins@acis.ufl.edu>
Diff between ridigbio versions 0.3.4 dated 2016-10-26 and 0.3.5 dated 2017-02-16
DESCRIPTION | 10 +++--- MD5 | 52 ++++++++++++++++----------------- R/base.R | 5 +-- R/idig_meta_fields.R | 2 - R/idig_search.R | 2 - man/build_field_lists.Rd | 1 man/idig_GET.Rd | 1 man/idig_POST.Rd | 1 man/idig_build_attrib.Rd | 1 man/idig_check.Rd | 1 man/idig_check_error.Rd | 1 man/idig_count_media.Rd | 1 man/idig_count_records.Rd | 1 man/idig_meta_fields.Rd | 1 man/idig_parse.Rd | 1 man/idig_search.Rd | 1 man/idig_search_media.Rd | 1 man/idig_search_records.Rd | 1 man/idig_top_media.Rd | 1 man/idig_top_records.Rd | 1 man/idig_url.Rd | 1 man/idig_validate.Rd | 1 man/idig_version.Rd | 1 man/idig_view_media.Rd | 1 man/idig_view_records.Rd | 1 man/ridigbio.Rd | 2 - tests/testthat/test-idig_meta_fields.R | 4 ++ 27 files changed, 41 insertions(+), 56 deletions(-)
More information about ProliferativeIndex at CRAN
Permanent link
Title: A Toolbox for Writing Pretty Papers and Reports
Description: A toolbox for writing 'knitr', 'Sweave' or other 'LaTeX'- or 'markdown'-based
reports and to prettify the output of various estimated models.
Author: Benjamin Hofner, with contributions by many others (see inst/CONTRIBUTIONS)
Maintainer: Benjamin Hofner <benjamin.hofner@pei.de>
Diff between papeR versions 1.0-1 dated 2016-04-08 and 1.0-2 dated 2017-02-16
ChangeLog | 28 DESCRIPTION | 14 MD5 | 88 +- NAMESPACE | 101 +- R/helpers.R | 375 ++++------ R/labels.R | 248 +++--- R/plot.R | 212 ++--- R/prettify.R | 1006 +++++++++++++-------------- R/summarize.R | 1418 +++++++++++++++++++-------------------- R/toLatex.R | 484 ++++++------- README.md | 82 +- build/vignette.rds |binary inst/CITATION | 38 - inst/CONTRIBUTIONS | 152 ++-- inst/COPYRIGHTS | 26 inst/NEWS.Rd | 406 +++++------ inst/doc/papeR_introduction.R | 196 ++--- inst/doc/papeR_introduction.Rmd | 654 ++++++++--------- inst/doc/papeR_introduction.html | 1143 +++++++++++++++---------------- inst/doc/papeR_with_latex.R | 96 +- inst/doc/papeR_with_latex.Rnw | 290 +++---- inst/doc/papeR_with_latex.pdf |binary man/Anova.lme.Rd | 86 +- man/confint.Rd | 111 +-- man/get_options.Rd | 82 +- man/labels.data.frame.Rd | 514 +++++++------- man/latex_table_cont.Rd | 198 ++--- man/latex_table_fac.Rd | 184 ++--- man/papeR-package.Rd | 70 - man/prettify.Rd | 644 ++++++++--------- man/summarize.Rd | 302 ++++---- man/summarize_factor.Rd | 270 +++---- man/summarize_numeric.Rd | 276 +++---- man/toLatex.Rd | 228 +++--- man/xtable_summary.Rd | 372 +++++----- tests/regtest-plot.R | 66 - tests/regtest-summarize.R | 94 +- tests/testthat.R | 8 tests/testthat/test-helpers.R | 304 ++++---- tests/testthat/test-labels.R | 234 +++--- tests/testthat/test-prettify.R | 754 ++++++++++---------- tests/testthat/test-summarize.R | 402 +++++------ tests/testthat/test-toLatex.R | 234 +++--- vignettes/papeR_introduction.Rmd | 654 ++++++++--------- vignettes/papeR_with_latex.Rnw | 290 +++---- 45 files changed, 6741 insertions(+), 6693 deletions(-)
Title: C++ ODE Solvers Compiled on-Demand
Description: Wraps the Boost odeint library for integration of differential
equations.
Author: Timothy H. Keitt
Maintainer: Timothy H. Keitt <tkeitt@gmail.com>
Diff between odeintr versions 1.3 dated 2015-05-17 and 1.7.0 dated 2017-02-16
DESCRIPTION | 18 +-- MD5 | 39 ++++--- NAMESPACE | 3 R/RcppExports.R | 2 R/odeintr.R | 123 +++++++++++++++++++++++-- R/utils.R | 12 +- README.md |only inst/include/utils.h |only inst/templates/compile_implicit_template.cpp | 7 - inst/templates/compile_sys_openmp_template.cpp |only inst/templates/compile_sys_r_obs_template.cpp | 14 +- inst/templates/compile_sys_template.cpp | 17 +-- man/compile_sys.Rd | 17 +-- man/compile_sys_openmp.Rd |only man/implicit.Rd | 11 +- man/integrate_sys.Rd | 9 - man/odeintr_package.Rd | 9 - man/set-opt.Rd | 11 +- src/Makevars | 3 src/RcppExports.cpp | 18 +-- src/init.c |only src/odeintr.cpp | 2 tests |only 23 files changed, 217 insertions(+), 98 deletions(-)
Title: Solve Systems of Nonlinear Equations
Description: Solve a system of nonlinear equations using a Broyden or a Newton method
with a choice of global strategies such as line search and trust region.
There are options for using a numerical or user supplied Jacobian,
for specifying a banded numerical Jacobian and for allowing
a singular or ill-conditioned Jacobian.
Author: Berend Hasselman
Maintainer: Berend Hasselman <bhh@xs4all.nl>
Diff between nleqslv versions 3.0.3 dated 2016-08-08 and 3.1 dated 2017-02-16
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NAMESPACE | 2 +- NEWS | 4 ++++ R/nleqslv.R | 4 ++-- src/init.c |only 6 files changed, 16 insertions(+), 11 deletions(-)
Title: Improved Score Tests for Generalized Linear Models
Description: A set of functions to obtain modified score test for generalized linear models.
