Tue, 21 Feb 2017

Package WARN updated to version 1.2-2 with previous version 1.2-1 dated 2016-06-26

Title: Weaning Age Reconstruction with Nitrogen Isotope Analysis
Description: This estimates precise weaning ages for a given skeletal population by analyzing the stable nitrogen isotope ratios of them. Bone collagen turnover rates estimated anew and the approximate Bayesian computation (ABC) were adopted in this package.
Author: Takumi Tsutaya
Maintainer: Takumi Tsutaya <tsutayatakumi@gmail.com>

Diff between WARN versions 1.2-1 dated 2016-06-26 and 1.2-2 dated 2017-02-21

 ChangeLog           |    4 ++++
 DESCRIPTION         |    8 ++++----
 MD5                 |   10 +++++-----
 NEWS                |    4 ++++
 R/warn.R            |   15 +++++++++++++++
 man/WARN-package.Rd |    4 ++--
 6 files changed, 34 insertions(+), 11 deletions(-)

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Package tcgsaseq updated to version 1.4.1 with previous version 1.3.1 dated 2016-11-24

Title: Time-Course Gene Set Analysis for RNA-Seq Data
Description: Gene set analysis of longitudinal RNA-seq data with variance component score test accounting for data heteroscedasticity through precision weights. Method is detailed in: Agniel D, Hejblum BP (2016) Variance component score test for time-course gene set analysis of longitudinal RNA-seq data <arXiv:1605.02351>.
Author: Denis Agniel [aut], Boris P. Hejblum [aut, cre]
Maintainer: Boris P. Hejblum <boris.hejblum@u-bordeaux.fr>

Diff between tcgsaseq versions 1.3.1 dated 2016-11-24 and 1.4.1 dated 2017-02-21

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 tcgsaseq-1.4.1/tcgsaseq/DESCRIPTION                          |   14 
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 tcgsaseq-1.4.1/tcgsaseq/MD5                                  |   60 
 tcgsaseq-1.4.1/tcgsaseq/NEWS                                 |    3 
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 tcgsaseq-1.4.1/tcgsaseq/R/compute_sim_voomlike_genewise.R    |  438 +++----
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 tcgsaseq-1.4.1/tcgsaseq/R/tcgsa_seq.R                        |    4 
 tcgsaseq-1.4.1/tcgsaseq/R/vc_score.R                         |   25 
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Package mbbefd updated to version 0.8.8 with previous version 0.8.7 dated 2016-12-30

Title: Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and Destruction Rate Modelling
Description: Distributions that are typically used for exposure rating in general insurance, in particular to price reinsurance contracts. The vignettes show code snippets to fit the distribution to empirical data.
Author: Giorgio Spedicato [aut, cre], Christophe Dutang [aut], Markus Gesmann [ctb]
Maintainer: Giorgio Spedicato <spedicato_giorgio@yahoo.it>

Diff between mbbefd versions 0.8.7 dated 2016-12-30 and 0.8.8 dated 2017-02-21

 ChangeLog                           |    2 ++
 DESCRIPTION                         |    6 +++---
 MD5                                 |   15 ++++++++-------
 NAMESPACE                           |    2 +-
 NEWS                                |    4 ++--
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 9 files changed, 18 insertions(+), 15 deletions(-)

More information about mbbefd at CRAN
Permanent link

Package copCAR updated to version 2.0-1 with previous version 2.0 dated 2017-02-16

Title: Fitting the copCAR Regression Model for Discrete Areal Data
Description: Provides tools for fitting the copCAR (Hughes, 2015) <DOI:10.1080/10618600.2014.948178> regression model for discrete areal data. Three types of estimation are supported (continuous extension, composite marginal likelihood, and distributional transform), for three types of outcomes (Bernoulli, negative binomial, and Poisson).
Author: Emily Goren <emily.goren@gmail.com> and John Hughes <jphughesjr@gmail.com>
Maintainer: John Hughes <jphughesjr@gmail.com>

Diff between copCAR versions 2.0 dated 2017-02-16 and 2.0-1 dated 2017-02-21

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Package leaflet updated to version 1.1.0 with previous version 1.0.1 dated 2016-02-27

