Title: Weaning Age Reconstruction with Nitrogen Isotope Analysis
Description: This estimates precise weaning ages
for a given skeletal population
by analyzing the stable nitrogen isotope ratios of them.
Bone collagen turnover rates estimated anew and
the approximate Bayesian computation (ABC)
were adopted in this package.
Author: Takumi Tsutaya
Maintainer: Takumi Tsutaya <tsutayatakumi@gmail.com>
Diff between WARN versions 1.2-1 dated 2016-06-26 and 1.2-2 dated 2017-02-21
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 4 ++++ R/warn.R | 15 +++++++++++++++ man/WARN-package.Rd | 4 ++-- 6 files changed, 34 insertions(+), 11 deletions(-)
Title: Time-Course Gene Set Analysis for RNA-Seq Data
Description: Gene set analysis of longitudinal RNA-seq data with variance component
score test accounting for data heteroscedasticity through precision weights.
Method is detailed in: Agniel D, Hejblum BP (2016) Variance component score test
for time-course gene set analysis of longitudinal RNA-seq data <arXiv:1605.02351>.
Author: Denis Agniel [aut],
Boris P. Hejblum [aut, cre]
Maintainer: Boris P. Hejblum <boris.hejblum@u-bordeaux.fr>
Diff between tcgsaseq versions 1.3.1 dated 2016-11-24 and 1.4.1 dated 2017-02-21
tcgsaseq-1.3.1/tcgsaseq/R/tcgsaseq_internal.R |only tcgsaseq-1.4.1/tcgsaseq/DESCRIPTION | 14 tcgsaseq-1.4.1/tcgsaseq/LICENSE | 678 +++++------ tcgsaseq-1.4.1/tcgsaseq/MD5 | 60 tcgsaseq-1.4.1/tcgsaseq/NEWS | 3 tcgsaseq-1.4.1/tcgsaseq/R/TcGSAseq-package.R | 4 tcgsaseq-1.4.1/tcgsaseq/R/TcGSAseq_internal.R |only tcgsaseq-1.4.1/tcgsaseq/R/compute_sim_voomlike_genewise.R | 438 +++---- tcgsaseq-1.4.1/tcgsaseq/R/data_sim_voomlike.R | 302 ++-- tcgsaseq-1.4.1/tcgsaseq/R/qAbundanceDist.R | 76 - tcgsaseq-1.4.1/tcgsaseq/R/tcgsa_seq.R | 4 tcgsaseq-1.4.1/tcgsaseq/R/vc_score.R | 25 tcgsaseq-1.4.1/tcgsaseq/R/vc_test_asym.R | 259 ++-- tcgsaseq-1.4.1/tcgsaseq/R/vc_test_perm.R | 31 tcgsaseq-1.4.1/tcgsaseq/man/PBT_gmt.Rd | 3 tcgsaseq-1.4.1/tcgsaseq/man/baduel_5gs.Rd | 3 tcgsaseq-1.4.1/tcgsaseq/man/compute_sim_voomlike.Rd | 1 tcgsaseq-1.4.1/tcgsaseq/man/compute_sim_voomlike_genewise.Rd | 1 tcgsaseq-1.4.1/tcgsaseq/man/data_sim_voomlike.Rd | 1 tcgsaseq-1.4.1/tcgsaseq/man/deseq_fn.Rd | 1 tcgsaseq-1.4.1/tcgsaseq/man/grapes-pow-grapes.Rd | 3 tcgsaseq-1.4.1/tcgsaseq/man/nb_sim_fn.Rd | 1 tcgsaseq-1.4.1/tcgsaseq/man/nonlin_sim_fn.Rd | 5 tcgsaseq-1.4.1/tcgsaseq/man/qAbundanceDist.Rd | 1 tcgsaseq-1.4.1/tcgsaseq/man/sp_weights.Rd | 1 tcgsaseq-1.4.1/tcgsaseq/man/tcgsa_seq.Rd | 1 tcgsaseq-1.4.1/tcgsaseq/man/tcgsaseq.Rd | 13 tcgsaseq-1.4.1/tcgsaseq/man/vc_score.Rd | 1 tcgsaseq-1.4.1/tcgsaseq/man/vc_score_h.Rd | 1 tcgsaseq-1.4.1/tcgsaseq/man/vc_test_asym.Rd | 1 tcgsaseq-1.4.1/tcgsaseq/man/vc_test_perm.Rd | 1 tcgsaseq-1.4.1/tcgsaseq/man/voom_weights.Rd | 1 32 files changed, 979 insertions(+), 955 deletions(-)
Title: Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and
Destruction Rate Modelling
Description: Distributions that are typically used for exposure rating in
general insurance, in particular to price reinsurance contracts.
The vignettes show code snippets to fit the distribution to
empirical data.
Author: Giorgio Spedicato [aut, cre],
Christophe Dutang [aut],
Markus Gesmann [ctb]
Maintainer: Giorgio Spedicato <spedicato_giorgio@yahoo.it>
Diff between mbbefd versions 0.8.7 dated 2016-12-30 and 0.8.8 dated 2017-02-21
ChangeLog | 2 ++ DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- NAMESPACE | 2 +- NEWS | 4 ++-- build/vignette.rds |binary inst/doc/Introduction_to_mbbefd.pdf |binary man/mbbefd-package.Rd | 4 ++-- src/init.c |only 9 files changed, 18 insertions(+), 15 deletions(-)
Title: Fitting the copCAR Regression Model for Discrete Areal Data
Description: Provides tools for fitting the copCAR (Hughes, 2015)
<DOI:10.1080/10618600.2014.948178> regression model for discrete
areal data. Three types of estimation are supported (continuous
extension, composite marginal likelihood, and distributional transform),
for three types of outcomes (Bernoulli, negative binomial, and Poisson).
Author: Emily Goren <emily.goren@gmail.com> and John Hughes
<jphughesjr@gmail.com>
Maintainer: John Hughes <jphughesjr@gmail.com>
Diff between copCAR versions 2.0 dated 2017-02-16 and 2.0-1 dated 2017-02-21
copCAR-2.0-1/copCAR/DESCRIPTION | 12 ++-- copCAR-2.0-1/copCAR/MD5 | 28 +++++----- copCAR-2.0-1/copCAR/NAMESPACE | 4 - copCAR-2.0-1/copCAR/R/RcppExports.R | 3 - copCAR-2.0-1/copCAR/R/copCAR.R | 76 ++++++++++++++++------------ copCAR-2.0-1/copCAR/R/zzz.R | 2 copCAR-2.0-1/copCAR/man/adjacency.matrix.Rd | 1 copCAR-2.0-1/copCAR/man/copCAR.Rd | 13 ++-- copCAR-2.0-1/copCAR/man/negbinomial.Rd | 5 - copCAR-2.0-1/copCAR/man/rcopCAR.Rd | 3 - copCAR-2.0-1/copCAR/man/residuals.copCAR.Rd | 1 copCAR-2.0-1/copCAR/man/summary.copCAR.Rd | 1 copCAR-2.0-1/copCAR/man/vcov.copCAR.Rd | 1 copCAR-2.0-1/copCAR/src/RcppExports.cpp |only copCAR-2.0-1/copCAR/src/copCARmod.cpp |only copCAR-2.0/copCAR/src/buildM.cpp |only copCAR-2.0/copCAR/src/buildM.h |only 17 files changed, 75 insertions(+), 75 deletions(-)
Title: Create Interactive Web Maps with the JavaScript 'Leaflet'
Library
Description: Create and customize interactive maps using the 'Leaflet'
JavaScript library and the 'htmlwidgets' package. These maps can be used
directly from the R console, from 'RStudio', in Shiny apps and R Markdown
documents.
Author: Joe Cheng [aut, cre],
Bhaskar Karambelkar [aut],
Yihui Xie [aut],
Hadley Wickham [ctb],
Kenton Russell [ctb],
Kent Johnson [ctb],
jQuery Foundation and contributors [ctb, cph] (jQuery library),
Vladimir Agafonkin [ctb, cph] (Leaflet library),
CloudMade [cph] (Leaflet library),
Leaflet contributors [ctb] (Leaflet library),
Leaflet Providers contributors [ctb, cph] (Leaflet Providers plugin),
Brandon Copeland [ctb, cph] (leaflet-measure plugin),
Jacob Toye [ctb, cph] (Leaflet.label plugin),
Joerg Dietrich [ctb, cph] (Leaflet.Terminator plugin),
Benjamin Becquet [ctb, cph] (Leaflet.MagnifyingGlass plugin),
Norkart AS [ctb, cph] (Leaflet.MiniMap plugin),
L. Voogdt [ctb, cph] (Leaflet.awesome-markers plugin),
Daniel Montague [ctb, cph] (Leaflet.EasyButton plugin),
Kartena AB [ctb, cph] (Proj4Leaflet plugin),
Robert Kajic [ctb, cph] (leaflet-locationfilter plugin),
Mapbox [ctb, cph] (leaflet-omnivore plugin),
Michael Bostock [ctb, cph] (topojson),
RStudio [cph]
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between leaflet versions 1.0.1 dated 2016-02-27 and 1.1.0 dated 2017-02-21
leaflet-1.0.1/leaflet/LICENSE |only leaflet-1.0.1/leaflet/tests/testit/test-normalize.R |only leaflet-1.1.0/leaflet/DESCRIPTION | 55 leaflet-1.1.0/leaflet/LICENSE.note |only leaflet-1.1.0/leaflet/MD5 | 245 leaflet-1.1.0/leaflet/NAMESPACE | 80 leaflet-1.1.0/leaflet/NEWS | 82 leaflet-1.1.0/leaflet/R/colors.R | 138 leaflet-1.1.0/leaflet/R/controls.R | 6 leaflet-1.1.0/leaflet/R/data.R | 33 leaflet-1.1.0/leaflet/R/dependencies.R |only leaflet-1.1.0/leaflet/R/layers.R | 353 - leaflet-1.1.0/leaflet/R/leaflet.R | 157 leaflet-1.1.0/leaflet/R/legacy.R | 4 leaflet-1.1.0/leaflet/R/legend.R | 6 leaflet-1.1.0/leaflet/R/methods.R | 9 leaflet-1.1.0/leaflet/R/normalize-SharedData.R |only leaflet-1.1.0/leaflet/R/normalize-map.R |only leaflet-1.1.0/leaflet/R/normalize-sf.R |only leaflet-1.1.0/leaflet/R/normalize-sp.R |only leaflet-1.1.0/leaflet/R/normalize.R | 300 leaflet-1.1.0/leaflet/R/package.R | 4 leaflet-1.1.0/leaflet/R/plugin-awesomeMarkers.R |only leaflet-1.1.0/leaflet/R/plugin-easybutton.R |only leaflet-1.1.0/leaflet/R/plugin-graticule.R |only leaflet-1.1.0/leaflet/R/plugin-measure.R |only leaflet-1.1.0/leaflet/R/plugin-minimap.R |only leaflet-1.1.0/leaflet/R/plugin-omnivore.R | 16 leaflet-1.1.0/leaflet/R/plugin-providers.R | 18 leaflet-1.1.0/leaflet/R/plugin-simplegraticule.R |only leaflet-1.1.0/leaflet/R/plugin-terminator.R |only leaflet-1.1.0/leaflet/R/scalebar.R |only leaflet-1.1.0/leaflet/R/selection.R |only leaflet-1.1.0/leaflet/R/shiny.R | 4 leaflet-1.1.0/leaflet/R/utils.R | 78 leaflet-1.1.0/leaflet/README.md | 23 leaflet-1.1.0/leaflet/data |only leaflet-1.1.0/leaflet/inst/htmlwidgets/leaflet.js | 3363 ++++++---- leaflet-1.1.0/leaflet/inst/htmlwidgets/leaflet.yaml | 15 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/Leaflet.label |only leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/jquery/jquery.js |only leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/jquery/jquery.min.js | 9 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-measure |only leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-omnivore/index.js | 2 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-omnivore/leaflet-omnivore.js | 1760 +++-- leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-omnivore/leaflet-omnivore.min.js | 2 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-omnivore/package.json | 40 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/README.md | 19 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/bower.json | 2 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/leaflet-providers.js | 255 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/package.json | 19 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/providers.json |only leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet/images/1px.png |only leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet/leaflet-src.js | 122 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet/leaflet.css | 3 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet/leaflet.js | 10 leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Leaflet-MiniMap |only leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Leaflet.EasyButton |only leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Leaflet.Graticule |only leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Leaflet.SimpleGraticule |only leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Leaflet.Terminator |only leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Leaflet.awesome-markers |only leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Leaflet.markercluster/MarkerCluster.css | 10 leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Leaflet.markercluster/leaflet.markercluster-src.js |only leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Leaflet.markercluster/leaflet.markercluster.freezable-src.js |only leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Leaflet.markercluster/leaflet.markercluster.js | 2 leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Leaflet.markercluster/leaflet.markercluster.layersupport-src.js |only leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/Proj4Leaflet |only leaflet-1.1.0/leaflet/inst/htmlwidgets/plugins/leaflet-locationfilter |only leaflet-1.1.0/leaflet/man/addAwesomeMarkers.Rd |only leaflet-1.1.0/leaflet/man/addGraticule.Rd |only leaflet-1.1.0/leaflet/man/addLayersControl.Rd | 27 leaflet-1.1.0/leaflet/man/addLegend.Rd | 14 leaflet-1.1.0/leaflet/man/addMeasure.Rd |only leaflet-1.1.0/leaflet/man/addMiniMap.Rd |only leaflet-1.1.0/leaflet/man/addProviderTiles.Rd | 18 leaflet-1.1.0/leaflet/man/addRasterImage.Rd | 14 leaflet-1.1.0/leaflet/man/addScaleBar.Rd |only leaflet-1.1.0/leaflet/man/addSimpleGraticule.Rd |only leaflet-1.1.0/leaflet/man/addTerminator.Rd |only leaflet-1.1.0/leaflet/man/atlStorms2005.Rd |only leaflet-1.1.0/leaflet/man/awesomeIconList.Rd |only leaflet-1.1.0/leaflet/man/awesomeIcons.Rd |only leaflet-1.1.0/leaflet/man/breweries91.Rd |only leaflet-1.1.0/leaflet/man/colorNumeric.Rd | 29 leaflet-1.1.0/leaflet/man/deprecated.Rd | 2 leaflet-1.1.0/leaflet/man/derivePoints.Rd |only leaflet-1.1.0/leaflet/man/derivePolygons.Rd |only leaflet-1.1.0/leaflet/man/dispatch.Rd | 9 leaflet-1.1.0/leaflet/man/easyButton.Rd |only leaflet-1.1.0/leaflet/man/evalFormula.Rd |only leaflet-1.1.0/leaflet/man/expandLimits.Rd |only leaflet-1.1.0/leaflet/man/expandLimitsBbox.Rd |only leaflet-1.1.0/leaflet/man/filterNULL.Rd |only leaflet-1.1.0/leaflet/man/gadmCHE.Rd |only leaflet-1.1.0/leaflet/man/getMapData.Rd |only leaflet-1.1.0/leaflet/man/iconList.Rd | 11 leaflet-1.1.0/leaflet/man/icons.Rd | 11 leaflet-1.1.0/leaflet/man/leaflet.Rd | 78 leaflet-1.1.0/leaflet/man/leafletDependencies.Rd |only leaflet-1.1.0/leaflet/man/leafletProxy.Rd | 39 leaflet-1.1.0/leaflet/man/makeAwesomeIcon.Rd |only leaflet-1.1.0/leaflet/man/makeIcon.Rd | 11 leaflet-1.1.0/leaflet/man/map-layers.Rd | 151 leaflet-1.1.0/leaflet/man/map-methods.Rd | 2 leaflet-1.1.0/leaflet/man/map-options.Rd | 74 leaflet-1.1.0/leaflet/man/map-shiny.Rd | 5 leaflet-1.1.0/leaflet/man/mapOptions.Rd | 18 leaflet-1.1.0/leaflet/man/previewColors.Rd | 2 leaflet-1.1.0/leaflet/man/providers.Rd |only leaflet-1.1.0/leaflet/man/providers.details.Rd |only leaflet-1.1.0/leaflet/man/remove.Rd | 13 leaflet-1.1.0/leaflet/man/safeLabel.Rd |only leaflet-1.1.0/leaflet/man/showGroup.Rd | 2 leaflet-1.1.0/leaflet/man/validateCoords.Rd |only leaflet-1.1.0/leaflet/tests/testit/test-legend.R | 6 leaflet-1.1.0/leaflet/tests/testit/test-measure.R |only leaflet-1.1.0/leaflet/tests/testit/test-remote.R | 12 leaflet-1.1.0/leaflet/tests/testthat |only leaflet-1.1.0/leaflet/tests/testthat.R |only 120 files changed, 5066 insertions(+), 2726 deletions(-)
Title: Process the Apache Web Server Log Files
Description: Provides capabilities to process Apache HTTPD Log files.The main functionalities are to extract data from access and error log files to data frames.
Author: Diogo Silveira Mendonca
Maintainer: Diogo Silveira Mendonca <diogosmendonca@gmail.com>
Diff between ApacheLogProcessor versions 0.1.6 dated 2016-08-16 and 0.2.0 dated 2017-02-21
ApacheLogProcessor-0.1.6/ApacheLogProcessor/man/read.apache.log.Rd |only ApacheLogProcessor-0.2.0/ApacheLogProcessor/DESCRIPTION | 15 ApacheLogProcessor-0.2.0/ApacheLogProcessor/MD5 | 27 ApacheLogProcessor-0.2.0/ApacheLogProcessor/NAMESPACE | 10 ApacheLogProcessor-0.2.0/ApacheLogProcessor/R/ApacheLogProcessor.R | 646 +++++++++- ApacheLogProcessor-0.2.0/ApacheLogProcessor/README.md | 10 ApacheLogProcessor-0.2.0/ApacheLogProcessor/inst/examples/access_log_combined.txt | 2 ApacheLogProcessor-0.2.0/ApacheLogProcessor/inst/examples/access_log_common.txt | 2 ApacheLogProcessor-0.2.0/ApacheLogProcessor/inst/examples/access_log_with_params_inside_url.txt |only ApacheLogProcessor-0.2.0/ApacheLogProcessor/inst/examples/access_log_with_query_string.log |only ApacheLogProcessor-0.2.0/ApacheLogProcessor/inst/examples/error_log.log |only ApacheLogProcessor-0.2.0/ApacheLogProcessor/inst/examples/m_access_log_combined_1.log.gz |only ApacheLogProcessor-0.2.0/ApacheLogProcessor/inst/examples/m_access_log_combined_2.log.gz |only ApacheLogProcessor-0.2.0/ApacheLogProcessor/inst/examples/m_error_log_1.log.gz |only ApacheLogProcessor-0.2.0/ApacheLogProcessor/inst/examples/m_error_log_2.log.gz |only ApacheLogProcessor-0.2.0/ApacheLogProcessor/man/clear.urls.Rd |only ApacheLogProcessor-0.2.0/ApacheLogProcessor/man/get.url.params.Rd |only ApacheLogProcessor-0.2.0/ApacheLogProcessor/man/parse.php.msgs.Rd |only ApacheLogProcessor-0.2.0/ApacheLogProcessor/man/read.apache.access.log.Rd |only ApacheLogProcessor-0.2.0/ApacheLogProcessor/man/read.apache.error.log.Rd |only ApacheLogProcessor-0.2.0/ApacheLogProcessor/man/read.multiple.apache.access.log.Rd |only ApacheLogProcessor-0.2.0/ApacheLogProcessor/man/read.multiple.apache.error.log.Rd |only 22 files changed, 655 insertions(+), 57 deletions(-)
More information about ApacheLogProcessor at CRAN
Permanent link
Title: HTML Output Formats and Templates for 'rmarkdown' Documents
Description: HTML formats and templates for 'rmarkdown' documents, with some extra
features such as automatic table of contents, lightboxed figures, dynamic
crosstab helper.
Author: Julien Barnier [aut, cre]
Maintainer: Julien Barnier <julien.barnier@ens-lyon.fr>
Diff between rmdformats versions 0.3 dated 2016-09-05 and 0.3.1 dated 2017-02-21
DESCRIPTION | 8 MD5 | 38 +- NEWS | 8 R/html_clean.R | 1 R/html_dependencies.R | 14 + R/html_docco.R | 1 R/material.R | 1 R/readthedown.R | 1 README.md | 2 build/vignette.rds |binary inst/doc/introduction.html | 365 +++++++++++++++++++--------- inst/templates/html_clean/html_clean.html | 2 inst/templates/html_docco/docco.css | 3 inst/templates/html_docco/html_docco.html | 2 inst/templates/material/material.html | 2 inst/templates/material/material.js | 35 ++ inst/templates/navigation-1.1 |only inst/templates/readthedown/readthedown.css | 6 inst/templates/readthedown/readthedown.html | 2 19 files changed, 338 insertions(+), 153 deletions(-)
Title: Tools for Eurostat Open Data
Description: Tools to download data from the Eurostat database
<http://ec.europa.eu/eurostat> together with search and
manipulation utilities.