Author: Antonio Hermes M. da Silva-Junior [aut, cre], Damiao N. da Silva [aut], Silvia L. P. Ferrari [ctb]
Maintainer: Antonio Hermes M. da Silva-Junior <hermes@ccet.ufrn.br>
Diff between mdscore versions 0.1-2 dated 2014-10-17 and 0.1-3 dated 2017-02-16
DESCRIPTION | 10 +-- MD5 | 8 +- NAMESPACE | 3 R/addtests.r | 181 ++++++++--------------------------------------------------- R/mdscore.r | 13 +++- 5 files changed, 47 insertions(+), 168 deletions(-)
Title: Easy Interface to the Statistical Disclosure Control Package
'sdcTable'
Description: The main function, ProtectTable(), performs table suppression according to a
frequency rule with a data set as the only required input. Within this function,
protectTable() or protectLinkedTables() in package 'sdcTable' is called. Lists of
level-hierarchy (parameter 'dimList') and other required input to these functions are
created automatically.
Author: Øyvind Langsrud
Maintainer: Øyvind Langsrud <oyl@ssb.no>
Diff between easySdcTable versions 0.1 dated 2016-12-30 and 0.2.1 dated 2017-02-16
DESCRIPTION | 16 ++++++++++---- MD5 | 36 ++++++++++++++++++++------------- NAMESPACE | 2 + R/IncProgress.R |only R/ProtectTable.R | 54 ++++++++++++++++++++++++++++++++++++-------------- R/ProtectTable1.R | 8 ++++++- R/RbindAllwithNames.R |only build |only data/z1.RData |binary data/z1micro.RData |binary data/z1w.RData |binary data/z2.RData |binary data/z2w.RData |binary data/z3.RData |binary data/z3w.RData |binary data/z3wb.RData |binary inst |only man/IncDefault.Rd |only man/ProtectTable.Rd | 9 ++++++-- man/ProtectTable1.Rd | 4 ++- vignettes |only 21 files changed, 91 insertions(+), 38 deletions(-)
Title: Forecasting Mortality, Fertility, Migration and Population Data
Description: Functions for demographic analysis including lifetable
calculations; Lee-Carter modelling; functional data analysis of
mortality rates, fertility rates, net migration numbers; and
stochastic population forecasting.
Author: Rob J Hyndman with contributions from Heather Booth, Leonie Tickle and John Maindonald.
Maintainer: Rob J Hyndman <Rob.Hyndman@monash.edu>
Diff between demography versions 1.18 dated 2014-09-15 and 1.19 dated 2017-02-16
demography-1.18/demography/man/median.Rd |only demography-1.19/demography/DESCRIPTION | 12 demography-1.19/demography/MD5 | 107 - demography-1.19/demography/NAMESPACE | 112 - demography-1.19/demography/R/attach.R | 16 demography-1.19/demography/R/coherent.R | 279 ++-- demography-1.19/demography/R/demogdata.R | 1170 ++++++++--------- demography-1.19/demography/R/fdm.R | 948 +++++++------- demography-1.19/demography/R/fertility.R | 86 - demography-1.19/demography/R/hmd.R | 196 +- demography-1.19/demography/R/lca.R | 984 +++++++------- demography-1.19/demography/R/lifetable.R | 1183 +++++++++--------- demography-1.19/demography/R/monotonic.R | 16 demography-1.19/demography/R/robust.R | 600 ++++----- demography-1.19/demography/R/simulate.R | 172 +- demography-1.19/demography/R/smooth.R | 24 demography-1.19/demography/R/update.R | 240 +-- demography-1.19/demography/README.md | 52 demography-1.19/demography/data/datalist | 6 demography-1.19/demography/man/ausfert.Rd | 60 demography-1.19/demography/man/coherentfdm.Rd | 74 - demography-1.19/demography/man/combine.demogdata.Rd | 82 - demography-1.19/demography/man/compare.demogdata.Rd | 114 - demography-1.19/demography/man/demogdata.Rd | 72 - demography-1.19/demography/man/demography-package.Rd | 34 demography-1.19/demography/man/extract.ages.Rd | 48 demography-1.19/demography/man/extract.years.Rd | 44 demography-1.19/demography/man/fdm.Rd | 120 - demography-1.19/demography/man/forecast.fdm.Rd | 96 - demography-1.19/demography/man/forecast.fdmpr.Rd | 68 - demography-1.19/demography/man/forecast.lca.Rd | 86 - demography-1.19/demography/man/fr.mort.Rd | 72 - demography-1.19/demography/man/hmd.Rd | 206 +-- demography-1.19/demography/man/isfe.Rd | 82 - demography-1.19/demography/man/lca.Rd | 178 +- demography-1.19/demography/man/life.expectancy.Rd | 116 - demography-1.19/demography/man/lifetable.Rd | 162 +- demography-1.19/demography/man/mean.demogdata.Rd | 70 - demography-1.19/demography/man/migration.Rd | 74 - demography-1.19/demography/man/models.Rd | 76 - demography-1.19/demography/man/monotonic.Rd | 92 - demography-1.19/demography/man/plot.demogdata.Rd | 106 - demography-1.19/demography/man/plot.errorfdm.Rd | 50 demography-1.19/demography/man/plot.fmforecast.Rd | 84 - demography-1.19/demography/man/plot.lifetable.Rd | 74 - demography-1.19/demography/man/pop.sim.Rd | 94 - demography-1.19/demography/man/read.demogdata.Rd | 106 - demography-1.19/demography/man/residuals.fmm.Rd | 74 - demography-1.19/demography/man/set.upperage.Rd | 44 demography-1.19/demography/man/sex.ratio.Rd | 42 demography-1.19/demography/man/simulate.fmforecast.Rd | 80 - demography-1.19/demography/man/smooth.demogdata.Rd | 116 - demography-1.19/demography/man/summary.fdm.Rd | 62 demography-1.19/demography/man/tfr.Rd | 66 - demography-1.19/demography/man/update.Rd | 94 - 55 files changed, 4704 insertions(+), 4617 deletions(-)
Title: Local Polynomial Regression of State Dependent Covariates in
State-Space Models
Description: Facilitates local polynomial regression for state dependent covariates in state-space models. The functionality can also be used from 'C++' based model builder tools such as 'Rcpp'/'inline', 'TMB', or 'JAGS'.