Title: Create Interactive Web Maps with the JavaScript 'Leaflet' Library
Description: Create and customize interactive maps using the 'Leaflet' JavaScript library and the 'htmlwidgets' package. These maps can be used directly from the R console, from 'RStudio', in Shiny apps and R Markdown documents.
Author: Joe Cheng [aut, cre], Bhaskar Karambelkar [aut], Yihui Xie [aut], Hadley Wickham [ctb], Kenton Russell [ctb], Kent Johnson [ctb], jQuery Foundation and contributors [ctb, cph] (jQuery library), Vladimir Agafonkin [ctb, cph] (Leaflet library), CloudMade [cph] (Leaflet library), Leaflet contributors [ctb] (Leaflet library), Leaflet Providers contributors [ctb, cph] (Leaflet Providers plugin), Brandon Copeland [ctb, cph] (leaflet-measure plugin), Jacob Toye [ctb, cph] (Leaflet.label plugin), Joerg Dietrich [ctb, cph] (Leaflet.Terminator plugin), Benjamin Becquet [ctb, cph] (Leaflet.MagnifyingGlass plugin), Norkart AS [ctb, cph] (Leaflet.MiniMap plugin), L. Voogdt [ctb, cph] (Leaflet.awesome-markers plugin), Daniel Montague [ctb, cph] (Leaflet.EasyButton plugin), Kartena AB [ctb, cph] (Proj4Leaflet plugin), Robert Kajic [ctb, cph] (leaflet-locationfilter plugin), Mapbox [ctb, cph] (leaflet-omnivore plugin), Michael Bostock [ctb, cph] (topojson), RStudio [cph]
Maintainer: Joe Cheng <joe@rstudio.com>