Author: Leo Lahti [aut, cre],
Przemyslaw Biecek [aut],
Markus Kainu [aut],
Janne Huovari [aut],
Joona Lehtomaki [ctb],
Francois Briatte [ctb],
Oliver Reiter [ctb]
Maintainer: Leo Lahti <louhos@googlegroups.com>
Diff between eurostat versions 2.2.1 dated 2016-09-14 and 2.2.43 dated 2017-02-21
eurostat-2.2.1/eurostat/vignettes/fig/maps3-1.pdf |only eurostat-2.2.1/eurostat/vignettes/fig/maps3-2.pdf |only eurostat-2.2.1/eurostat/vignettes/fig/maps4-1.pdf |only eurostat-2.2.1/eurostat/vignettes/fig/maps6-1.pdf |only eurostat-2.2.1/eurostat/vignettes/fig/maps7-1.pdf |only eurostat-2.2.1/eurostat/vignettes/fig/maps8-1.pdf |only eurostat-2.2.1/eurostat/vignettes/fig/mapsfi-1.pdf |only eurostat-2.2.1/eurostat/vignettes/tmp |only eurostat-2.2.43/eurostat/DESCRIPTION | 41 +- eurostat-2.2.43/eurostat/LICENSE | 2 eurostat-2.2.43/eurostat/MD5 | 75 ++-- eurostat-2.2.43/eurostat/R/get_eurostat_geospatial.R | 29 + eurostat-2.2.43/eurostat/R/label_eurostat.R | 33 + eurostat-2.2.43/eurostat/R/search_eurostat.R | 26 - eurostat-2.2.43/eurostat/R/set_eurostat_toc.R | 2 eurostat-2.2.43/eurostat/README.md | 81 +++- eurostat-2.2.43/eurostat/build/vignette.rds |binary eurostat-2.2.43/eurostat/inst/CITATION | 4 eurostat-2.2.43/eurostat/inst/doc/eurostat_tutorial.R | 20 - eurostat-2.2.43/eurostat/inst/doc/eurostat_tutorial.Rmd | 8 eurostat-2.2.43/eurostat/inst/doc/eurostat_tutorial.pdf |binary eurostat-2.2.43/eurostat/man/get_eurostat_geospatial.Rd | 14 eurostat-2.2.43/eurostat/man/search_eurostat.Rd | 21 - eurostat-2.2.43/eurostat/tests/testthat/test-all.R | 6 eurostat-2.2.43/eurostat/vignettes/2015-RJournal |only eurostat-2.2.43/eurostat/vignettes/eurostat_tutorial.Rmd | 8 eurostat-2.2.43/eurostat/vignettes/eurostat_tutorial.html | 256 +++----------- eurostat-2.2.43/eurostat/vignettes/eurostat_tutorial.md | 251 +++---------- eurostat-2.2.43/eurostat/vignettes/fig/maps1-1.pdf |binary eurostat-2.2.43/eurostat/vignettes/fig/maps1-1.png |binary eurostat-2.2.43/eurostat/vignettes/fig/maps2-1.pdf |binary eurostat-2.2.43/eurostat/vignettes/fig/maps2-1.png |binary eurostat-2.2.43/eurostat/vignettes/fig/plotGallery-1.pdf |binary eurostat-2.2.43/eurostat/vignettes/fig/plotGallery-1.png |binary eurostat-2.2.43/eurostat/vignettes/fig/trains_plot-1.pdf |binary eurostat-2.2.43/eurostat/vignettes/fig/trains_plot-1.png |binary 36 files changed, 378 insertions(+), 499 deletions(-)
Title: Read and Write CSV Files with Selected Conventions
Description: Reads and writes CSV with selected conventions.
Uses the same generic function for reading and writing to promote consistent formats.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between csv versions 0.3 dated 2017-02-18 and 0.4 dated 2017-02-21
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/csv.R | 4 ++-- man/as.csv.character.Rd | 4 ++-- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Efficient Score Statistics for Genome-Wide SNP Set Analysis
Description: An implementation of the use of efficient score statistics
in genome-wide SNP set analysis with complex traits. Three standard score statistics
(Cox, binomial, and Gaussian) are provided, but the package is easily extensible to
include others. Code implementing the inferential procedure is primarily written in C++ and
utilizes parallelization of the analysis to reduce runtime. A supporting function offers
simple computation of observed, permutation, and FWER and FDR adjusted p-values.
Author: Chanhee Yi, Alexander Sibley, and Kouros Owzar
Maintainer: Alexander Sibley <alexander.sibley@dm.duke.edu>
Diff between RSNPset versions 0.5 dated 2015-11-20 and 0.5.2 dated 2017-02-21
DESCRIPTION | 8 ++++---- MD5 | 25 +++++++++++++------------ NEWS | 9 +++++++++ R/rsnpset.R | 6 ++---- R/rsnpset.pvalue.R | 23 ++++++++++------------- build/vignette.rds |binary inst/doc/RSNPset.R | 4 +++- inst/doc/RSNPset.Rnw | 6 ++++-- inst/doc/RSNPset.pdf |binary man/RSNPset-package.Rd | 4 ++-- man/rsnpset.pvalue.Rd | 6 +++--- man/summary.RSNPset.pvalue.Rd | 2 +- src/init.c |only vignettes/RSNPset.Rnw | 6 ++++-- 14 files changed, 55 insertions(+), 44 deletions(-)
Title: Some Additional Multiple Imputation Functions, Especially for
'mice'
Description:
Contains some auxiliary functions for multiple
imputation which complements existing functionality
in R.
In addition to some utility functions, main features
include plausible value imputation, multilevel
imputation functions, imputation using partial least
squares (PLS) for high dimensional predictors, nested
multiple imputation.
Author:
Alexander Robitzsch [aut, cre], Simon Grund [aut],
Thorsten Henke [aut]
Maintainer:
Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between miceadds versions 2.2-0 dated 2017-01-11 and 2.3-0 dated 2017-02-21
miceadds-2.2-0/miceadds/src/kernelpls_algorithm.h |only miceadds-2.3-0/miceadds/DESCRIPTION | 8 miceadds-2.3-0/miceadds/MD5 | 422 +++++----- miceadds-2.3-0/miceadds/R/ANSI_create_table.R |only miceadds-2.3-0/miceadds/R/ANSI_extend_table.R |only miceadds-2.3-0/miceadds/R/ANSI_fomat_latex_table.R |only miceadds-2.3-0/miceadds/R/ANSI_matrix_include_cols.R |only miceadds-2.3-0/miceadds/R/ANSI_matrix_include_rows.R |only miceadds-2.3-0/miceadds/R/GroupMean.R | 22 miceadds-2.3-0/miceadds/R/GroupSD.R | 8 miceadds-2.3-0/miceadds/R/GroupSum.R | 18 miceadds-2.3-0/miceadds/R/List2nestedList.R | 12 miceadds-2.3-0/miceadds/R/MIcombine.NestedImputationResultList.R | 2 miceadds-2.3-0/miceadds/R/MIwaldtest.R | 2 miceadds-2.3-0/miceadds/R/NMIcombine.R | 2 miceadds-2.3-0/miceadds/R/NMIextract.R | 2 miceadds-2.3-0/miceadds/R/NMIwaldtest.R | 2 miceadds-2.3-0/miceadds/R/NestedImputationList.R | 2 miceadds-2.3-0/miceadds/R/RcppExports.R |only miceadds-2.3-0/miceadds/R/Rhat1.R | 2 miceadds-2.3-0/miceadds/R/Rsessinfo.R | 2 miceadds-2.3-0/miceadds/R/VariableNames2String.R | 2 miceadds-2.3-0/miceadds/R/antilogit.R | 4 miceadds-2.3-0/miceadds/R/complete.miceadds.R | 4 miceadds-2.3-0/miceadds/R/cor2fisher.R | 6 miceadds-2.3-0/miceadds/R/cor_avoid_zero.R | 4 miceadds-2.3-0/miceadds/R/covTest.R | 20 miceadds-2.3-0/miceadds/R/create.designMatrices.waldtest.R | 14 miceadds-2.3-0/miceadds/R/crlem.R | 18 miceadds-2.3-0/miceadds/R/crlrem.R |only miceadds-2.3-0/miceadds/R/cxxfunction.copy.R | 16 miceadds-2.3-0/miceadds/R/datalist2mids.R | 50 - miceadds-2.3-0/miceadds/R/datlist_create.R | 28 miceadds-2.3-0/miceadds/R/draw.pv.ctt.R | 70 - miceadds-2.3-0/miceadds/R/fast.groupmean.R | 4 miceadds-2.3-0/miceadds/R/fast.groupsum.R | 4 miceadds-2.3-0/miceadds/R/file_path.R | 8 miceadds-2.3-0/miceadds/R/filename_split.R | 22 miceadds-2.3-0/miceadds/R/files_move.R | 30 miceadds-2.3-0/miceadds/R/fisher2cor.R | 6 miceadds-2.3-0/miceadds/R/glm.cluster.R | 20 miceadds-2.3-0/miceadds/R/grep.vec.R | 2 miceadds-2.3-0/miceadds/R/include.2l.predictors_v1.R | 26 miceadds-2.3-0/miceadds/R/index.dataframe.R | 2 miceadds-2.3-0/miceadds/R/jomo2datlist.R | 8 miceadds-2.3-0/miceadds/R/kernelpls.fit2.R | 82 - miceadds-2.3-0/miceadds/R/library_install.R | 10 miceadds-2.3-0/miceadds/R/lm.cluster.R | 22 miceadds-2.3-0/miceadds/R/load.Rdata.R | 2 miceadds-2.3-0/miceadds/R/load.data.R | 14 miceadds-2.3-0/miceadds/R/ma.scale2.R | 12 miceadds-2.3-0/miceadds/R/ma.wtd.aux.data.R | 46 - miceadds-2.3-0/miceadds/R/ma.wtd.corNA.R | 2 miceadds-2.3-0/miceadds/R/ma.wtd.covNA.R | 2 miceadds-2.3-0/miceadds/R/ma.wtd.curtosisNA.R | 2 miceadds-2.3-0/miceadds/R/ma.wtd.quantileNA.R | 2 miceadds-2.3-0/miceadds/R/ma.wtd.skewnessNA.R | 2 miceadds-2.3-0/miceadds/R/max0.R | 6 miceadds-2.3-0/miceadds/R/mean0.R | 6 miceadds-2.3-0/miceadds/R/mi.anova.R | 2 miceadds-2.3-0/miceadds/R/mi_dstat.R | 26 miceadds-2.3-0/miceadds/R/mice.1chain.R | 80 - miceadds-2.3-0/miceadds/R/mice.impute.2l.binary.R | 4 miceadds-2.3-0/miceadds/R/mice.impute.2l.contextual.norm.R | 32 miceadds-2.3-0/miceadds/R/mice.impute.2l.contextual.pmm.R | 4 miceadds-2.3-0/miceadds/R/mice.impute.2l.continuous.R | 4 miceadds-2.3-0/miceadds/R/mice.impute.2l.eap.R | 2 miceadds-2.3-0/miceadds/R/mice.impute.2l.groupmean.R | 18 miceadds-2.3-0/miceadds/R/mice.impute.2l.groupmean.elim.R | 18 miceadds-2.3-0/miceadds/R/mice.impute.2l.latentgroupmean.ML.R | 34 miceadds-2.3-0/miceadds/R/mice.impute.2l.lmer.R | 52 - miceadds-2.3-0/miceadds/R/mice.impute.2l.plausible.values.R | 4 miceadds-2.3-0/miceadds/R/mice.impute.2l.pls.R | 4 miceadds-2.3-0/miceadds/R/mice.impute.2l.pls2.R | 4 miceadds-2.3-0/miceadds/R/mice.impute.2l.pmm.R | 4 miceadds-2.3-0/miceadds/R/mice.impute.2lonly.function.R | 34 miceadds-2.3-0/miceadds/R/mice.impute.2lonly.norm2.R | 2 miceadds-2.3-0/miceadds/R/mice.impute.2lonly.pmm2.R | 10 miceadds-2.3-0/miceadds/R/mice.impute.bygroup.R | 30 miceadds-2.3-0/miceadds/R/mice.impute.eap.R | 6 miceadds-2.3-0/miceadds/R/mice.impute.grouped.R | 16 miceadds-2.3-0/miceadds/R/mice.impute.hotDeck.R | 32 miceadds-2.3-0/miceadds/R/mice.impute.norm3.R | 2 miceadds-2.3-0/miceadds/R/mice.impute.plausible.values.R | 8 miceadds-2.3-0/miceadds/R/mice.impute.pls.R | 24 miceadds-2.3-0/miceadds/R/mice.impute.pmm3.R | 2 miceadds-2.3-0/miceadds/R/mice.impute.pmm6.R | 8 miceadds-2.3-0/miceadds/R/mice.impute.weighted.norm.R | 2 miceadds-2.3-0/miceadds/R/mice.nmi.R | 2 miceadds-2.3-0/miceadds/R/mice_imputation_create_interactions.R | 19 miceadds-2.3-0/miceadds/R/mice_imputation_extract_list_arguments.R | 8 miceadds-2.3-0/miceadds/R/mice_imputation_get_states.R | 14 miceadds-2.3-0/miceadds/R/mice_imputation_include_cluster_effect.R | 20 miceadds-2.3-0/miceadds/R/mice_imputation_multilevel_include_2l_predictors.R | 28 miceadds-2.3-0/miceadds/R/mice_imputation_pls_correlation_criteria.R | 6 miceadds-2.3-0/miceadds/R/mice_imputation_pls_do_impute.R | 12 miceadds-2.3-0/miceadds/R/mice_imputation_pls_estimate_pls_regression.R | 22 miceadds-2.3-0/miceadds/R/mice_imputation_pls_helper.R | 32 miceadds-2.3-0/miceadds/R/mice_imputation_pls_include_interactions.R | 56 - miceadds-2.3-0/miceadds/R/mice_imputation_pls_include_quadratics.R | 24 miceadds-2.3-0/miceadds/R/mice_imputation_pls_largest_correlations.R | 40 miceadds-2.3-0/miceadds/R/mice_imputation_pls_pca_reduction.R | 16 miceadds-2.3-0/miceadds/R/mice_imputation_pls_print_progress1.R | 2 miceadds-2.3-0/miceadds/R/mice_imputation_pls_print_progress2.R | 2 miceadds-2.3-0/miceadds/R/mice_imputation_pls_scale_x.R | 2 miceadds-2.3-0/miceadds/R/mice_imputation_prepare_2l_functions.R | 12 miceadds-2.3-0/miceadds/R/mice_imputation_weighted_norm_draw.R | 2 miceadds-2.3-0/miceadds/R/mice_multilevel_add_groupmeans.R | 8 miceadds-2.3-0/miceadds/R/mice_multilevel_create_formula.R | 6 miceadds-2.3-0/miceadds/R/mice_multilevel_doCall_suppressWarnings.R | 10 miceadds-2.3-0/miceadds/R/mice_multilevel_draw_binomial.R | 6 miceadds-2.3-0/miceadds/R/mice_multilevel_draw_rnorm1.R | 10 miceadds-2.3-0/miceadds/R/mice_multilevel_imputation_blme_args.R | 8 miceadds-2.3-0/miceadds/R/mice_multilevel_imputation_draw_random_effects.R | 16 miceadds-2.3-0/miceadds/R/mice_multilevel_imputation_draw_residuals.R | 6 miceadds-2.3-0/miceadds/R/mice_multilevel_imputation_pmm5.R | 34 miceadds-2.3-0/miceadds/R/mice_multilevel_impute_groupmean.R | 18 miceadds-2.3-0/miceadds/R/micombine.chisquare.R | 4 miceadds-2.3-0/miceadds/R/mids2mlwin.R | 6 miceadds-2.3-0/miceadds/R/min0.R | 6 miceadds-2.3-0/miceadds/R/nested.datlist2datlist.R | 2 miceadds-2.3-0/miceadds/R/nested.datlist_create.R | 2 miceadds-2.3-0/miceadds/R/nestedList2List.R | 12 miceadds-2.3-0/miceadds/R/nesteddatlist2datlist.R | 2 miceadds-2.3-0/miceadds/R/norm.draw3.R | 2 miceadds-2.3-0/miceadds/R/normalize_vector.R | 6 miceadds-2.3-0/miceadds/R/pca.covridge.R | 8 miceadds-2.3-0/miceadds/R/pool.mi.R | 64 - miceadds-2.3-0/miceadds/R/pool.mids.nmi.R | 10 miceadds-2.3-0/miceadds/R/pool.nmi.scalar.helper.R | 8 miceadds-2.3-0/miceadds/R/predict.kernelfit.pls2.R | 2 miceadds-2.3-0/miceadds/R/prop_miss.R | 8 miceadds-2.3-0/miceadds/R/quantile0.R | 2 miceadds-2.3-0/miceadds/R/read.fwf2.R | 4 miceadds-2.3-0/miceadds/R/remove.lindep_miceadds.R | 4 miceadds-2.3-0/miceadds/R/save.data.R | 28 miceadds-2.3-0/miceadds/R/scale_datlist.R | 42 miceadds-2.3-0/miceadds/R/scan0.R | 10 miceadds-2.3-0/miceadds/R/sd0.R | 4 miceadds-2.3-0/miceadds/R/source.all.R | 6 miceadds-2.3-0/miceadds/R/stats0.R | 8 miceadds-2.3-0/miceadds/R/str_C.expand.grid.R | 2 miceadds-2.3-0/miceadds/R/summary.mipo.nmi.R | 2 miceadds-2.3-0/miceadds/R/summary.mira.nmi.R | 2 miceadds-2.3-0/miceadds/R/sumpreserving.rounding.R | 2 miceadds-2.3-0/miceadds/R/systime.R | 2 miceadds-2.3-0/miceadds/R/var0.R | 4 miceadds-2.3-0/miceadds/R/vector2matrix.R | 2 miceadds-2.3-0/miceadds/R/visitSequence.determine.R | 2 miceadds-2.3-0/miceadds/R/with.NestedImputationList.R | 2 miceadds-2.3-0/miceadds/R/with.datlist.R | 2 miceadds-2.3-0/miceadds/R/with.nested.datlist.R | 2 miceadds-2.3-0/miceadds/R/withPool.R | 2 miceadds-2.3-0/miceadds/R/within.NestedImputationList.R | 2 miceadds-2.3-0/miceadds/R/within.datlist.R | 2 miceadds-2.3-0/miceadds/R/within.imputationList.R | 2 miceadds-2.3-0/miceadds/R/within.nested.datlist.R | 2 miceadds-2.3-0/miceadds/R/write.datlist.R | 8 miceadds-2.3-0/miceadds/R/write.mice.imputation.R | 12 miceadds-2.3-0/miceadds/R/write.pspp.R | 2 miceadds-2.3-0/miceadds/R/zzz.R | 2 miceadds-2.3-0/miceadds/inst/NEWS | 17 miceadds-2.3-0/miceadds/man/NMIwaldtest.Rd | 30 miceadds-2.3-0/miceadds/man/NestedImputationList.Rd | 6 miceadds-2.3-0/miceadds/man/Rsessinfo.Rd | 2 miceadds-2.3-0/miceadds/man/VariableNames2String.Rd | 2 miceadds-2.3-0/miceadds/man/complete.miceadds.Rd | 12 miceadds-2.3-0/miceadds/man/data.graham.Rd | 2 miceadds-2.3-0/miceadds/man/datalist2mids.Rd | 2 miceadds-2.3-0/miceadds/man/datlist_create.Rd | 32 miceadds-2.3-0/miceadds/man/draw.pv.ctt.Rd | 6 miceadds-2.3-0/miceadds/man/jomo2datlist.Rd | 2 miceadds-2.3-0/miceadds/man/kernelpls.fit2.Rd | 4 miceadds-2.3-0/miceadds/man/lm.cluster.Rd | 10 miceadds-2.3-0/miceadds/man/load.Rdata.Rd | 2 miceadds-2.3-0/miceadds/man/load.data.Rd | 2 miceadds-2.3-0/miceadds/man/ma.scale2.Rd | 6 miceadds-2.3-0/miceadds/man/ma.wtd.statNA.Rd | 10 miceadds-2.3-0/miceadds/man/mi.anova.Rd | 6 miceadds-2.3-0/miceadds/man/mi_dstat.Rd | 2 miceadds-2.3-0/miceadds/man/mice.1chain.Rd | 4 miceadds-2.3-0/miceadds/man/mice.impute.2lonly.function.Rd | 268 +++--- miceadds-2.3-0/miceadds/man/mice.impute.bygroup.Rd | 2 miceadds-2.3-0/miceadds/man/mice.impute.eap.Rd | 4 miceadds-2.3-0/miceadds/man/mice.impute.plausible.values.Rd | 2 miceadds-2.3-0/miceadds/man/mice.impute.pls.Rd | 2 miceadds-2.3-0/miceadds/man/mice.impute.tricube.pmm.Rd | 2 miceadds-2.3-0/miceadds/man/mice.nmi.Rd | 6 miceadds-2.3-0/miceadds/man/miceadds-defunct.Rd | 118 +- miceadds-2.3-0/miceadds/man/miceadds-package.Rd | 10 miceadds-2.3-0/miceadds/man/micombine.F.Rd | 9 miceadds-2.3-0/miceadds/man/micombine.chisquare.Rd | 11 miceadds-2.3-0/miceadds/man/micombine.cor.Rd | 16 miceadds-2.3-0/miceadds/man/mids2datlist.Rd | 18 miceadds-2.3-0/miceadds/man/mids2mlwin.Rd | 118 +- miceadds-2.3-0/miceadds/man/nestedList2List.Rd | 6 miceadds-2.3-0/miceadds/man/pca.covridge.Rd | 2 miceadds-2.3-0/miceadds/man/pool.mids.nmi.Rd | 22 miceadds-2.3-0/miceadds/man/pool_mi.Rd | 10 miceadds-2.3-0/miceadds/man/round2.Rd | 10 miceadds-2.3-0/miceadds/man/save.data.Rd | 6 miceadds-2.3-0/miceadds/man/scale_datlist.Rd | 48 - miceadds-2.3-0/miceadds/man/scan.vector.Rd | 4 miceadds-2.3-0/miceadds/man/subset_datlist.Rd | 32 miceadds-2.3-0/miceadds/man/sumpreserving.rounding.Rd | 8 miceadds-2.3-0/miceadds/man/systime.Rd | 2 miceadds-2.3-0/miceadds/man/tw.imputation.Rd | 4 miceadds-2.3-0/miceadds/man/visitSequence.determine.Rd | 2 miceadds-2.3-0/miceadds/man/with.miceadds.Rd | 16 miceadds-2.3-0/miceadds/man/write.fwf2.Rd | 2 miceadds-2.3-0/miceadds/man/write.mice.imputation.Rd | 2 miceadds-2.3-0/miceadds/src/RcppExports.cpp |only miceadds-2.3-0/miceadds/src/create_interactions_c.cpp | 44 - miceadds-2.3-0/miceadds/src/init.c |only miceadds-2.3-0/miceadds/src/kernelpls_1dim_c.cpp | 199 +++- miceadds-2.3-0/miceadds/src/ma_pmm6_csource.cpp | 61 - miceadds-2.3-0/miceadds/src/ma_scale.cpp | 60 - 217 files changed, 1826 insertions(+), 1760 deletions(-)
Title: Indoor Positioning Fingerprinting Toolset
Description: Algorithms and utility functions for indoor positioning using fingerprinting techniques.