Author: Christoffer Moesgaard Albertsen [aut, cre]
Maintainer: Christoffer Moesgaard Albertsen <cmoe@aqua.dtu.dk>
Diff between covafillr versions 0.3.0 dated 2016-05-12 and 0.4.0 dated 2017-02-16
DESCRIPTION | 12 - MD5 | 72 +++++---- NAMESPACE | 8 + NEWS | 12 + R/covafill.R | 54 +++---- R/covatree.R | 6 R/kde.R |only R/statcovafill.R |only inst/examples/ggplot |only inst/examples/rcode |only inst/examples/tmbtest/tmbtest.R | 73 +++++++++- inst/examples/tmbtest/tmbtest.cpp | 1 inst/include/covafill/Core | 1 inst/include/covafill/TMB | 2 inst/include/covafill/dox/Doxyfile | 2 inst/include/covafill/dox/mainpage.md | 2 inst/include/covafill/src/Core/covafill.hpp | 2 inst/include/covafill/src/Core/covafill_constructors.hpp | 8 - inst/include/covafill/src/Core/covafill_operators.hpp | 50 +++++- inst/include/covafill/src/Core/covafill_privateFunctions.hpp | 5 inst/include/covafill/src/Interpolate/bicubicInterpolation.hpp | 10 - inst/include/covafill/src/Interpolate/cubicInterpolation.hpp | 4 inst/include/covafill/src/Interpolate/ncubicInterpolation.hpp | 6 inst/include/covafill/src/Interpolate/tricubicInterpolation.hpp | 10 - inst/include/covafill/src/Interpolate/unicubicInterpolation.hpp | 10 - inst/include/covafill/src/STAN |only inst/include/covafill/src/TMB/atomic.hpp | 9 - inst/include/covafill/src/TMB/atomic_Tree.hpp | 4 inst/include/covafill/src/TMB/covafill_extra_constructors.hpp | 2 inst/include/covafill/src/Tree/covanode.hpp | 4 inst/include/covafill/src/Tree/covanode_constructors.hpp | 8 - inst/include/covafill/src/Tree/covatree.hpp | 4 inst/include/covafill/src/Tree/covatree_constructors.hpp | 7 man/covafill-class.Rd | 8 - man/covatree-class.Rd | 5 man/kde.Rd |only man/stat_covafill.Rd |only man/suggestBandwith.Rd |only src/Makevars.in | 2 src/headers/fill.hpp | 10 - src/main.cpp | 34 ++++ 41 files changed, 315 insertions(+), 132 deletions(-)
Title: Optimal and Fast Univariate Clustering
Description: A fast dynamic programming algorithm for optimal univariate
clustering. Minimizing the sum of squares of within-cluster distances, the
algorithm guarantees optimality and reproducibility. Its advantage over
heuristic clustering algorithms in efficiency and accuracy is increasingly
pronounced as the number of clusters k increases. With optional weights, the
algorithm can also optimally segment time series and perform peak calling. An
auxiliary function generates histograms that are adaptive to patterns in data.
This package provides a powerful alternative to heuristic methods for
univariate data analysis.
Author: Joe Song [aut, cre], Haizhou Wang [aut]
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between Ckmeans.1d.dp versions 4.0.0 dated 2017-02-15 and 4.0.1 dated 2017-02-16
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 7 +++++++ inst/doc/Ckmeans.1d.dp.html | 16 ++++++++-------- inst/doc/ahist.html | 12 ++++++------ man/Ckmeans.1d.dp-package.Rd | 2 +- man/Ckmeans.1d.dp.Rd | 4 ++-- src/Ckmeans.1d.dp_main.cpp | 4 ++-- src/fill_SMAWK.cpp | 2 +- 9 files changed, 39 insertions(+), 32 deletions(-)
Title: Bayesian Evaluation of Variant Involvement in Mendelian
Disorders
Description: A fast integrative genetic association test for rare diseases.
Author: Daniel Greene
Maintainer: Daniel Greene <dg333@cam.ac.uk>
Diff between BeviMed versions 2.2 dated 2016-07-05 and 3.0 dated 2017-02-16
BeviMed-2.2/BeviMed/inst/scripts/bevimed-vcf.R |only BeviMed-2.2/BeviMed/src/RcppExports.h |only BeviMed-3.0/BeviMed/DESCRIPTION | 10 BeviMed-3.0/BeviMed/MD5 | 72 +- BeviMed-3.0/BeviMed/NAMESPACE | 5 BeviMed-3.0/BeviMed/NEWS.md |only BeviMed-3.0/BeviMed/R/RcppExports.R |only BeviMed-3.0/BeviMed/R/convenience.R |only BeviMed-3.0/BeviMed/R/functions.R | 440 +++++------------ BeviMed-3.0/BeviMed/R/generics.R | 28 - BeviMed-3.0/BeviMed/build/vignette.rds |binary BeviMed-3.0/BeviMed/inst/doc/Intro.R | 16 BeviMed-3.0/BeviMed/inst/doc/Intro.Rmd | 37 - BeviMed-3.0/BeviMed/inst/doc/Intro.html | 103 +-- BeviMed-3.0/BeviMed/inst/doc/vcf.R |only BeviMed-3.0/BeviMed/inst/doc/vcf.Rmd |only BeviMed-3.0/BeviMed/inst/doc/vcf.html |only BeviMed-3.0/BeviMed/inst/scripts/vcf.R |only