Diff between leaflet versions 1.0.1 dated 2016-02-27 and 1.1.0 dated 2017-02-21

 leaflet-1.0.1/leaflet/LICENSE                                                                                  |only
 leaflet-1.0.1/leaflet/tests/testit/test-normalize.R                                                            |only
 leaflet-1.1.0/leaflet/DESCRIPTION                                                                              |   55 
 leaflet-1.1.0/leaflet/LICENSE.note                                                                             |only
 leaflet-1.1.0/leaflet/MD5                                                                                      |  245 
 leaflet-1.1.0/leaflet/NAMESPACE                                                                                |   80 
 leaflet-1.1.0/leaflet/NEWS                                                                                     |   82 
 leaflet-1.1.0/leaflet/R/colors.R                                                                               |  138 
 leaflet-1.1.0/leaflet/R/controls.R                                                                             |    6 
 leaflet-1.1.0/leaflet/R/data.R                                                                                 |   33 
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 leaflet-1.1.0/leaflet/R/layers.R                                                                               |  353 -
 leaflet-1.1.0/leaflet/R/leaflet.R                                                                              |  157 
 leaflet-1.1.0/leaflet/R/legacy.R                                                                               |    4 
 leaflet-1.1.0/leaflet/R/legend.R                                                                               |    6 
 leaflet-1.1.0/leaflet/R/methods.R                                                                              |    9 
 leaflet-1.1.0/leaflet/R/normalize-SharedData.R                                                                 |only
 leaflet-1.1.0/leaflet/R/normalize-map.R                                                                        |only
 leaflet-1.1.0/leaflet/R/normalize-sf.R                                                                         |only
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 leaflet-1.1.0/leaflet/R/package.R                                                                              |    4 
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 leaflet-1.1.0/leaflet/R/plugin-easybutton.R                                                                    |only
 leaflet-1.1.0/leaflet/R/plugin-graticule.R                                                                     |only
 leaflet-1.1.0/leaflet/R/plugin-measure.R                                                                       |only
 leaflet-1.1.0/leaflet/R/plugin-minimap.R                                                                       |only
 leaflet-1.1.0/leaflet/R/plugin-omnivore.R                                                                      |   16 
 leaflet-1.1.0/leaflet/R/plugin-providers.R                                                                     |   18 
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 leaflet-1.1.0/leaflet/R/plugin-terminator.R                                                                    |only
 leaflet-1.1.0/leaflet/R/scalebar.R                                                                             |only
 leaflet-1.1.0/leaflet/R/selection.R                                                                            |only
 leaflet-1.1.0/leaflet/R/shiny.R                                                                                |    4 
 leaflet-1.1.0/leaflet/R/utils.R                                                                                |   78 
 leaflet-1.1.0/leaflet/README.md                                                                                |   23 
 leaflet-1.1.0/leaflet/data                                                                                     |only
 leaflet-1.1.0/leaflet/inst/htmlwidgets/leaflet.js                                                              | 3363 ++++++----
 leaflet-1.1.0/leaflet/inst/htmlwidgets/leaflet.yaml                                                            |   15 
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 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/jquery/jquery.js                                                    |only
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 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-measure                                                     |only
 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-omnivore/index.js                                           |    2 
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 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet-providers/README.md                                         |   19 
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 leaflet-1.1.0/leaflet/inst/htmlwidgets/lib/leaflet/leaflet.css                                                 |    3 
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 leaflet-1.1.0/leaflet/man/addAwesomeMarkers.Rd                                                                 |only
 leaflet-1.1.0/leaflet/man/addGraticule.Rd                                                                      |only
 leaflet-1.1.0/leaflet/man/addLayersControl.Rd                                                                  |   27 
 leaflet-1.1.0/leaflet/man/addLegend.Rd                                                                         |   14 
 leaflet-1.1.0/leaflet/man/addMeasure.Rd                                                                        |only
 leaflet-1.1.0/leaflet/man/addMiniMap.Rd                                                                        |only
 leaflet-1.1.0/leaflet/man/addProviderTiles.Rd                                                                  |   18 
 leaflet-1.1.0/leaflet/man/addRasterImage.Rd                                                                    |   14 
 leaflet-1.1.0/leaflet/man/addScaleBar.Rd                                                                       |only
 leaflet-1.1.0/leaflet/man/addSimpleGraticule.Rd                                                                |only
 leaflet-1.1.0/leaflet/man/addTerminator.Rd                                                                     |only
 leaflet-1.1.0/leaflet/man/atlStorms2005.Rd                                                                     |only
 leaflet-1.1.0/leaflet/man/awesomeIconList.Rd                                                                   |only
 leaflet-1.1.0/leaflet/man/awesomeIcons.Rd                                                                      |only
 leaflet-1.1.0/leaflet/man/breweries91.Rd                                                                       |only
 leaflet-1.1.0/leaflet/man/colorNumeric.Rd                                                                      |   29 
 leaflet-1.1.0/leaflet/man/deprecated.Rd                                                                        |    2 
 leaflet-1.1.0/leaflet/man/derivePoints.Rd                                                                      |only
 leaflet-1.1.0/leaflet/man/derivePolygons.Rd                                                                    |only
 leaflet-1.1.0/leaflet/man/dispatch.Rd                                                                          |    9 
 leaflet-1.1.0/leaflet/man/easyButton.Rd                                                                        |only
 leaflet-1.1.0/leaflet/man/evalFormula.Rd                                                                       |only
 leaflet-1.1.0/leaflet/man/expandLimits.Rd                                                                      |only
 leaflet-1.1.0/leaflet/man/expandLimitsBbox.Rd                                                                  |only
 leaflet-1.1.0/leaflet/man/filterNULL.Rd                                                                        |only
 leaflet-1.1.0/leaflet/man/gadmCHE.Rd                                                                           |only
 leaflet-1.1.0/leaflet/man/getMapData.Rd                                                                        |only
 leaflet-1.1.0/leaflet/man/iconList.Rd                                                                          |   11 
 leaflet-1.1.0/leaflet/man/icons.Rd                                                                             |   11 
 leaflet-1.1.0/leaflet/man/leaflet.Rd                                                                           |   78 
 leaflet-1.1.0/leaflet/man/leafletDependencies.Rd                                                               |only
 leaflet-1.1.0/leaflet/man/leafletProxy.Rd                                                                      |   39 
 leaflet-1.1.0/leaflet/man/makeAwesomeIcon.Rd                                                                   |only
 leaflet-1.1.0/leaflet/man/makeIcon.Rd                                                                          |   11 
 leaflet-1.1.0/leaflet/man/map-layers.Rd                                                                        |  151 
 leaflet-1.1.0/leaflet/man/map-methods.Rd                                                                       |    2 
 leaflet-1.1.0/leaflet/man/map-options.Rd                                                                       |   74 
 leaflet-1.1.0/leaflet/man/map-shiny.Rd                                                                         |    5 
 leaflet-1.1.0/leaflet/man/mapOptions.Rd                                                                        |   18 
 leaflet-1.1.0/leaflet/man/previewColors.Rd                                                                     |    2 
 leaflet-1.1.0/leaflet/man/providers.Rd                                                                         |only
 leaflet-1.1.0/leaflet/man/providers.details.Rd                                                                 |only
 leaflet-1.1.0/leaflet/man/remove.Rd                                                                            |   13 
 leaflet-1.1.0/leaflet/man/safeLabel.Rd                                                                         |only
 leaflet-1.1.0/leaflet/man/showGroup.Rd                                                                         |    2 
 leaflet-1.1.0/leaflet/man/validateCoords.Rd                                                                    |only
 leaflet-1.1.0/leaflet/tests/testit/test-legend.R                                                               |    6 
 leaflet-1.1.0/leaflet/tests/testit/test-measure.R                                                              |only
 leaflet-1.1.0/leaflet/tests/testit/test-remote.R                                                               |   12 
 leaflet-1.1.0/leaflet/tests/testthat                                                                           |only
 leaflet-1.1.0/leaflet/tests/testthat.R                                                                         |only
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Package ApacheLogProcessor updated to version 0.2.0 with previous version 0.1.6 dated 2016-08-16

Title: Process the Apache Web Server Log Files
Description: Provides capabilities to process Apache HTTPD Log files.The main functionalities are to extract data from access and error log files to data frames.
Author: Diogo Silveira Mendonca
Maintainer: Diogo Silveira Mendonca <diogosmendonca@gmail.com>

Diff between ApacheLogProcessor versions 0.1.6 dated 2016-08-16 and 0.2.0 dated 2017-02-21