These functions are designed for manipulation of RSSI (Received Signal Strength Intensity) data
sets, estimation of positions,comparison of the performance of different models, and graphical
visualization of data. Machine learning algorithms and methods such as k-nearest neighbors or
probabilistic fingerprinting are implemented in this package to perform analysis
and estimations over RSSI data sets.
Author: Emilio Sansano
Maintainer: Emilio Sansano <esansano@uji.es>
Diff between ipft versions 0.1.03 dated 2017-02-15 and 0.2.2 dated 2017-02-21
DESCRIPTION | 14 ++++++------- MD5 | 33 ++++++++++++++++--------------- R/ipft.R | 55 ++++++++++++++++++++++++++-------------------------- man/ipfCluster.Rd | 6 ++--- man/ipfDist.Rd | 7 ++---- man/ipfEstimate.Rd | 1 man/ipfGroup.Rd | 7 ++---- man/ipfKnn.Rd | 11 ++++------ man/ipfPlotEcdf.Rd | 1 man/ipfPlotEst.Rd | 7 ++---- man/ipfPlotLoc.Rd | 1 man/ipfPlotPdf.Rd | 1 man/ipfProb.Rd | 5 +--- man/ipfTransform.Rd | 3 -- man/ipftest.Rd | 1 man/ipftrain.Rd | 1 src/init.c |only src/ipf.cpp | 2 - 18 files changed, 73 insertions(+), 83 deletions(-)
Title: A Biostatisticians Toolbox for Various Activities, Including
Plotting, Data Cleanup, and Data Analysis
Description: Functions and datasets that can be used for data cleanup (e.g., functions for eliminating all but a few columns from a dataset, selecting a range of columns, quickly editing column names), plotting/presenting data (prism-like reproductions, spearman plots for ordinal data, making colored tables, plotting interactions with quantitative variables), and analyses common to biostatistics (e.g., random forest, multiple comparisons with chi square tests). See the package vignette for a brief introduction to many of the main functions.
Author: Dustin Fife <fife.dustin@gmail.com>
Maintainer: Dustin Fife <fife.dustin@gmail.com>
Diff between fifer versions 1.0 dated 2014-04-02 and 1.1 dated 2017-02-21
fifer-1.0/fifer/inst/doc/code_vignette.R |only fifer-1.0/fifer/inst/doc/makeFakeData.R |only fifer-1.0/fifer/man/string.to.color.Rd |only fifer-1.1/fifer/ChangeLog |only fifer-1.1/fifer/DESCRIPTION | 25 +- fifer-1.1/fifer/MD5 | 159 +++++++++++------- fifer-1.1/fifer/NAMESPACE | 63 ++++++- fifer-1.1/fifer/R/anchored.gradient.R |only fifer-1.1/fifer/R/boxcoxR.R | 11 - fifer-1.1/fifer/R/chisqPostHoc.R | 10 - fifer-1.1/fifer/R/clear.R |only fifer-1.1/fifer/R/colored.table.R |only fifer-1.1/fifer/R/demographics.R | 2 fifer-1.1/fifer/R/densityPlotR.R | 4 fifer-1.1/fifer/R/drop.columns.R |only fifer-1.1/fifer/R/image.interaction.R |only fifer-1.1/fifer/R/last.sample.R |only fifer-1.1/fifer/R/make.formula.R | 19 +- fifer-1.1/fifer/R/make.symmetric.R |only fifer-1.1/fifer/R/meta.data.R |only fifer-1.1/fifer/R/printx.R | 2 fifer-1.1/fifer/R/prism.plots.R | 47 +++-- fifer-1.1/fifer/R/pval.xtable.R |only fifer-1.1/fifer/R/r.crit.R | 6 fifer-1.1/fifer/R/rf.interp.R |only fifer-1.1/fifer/R/rf.pred.R |only fifer-1.1/fifer/R/rf.thresh.R |only fifer-1.1/fifer/R/scaleBreak.R |only fifer-1.1/fifer/R/spearman.plot.R | 7 fifer-1.1/fifer/R/stratified.R | 194 ++++++++-------------- fifer-1.1/fifer/R/string.to.color.R | 76 ++++++++ fifer-1.1/fifer/R/subsetString.R | 20 +- fifer-1.1/fifer/R/unfactor.R |only fifer-1.1/fifer/R/univariate.tests.R | 43 +++- fifer-1.1/fifer/R/z.test.R |only fifer-1.1/fifer/inst/doc/fifer_package.pdf |binary fifer-1.1/fifer/man/SummarizeContinuousDefault.Rd | 34 +-- fifer-1.1/fifer/man/SummarizeFactorDefault.Rd | 38 +--- fifer-1.1/fifer/man/SummarizeVar.Rd | 73 +++----- fifer-1.1/fifer/man/anchored.gradient.Rd |only fifer-1.1/fifer/man/auto.layout.Rd | 26 +- fifer-1.1/fifer/man/boxcoxR.Rd | 41 +--- fifer-1.1/fifer/man/chisq.post.hoc.Rd | 64 +++---- fifer-1.1/fifer/man/clear.Rd |only fifer-1.1/fifer/man/colored.table.Rd |only fifer-1.1/fifer/man/compute.theta.Rd | 14 - fifer-1.1/fifer/man/contents.Rd | 19 +- fifer-1.1/fifer/man/cor2cov.Rd | 36 +--- fifer-1.1/fifer/man/demographics.Rd | 49 +---- fifer-1.1/fifer/man/densityPlotR.Rd | 28 +-- fifer-1.1/fifer/man/drop.columns.Rd |only fifer-1.1/fifer/man/ellipse.Rd | 18 +- fifer-1.1/fifer/man/excelCols.Rd | 22 +- fifer-1.1/fifer/man/excelMatch.Rd | 29 +-- fifer-1.1/fifer/man/fakeMedicalData.Rd | 7 fifer-1.1/fifer/man/get.cols.Rd | 21 +- fifer-1.1/fifer/man/gradient.legend.Rd |only fifer-1.1/fifer/man/hash.Rd | 13 - fifer-1.1/fifer/man/imageInteraction.Rd |only fifer-1.1/fifer/man/intersperse.Rd | 20 +- fifer-1.1/fifer/man/last.sample.Rd |only fifer-1.1/fifer/man/make.formula.Rd | 26 +- fifer-1.1/fifer/man/make.null.Rd | 28 +-- fifer-1.1/fifer/man/make.symmetric.Rd |only fifer-1.1/fifer/man/missing.vals.Rd | 15 - fifer-1.1/fifer/man/mv.rnorm.Rd | 45 ++--- fifer-1.1/fifer/man/number.to.colors.Rd |only fifer-1.1/fifer/man/par1.Rd | 8 fifer-1.1/fifer/man/par2.Rd | 8 fifer-1.1/fifer/man/plot.rfInterp.Rd |only fifer-1.1/fifer/man/plot.rfPred.Rd |only fifer-1.1/fifer/man/plot.rfThresh.Rd |only fifer-1.1/fifer/man/plotSigBars.Rd | 39 +--- fifer-1.1/fifer/man/print.rfInterp.Rd |only fifer-1.1/fifer/man/print.rfPred.Rd |only fifer-1.1/fifer/man/print.rfThresh.Rd |only fifer-1.1/fifer/man/printx.Rd | 20 +- fifer-1.1/fifer/man/prism.plots.Rd | 57 ++---- fifer-1.1/fifer/man/pval.xtable.Rd |only fifer-1.1/fifer/man/r.Rd | 30 +-- fifer-1.1/fifer/man/r.crit.Rd | 20 +- fifer-1.1/fifer/man/random.correlation.Rd | 21 +- fifer-1.1/fifer/man/read.fife.Rd |only fifer-1.1/fifer/man/rfInterp.Rd |only fifer-1.1/fifer/man/rfPred.Rd |only fifer-1.1/fifer/man/rfSensitivity.Rd |only fifer-1.1/fifer/man/rfThresh.Rd |only fifer-1.1/fifer/man/rotateGraph.Rd | 54 ++---- fifer-1.1/fifer/man/roxtemp.Rd | 14 + fifer-1.1/fifer/man/scaleB.Rd | 23 +- fifer-1.1/fifer/man/scaleBreak.Rd |only fifer-1.1/fifer/man/scaleIt.Rd | 22 +- fifer-1.1/fifer/man/spearman.plot.Rd | 39 +--- fifer-1.1/fifer/man/stratified.Rd | 154 +++++------------ fifer-1.1/fifer/man/string.to.colors.Rd |only fifer-1.1/fifer/man/subsetString.Rd | 39 ++-- fifer-1.1/fifer/man/summary.rfPred.Rd |only fifer-1.1/fifer/man/unfactor.Rd |only fifer-1.1/fifer/man/univariate.tests.Rd | 53 ++---- fifer-1.1/fifer/man/write.fife.Rd |only fifer-1.1/fifer/man/xtable.rfInterp.Rd |only fifer-1.1/fifer/man/xtable.rfPred.Rd |only fifer-1.1/fifer/man/z.test.Rd |only fifer-1.1/fifer/vignettes/fifer_package.Rnw | 43 ++++ fifer-1.1/fifer/vignettes/fifer_package.pdf |only 105 files changed, 1024 insertions(+), 974 deletions(-)
Title: Distance Sampling Simulations
Description: Performs distance sampling simulations.It repeatedly generates
instances of a user defined population within a given survey region, generates
realisations of a survey design (currently these must be generated using
Distance software in advance <http://distancesampling.org/>) and simulates
the detection process. The data are then analysed so that the results can
be compared for accuracy and precision across all replications. This will
allow users to select survey designs which will give them the best accuracy
and precision given their expectations about population distribution. Any
uncertainty in population distribution or population parameters can be
included by running the different survey designs for a number of different
population descriptions. An example simulation can be found in the help file for
make.simulation.