BeviMed-3.0/BeviMed/man/bevimed.Rd | 29 - BeviMed-3.0/BeviMed/man/call_cpp.Rd | 14 BeviMed-3.0/BeviMed/man/conditional_prob_pathogenic.Rd | 4 BeviMed-3.0/BeviMed/man/exact_evidence.Rd | 2 BeviMed-3.0/BeviMed/man/expected_explained.Rd |only BeviMed-3.0/BeviMed/man/explaining_variants.Rd |only BeviMed-3.0/BeviMed/man/extract_expected_explained.Rd |only BeviMed-3.0/BeviMed/man/extract_explaining_variants.Rd |only BeviMed-3.0/BeviMed/man/extract_gamma1_evidence.Rd |only BeviMed-3.0/BeviMed/man/gamma0_evidence.Rd | 6 BeviMed-3.0/BeviMed/man/gamma1_evidence.Rd | 4 BeviMed-3.0/BeviMed/man/gamma1_prob.Rd | 2 BeviMed-3.0/BeviMed/man/log_BF.Rd | 6 BeviMed-3.0/BeviMed/man/lower_bound_gamma1_evidence.Rd | 14 BeviMed-3.0/BeviMed/man/print.BeviMed.Rd | 2 BeviMed-3.0/BeviMed/man/print.BeviMed_summary.Rd | 2 BeviMed-3.0/BeviMed/man/prob_association.Rd | 15 BeviMed-3.0/BeviMed/man/prob_pathogenic.Rd | 15 BeviMed-3.0/BeviMed/man/region_association_evidence.Rd | 8 BeviMed-3.0/BeviMed/man/stop_chain.Rd | 10 BeviMed-3.0/BeviMed/man/summary.BeviMed.Rd | 4 BeviMed-3.0/BeviMed/src/BeviMed_init.c |only BeviMed-3.0/BeviMed/src/RcppExports.cpp | 112 +--- BeviMed-3.0/BeviMed/src/sampling.cpp | 255 +++++---- BeviMed-3.0/BeviMed/src/sampling.h | 26 - BeviMed-3.0/BeviMed/vignettes/Intro.Rmd | 37 - BeviMed-3.0/BeviMed/vignettes/vcf.Rmd |only 45 files changed, 547 insertions(+), 731 deletions(-)
Title: Data Visualization Tools for Statistical Analysis Results
Description: Unified plotting tools for statistics commonly used, such as GLM,
time series, PCA families, clustering and survival analysis. The package offers
a single plotting interface for these analysis results and plots in a unified
style using 'ggplot2'.
Author: Masaaki Horikoshi [aut, cre],
Yuan Tang [aut, cph]
Maintainer: Masaaki Horikoshi <sinhrks@gmail.com>
Diff between ggfortify versions 0.4.0 dated 2017-02-03 and 0.4.1 dated 2017-02-16
ggfortify-0.4.0/ggfortify/tests/testthat/Rplots.pdf |only ggfortify-0.4.1/ggfortify/DESCRIPTION | 8 ++--- ggfortify-0.4.1/ggfortify/MD5 | 21 +++++++-------- ggfortify-0.4.1/ggfortify/NEWS | 7 +++++ ggfortify-0.4.1/ggfortify/R/fortify_performance.R | 2 - ggfortify-0.4.1/ggfortify/R/fortify_surv.R | 11 ++++--- ggfortify-0.4.1/ggfortify/inst/doc/basics.html | 2 - ggfortify-0.4.1/ggfortify/inst/doc/plot_surv.html | 6 ++-- ggfortify-0.4.1/ggfortify/man/autoplot.survfit.Rd | 2 - ggfortify-0.4.1/ggfortify/tests/testthat/test-forecast.R | 9 +++++- ggfortify-0.4.1/ggfortify/tests/testthat/test-stats.R | 9 ++++++ ggfortify-0.4.1/ggfortify/tests/testthat/test-surv.R | 12 +++++++- 12 files changed, 61 insertions(+), 28 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-27 0.3.3
2015-08-13 0.3-2
Title: The YUIMA Project Package for SDEs
Description: Simulation and Inference for SDEs and Other Stochastic Processes.
Author: YUIMA Project Team
Maintainer: Stefano M. Iacus <stefano.iacus@unimi.it>
Diff between yuima versions 1.4.7 dated 2017-01-18 and 1.5.9 dated 2017-02-16
DESCRIPTION | 10 MD5 | 39 +- NAMESPACE | 487 ++++++++++++++++---------------- NEWS | 5 R/AuxMethodforPPR.R | 476 +++++++++++++++++++++++++------ R/CPoint.R | 46 +-- R/lambdaPPR.R |only R/rng.R | 2 R/sim.euler.R | 759 +++++++++++++++++++++++++-------------------------- R/simulateForPpr.R | 522 ++++++++++++++++++++++------------- R/toLatex.R | 96 +++++- R/yuima.R | 44 ++ R/yuima.law.r | 4 R/yuima.model.R | 4 inst/ybook |only man/Intensity.PPR.Rd |only man/simulate.Rd | 716 ++++++++++++++++++++++++------------------------ man/toLatex.Rd | 2 man/ybook.Rd |only src/euler.c |only 20 files changed, 1870 insertions(+), 1342 deletions(-)
Title: Edit 'GeoJSON' and Spatial Objects
Description: Edit and simplify 'geojson' and 'Spatial' objects.
This is wrapper around the 'mapshaper' 'javascript' library
<https://github.com/mbloch/mapshaper/> to perform topologically-aware
polygon simplification, as well as other operations such as clipping,
erasing, dissolving, and converting 'multi-part' to 'single-part' geometries.
It relies on the 'geojsonio' package for working with 'geojson' objects,
and the 'sp' and 'rgdal' packages for working with 'Spatial' objects.