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Package rmdformats updated to version 0.3.1 with previous version 0.3 dated 2016-09-05

Title: HTML Output Formats and Templates for 'rmarkdown' Documents
Description: HTML formats and templates for 'rmarkdown' documents, with some extra features such as automatic table of contents, lightboxed figures, dynamic crosstab helper.
Author: Julien Barnier [aut, cre]
Maintainer: Julien Barnier <julien.barnier@ens-lyon.fr>

Diff between rmdformats versions 0.3 dated 2016-09-05 and 0.3.1 dated 2017-02-21

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Package eurostat updated to version 2.2.43 with previous version 2.2.1 dated 2016-09-14

Title: Tools for Eurostat Open Data
Description: Tools to download data from the Eurostat database <http://ec.europa.eu/eurostat> together with search and manipulation utilities.
Author: Leo Lahti [aut, cre], Przemyslaw Biecek [aut], Markus Kainu [aut], Janne Huovari [aut], Joona Lehtomaki [ctb], Francois Briatte [ctb], Oliver Reiter [ctb]
Maintainer: Leo Lahti <louhos@googlegroups.com>

Diff between eurostat versions 2.2.1 dated 2016-09-14 and 2.2.43 dated 2017-02-21

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Package csv updated to version 0.4 with previous version 0.3 dated 2017-02-18

Title: Read and Write CSV Files with Selected Conventions
Description: Reads and writes CSV with selected conventions. Uses the same generic function for reading and writing to promote consistent formats.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>

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Package RSNPset updated to version 0.5.2 with previous version 0.5 dated 2015-11-20

Title: Efficient Score Statistics for Genome-Wide SNP Set Analysis
Description: An implementation of the use of efficient score statistics in genome-wide SNP set analysis with complex traits. Three standard score statistics (Cox, binomial, and Gaussian) are provided, but the package is easily extensible to include others. Code implementing the inferential procedure is primarily written in C++ and utilizes parallelization of the analysis to reduce runtime. A supporting function offers simple computation of observed, permutation, and FWER and FDR adjusted p-values.
Author: Chanhee Yi, Alexander Sibley, and Kouros Owzar
Maintainer: Alexander Sibley <alexander.sibley@dm.duke.edu>

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Package miceadds updated to version 2.3-0 with previous version 2.2-0 dated 2017-01-11

Title: Some Additional Multiple Imputation Functions, Especially for 'mice'
Description: Contains some auxiliary functions for multiple imputation which complements existing functionality in R. In addition to some utility functions, main features include plausible value imputation, multilevel imputation functions, imputation using partial least squares (PLS) for high dimensional predictors, nested multiple imputation.
Author: Alexander Robitzsch [aut, cre], Simon Grund [aut], Thorsten Henke [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>

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Package ipft updated to version 0.2.2 with previous version 0.1.03 dated 2017-02-15

Title: Indoor Positioning Fingerprinting Toolset
Description: Algorithms and utility functions for indoor positioning using fingerprinting techniques. These functions are designed for manipulation of RSSI (Received Signal Strength Intensity) data sets, estimation of positions,comparison of the performance of different models, and graphical visualization of data. Machine learning algorithms and methods such as k-nearest neighbors or probabilistic fingerprinting are implemented in this package to perform analysis and estimations over RSSI data sets.
Author: Emilio Sansano
Maintainer: Emilio Sansano <esansano@uji.es>

Diff between ipft versions 0.1.03 dated 2017-02-15 and 0.2.2 dated 2017-02-21

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Package fifer updated to version 1.1 with previous version 1.0 dated 2014-04-02

Title: A Biostatisticians Toolbox for Various Activities, Including Plotting, Data Cleanup, and Data Analysis
Description: Functions and datasets that can be used for data cleanup (e.g., functions for eliminating all but a few columns from a dataset, selecting a range of columns, quickly editing column names), plotting/presenting data (prism-like reproductions, spearman plots for ordinal data, making colored tables, plotting interactions with quantitative variables), and analyses common to biostatistics (e.g., random forest, multiple comparisons with chi square tests). See the package vignette for a brief introduction to many of the main functions.
Author: Dustin Fife <fife.dustin@gmail.com>
Maintainer: Dustin Fife <fife.dustin@gmail.com>

Diff between fifer versions 1.0 dated 2014-04-02 and 1.1 dated 2017-02-21

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Package DSsim updated to version 1.1.1 with previous version 1.1.0 dated 2017-01-16

