Title: Rarefaction Tool Kit
Description: Rarefy data, calculate diversity and plot the results.
Author: Paul Saary, Falk Hildebrand
Maintainer: Paul Saary <rtk@paulsaary.de>
Diff between rtk versions 0.2.2 dated 2016-08-10 and 0.2.4.1 dated 2017-02-22
DESCRIPTION | 10 - MD5 | 46 +++-- NAMESPACE | 3 R/RcppExports.R | 2 R/collectorscurve.R | 364 ++++++++++++++++++++++++++++++++++++++------- R/rarefaction.R | 5 R/rarefaction.plots.R | 2 README.md | 8 + build/partial.rdb |binary man/collectors.curve.Rd | 33 +++- man/plot.rarefaction.Rd | 2 src/ClStr2Mat.cpp | 183 +++++++++++++---------- src/ClStr2Mat.h | 11 - src/IO.cpp | 369 +++++++++++++++++++++++++++++----------------- src/IO.h | 22 +- src/Makevars | 2 src/Math.h | 1 src/Matrix.cpp | 380 +++++++++++++++++++++++++++++++++++++----------- src/Matrix.h | 120 ++++++--------- src/RRare.cpp | 48 +++--- src/RRare.h | 8 - src/RcppExports.cpp | 10 - src/Rwrapper.cpp | 16 -- src/options.h |only src/register.c |only 25 files changed, 1140 insertions(+), 505 deletions(-)
Title: Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Column- and row- wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), Mahalanobis distance are some of the many fast functions.
Author: Manos Papadakis, Michail Tsagris, Marios Dimitriadis, Ioannis Tsamardinos, Matteo Fasiolo, Giorgos Borboudakis and John Burkardt
Maintainer: Manos Papadakis <papadakm95@gmail.com>
Diff between Rfast versions 1.7.3 dated 2016-12-18 and 1.7.4 dated 2017-02-22
Rfast-1.7.3/Rfast/R/col_Mins_Maxs.R |only Rfast-1.7.3/Rfast/R/permutation_next.R |only Rfast-1.7.3/Rfast/R/permutation_prev.R |only Rfast-1.7.3/Rfast/src/k_comb_n.cpp |only Rfast-1.7.3/Rfast/src/sort_uniq_double.cpp |only Rfast-1.7.3/Rfast/src/sort_uniq_int.cpp |only Rfast-1.7.4/Rfast/DESCRIPTION | 10 Rfast-1.7.4/Rfast/MD5 | 302 ++++++++++++++------------ Rfast-1.7.4/Rfast/NAMESPACE | 12 - Rfast-1.7.4/Rfast/R/Digamma.R | 4 Rfast-1.7.4/Rfast/R/Dist.R |only Rfast-1.7.4/Rfast/R/Lgamma.R | 4 Rfast-1.7.4/Rfast/R/Match.R | 4 Rfast-1.7.4/Rfast/R/Order.R | 6 Rfast-1.7.4/Rfast/R/Trigamma.R | 4 Rfast-1.7.4/Rfast/R/Var.R |only Rfast-1.7.4/Rfast/R/allbetas.R | 24 -- Rfast-1.7.4/Rfast/R/anovas.R | 43 +-- Rfast-1.7.4/Rfast/R/beta.mle.R | 68 +++-- Rfast-1.7.4/Rfast/R/binary_search.R | 7 Rfast-1.7.4/Rfast/R/check_data.R |only Rfast-1.7.4/Rfast/R/colMaxs.R | 8 Rfast-1.7.4/Rfast/R/colMedians.R | 4 Rfast-1.7.4/Rfast/R/colMins.R | 9 Rfast-1.7.4/Rfast/R/colMinsMaxs.R |only