Author: Laura Marshall <lhm@st-and.ac.uk>
Maintainer: Laura Marshall <lhm@st-and.ac.uk>
Diff between DSsim versions 1.1.0 dated 2017-01-16 and 1.1.1 dated 2017-02-21
DESCRIPTION | 6 MD5 | 36 ++--- NEWS | 14 ++ R/Class.Constructors.R | 40 +++-- R/LT.Systematic.Design.R | 9 + R/PT.Nested.Design.R | 8 + R/PT.Systematic.Design.R | 8 + R/Region.R | 4 R/Simulation.R | 31 +++- R/Single.Obs.PT.Survey.R | 5 R/generic.functions.R | 3 R/single.simulation.loop.R | 6 R/store.dht.results.R | 2 inst/doc/Investigating_Covariates_and_Truncation.html | 8 - man/make.ddf.analysis.list.Rd | 2 man/make.population.description.Rd | 4 man/make.region.Rd | 25 ++- man/run-methods.Rd | 7 - tests/testthat/test-Covariates.r | 122 ++++++++++++++++++ 19 files changed, 270 insertions(+), 70 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-09-29 0.2
2011-09-07 0.1
More information about rnaturalearthdata at CRAN
Permanent link
Title: Kernel k Nearest Neighbors
Description: Extends the simple k-nearest neighbors algorithm by incorporating numerous kernel functions and a variety of distance metrics. The package takes advantage of 'RcppArmadillo' to speed up the calculation of distances between observations.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between KernelKnn versions 1.0.4 dated 2017-02-10 and 1.0.5 dated 2017-02-21
DESCRIPTION | 12 +- MD5 | 15 +-- NAMESPACE | 3 NEWS.md | 5 + README.md | 3 inst/doc/binary_classification_using_the_ionosphere_data.html | 44 +++++----- inst/doc/image_classification_using_MNIST_CIFAR_data.html | 4 inst/doc/regression_using_the_housing_data.html | 4 src/init.c |only 9 files changed, 48 insertions(+), 42 deletions(-)
Title: Animal Social Network Inference and Permutations for Ecologists
Description: Implements several tools that are used in animal social network analysis. In particular, this package provides the tools to infer groups and generate networks from observation data, perform permutation tests on the data, calculate lagged association rates, and performed multiple regression analysis on social network data.
Author: Damien R. Farine <dfarine@orn.mpg.de>
Maintainer: Damien R. Farine <dfarine@orn.mpg.de>
Diff between asnipe versions 1.1.2 dated 2017-01-21 and 1.1.3 dated 2017-02-21
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- NAMESPACE | 2 ++ R/gmmevents.R | 12 +++++++++--- R/node_permutation.R |only R/test_network_hypothesis.R |only man/asnipe-package.Rd | 4 ++-- 7 files changed, 23 insertions(+), 13 deletions(-)
Title: Tools for Reading SDMX Data and Metadata
Description: Set of classes and methods to read data and metadata documents
exchanged through the Statistical Data and Metadata Exchange (SDMX) framework,
currently focusing on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre],
Matthieu Stigler [ctb],
Eric Persson [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between rsdmx versions 0.5-7 dated 2017-01-24 and 0.5-8 dated 2017-02-21
DESCRIPTION | 8 +- MD5 | 26 +++---- R/Class-SDMXStructureType.R | 3 R/SDMXData-methods.R | 42 +++++++---- R/SDMXGenericData-methods.R | 9 +- R/SDMXStructureType-methods.R | 69 +++++++++--------- R/readSDMX.R | 156 ++++++++++++++++++++++++------------------ R/rsdmx.R | 4 - README.md | 4 - inst/doc/quickstart.R | 146 +++++++++++++++++++-------------------- inst/doc/quickstart.Rmd | 28 +++---- inst/doc/quickstart.html | 111 +---------------------------- man/rsdmx.Rd | 4 - vignettes/quickstart.Rmd | 28 +++---- 14 files changed, 290 insertions(+), 348 deletions(-)
Title: Calculate Indices and Theoretical Properties of Protein
Sequences
Description: Calculate physicochemical properties and indices from amino-acid
sequences of peptides and proteins. Include also the option to read and plot
output files from the 'GROMACS' molecular dynamics package.
Author: Daniel Osorio, Paola Rondon-Villarreal and Rodrigo Torres.
Maintainer: Daniel Osorio <dcosorioh@unal.edu.co>
Diff between Peptides versions 1.1.2 dated 2017-01-16 and 1.2.1 dated 2017-02-21
Peptides-1.1.2/Peptides/R/kidera.R |only Peptides-1.1.2/Peptides/data/Kfactors.RData |only Peptides-1.1.2/Peptides/data/pKscales.RData |only Peptides-1.1.2/Peptides/man/Kfactors.Rd |only Peptides-1.1.2/Peptides/man/Peptides-package.Rd |only Peptides-1.1.2/Peptides/man/h.Rd |only Peptides-1.1.2/Peptides/man/kidera.Rd |only Peptides-1.1.2/Peptides/man/pKscales.Rd |only Peptides-1.2.1/Peptides/DESCRIPTION | 13 - Peptides-1.2.1/Peptides/MD5 | 95 ++++++---- Peptides-1.2.1/Peptides/NAMESPACE | 28 ++- Peptides-1.2.1/Peptides/NEWS | 4 Peptides-1.2.1/Peptides/R/aacomp.R | 57 +++++- Peptides-1.2.1/Peptides/R/aindex.R | 20 +- Peptides-1.2.1/Peptides/R/autocorrelation.R |only Peptides-1.2.1/Peptides/R/autocovariance.R |only Peptides-1.2.1/Peptides/R/boman.R | 25 ++ Peptides-1.2.1/Peptides/R/charge.R | 81 ++++++++- Peptides-1.2.1/Peptides/R/crosscovariance.R |only Peptides-1.2.1/Peptides/R/crucianiProperties.R |only Peptides-1.2.1/Peptides/R/data-CP.R |only Peptides-1.2.1/Peptides/R/data-H.R |only Peptides-1.2.1/Peptides/R/data-K.R |only Peptides-1.2.1/Peptides/R/data-pK.R |only Peptides-1.2.1/Peptides/R/data-pepdata.R |only Peptides-1.2.1/Peptides/R/hmoment.R | 32 ++- Peptides-1.2.1/Peptides/R/hydrophobicity.R | 185 +++++++++++++++++++- Peptides-1.2.1/Peptides/R/instaindex.R | 22 +- Peptides-1.2.1/Peptides/R/kideraFactors.R |only Peptides-1.2.1/Peptides/R/lengthpep.R | 17 + Peptides-1.2.1/Peptides/R/membpos.R | 42 +++- Peptides-1.2.1/Peptides/R/mw.R | 21 +- Peptides-1.2.1/Peptides/R/pI.R | 46 ++++- Peptides-1.2.1/Peptides/R/plot.xvg.R | 75 ++++++-- Peptides-1.2.1/Peptides/R/read.xvg.R | 57 ++++-- Peptides-1.2.1/Peptides/README.md | 26 +- Peptides-1.2.1/Peptides/data/CP.RData |only Peptides-1.2.1/Peptides/data/K.RData |only Peptides-1.2.1/Peptides/data/datalist | 5 Peptides-1.2.1/Peptides/data/pK.RData |only Peptides-1.2.1/Peptides/inst/CITATION |only Peptides-1.2.1/Peptides/man/CP.Rd |only Peptides-1.2.1/Peptides/man/H.Rd |only Peptides-1.2.1/Peptides/man/K.Rd |only Peptides-1.2.1/Peptides/man/aacomp.Rd | 56 +++--- Peptides-1.2.1/Peptides/man/aindex.Rd | 33 +-- Peptides-1.2.1/Peptides/man/autoCorrelation.Rd |only Peptides-1.2.1/Peptides/man/autoCovariance.Rd |only Peptides-1.2.1/Peptides/man/boman.Rd | 35 ++- Peptides-1.2.1/Peptides/man/charge.Rd | 67 +++---- Peptides-1.2.1/Peptides/man/crossCovariance.Rd |only Peptides-1.2.1/Peptides/man/crucianiProperties.Rd |only Peptides-1.2.1/Peptides/man/hmoment.Rd | 44 ++-- Peptides-1.2.1/Peptides/man/hydrophobicity.Rd | 198 ++++++++++------------ Peptides-1.2.1/Peptides/man/instaindex.Rd | 26 +- Peptides-1.2.1/Peptides/man/kideraFactors.Rd |only Peptides-1.2.1/Peptides/man/lengthpep.Rd | 26 +- Peptides-1.2.1/Peptides/man/membpos.Rd | 39 ++-- Peptides-1.2.1/Peptides/man/mw.Rd | 37 ++-- Peptides-1.2.1/Peptides/man/pI.Rd | 26 +- Peptides-1.2.1/Peptides/man/pK.Rd |only Peptides-1.2.1/Peptides/man/pepdata.Rd | 69 +++---- Peptides-1.2.1/Peptides/man/plot.xvg.Rd | 48 ++--- Peptides-1.2.1/Peptides/man/read.xvg.Rd | 34 +-- 64 files changed, 1048 insertions(+), 541 deletions(-)
Title: Spatial Dependence: Weighting Schemes, Statistics and Models
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by distance and
tessellations, for summarizing these objects, and for permitting their
use in spatial data analysis, including regional aggregation by minimum
spanning tree; a collection of tests for spatial autocorrelation,
including global Moran's I, APLE, Geary's C, Hubert/Mantel general cross
product statistic, Empirical Bayes estimates and Assunção/Reis Index,
Getis/Ord G and multicoloured join count statistics, local Moran's I
and Getis/Ord G, saddlepoint approximations and exact tests for global
and local Moran's I; and functions for estimating spatial simultaneous
autoregressive (SAR) lag and error models, impact measures for lag
models, weighted and unweighted SAR and CAR spatial regression models,
semi-parametric and Moran eigenvector spatial filtering, GM SAR error
models, and generalized spatial two stage least squares models.
Author: Roger Bivand [cre, aut],
Micah Altman [ctb],
Luc Anselin [ctb],
Renato Assunção [ctb],
Olaf Berke [ctb],
Andrew Bernat [ctb],
Guillaume Blanchet [ctb],
Eric Blankmeyer [ctb],
Marilia Carvalho [ctb],
Bjarke Christensen [ctb],
Yongwan Chun [ctb],
Carsten Dormann [ctb],
Stéphane Dray [ctb],
Virgilio Gómez-Rubio [ctb],
Martin Gubri [ctb],
Rein Halbersma [ctb],
Elias Krainski [ctb],
Pierre Legendre [ctb],
Nicholas Lewin-Koh [ctb],
Hongfei Li [ctb],
Jielai Ma [ctb],
Abhirup Mallik [ctb, trl],
Giovanni Millo [ctb],
Werner Mueller [ctb],
Hisaji Ono [ctb],
Pedro Peres-Neto [ctb],
Gianfranco Piras [ctb],
Markus Reder [ctb],
Michael Tiefelsdorf [ctb],
Danlin Yu [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spdep versions 0.6-9 dated 2017-01-09 and 0.6-10 dated 2017-02-21
ChangeLog | 31 +++++++ DESCRIPTION | 10 +- MD5 | 28 +++--- NAMESPACE | 5 - R/impacts.R | 10 -- R/mess.R | 176 ++++++++++++++++++++++++++++++++++++++---- R/nb2mat.R | 3 inst/ChangeLog | 31 +++++++ inst/doc/CO69.pdf |binary inst/doc/SpatialFiltering.pdf |binary inst/doc/nb.pdf |binary inst/doc/sids.pdf |binary man/impacts.sarlm.Rd | 6 + man/invIrM.Rd | 3 man/lagmess.Rd | 15 ++- 15 files changed, 267 insertions(+), 51 deletions(-)
Title: Acquisition and Processing of NASA Soil Moisture Active-Passive
(SMAP) Data
Description:
Facilitates programmatic access to NASA Soil Moisture Active
Passive (SMAP) data with R. It includes functions to search for, acquire,
and extract SMAP data.