Title: Distance Sampling Simulations
Description: Performs distance sampling simulations.It repeatedly generates instances of a user defined population within a given survey region, generates realisations of a survey design (currently these must be generated using Distance software in advance <http://distancesampling.org/>) and simulates the detection process. The data are then analysed so that the results can be compared for accuracy and precision across all replications. This will allow users to select survey designs which will give them the best accuracy and precision given their expectations about population distribution. Any uncertainty in population distribution or population parameters can be included by running the different survey designs for a number of different population descriptions. An example simulation can be found in the help file for make.simulation.
Author: Laura Marshall <lhm@st-and.ac.uk>
Maintainer: Laura Marshall <lhm@st-and.ac.uk>

Diff between DSsim versions 1.1.0 dated 2017-01-16 and 1.1.1 dated 2017-02-21

 DESCRIPTION                                           |    6 
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Package stremo (with last version 0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-09-29 0.2
2011-09-07 0.1

Permanent link
New package rnaturalearthdata with initial version 0.1.0
Package: rnaturalearthdata
Title: World Vector Map Data from Natural Earth Used in 'rnaturalearth'
Version: 0.1.0
Authors@R: person("Andy", "South", , "southandy@gmail.com", role = c("aut", "cre"))
Description: Vector map data from <http://www.naturalearthdata.com/>. Access functions are provided in the accompanying package 'rnaturalearth'.
License: CC0
LazyData: true
LazyDataCompression: xz
URL: https://github.com/ropenscilabs/rnaturalearthdata
BugReports: https://github.com/ropenscilabs/rnaturalearthdata/issues
Depends: R (>= 3.1.1)
Imports: sp (>= 1.0.15)
Suggests: knitr (>= 1.12.3), testthat (>= 0.9.1)
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-02-21 13:45:59 UTC; andy
Author: Andy South [aut, cre]
Maintainer: Andy South <southandy@gmail.com>
Repository: CRAN
Date/Publication: 2017-02-21 15:17:10

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New package mle.tools with initial version 1.0.0
Package: mle.tools
Type: Package
Title: Expected/Observed Fisher Information and Bias-Corrected Maximum Likelihood Estimate(s)
Version: 1.0.0
License: GPL (>= 2)
Date: 2017-02-21
Author: Josmar Mazucheli
Maintainer: Josmar Mazucheli <jmazucheli@gmail.com>
Description: Calculates the expected/observed Fisher information and the bias-corrected maximum likelihood estimate(s) via Cox-Snell Methodology.
Depends: R (>= 3.0.2)
Imports: stats
Suggests: fitdistrplus (>= 1.0-6)
RoxygenNote: 5.0.1
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2017-02-21 13:06:25 UTC; josmar
Repository: CRAN
Date/Publication: 2017-02-21 15:17:08

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Package KernelKnn updated to version 1.0.5 with previous version 1.0.4 dated 2017-02-10

Title: Kernel k Nearest Neighbors
Description: Extends the simple k-nearest neighbors algorithm by incorporating numerous kernel functions and a variety of distance metrics. The package takes advantage of 'RcppArmadillo' to speed up the calculation of distances between observations.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>

Diff between KernelKnn versions 1.0.4 dated 2017-02-10 and 1.0.5 dated 2017-02-21

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 MD5                                                           |   15 +--
 NAMESPACE                                                     |    3 
 NEWS.md                                                       |    5 +
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Package asnipe updated to version 1.1.3 with previous version 1.1.2 dated 2017-01-21

Title: Animal Social Network Inference and Permutations for Ecologists
Description: Implements several tools that are used in animal social network analysis. In particular, this package provides the tools to infer groups and generate networks from observation data, perform permutation tests on the data, calculate lagged association rates, and performed multiple regression analysis on social network data.
Author: Damien R. Farine <dfarine@orn.mpg.de>
Maintainer: Damien R. Farine <dfarine@orn.mpg.de>

Diff between asnipe versions 1.1.2 dated 2017-01-21 and 1.1.3 dated 2017-02-21

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New package ggimage with initial version 0.0.1
Package: ggimage
Title: Use Image in 'ggplot2'
Version: 0.0.1
Authors@R: person("Guangchuang", "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "cre"))
Description: Supports aesthetic mapping of image files to be visualized in 'ggplot2' graphic system. files as a scatterplot.
Depends: R (>= 3.3.0)
Imports: EBImage, ggplot2, grid, methods
Suggests: knitr, prettydoc
VignetteBuilder: knitr
ByteCompile: true
License: Artistic-2.0
URL: https://github.com/GuangchuangYu/ggimage
BugReports: https://github.com/GuangchuangYu/ggimage/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2017-02-21 12:28:42 UTC; guangchuangyu
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Repository: CRAN
Date/Publication: 2017-02-21 14:18:24