Author: Andy Teucher [aut, cre],
Kenton Russell [aut] (JavaScript support),
Matthew Bloch [cph] (mapshaper Javascript library)
Maintainer: Andy Teucher <andy.teucher@gmail.com>
Diff between rmapshaper versions 0.1.0 dated 2016-06-29 and 0.2.0 dated 2017-02-16
rmapshaper-0.1.0/rmapshaper/R/onLoad.R |only rmapshaper-0.1.0/rmapshaper/R/zzz.R |only rmapshaper-0.2.0/rmapshaper/DESCRIPTION | 27 rmapshaper-0.2.0/rmapshaper/MD5 | 70 rmapshaper-0.2.0/rmapshaper/NAMESPACE | 1 rmapshaper-0.2.0/rmapshaper/NEWS.md | 13 rmapshaper-0.2.0/rmapshaper/R/clip_erase.R | 138 rmapshaper-0.2.0/rmapshaper/R/drop_null_geometries.R | 2 rmapshaper-0.2.0/rmapshaper/R/points.R | 3 rmapshaper-0.2.0/rmapshaper/R/rmapshaper.R | 6 rmapshaper-0.2.0/rmapshaper/R/simplify.R | 173 rmapshaper-0.2.0/rmapshaper/R/utils.R |only rmapshaper-0.2.0/rmapshaper/README.md | 27 rmapshaper-0.2.0/rmapshaper/build/vignette.rds |binary rmapshaper-0.2.0/rmapshaper/inst/doc/rmapshaper.html | 27 rmapshaper-0.2.0/rmapshaper/inst/mapshaper/README.md | 23 rmapshaper-0.2.0/rmapshaper/inst/mapshaper/mapshaper-browserify.js |18299 +++++++--- rmapshaper-0.2.0/rmapshaper/man/apply_mapshaper_commands.Rd | 3 rmapshaper-0.2.0/rmapshaper/man/drop_null_geometries.Rd | 1 rmapshaper-0.2.0/rmapshaper/man/ms_clip.Rd | 6 rmapshaper-0.2.0/rmapshaper/man/ms_dissolve.Rd | 1 rmapshaper-0.2.0/rmapshaper/man/ms_erase.Rd | 8 rmapshaper-0.2.0/rmapshaper/man/ms_explode.Rd | 1 rmapshaper-0.2.0/rmapshaper/man/ms_filter_fields.Rd | 1 rmapshaper-0.2.0/rmapshaper/man/ms_filter_islands.Rd | 1 rmapshaper-0.2.0/rmapshaper/man/ms_innerlines.Rd | 1 rmapshaper-0.2.0/rmapshaper/man/ms_lines.Rd | 1 rmapshaper-0.2.0/rmapshaper/man/ms_points.Rd | 4 rmapshaper-0.2.0/rmapshaper/man/ms_simplify.Rd | 70 rmapshaper-0.2.0/rmapshaper/man/rmapshaper.Rd | 2 rmapshaper-0.2.0/rmapshaper/tests/testthat/test-clip_erase.R | 9 rmapshaper-0.2.0/rmapshaper/tests/testthat/test-dissolve.R | 16 rmapshaper-0.2.0/rmapshaper/tests/testthat/test-explode.R | 4 rmapshaper-0.2.0/rmapshaper/tests/testthat/test-filter_fields.R | 2 rmapshaper-0.2.0/rmapshaper/tests/testthat/test-innerlines.R | 2 rmapshaper-0.2.0/rmapshaper/tests/testthat/test-lines.R | 2 rmapshaper-0.2.0/rmapshaper/tests/testthat/test-simplify.R | 50 rmapshaper-0.2.0/rmapshaper/tests/testthat/test-utils.R |only 38 files changed, 14281 insertions(+), 4713 deletions(-)
Title: A Graphical User Interface for Microarray Data Analysis and
Annotation
Description: Provides a Graphical User Interface for Analysing DNA Microarray Data. It performs functional enrichment on genes of interest, identifies gene symbols and also builds co-expression network.
Author: Dhammapal Bharne, Vaibhav Vindal
Maintainer: Dhammapal Bharne <dhammapalb@uohyd.ac.in>
Diff between maGUI versions 2.0 dated 2017-01-11 and 2.1 dated 2017-02-16
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/maGUI.R | 8 ++++---- man/maGUI-package.Rd | 4 ++-- 4 files changed, 13 insertions(+), 13 deletions(-)
Title: Calculate Generalized Eigenvalues, the Generalized Schur
Decomposition and the Generalized Singular Value Decomposition
of a Matrix Pair with Lapack
Description: Functions to compute generalized eigenvalues and eigenvectors,
the generalized Schur decomposition and
the generalized Singular Value Decomposition of a matrix pair,
using Lapack routines.
Author: Berend Hasselman [cre, aut],
Lapack authors [aut, cph]
Maintainer: Berend Hasselman <bhh@xs4all.nl>
Diff between geigen versions 1.9.2 dated 2016-09-05 and 2.0 dated 2017-02-16
DESCRIPTION | 8 - MD5 | 33 ++--- NAMESPACE | 2 NEWS | 8 + R/geigen.R | 44 +++---- R/gqz.R | 22 +-- R/gsvd.R | 16 +- man/geigen.Rd | 2 man/gqz.Rd | 2 man/gsvd.Rd | 2 src/dggsvd3.f | 34 ++--- src/dggsvp3.f | 34 ++--- src/init.c |only src/zggesall.f | 316 +++++++++++++++++++++++++++---------------------------- src/zggevall.f | 82 +++++++------- src/zggevsdeps.f | 152 +++++++++++++------------- src/zggsvdall.f | 288 +++++++++++++++++++++++++------------------------- src/zhegall.f | 108 +++++++++--------- 18 files changed, 580 insertions(+), 573 deletions(-)
Title: Flexible Cluster-Weighted Modeling
Description: Allows for maximum likelihood fitting of cluster-weighted models, a class of mixtures of regression models with random covariates.
Author: Mazza A., Punzo A., Ingrassia S.
Maintainer: Angelo Mazza <a.mazza@unict.it>
Diff between flexCWM versions 1.5 dated 2015-03-25 and 1.7 dated 2017-02-16
DESCRIPTION | 10 - MD5 | 24 +-- NAMESPACE | 6 R/Extractors.R | 21 ++- R/PostInit.R | 1 R/PostProbs.R | 11 - R/code.R | 326 +++++++++++++++++++++++++------------------------ R/cwm.R | 16 +- R/inv.gauss.R | 4 R/plot.R | 20 +-- man/cwm.Rd | 11 - man/flexCWM-package.Rd | 4 man/plot.Rd | 4 13 files changed, 246 insertions(+), 212 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: Determines Species Probabilities Based on Functional Traits
Description: For determining species probabilities that satisfy a given
functional trait profile. Restoring resilient ecosystems requires a
flexible framework for selecting assemblages that are based on the functional
traits of species. However, current trait-based models have been biased toward
algorithms that can only select species by optimising specific trait values,
and could not elegantly accommodate the common desire among restoration ecologists
to produce functionally diverse assemblages. We have solved this problem by
applying a non-linear optimisation algorithm that optimises Rao’s Q, a closed-form
functional diversity index that incorporates species abundances, subject to other
linear constraints. This framework generalises previous models that could only
optimise the entropy of the community, and can optimise both functional diversity
and entropy simultaneously.