Author: Maxwell Joseph [aut, cre],
Matthew Oakley [aut],
Zachary Schira [aut]
Maintainer: Maxwell Joseph <maxwell.b.joseph@colorado.edu>
Diff between smapr versions 0.0.1 dated 2016-10-05 and 0.1.0 dated 2017-02-21
smapr-0.0.1/smapr/build |only smapr-0.0.1/smapr/inst/doc |only smapr-0.0.1/smapr/inst/img/unnamed-chunk-6-1.png |only smapr-0.0.1/smapr/inst/img/unnamed-chunk-7-1.png |only smapr-0.0.1/smapr/vignettes |only smapr-0.1.0/smapr/DESCRIPTION | 13 smapr-0.1.0/smapr/MD5 | 42 - smapr-0.1.0/smapr/NAMESPACE | 2 smapr-0.1.0/smapr/NEWS.md | 5 smapr-0.1.0/smapr/R/download_smap.R | 19 smapr-0.1.0/smapr/R/find_smap.R | 87 +-- smapr-0.1.0/smapr/R/zzz.R | 25 + smapr-0.1.0/smapr/README.md | 401 ++++++++++-------- smapr-0.1.0/smapr/inst/img/unnamed-chunk-8-1.png |binary smapr-0.1.0/smapr/man/download_smap.Rd | 10 smapr-0.1.0/smapr/man/extract_smap.Rd | 1 smapr-0.1.0/smapr/man/find_smap.Rd | 11 smapr-0.1.0/smapr/man/list_smap.Rd | 1 smapr-0.1.0/smapr/man/smapr-package.Rd | 1 smapr-0.1.0/smapr/tests/testthat/test-download_smap.R | 11 smapr-0.1.0/smapr/tests/testthat/test-extract_smap.R | 21 smapr-0.1.0/smapr/tests/testthat/test-find_smap.R | 23 - smapr-0.1.0/smapr/tests/testthat/test-list_smap.R | 6 smapr-0.1.0/smapr/tests/testthat/test-zzz.R |only 24 files changed, 396 insertions(+), 283 deletions(-)
Title: Fluid Use of 'dplyr'
Description: Methods to get a grip on working with remote 'tbl' sources ('SQL' databases,
'sparklyr' 'Spark' 2.0.0 and above) through 'dplyr'. Adds convenience functions to make such tasks more like
working with an in-memory 'data.frame'. Results do depend on which 'dplyr' data service you use.
Author: John Mount, Nina Zumel
Maintainer: John Mount <jmount@win-vector.com>
Diff between replyr versions 0.2.1 dated 2017-01-21 and 0.2.3 dated 2017-02-21
replyr-0.2.1/replyr/man/let.Rd |only replyr-0.2.1/replyr/man/restrictToNameAssignments.Rd |only replyr-0.2.3/replyr/DESCRIPTION | 19 - replyr-0.2.3/replyr/MD5 | 117 +++++----- replyr-0.2.3/replyr/NAMESPACE | 15 + replyr-0.2.3/replyr/NEWS.md | 12 + replyr-0.2.3/replyr/R/bind_rows.R | 13 - replyr-0.2.3/replyr/R/checkRank.R | 4 replyr-0.2.3/replyr/R/coalesce.R |only replyr-0.2.3/replyr/R/copyToFrom.R | 2 replyr-0.2.3/replyr/R/land.R | 14 - replyr-0.2.3/replyr/R/let.R | 220 ------------------- replyr-0.2.3/replyr/R/nrow.R | 4 replyr-0.2.3/replyr/R/renameRestrictCols.R | 4 replyr-0.2.3/replyr/R/replyr.R | 45 +++ replyr-0.2.3/replyr/R/serviceName.R | 2 replyr-0.2.3/replyr/R/summary.R | 2 replyr-0.2.3/replyr/README.md | 46 +-- replyr-0.2.3/replyr/build/vignette.rds |binary replyr-0.2.3/replyr/inst/doc/BizarroPipe.R |only replyr-0.2.3/replyr/inst/doc/BizarroPipe.Rmd |only replyr-0.2.3/replyr/inst/doc/BizarroPipe.html |only replyr-0.2.3/replyr/inst/doc/NArm.Rmd | 2 replyr-0.2.3/replyr/inst/doc/NArm.html | 12 - replyr-0.2.3/replyr/inst/doc/ParametricExample.R | 15 - replyr-0.2.3/replyr/inst/doc/ParametricExample.Rmd | 41 +-- replyr-0.2.3/replyr/inst/doc/ParametricExample.html | 47 ++-- replyr-0.2.3/replyr/inst/doc/letExample.Rmd | 4 replyr-0.2.3/replyr/inst/doc/letExample.html | 15 - replyr-0.2.3/replyr/inst/doc/replyr.R | 4 replyr-0.2.3/replyr/inst/doc/replyr.Rmd | 22 - replyr-0.2.3/replyr/inst/doc/replyr.html | 34 +- replyr-0.2.3/replyr/man/gapply.Rd | 1 replyr-0.2.3/replyr/man/grapes-land-grapes.Rd | 9 replyr-0.2.3/replyr/man/letp.Rd | 1 replyr-0.2.3/replyr/man/reexports.Rd |only replyr-0.2.3/replyr/man/replyr.Rd | 10 replyr-0.2.3/replyr/man/replyr_arrange.Rd | 1 replyr-0.2.3/replyr/man/replyr_bind_rows.Rd | 3 replyr-0.2.3/replyr/man/replyr_check_ranks.Rd | 1 replyr-0.2.3/replyr/man/replyr_coalesce.Rd |only replyr-0.2.3/replyr/man/replyr_colClasses.Rd | 1 replyr-0.2.3/replyr/man/replyr_copy_from.Rd | 1 replyr-0.2.3/replyr/man/replyr_copy_to.Rd | 1 replyr-0.2.3/replyr/man/replyr_dataServiceName.Rd | 1 replyr-0.2.3/replyr/man/replyr_dim.Rd | 1 replyr-0.2.3/replyr/man/replyr_filter.Rd | 1 replyr-0.2.3/replyr/man/replyr_inTest.Rd | 1 replyr-0.2.3/replyr/man/replyr_mapRestrictCols.Rd | 1 replyr-0.2.3/replyr/man/replyr_nrow.Rd | 1 replyr-0.2.3/replyr/man/replyr_quantile.Rd | 1 replyr-0.2.3/replyr/man/replyr_quantilec.Rd | 1 replyr-0.2.3/replyr/man/replyr_rename.Rd | 1 replyr-0.2.3/replyr/man/replyr_split.Rd | 1 replyr-0.2.3/replyr/man/replyr_str.Rd | 1 replyr-0.2.3/replyr/man/replyr_summary.Rd | 1 replyr-0.2.3/replyr/man/replyr_testCols.Rd | 1 replyr-0.2.3/replyr/man/replyr_uniqueValues.Rd | 1 replyr-0.2.3/replyr/vignettes/BizarroPipe.Rmd |only replyr-0.2.3/replyr/vignettes/BizarroPipe.jpg |only replyr-0.2.3/replyr/vignettes/NArm.Rmd | 2 replyr-0.2.3/replyr/vignettes/ParametricExample.Rmd | 41 +-- replyr-0.2.3/replyr/vignettes/Pipe2.jpg |only replyr-0.2.3/replyr/vignettes/letExample.Rmd | 4 replyr-0.2.3/replyr/vignettes/replyr.Rmd | 22 - 65 files changed, 339 insertions(+), 488 deletions(-)
Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10901-8 or Nankodo, ISBN: 978-4-524-26158-1), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>
Diff between RcmdrPlugin.EZR versions 1.34 dated 2017-01-18 and 1.35 dated 2017-02-21
DESCRIPTION | 11 ++-- MD5 | 16 +++--- NEWS | 6 ++ R/EZR.R | 123 ++++++++++++++++++++++++++++++++++++++++------------- inst/CHANGES | 6 ++ inst/doc/EZR.htm | 6 +- inst/doc/EZR.pdf |binary man/EZR.Rd | 6 +- man/rmean.table.Rd | 9 ++- 9 files changed, 133 insertions(+), 50 deletions(-)
More information about RcmdrPlugin.EZR at CRAN
Permanent link
Title: Orthogonalizing EM
Description: Solves penalized least squares problems using the orthogonalizing EM algorithm of Xiong et al. (2016) <doi:10.1080/00401706.2015.1054436>. The main fitting function is oem() and the functions cv.oem() and xval.oem() are for cross validation, the latter being an accelerated cross validation function for linear models. The big.oem() function allows for out of memory fitting.
Author: Bin Dai [aut],
Jared Huling [aut, cre],
Yixuan Qiu [ctb]
Maintainer: Jared Huling <jaredhuling@gmail.com>
Diff between oem versions 2.0.3 dated 2016-10-26 and 2.0.4 dated 2017-02-21
oem-2.0.3/oem/src/Rutils.cpp |only oem-2.0.3/oem/src/Rutils.h |only oem-2.0.4/oem/DESCRIPTION | 8 ++--- oem-2.0.4/oem/MD5 | 37 +++++++++++++---------- oem-2.0.4/oem/NAMESPACE | 2 - oem-2.0.4/oem/R/big_oem.R | 1 oem-2.0.4/oem/R/oem.R | 14 +++++---- oem-2.0.4/oem/R/oem_xtx.R | 1 oem-2.0.4/oem/R/oem_xval.R | 1 oem-2.0.4/oem/README.md | 6 +++ oem-2.0.4/oem/build/vignette.rds |binary oem-2.0.4/oem/inst/doc/oem_vignette.html | 48 +++++++++++++++---------------- oem-2.0.4/oem/man/oem.Rd | 12 ++++--- oem-2.0.4/oem/src/Linalg |only oem-2.0.4/oem/src/oem.cpp | 18 +++++------ oem-2.0.4/oem/src/oem_construction.h |only oem-2.0.4/oem/src/oem_dense.cpp | 5 +-- oem-2.0.4/oem/src/oem_dense.h | 31 ++++++++++++++++++-- oem-2.0.4/oem/src/oem_init.c |only oem-2.0.4/oem/src/utils.cpp | 2 - 20 files changed, 113 insertions(+), 73 deletions(-)
Title: Natural Language Processing Infrastructure
Description: Basic classes and methods for Natural Language Processing.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between NLP versions 0.1-9 dated 2016-02-18 and 0.1-10 dated 2017-02-21
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/annotation.R | 4 ++-- R/annotators.R | 14 +++++++------- R/aptd.R | 4 ++-- R/datetime.R | 6 +++--- R/language.R | 4 ++-- R/sysdata.rda |binary R/ttd.R | 2 +- man/tagsets.Rd | 7 +++++-- 10 files changed, 35 insertions(+), 32 deletions(-)
Title: Mixtures of von Mises-Fisher Distributions
Description: Fit and simulate mixtures of von Mises-Fisher distributions.