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New package GraphKit with initial version 0.4
Package: GraphKit
Type: Package
Title: Estimating Structural Invariants of Graphical Models
Version: 0.4
Date: 2017-2-20
Author: Manbir Gulati, Junwei Lu, and Han Liu
Maintainer: Manbir Gulati <manbirgulati@gmail.com>
Description: Efficient methods for constructing confidence intervals of monotone graph invariants, as well as testing for monotone graph properties. Many packages are available to estimate precision matrices, this package serves as a tool to extract structural properties from their induced graphs. By iteratively bootstrapping on only the relevant edge set, we are able to obtain the optimal interval size.
License: GPL (>= 2)
Depends: R (>= 2.10)
Imports: Rcpp (>= 0.12.8)
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 6.0.1
NeedsCompilation: yes
Packaged: 2017-02-21 10:39:19 UTC; ManiG
Repository: CRAN
Date/Publication: 2017-02-21 12:12:54

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New package woeBinning with initial version 0.1.1
Package: woeBinning
Type: Package
Title: Supervised WOE Binning of Numeric Variables and Factors
Version: 0.1.1
Date: 2017-02-21
Author: Thilo Eichenberg
Maintainer: Thilo Eichenberg <te.r@gmx.net>
Description: Implements an automated fine and coarse classing to bin numeric variables and factors with respect to a dichotomous target variable. Numeric variables are binned by merging a specified initial number of bins with similar frequencies. As a start sparse bins are merged with adjacent ones. Afterwards nearby bins with most similar WOE values are joined step by step until the information value (IV) decreases more than specified by a percentage value. Factors are binned by merging factor levels. At the beginning sparse levels are merged to a 'miscellaneous' level. Afterwards bins with most similar WOE values are joined step by step until the IV decreases more than specified by a percentage value. The package can be used with single variables or an entire data frame. It provides flexible tools for exploring different binning solutions and for deploying them to (new) data.
License: GPL (>= 2)
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2017-02-21 09:41:26 UTC; Thilo
Repository: CRAN
Date/Publication: 2017-02-21 11:41:15

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Package rsdmx updated to version 0.5-8 with previous version 0.5-7 dated 2017-01-24

Title: Tools for Reading SDMX Data and Metadata
Description: Set of classes and methods to read data and metadata documents exchanged through the Statistical Data and Metadata Exchange (SDMX) framework, currently focusing on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre], Matthieu Stigler [ctb], Eric Persson [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>

Diff between rsdmx versions 0.5-7 dated 2017-01-24 and 0.5-8 dated 2017-02-21

 DESCRIPTION                   |    8 +-
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Package Peptides updated to version 1.2.1 with previous version 1.1.2 dated 2017-01-16

Title: Calculate Indices and Theoretical Properties of Protein Sequences
Description: Calculate physicochemical properties and indices from amino-acid sequences of peptides and proteins. Include also the option to read and plot output files from the 'GROMACS' molecular dynamics package.
Author: Daniel Osorio, Paola Rondon-Villarreal and Rodrigo Torres.
Maintainer: Daniel Osorio <dcosorioh@unal.edu.co>

Diff between Peptides versions 1.1.2 dated 2017-01-16 and 1.2.1 dated 2017-02-21

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 Peptides-1.2.1/Peptides/NEWS                      |    4 
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Package spdep updated to version 0.6-10 with previous version 0.6-9 dated 2017-01-09

Title: Spatial Dependence: Weighting Schemes, Statistics and Models
Description: A collection of functions to create spatial weights matrix objects from polygon contiguities, from point patterns by distance and tessellations, for summarizing these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree; a collection of tests for spatial autocorrelation, including global Moran's I, APLE, Geary's C, Hubert/Mantel general cross product statistic, Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G and multicoloured join count statistics, local Moran's I and Getis/Ord G, saddlepoint approximations and exact tests for global and local Moran's I; and functions for estimating spatial simultaneous autoregressive (SAR) lag and error models, impact measures for lag models, weighted and unweighted SAR and CAR spatial regression models, semi-parametric and Moran eigenvector spatial filtering, GM SAR error models, and generalized spatial two stage least squares models.
Author: Roger Bivand [cre, aut], Micah Altman [ctb], Luc Anselin [ctb], Renato Assunção [ctb], Olaf Berke [ctb], Andrew Bernat [ctb], Guillaume Blanchet [ctb], Eric Blankmeyer [ctb], Marilia Carvalho [ctb], Bjarke Christensen [ctb], Yongwan Chun [ctb], Carsten Dormann [ctb], Stéphane Dray [ctb], Virgilio Gómez-Rubio [ctb], Martin Gubri [ctb], Rein Halbersma [ctb], Elias Krainski [ctb], Pierre Legendre [ctb], Nicholas Lewin-Koh [ctb], Hongfei Li [ctb], Jielai Ma [ctb], Abhirup Mallik [ctb, trl], Giovanni Millo [ctb], Werner Mueller [ctb], Hisaji Ono [ctb], Pedro Peres-Neto [ctb], Gianfranco Piras [ctb], Markus Reder [ctb], Michael Tiefelsdorf [ctb], Danlin Yu [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>