Author: Daniel Laughlin [aut, cre]
Maintainer: Daniel Laughlin <d.laughlin@waikato.ac.nz>
Diff between Select versions 1.0 dated 2017-01-26 and 1.1 dated 2017-02-16
DESCRIPTION | 12 ++-- MD5 | 10 +-- R/plotprobs.R | 39 ++++++++++---- R/select.R | 150 +++++++++++++++++++++++++++++++++++++------------------ man/plotprobs.Rd | 19 ++++-- man/select.Rd | 74 +++++++++++++++------------ 6 files changed, 196 insertions(+), 108 deletions(-)
Title: Detect Marine Heat Waves and Marine Cold Spells
Description: Given a time series of daily temperatures, the package provides tools
to detect extreme thermal events, including marine heat waves, and to
calculate the exceedances above or below specified threshold values.
It outputs the properties of all detected events and exceedances.
Author: Albertus J. Smit [aut, cre] (R implementation.),
Eric C. J. Oliver [aut] (The brain behind the Python implementation.),
Robert W. Schlegel [ctb] (Graphical and data summaries.)
Maintainer: Albertus J. Smit <albertus.smit@gmail.com>
Diff between RmarineHeatWaves versions 0.14.1 dated 2017-01-11 and 0.15.1 dated 2017-02-16
RmarineHeatWaves-0.14.1/RmarineHeatWaves/R/exceedence.R |only RmarineHeatWaves-0.14.1/RmarineHeatWaves/man/exceedence.Rd |only RmarineHeatWaves-0.15.1/RmarineHeatWaves/DESCRIPTION | 14 - RmarineHeatWaves-0.15.1/RmarineHeatWaves/MD5 | 41 +-- RmarineHeatWaves-0.15.1/RmarineHeatWaves/NAMESPACE | 6 RmarineHeatWaves-0.15.1/RmarineHeatWaves/NEWS.md |only RmarineHeatWaves-0.15.1/RmarineHeatWaves/R/RmarineHeatWaves-package.r | 6 RmarineHeatWaves-0.15.1/RmarineHeatWaves/R/RmarineHeatWaves.R | 2 RmarineHeatWaves-0.15.1/RmarineHeatWaves/R/exceedance.R |only RmarineHeatWaves-0.15.1/RmarineHeatWaves/R/geom_flame.R |only RmarineHeatWaves-0.15.1/RmarineHeatWaves/R/geom_lolli.R |only RmarineHeatWaves-0.15.1/RmarineHeatWaves/R/graphFunctions.R | 84 +++++- RmarineHeatWaves-0.15.1/RmarineHeatWaves/README.md | 126 ++++++++-- RmarineHeatWaves-0.15.1/RmarineHeatWaves/inst/doc/gridded-event-detection.html | 4 RmarineHeatWaves-0.15.1/RmarineHeatWaves/man/RmarineHeatWaves.Rd | 15 - RmarineHeatWaves-0.15.1/RmarineHeatWaves/man/block_average.Rd | 7 RmarineHeatWaves-0.15.1/RmarineHeatWaves/man/detect.Rd | 7 RmarineHeatWaves-0.15.1/RmarineHeatWaves/man/event_line.Rd | 16 - RmarineHeatWaves-0.15.1/RmarineHeatWaves/man/exceedance.Rd |only RmarineHeatWaves-0.15.1/RmarineHeatWaves/man/geom_flame.Rd |only RmarineHeatWaves-0.15.1/RmarineHeatWaves/man/geom_lolli.Rd |only RmarineHeatWaves-0.15.1/RmarineHeatWaves/man/lolli_plot.Rd | 5 RmarineHeatWaves-0.15.1/RmarineHeatWaves/man/make_whole.Rd | 1 RmarineHeatWaves-0.15.1/RmarineHeatWaves/man/sst_Med.Rd | 1 RmarineHeatWaves-0.15.1/RmarineHeatWaves/man/sst_NW_Atl.Rd | 1 RmarineHeatWaves-0.15.1/RmarineHeatWaves/man/sst_WA.Rd | 1 26 files changed, 242 insertions(+), 95 deletions(-)
More information about RmarineHeatWaves at CRAN
Permanent link
Title: Elementary Probability on Finite Sample Spaces
Description:
A framework for performing elementary probability
calculations on finite sample spaces, which may be represented by data frames
or lists. Functionality includes setting up sample spaces, counting tools,
defining probability spaces, performing set algebra, calculating probability
and conditional probability, tools for simulation and checking the law of
large numbers, adding random variables, and finding marginal distributions.
Characteristic functions for all base R distributions are included.
Author: G. Jay Kerns [aut, cre, cph]
Maintainer: G. Jay Kerns <gkerns@ysu.edu>
Diff between prob versions 0.9-5 dated 2013-12-11 and 1.0-0 dated 2017-02-16
DESCRIPTION | 17 ++--- MD5 | 25 ++++---- NAMESPACE | 152 +++++++++++++++++++++++++------------------------ R/genData.R |only build/vignette.rds |binary inst/doc/charfunc.Rnw | 3 inst/doc/charfunc.pdf |binary inst/doc/prob.R | 2 inst/doc/prob.pdf |binary man/CharFunc.Rd | 3 man/gen2wayTable.Rd |only man/genIndepTable.Rd |only man/genLogRegData.Rd |only man/genXdata.Rd |only man/prob-package.Rd | 79 ++++++++++++------------- vignettes/charfunc.Rnw | 3 16 files changed, 147 insertions(+), 137 deletions(-)
Title: Power/Sample Size Calculation for Mediation Analysis
Description: Functions to
calculate power and sample size for testing
(1) mediation effects;
(2) the slope in a simple linear regression;
(3) odds ratio in a simple logistic regression;
(4) mean change for longitudinal study with 2 time points;
(5) interaction effect in 2-way ANOVA; and
(6) the slope in a simple Poisson regression.