Author: Kurt Hornik [aut, cre],
Bettina Grün [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between movMF versions 0.2-0 dated 2014-07-03 and 0.2-1 dated 2017-02-21
DESCRIPTION | 12 +-- MD5 | 18 ++--- build/vignette.rds |binary inst/CITATION | 30 +++----- inst/NEWS.Rd | 14 +++ inst/doc/movMF.R | 41 +++++------ inst/doc/movMF.Rnw | 4 + inst/doc/movMF.pdf |binary vignettes/movMF.Rnw | 4 + vignettes/vMF.bib | 183 +++++++++++++++++++++++++++++++++++++++++++++++++--- 10 files changed, 243 insertions(+), 63 deletions(-)
Title: A Quantified Implementation of the Kraljic Matrix
Description: Implements a quantified approach to the Kraljic Matrix (Kraljic, 1983, <https://hbr.org/1983/09/purchasing-must-become-supply-management>)
for strategically analyzing a firm’s purchasing portfolio. It combines multi-objective decision analysis to measure purchasing characteristics and
uses this information to place products and services within the Kraljic Matrix.
Author: Bradley Boehmke [aut, cre],
Robert Montgomery [ctb],
Ogden Jeffrey [ctb],
Jason Freels [ctb]
Maintainer: Bradley Boehmke <bradleyboehmke@gmail.com>
Diff between KraljicMatrix versions 0.1.0 dated 2016-12-15 and 0.1.1 dated 2017-02-21
DESCRIPTION | 20 ++++++++++++-------- MD5 | 12 ++++++------ R/quadrant-assignment-functions.R | 2 +- R/single-attribute-value-functions.R | 4 ++-- inst/doc/kraljic.html | 24 ++++++++++++------------ man/SAVF_plot_rho_error.Rd | 3 ++- man/SAVF_preferred_rho.Rd | 3 ++- 7 files changed, 37 insertions(+), 31 deletions(-)
Title: The 'jamovi' Analyses
Description: 'jamovi' is a rich graphical statistics program providing many
common statistical tests such as t-tests, ANOVAs, correlation matrices,
proportion tests, contingency tables, etc (see <https://www.jamovi.org> for
more information). This package makes all of the basic 'jamovi' analyses
available to the R user.
Author: Jonathon Love, Damian Dropmann, Ravi Selker
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmv versions 0.7.0 dated 2017-02-13 and 0.7.0.3 dated 2017-02-21
DESCRIPTION | 8 MD5 | 78 +++++--- NAMESPACE | 4 R/ancova.b.R |only R/ancova.h.R |only R/anova.b.R | 431 ++++++++++++++++++++++++++++++++---------------- R/anova.h.R | 376 ++++++++++++++++++----------------------- R/anovanp.h.R | 2 R/anovarm.b.R | 85 +++------ R/anovarm.h.R | 187 +++++++++++--------- R/anovarmnp.b.R | 48 +++++ R/anovarmnp.h.R | 12 + R/conttables.h.R | 13 + R/conttablespaired.h.R | 7 R/corrmatrix.h.R | 5 R/descriptives.h.R | 4 R/linreg.b.R |only R/linreg.h.R |only R/loglinear.b.R |only R/loglinear.h.R |only R/mancova.b.R |only R/mancova.h.R |only R/proptest2.h.R | 7 R/proptestn.h.R | 23 +- R/reliability.h.R | 5 R/ttestis.h.R | 5 R/ttestones.h.R | 5 R/ttestps.h.R | 12 + man/ancova.Rd |only man/anova.Rd | 80 ++++---- man/anovaNP.Rd | 2 man/anovaRM.Rd | 59 ++++-- man/anovaRMNP.Rd | 7 man/contTables.Rd | 9 - man/contTablesPaired.Rd | 7 man/corrMatrix.Rd | 5 man/descriptives.Rd | 4 man/linReg.Rd |only man/logLinear.Rd |only man/mancova.Rd |only man/propTest2.Rd | 7 man/propTestN.Rd | 15 + man/reliability.Rd | 5 man/ttestIS.Rd | 5 man/ttestOneS.Rd | 5 man/ttestPS.Rd | 12 + 46 files changed, 912 insertions(+), 627 deletions(-)
Title: Hidden State Speciation and Extinction
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification.
Author: Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>
Diff between hisse versions 1.8 dated 2016-08-25 and 1.8.1 dated 2017-02-21
hisse-1.8.1/hisse/DESCRIPTION | 8 ++-- hisse-1.8.1/hisse/MD5 | 28 +++++++------- hisse-1.8.1/hisse/NAMESPACE | 2 - hisse-1.8.1/hisse/R/hisse.R | 5 +- hisse-1.8.1/hisse/R/hisseNull4.R | 2 - hisse-1.8.1/hisse/R/marginRecon.R | 4 +- hisse-1.8.1/hisse/R/supportRegion.R | 42 ++++++++++++++------- hisse-1.8.1/hisse/R/transMat.R | 6 +-- hisse-1.8.1/hisse/build/vignette.rds |binary hisse-1.8.1/hisse/inst/doc/hisse-vignette.R | 2 - hisse-1.8.1/hisse/inst/doc/hisse-vignette.Rmd | 4 +- hisse-1.8.1/hisse/inst/doc/hisse-vignette.html | 49 +++++++++---------------- hisse-1.8.1/hisse/man/hisse.Rd | 4 +- hisse-1.8.1/hisse/man/hisseNull4.Rd | 4 +- hisse-1.8.1/hisse/src/init.c |only hisse-1.8/hisse/README.md |only 16 files changed, 81 insertions(+), 79 deletions(-)
Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Description: Package for Bayesian Model Averaging in linear models and
generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
mixture of g-priors from Liang et al (2008)
<DOI:10.1198/016214507000001337>
for linear models or mixtures of g-priors in GLMs of Li and Clyde (2015)
<http://arxiv.org/abs/1503.06913>. Other model
selection criteria include AIC, BIC and Empirical Bayes estimates of g.
Sampling probabilities may be updated based on the sampled models
using Sampling w/out Replacement or an efficient MCMC algorithm
samples models using the BAS tree structure as an efficient hash table.
Uniform priors over all models or beta-binomial prior distributions on
model size are allowed, and for large p truncated priors on the model
space may be used. The user may force variables to always be included.
Details behind the sampling algorithm are provided in
Clyde, Ghosh and Littman (2010) <DOI:10.1198/jcgs.2010.09049>.
This material is based upon work supported by the National Science
Foundation under Grant DMS-1106891. Any opinions, findings, and
conclusions or recommendations expressed in this material are those of
the author(s) and do not necessarily reflect the views of the
National Science Foundation.
Author: Merlise Clyde [aut, cre, cph],
Michael Littman [ctb],
Quanli Wang [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb]
Maintainer: Merlise Clyde <clyde@stat.duke.edu>
Diff between BAS versions 1.4.2 dated 2016-10-13 and 1.4.3 dated 2017-02-21
BAS-1.4.2/BAS/R/ch1f1.R |only BAS-1.4.2/BAS/R/gglm.lpy.logit.R |only BAS-1.4.3/BAS/DESCRIPTION | 11 BAS-1.4.3/BAS/MD5 | 85 ++---- BAS-1.4.3/BAS/NAMESPACE | 16 - BAS-1.4.3/BAS/NEWS.md | 16 + BAS-1.4.3/BAS/R/as.matrix.R | 14 BAS-1.4.3/BAS/R/bas.R | 49 +-- BAS-1.4.3/BAS/R/bas.gglm.R | 126 +++++--- BAS-1.4.3/BAS/R/cch.R | 2 BAS-1.4.3/BAS/R/coefficients.R | 10 BAS-1.4.3/BAS/R/diagnostics.R | 16 - BAS-1.4.3/BAS/R/glm-fit.R | 4 BAS-1.4.3/BAS/R/hypergeometric1F1.R | 3 BAS-1.4.3/BAS/R/hypergeometric2F1.R | 4 BAS-1.4.3/BAS/R/plot.bma.R | 26 + BAS-1.4.3/BAS/R/predict.bma.R | 10 BAS-1.4.3/BAS/R/summary.bma.R | 11 BAS-1.4.3/BAS/R/update.bma.R | 5 BAS-1.4.3/BAS/build/vignette.rds |binary BAS-1.4.3/BAS/inst/doc/BAS-vignette.R | 75 +++-- BAS-1.4.3/BAS/inst/doc/BAS-vignette.Rmd | 95 ++++++ BAS-1.4.3/BAS/inst/doc/BAS-vignette.html | 439 +++++++++++++++++++++++++++---- BAS-1.4.3/BAS/man/bas.Rd | 10 BAS-1.4.3/BAS/man/bas.glm.Rd | 14 BAS-1.4.3/BAS/man/bin2int.Rd | 3 BAS-1.4.3/BAS/man/plot.bma.Rd | 3 BAS-1.4.3/BAS/man/summary.bma.Rd | 2 BAS-1.4.3/BAS/src/bayesglm.c | 1 BAS-1.4.3/BAS/src/bayesreg.c | 15 - BAS-1.4.3/BAS/src/deterministic.c | 2 BAS-1.4.3/BAS/src/family.c | 28 + BAS-1.4.3/BAS/src/gglm.h | 20 - BAS-1.4.3/BAS/src/glm_deterministic.c | 1 BAS-1.4.3/BAS/src/glm_mcmc.c | 4 BAS-1.4.3/BAS/src/glm_mcmcbas.c | 2 BAS-1.4.3/BAS/src/hypergeoF.c | 1 BAS-1.4.3/BAS/src/hypergeometric1F1.c | 3 BAS-1.4.3/BAS/src/init.c |only BAS-1.4.3/BAS/src/mcmc.c | 9 BAS-1.4.3/BAS/src/mcmc_new.c | 6 BAS-1.4.3/BAS/src/mcmcbas.c | 1 BAS-1.4.3/BAS/src/sampleworep.c | 3 BAS-1.4.3/BAS/src/sampleworep_new.c | 4 BAS-1.4.3/BAS/vignettes/BAS-vignette.Rmd | 95 ++++++ 45 files changed, 931 insertions(+), 313 deletions(-)
Title: Adaptive Management Model Manager
Description: Helps enable adaptive management by codifying knowledge in the
form of models generated from numerous analyses and data sets. Facilitates
this process by storing all models and data sets in a single object that can
be updated and saved, thus tracking changes in knowledge through time. A shiny
application called AM Model Manager (modelMgr()) enables the use of these
functions via a GUI.
Author: Jon Katz <jonkatz4@gmail.com>, Therese Donovan <tdonovan@uvm.edu>
Maintainer: Jon Katz <jonkatz4@gmail.com>
Diff between AMModels versions 0.1.1 dated 2017-02-01 and 0.1.2 dated 2017-02-21
DESCRIPTION | 12 ++++++------ MD5 | 5 +++-- inst/doc |only inst/modelMgr/ui.R | 2 +- 4 files changed, 10 insertions(+), 9 deletions(-)