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New package SPAtest with initial version 1.0.0
Package: SPAtest
Type: Package
Title: Score Test Based on Saddlepoint Approximation
Version: 1.0.0
Date: 2017-02-19
Author: Rounak Dey, Seunggeun Lee
Maintainer: Rounak Dey <deyrnk@umich.edu>
Description: Performs score test using saddlepoint approximation to estimate the null distribution.
Depends: R (>= 3.0.0)
License: GPL (>= 2)
Repository: CRAN
NeedsCompilation: no
Packaged: 2017-02-20 02:02:35 UTC; Rounak
Date/Publication: 2017-02-21 08:02:38

More information about SPAtest at CRAN
Permanent link

Package smapr updated to version 0.1.0 with previous version 0.0.1 dated 2016-10-05

Title: Acquisition and Processing of NASA Soil Moisture Active-Passive (SMAP) Data
Description: Facilitates programmatic access to NASA Soil Moisture Active Passive (SMAP) data with R. It includes functions to search for, acquire, and extract SMAP data.
Author: Maxwell Joseph [aut, cre], Matthew Oakley [aut], Zachary Schira [aut]
Maintainer: Maxwell Joseph <maxwell.b.joseph@colorado.edu>

Diff between smapr versions 0.0.1 dated 2016-10-05 and 0.1.0 dated 2017-02-21

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New package RGBM with initial version 1.0-4
Package: RGBM
Type: Package
Title: LS-TreeBoost and LAD-TreeBoost for Gene Regulatory Network Reconstruction
Version: 1.0-4
Date: 2017-02-21
Author: Raghvendra Mall [aut, cre], Khalid Kunji [aut], Melissa O'Neill [ctb]
Authors@R: c(person(given = "Raghvendra",family = "Mall",role = c("aut","cre"), email = "rmall@hbku.edu.qa"), person(given="Khalid",family="Kunji",role="aut",email = "kkunji@hbku.edu.qa"), person(given="Melissa",family="O'Neill",role="ctb"))
Maintainer: Raghvendra Mall <rmall@hbku.edu.qa>
Repository: CRAN
Description: Provides an implementation of Regularized LS-TreeBoost & LAD-TreeBoost algorithm for Regulatory Network inference from any type of expression data (Microarray/RNA-seq etc).
License: GPL (>= 3)
LazyLoad: yes
Depends: foreach, plyr, doParallel
NeedsCompilation: yes
Packaged: 2017-02-21 06:58:57 UTC; rmall
Date/Publication: 2017-02-21 08:43:21

More information about RGBM at CRAN
Permanent link

Package replyr updated to version 0.2.3 with previous version 0.2.1 dated 2017-01-21

Title: Fluid Use of 'dplyr'
Description: Methods to get a grip on working with remote 'tbl' sources ('SQL' databases, 'sparklyr' 'Spark' 2.0.0 and above) through 'dplyr'. Adds convenience functions to make such tasks more like working with an in-memory 'data.frame'. Results do depend on which 'dplyr' data service you use.
Author: John Mount, Nina Zumel
Maintainer: John Mount <jmount@win-vector.com>

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More information about replyr at CRAN
Permanent link

Package RcmdrPlugin.EZR updated to version 1.35 with previous version 1.34 dated 2017-01-18

Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10901-8 or Nankodo, ISBN: 978-4-524-26158-1), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>

Diff between RcmdrPlugin.EZR versions 1.34 dated 2017-01-18 and 1.35 dated 2017-02-21

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Package oem updated to version 2.0.4 with previous version 2.0.3 dated 2016-10-26

Title: Orthogonalizing EM
Description: Solves penalized least squares problems using the orthogonalizing EM algorithm of Xiong et al. (2016) <doi:10.1080/00401706.2015.1054436>. The main fitting function is oem() and the functions cv.oem() and xval.oem() are for cross validation, the latter being an accelerated cross validation function for linear models. The big.oem() function allows for out of memory fitting.
Author: Bin Dai [aut], Jared Huling [aut, cre], Yixuan Qiu [ctb]
Maintainer: Jared Huling <jaredhuling@gmail.com>

Diff between oem versions 2.0.3 dated 2016-10-26 and 2.0.4 dated 2017-02-21

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New package nonpar with initial version 1.0.0
Package: nonpar
Type: Package
Title: A Collection of Nonparametric Hypothesis Tests
Version: 1.0.0
Author: D. Lukke Sweet
Maintainer: D. Lukke Sweet <dls229@zips.uakron.edu>
Depends: R (>= 3.3.1)
Imports: methods
Description: Contains the following 5 nonparametric hypothesis tests: The Sign Test, The 2 Sample Median Test, Miller's Jackknife Procedure, Cochran's Q Test, & The Stuart-Maxwell Test.
License: GPL-3
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2017-02-21 00:53:34 UTC; Lukke
Repository: CRAN
Date/Publication: 2017-02-21 08:02:43