Author: Weiliang Qiu <stwxq@channing.harvard.edu>
Maintainer: Weiliang Qiu <stwxq@channing.harvard.edu>
Diff between powerMediation versions 0.2.6 dated 2017-01-27 and 0.2.7 dated 2017-02-16
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 5 +++++ man/powerLongFull.Rd | 10 +++++----- man/ssLongFull.Rd | 4 ++-- 5 files changed, 20 insertions(+), 15 deletions(-)
More information about powerMediation at CRAN
Permanent link
Title: D3 JavaScript Network Graphs from R
Description: Creates 'D3' 'JavaScript' network, tree, dendrogram, and Sankey
graphs from 'R'.
Author: J.J. Allaire [aut],
Peter Ellis [ctb],
Christopher Gandrud [aut, cre],
Kevin Kuo [ctb],
B.W. Lewis [ctb],
Jonathan Owen [ctb],
Kenton Russell [aut],
Jennifer Rogers [ctb],
Charles Sese [ctb],
CJ Yetman [aut]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between networkD3 versions 0.2.13 dated 2016-08-11 and 0.3 dated 2017-02-16
networkD3-0.2.13/networkD3/NEWS |only networkD3-0.2.13/networkD3/inst/htmlwidgets/lib/d3-3.5.2 |only networkD3-0.3/networkD3/DESCRIPTION | 40 +-- networkD3-0.3/networkD3/MD5 | 79 +++--- networkD3-0.3/networkD3/NEWS.md |only networkD3-0.3/networkD3/R/forceNetwork.R | 2 networkD3-0.3/networkD3/R/sankeyNetwork.R | 64 ++--- networkD3-0.3/networkD3/README.md | 4 networkD3-0.3/networkD3/inst/examples/shiny/server.R | 2 networkD3-0.3/networkD3/inst/examples/shiny/ui.R | 4 networkD3-0.3/networkD3/inst/htmlwidgets/chordNetwork.js | 33 +- networkD3-0.3/networkD3/inst/htmlwidgets/chordNetwork.yaml | 4 networkD3-0.3/networkD3/inst/htmlwidgets/dendroNetwork.js | 121 ++++------ networkD3-0.3/networkD3/inst/htmlwidgets/dendroNetwork.yaml | 4 networkD3-0.3/networkD3/inst/htmlwidgets/diagonalNetwork.js | 63 ++--- networkD3-0.3/networkD3/inst/htmlwidgets/diagonalNetwork.yaml | 4 networkD3-0.3/networkD3/inst/htmlwidgets/forceNetwork.js | 63 ++--- networkD3-0.3/networkD3/inst/htmlwidgets/forceNetwork.yaml | 4 networkD3-0.3/networkD3/inst/htmlwidgets/lib/d3-4.5.0 |only networkD3-0.3/networkD3/inst/htmlwidgets/lib/sankey.js | 7 networkD3-0.3/networkD3/inst/htmlwidgets/radialNetwork.js | 54 ++-- networkD3-0.3/networkD3/inst/htmlwidgets/radialNetwork.yaml | 4 networkD3-0.3/networkD3/inst/htmlwidgets/sankeyNetwork.js | 39 +-- networkD3-0.3/networkD3/inst/htmlwidgets/sankeyNetwork.yaml | 4 networkD3-0.3/networkD3/inst/htmlwidgets/simpleNetwork.js | 61 ++--- networkD3-0.3/networkD3/inst/htmlwidgets/simpleNetwork.yaml | 4 networkD3-0.3/networkD3/man/JS.Rd | 1 networkD3-0.3/networkD3/man/MisLinks.Rd | 1 networkD3-0.3/networkD3/man/MisNodes.Rd | 1 networkD3-0.3/networkD3/man/SchoolsJournals.Rd | 1 networkD3-0.3/networkD3/man/as.radialNetwork.Rd | 1 networkD3-0.3/networkD3/man/chordNetwork.Rd | 1 networkD3-0.3/networkD3/man/dendroNetwork.Rd | 1 networkD3-0.3/networkD3/man/diagonalNetwork.Rd | 1 networkD3-0.3/networkD3/man/forceNetwork.Rd | 6 networkD3-0.3/networkD3/man/igraph_to_networkD3.Rd | 1 networkD3-0.3/networkD3/man/networkD3-package.Rd | 3 networkD3-0.3/networkD3/man/networkD3-shiny.Rd | 17 - networkD3-0.3/networkD3/man/radialNetwork.Rd | 1 networkD3-0.3/networkD3/man/sankeyNetwork.Rd | 15 - networkD3-0.3/networkD3/man/saveNetwork.Rd | 1 networkD3-0.3/networkD3/man/simpleNetwork.Rd | 1 42 files changed, 361 insertions(+), 356 deletions(-)
Title: MODIS Subsetting Tools
Description: Provides several functions for downloading, storing and processing
subsets of MODIS Land Processes data as a batch process.
Author: Sean Tuck, Helen Phillips
Maintainer: Sean Tuck <seanltuck@gmail.com>
Diff between MODISTools versions 0.95.0 dated 2016-08-02 and 0.95.1 dated 2017-02-16
DESCRIPTION | 8 +++---- MD5 | 44 +++++++++++++++++++++--------------------- R/GetBands.R | 9 +++----- R/GetDates.R | 8 +++---- R/GetProducts.R | 8 +++---- R/GetSubset.R | 8 +++---- R/daacmodis.R |only inst/CITATION | 2 - inst/doc/UsingMODISTools.Rnw | 4 +-- inst/doc/UsingMODISTools.pdf |binary man/GetBands.Rd | 8 +------ man/GetDates.Rd | 8 +------ man/GetProducts.Rd | 8 +------ man/GetSubset.Rd | 8 +------ man/MODISGrid.Rd | 6 ++--- man/MODISSubsets.Rd | 8 +------ man/MODISSummaries.Rd | 8 +------ man/MODISTools-package.Rd | 6 ----- man/MODISTransects.Rd | 8 +------ man/QualityCheck.Rd | 8 +------ man/WritePRJ.Rd | 4 +-- man/daacmodis.Rd |only tests/Test.R | 8 +++---- vignettes/UsingMODISTools.Rnw | 4 +-- 24 files changed, 74 insertions(+), 109 deletions(-)
Title: Test Metric and Null Model Statistical Performance
Description: Explore the behavior and performance of phylogenetic metrics and
null models.
Author: Eliot Miller, Chris Trisos & Damien Farine
Maintainer: Eliot Miller <eliot.isaac@gmail.com>
Diff between metricTester versions 1.3.0 dated 2016-07-27 and 1.3.2 dated 2017-02-16
metricTester-1.3.0/metricTester/R/regionalNull.R |only metricTester-1.3.0/metricTester/man/regionalNull.Rd |only metricTester-1.3.2/metricTester/DESCRIPTION | 8 ++-- metricTester-1.3.2/metricTester/MD5 | 28 +++++++++-------- metricTester-1.3.2/metricTester/NAMESPACE | 4 +- metricTester-1.3.2/metricTester/NEWS.md | 8 ++++ metricTester-1.3.2/metricTester/R/defineNulls.R | 13 ++++++- metricTester-1.3.2/metricTester/R/makeRoadMap.R |only metricTester-1.3.2/metricTester/R/metricsNnulls.R | 7 +++- metricTester-1.3.2/metricTester/R/newRegionalNull.R |only metricTester-1.3.2/metricTester/R/oldRegionalNull.R |only metricTester-1.3.2/metricTester/R/summaries.R | 5 +++ metricTester-1.3.2/metricTester/R/synthComm.R | 14 ++++---- metricTester-1.3.2/metricTester/man/makeRoadMap.Rd |only metricTester-1.3.2/metricTester/man/metricsNnulls.Rd | 7 +++- metricTester-1.3.2/metricTester/man/newRegionalNull.Rd |only metricTester-1.3.2/metricTester/man/oldRegionalNull.Rd |only metricTester-1.3.2/metricTester/man/summaries.Rd | 5 +++ metricTester-1.3.2/metricTester/man/synthComm.Rd | 10 +++--- 19 files changed, 75 insertions(+), 34 deletions(-)
Title: Regularization Paths for Lasso or Elastic-Net Penalized Huber
Loss Regression and Quantile Regression
Description: Efficient algorithms for fitting regularization paths for lasso or elastic-net penalized regression models with Huber loss, quantile loss or squared loss.
Author: Congrui Yi
Maintainer: Congrui Yi <congrui-yi@uiowa.edu>
Diff between hqreg versions 1.3 dated 2016-05-23 and 1.4 dated 2017-02-16
DESCRIPTION | 8 +- MD5 | 39 +++++++------ NAMESPACE | 4 - NEWS | 32 +++++++---- R/cv.hqreg.R | 28 ++++----- R/hqreg.R | 30 +++++----- R/hqreg_raw.R |only R/plot.cv.hqreg.R | 4 - R/plot.hqreg.R | 13 +++- R/predict.hqreg.R | 46 ++++++++++------ README.md |only man/cv.hqreg.Rd | 24 ++++++-- man/hqreg-package.Rd | 11 +++ man/hqreg.Rd | 12 +++- man/hqreg_raw.Rd |only man/plot.cv.hqreg.Rd | 6 ++ man/plot.hqreg.Rd | 6 ++ man/predict.cv.hqreg.Rd | 8 ++ man/predict.hqreg.Rd | 6 ++ src/data_process.c | 20 ++++--- src/hqreg.c | 135 ++++++++++++++++++++++++------------------------ src/init.c | 4 - 22 files changed, 260 insertions(+), 176 deletions(-)
Title: The Analysis of Variance with EMS
Description: Provides the analysis of variance table including the expected mean squares (EMS) for various types of experimental design. When some variables are random effects or we use special experimental design such as nested design, repeated-measures design, or split-plot design, it is not easy to find the appropriate test, especially denominator for F-statistic which depends on EMS.
Author: Eun-Kyung Lee, Hye-Min Choe
Maintainer: Eun-Kyung Lee <lee.eunk@gmail.com>
Diff between EMSaov versions 2.1 dated 2017-02-01 and 2.2 dated 2017-02-16
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/EMSanova.R | 21 +++++++++------------ 3 files changed, 15 insertions(+), 18 deletions(-)
Title: Fitting the copCAR Regression Model for Discrete Areal Data
Description: Provides tools for fitting the copCAR (Hughes, 2015)
<DOI:10.1080/10618600.2014.948178> regression model for discrete
areal data. Three types of estimation are supported (continuous
extension, composite marginal likelihood, and distributional transform),
for three types of outcomes (Bernoulli, negative binomial, and Poisson).
Author: Emily Goren <emily.goren@gmail.com> and John Hughes
<jphughesjr@gmail.com>
Maintainer: John Hughes <jphughesjr@gmail.com>
Diff between copCAR versions 1.0-3 dated 2016-12-14 and 2.0 dated 2017-02-16
copCAR-1.0-3/copCAR/src/inverse.cpp |only copCAR-1.0-3/copCAR/src/inverse.h |only copCAR-2.0/copCAR/DESCRIPTION | 20 copCAR-2.0/copCAR/MD5 | 26 copCAR-2.0/copCAR/NAMESPACE | 40 copCAR-2.0/copCAR/R/RcppExports.R |only copCAR-2.0/copCAR/R/copCAR.R | 1453 ++++++++++++++++-------------- copCAR-2.0/copCAR/R/zzz.R | 5 copCAR-2.0/copCAR/man/adjacency.matrix.Rd | 8 copCAR-2.0/copCAR/man/copCAR.Rd | 198 ++-- copCAR-2.0/copCAR/man/negbinomial.Rd |only copCAR-2.0/copCAR/man/rcopCAR.Rd | 52 - copCAR-2.0/copCAR/man/residuals.copCAR.Rd |only copCAR-2.0/copCAR/man/summary.copCAR.Rd | 13 copCAR-2.0/copCAR/man/vcov.copCAR.Rd | 13 copCAR-2.0/copCAR/src/buildM.cpp | 1 copCAR-2.0/copCAR/src/init.c |only 17 files changed, 1011 insertions(+), 818 deletions(-)