More information about nonpar at CRAN
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Package NLP updated to version 0.1-10 with previous version 0.1-9 dated 2016-02-18

Title: Natural Language Processing Infrastructure
Description: Basic classes and methods for Natural Language Processing.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

Diff between NLP versions 0.1-9 dated 2016-02-18 and 0.1-10 dated 2017-02-21

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Package movMF updated to version 0.2-1 with previous version 0.2-0 dated 2014-07-03

Title: Mixtures of von Mises-Fisher Distributions
Description: Fit and simulate mixtures of von Mises-Fisher distributions.
Author: Kurt Hornik [aut, cre], Bettina Grün [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

Diff between movMF versions 0.2-0 dated 2014-07-03 and 0.2-1 dated 2017-02-21

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Package KraljicMatrix updated to version 0.1.1 with previous version 0.1.0 dated 2016-12-15

Title: A Quantified Implementation of the Kraljic Matrix
Description: Implements a quantified approach to the Kraljic Matrix (Kraljic, 1983, <https://hbr.org/1983/09/purchasing-must-become-supply-management>) for strategically analyzing a firm’s purchasing portfolio. It combines multi-objective decision analysis to measure purchasing characteristics and uses this information to place products and services within the Kraljic Matrix.
Author: Bradley Boehmke [aut, cre], Robert Montgomery [ctb], Ogden Jeffrey [ctb], Jason Freels [ctb]
Maintainer: Bradley Boehmke <bradleyboehmke@gmail.com>

Diff between KraljicMatrix versions 0.1.0 dated 2016-12-15 and 0.1.1 dated 2017-02-21

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Package jmv updated to version 0.7.0.3 with previous version 0.7.0 dated 2017-02-13

Title: The 'jamovi' Analyses
Description: 'jamovi' is a rich graphical statistics program providing many common statistical tests such as t-tests, ANOVAs, correlation matrices, proportion tests, contingency tables, etc (see <https://www.jamovi.org> for more information). This package makes all of the basic 'jamovi' analyses available to the R user.
Author: Jonathon Love, Damian Dropmann, Ravi Selker
Maintainer: Jonathon Love <jon@thon.cc>

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Package hisse updated to version 1.8.1 with previous version 1.8 dated 2016-08-25

Title: Hidden State Speciation and Extinction
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification.
Author: Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>

Diff between hisse versions 1.8 dated 2016-08-25 and 1.8.1 dated 2017-02-21

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Package BAS updated to version 1.4.3 with previous version 1.4.2 dated 2016-10-13

Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Description: Package for Bayesian Model Averaging in linear models and generalized linear models using stochastic or deterministic sampling without replacement from posterior distributions. Prior distributions on coefficients are from Zellner's g-prior or mixtures of g-priors corresponding to the Zellner-Siow Cauchy Priors or the mixture of g-priors from Liang et al (2008) <DOI:10.1198/016214507000001337> for linear models or mixtures of g-priors in GLMs of Li and Clyde (2015) <http://arxiv.org/abs/1503.06913>. Other model selection criteria include AIC, BIC and Empirical Bayes estimates of g. Sampling probabilities may be updated based on the sampled models using Sampling w/out Replacement or an efficient MCMC algorithm samples models using the BAS tree structure as an efficient hash table. Uniform priors over all models or beta-binomial prior distributions on model size are allowed, and for large p truncated priors on the model space may be used. The user may force variables to always be included. Details behind the sampling algorithm are provided in Clyde, Ghosh and Littman (2010) <DOI:10.1198/jcgs.2010.09049>. This material is based upon work supported by the National Science Foundation under Grant DMS-1106891. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
Author: Merlise Clyde [aut, cre, cph], Michael Littman [ctb], Quanli Wang [ctb], Joyee Ghosh [ctb], Yingbo Li [ctb]
Maintainer: Merlise Clyde <clyde@stat.duke.edu>

Diff between BAS versions 1.4.2 dated 2016-10-13 and 1.4.3 dated 2017-02-21

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Package AMModels updated to version 0.1.2 with previous version 0.1.1 dated 2017-02-01

Title: Adaptive Management Model Manager
Description: Helps enable adaptive management by codifying knowledge in the form of models generated from numerous analyses and data sets. Facilitates this process by storing all models and data sets in a single object that can be updated and saved, thus tracking changes in knowledge through time. A shiny application called AM Model Manager (modelMgr()) enables the use of these functions via a GUI.
Author: Jon Katz <jonkatz4@gmail.com>, Therese Donovan <tdonovan@uvm.edu>
Maintainer: Jon Katz <jonkatz4@gmail.com>

Diff between AMModels versions 0.1.1 dated 2017-02-01 and 0.1.2 dated 2017-02-21

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