Rfast-1.7.4/Rfast/R/colVars.R | 9 Rfast-1.7.4/Rfast/R/colhameans.R |only Rfast-1.7.4/Rfast/R/colmeans.R | 4 Rfast-1.7.4/Rfast/R/colrange.R | 2 Rfast-1.7.4/Rfast/R/colsums.R | 4 Rfast-1.7.4/Rfast/R/comb_n.R | 22 + Rfast-1.7.4/Rfast/R/cor.fsreg.R |only Rfast-1.7.4/Rfast/R/correls.R | 3 Rfast-1.7.4/Rfast/R/count_value.R | 4 Rfast-1.7.4/Rfast/R/cova.R | 6 Rfast-1.7.4/Rfast/R/data.frame.to_matrix.R |only Rfast-1.7.4/Rfast/R/design_matrix.R | 4 Rfast-1.7.4/Rfast/R/diri.nr2.R | 2 Rfast-1.7.4/Rfast/R/dista.R | 57 +--- Rfast-1.7.4/Rfast/R/floyd.R | 4 Rfast-1.7.4/Rfast/R/ftests.R | 5 Rfast-1.7.4/Rfast/R/gsquare_ex.R | 5 Rfast-1.7.4/Rfast/R/hash.find.R | 4 Rfast-1.7.4/Rfast/R/hash.list.R | 2 Rfast-1.7.4/Rfast/R/is.symmetric.R |only Rfast-1.7.4/Rfast/R/is_element.R | 4 Rfast-1.7.4/Rfast/R/logistic_only.R | 4 Rfast-1.7.4/Rfast/R/mahala.R | 4 Rfast-1.7.4/Rfast/R/med.R | 4 Rfast-1.7.4/Rfast/R/min_max.R | 4 Rfast-1.7.4/Rfast/R/mvbetas.R | 31 -- Rfast-1.7.4/Rfast/R/negbin.mle.R |only Rfast-1.7.4/Rfast/R/nth.R | 4 Rfast-1.7.4/Rfast/R/permutation.R | 4 Rfast-1.7.4/Rfast/R/permutation.next.R |only Rfast-1.7.4/Rfast/R/permutation.prev.R |only Rfast-1.7.4/Rfast/R/poisson_only.R | 4 Rfast-1.7.4/Rfast/R/proptests.R | 4 Rfast-1.7.4/Rfast/R/racg.R | 3 Rfast-1.7.4/Rfast/R/regression.R | 4 Rfast-1.7.4/Rfast/R/rmvlaplace.R | 20 - Rfast-1.7.4/Rfast/R/rmvnorm.R | 6 Rfast-1.7.4/Rfast/R/rmvt.R | 3 Rfast-1.7.4/Rfast/R/rowMaxs.R | 4 Rfast-1.7.4/Rfast/R/rowMedians.R | 4 Rfast-1.7.4/Rfast/R/rowMins.R | 4 Rfast-1.7.4/Rfast/R/rowVars.R | 9 Rfast-1.7.4/Rfast/R/rowhameans.R |only Rfast-1.7.4/Rfast/R/rowmeans.R | 4 Rfast-1.7.4/Rfast/R/rowrange.R | 4 Rfast-1.7.4/Rfast/R/rowsums.R | 4 Rfast-1.7.4/Rfast/R/score.betaregs.R |only Rfast-1.7.4/Rfast/R/score.negbinregs.R |only Rfast-1.7.4/Rfast/R/score.weibregs.R |only Rfast-1.7.4/Rfast/R/sort_cor_vectors.R | 4 Rfast-1.7.4/Rfast/R/sort_index.R | 4 Rfast-1.7.4/Rfast/R/sort_mat.R | 4 Rfast-1.7.4/Rfast/R/sort_unique.R | 6 Rfast-1.7.4/Rfast/R/spat.med.R |only Rfast-1.7.4/Rfast/R/standardise.R | 24 -- Rfast-1.7.4/Rfast/R/ttests.R | 29 -- Rfast-1.7.4/Rfast/R/univglms.R | 124 +++------- Rfast-1.7.4/Rfast/R/weibull.mle.R |only Rfast-1.7.4/Rfast/R/which_isFactor.R | 4 Rfast-1.7.4/Rfast/R/zip.mle.R | 9 Rfast-1.7.4/Rfast/R/ztp.mle.R | 4 Rfast-1.7.4/Rfast/man/Dist.Rd |only Rfast-1.7.4/Rfast/man/Lgamma.Rd | 8 Rfast-1.7.4/Rfast/man/Match.Rd | 7 Rfast-1.7.4/Rfast/man/Order.Rd | 11 Rfast-1.7.4/Rfast/man/Rfast-package.Rd | 12 - Rfast-1.7.4/Rfast/man/Var.Rd |only Rfast-1.7.4/Rfast/man/binary_search.Rd | 4 Rfast-1.7.4/Rfast/man/check_data.Rd |only Rfast-1.7.4/Rfast/man/colMedians.Rd | 7 Rfast-1.7.4/Rfast/man/colMins.Rd | 11 Rfast-1.7.4/Rfast/man/colmeans.Rd | 9 Rfast-1.7.4/Rfast/man/colsums.Rd | 6 Rfast-1.7.4/Rfast/man/comb_n.Rd | 14 - Rfast-1.7.4/Rfast/man/cor.fsreg.Rd |only Rfast-1.7.4/Rfast/man/data.frame.to_matrix.Rd |only Rfast-1.7.4/Rfast/man/design_matrix.Rd | 1 Rfast-1.7.4/Rfast/man/diri.nr2.Rd | 16 - Rfast-1.7.4/Rfast/man/floyd.Rd | 4 Rfast-1.7.4/Rfast/man/is.symmetric.Rd |only Rfast-1.7.4/Rfast/man/is_element.Rd | 7 Rfast-1.7.4/Rfast/man/logistic_only.Rd | 6 Rfast-1.7.4/Rfast/man/min_max.Rd | 4 Rfast-1.7.4/Rfast/man/nth.Rd | 10 Rfast-1.7.4/Rfast/man/permutation.Rd | 27 +- Rfast-1.7.4/Rfast/man/poisson_only.Rd | 3 Rfast-1.7.4/Rfast/man/proptests.Rd | 7 Rfast-1.7.4/Rfast/man/regression.Rd | 14 - Rfast-1.7.4/Rfast/man/rmvnorm.Rd | 2 Rfast-1.7.4/Rfast/man/rowMins.Rd | 2 Rfast-1.7.4/Rfast/man/score.betaregs.Rd |only Rfast-1.7.4/Rfast/man/score.glms.Rd | 21 + Rfast-1.7.4/Rfast/man/score.negbinregs.Rd |only Rfast-1.7.4/Rfast/man/score.weibregs.Rd |only Rfast-1.7.4/Rfast/man/spat.med.Rd |only Rfast-1.7.4/Rfast/man/weibull.mle.Rd |only Rfast-1.7.4/Rfast/man/zip.mle.Rd | 25 +- Rfast-1.7.4/Rfast/src/Digamma.cpp | 7 Rfast-1.7.4/Rfast/src/Hash_list.cpp | 3 Rfast-1.7.4/Rfast/src/Lgamma.cpp | 7 Rfast-1.7.4/Rfast/src/Match.cpp | 3 Rfast-1.7.4/Rfast/src/Order.cpp | 33 +- Rfast-1.7.4/Rfast/src/Trigamma.cpp | 7 Rfast-1.7.4/Rfast/src/Var.cpp |only Rfast-1.7.4/Rfast/src/binarysearch.cpp | 6 Rfast-1.7.4/Rfast/src/col_min_max.cpp | 10 Rfast-1.7.4/Rfast/src/colmaxs.cpp | 3 Rfast-1.7.4/Rfast/src/colmeans.cpp | 4 Rfast-1.7.4/Rfast/src/colmeds.cpp | 36 +-- Rfast-1.7.4/Rfast/src/colmins.cpp | 3 Rfast-1.7.4/Rfast/src/colsums.cpp | 4 Rfast-1.7.4/Rfast/src/comb_n.cpp |only Rfast-1.7.4/Rfast/src/count_value.cpp | 3 Rfast-1.7.4/Rfast/src/cova.cpp |only Rfast-1.7.4/Rfast/src/design_matrix.cpp | 33 +- Rfast-1.7.4/Rfast/src/diri_nr_type2.cpp | 9 Rfast-1.7.4/Rfast/src/euclidean_dist.cpp |only Rfast-1.7.4/Rfast/src/floyd_john.cpp | 8 Rfast-1.7.4/Rfast/src/frame_to_matrix.cpp |only Rfast-1.7.4/Rfast/src/gsquare_ex.cpp | 1 Rfast-1.7.4/Rfast/src/hash_find.cpp | 8 Rfast-1.7.4/Rfast/src/init.c |only Rfast-1.7.4/Rfast/src/is_element.cpp | 4 Rfast-1.7.4/Rfast/src/logistic_only.cpp | 47 +--- Rfast-1.7.4/Rfast/src/manhattan_dist.cpp |only Rfast-1.7.4/Rfast/src/max_dist.cpp |only Rfast-1.7.4/Rfast/src/med.cpp | 9 Rfast-1.7.4/Rfast/src/min_max.cpp | 32 +- Rfast-1.7.4/Rfast/src/mn.cpp | 101 +++++--- Rfast-1.7.4/Rfast/src/mn.h | 38 +-- Rfast-1.7.4/Rfast/src/nth.cpp | 3 Rfast-1.7.4/Rfast/src/permutation.cpp | 42 +-- Rfast-1.7.4/Rfast/src/permutation_next.cpp | 38 +-- Rfast-1.7.4/Rfast/src/permutation_prev.cpp | 40 +-- Rfast-1.7.4/Rfast/src/poisson_only.cpp | 45 +-- Rfast-1.7.4/Rfast/src/regression.cpp | 9 Rfast-1.7.4/Rfast/src/rowMaxs.cpp | 15 - Rfast-1.7.4/Rfast/src/rowMins.cpp | 17 - Rfast-1.7.4/Rfast/src/rowmeans.cpp | 3 Rfast-1.7.4/Rfast/src/rowmeds.cpp |only Rfast-1.7.4/Rfast/src/rowrange.cpp | 9 Rfast-1.7.4/Rfast/src/rowsums.cpp | 4 Rfast-1.7.4/Rfast/src/sort_cor_vecs.cpp | 4 Rfast-1.7.4/Rfast/src/sort_index.cpp | 4 Rfast-1.7.4/Rfast/src/sort_mat.cpp | 4 Rfast-1.7.4/Rfast/src/sort_unique_double.cpp |only Rfast-1.7.4/Rfast/src/sort_unique_int.cpp |only Rfast-1.7.4/Rfast/src/spat_med.cpp |only Rfast-1.7.4/Rfast/src/symmetric.cpp |only Rfast-1.7.4/Rfast/src/vec_comb_n.cpp |only Rfast-1.7.4/Rfast/src/which_isFactor.cpp | 7 176 files changed, 825 insertions(+), 1070 deletions(-)
Title: Flexible Mediation Analysis Using Natural Effect Models
Description: Run flexible mediation analyses using natural effect models as described in
Lange, Vansteelandt and Bekaert (2012) <DOI:10.1093/aje/kwr525>,
Vansteelandt, Bekaert and Lange (2012) <DOI:10.1515/2161-962X.1014> and
Loeys, Moerkerke, De Smet, Buysse, Steen and Vansteelandt (2013) <DOI:10.1080/00273171.2013.832132>.
Author: Johan Steen [aut, cre],
Tom Loeys [aut],
Beatrijs Moerkerke [aut],
Stijn Vansteelandt [aut],
Joris Meys [ctb] (technical support),
Theis Lange [ctb] (valuable suggestions),
Joscha Legewie [ctb]
Maintainer: Johan Steen <johan.steen@gmail.com>
Diff between medflex versions 0.6-0 dated 2015-09-13 and 0.6-1 dated 2017-02-22
medflex-0.6-0/medflex/vignettes/medflex.pdf |only medflex-0.6-0/medflex/vignettes/sandwich.pdf |only medflex-0.6-1/medflex/DESCRIPTION | 38 ++++++----- medflex-0.6-1/medflex/MD5 | 66 ++++++++++---------- medflex-0.6-1/medflex/NAMESPACE | 2 medflex-0.6-1/medflex/NEWS | 6 + medflex-0.6-1/medflex/R/neImpute.R | 35 +++++++--- medflex-0.6-1/medflex/R/neLht.R | 8 +- medflex-0.6-1/medflex/R/neModel.R | 7 +- medflex-0.6-1/medflex/R/neWeight.R | 22 +++++- medflex-0.6-1/medflex/R/terms-expand.R | 12 +-- medflex-0.6-1/medflex/R/utils.R | 13 ++-- medflex-0.6-1/medflex/build |only medflex-0.6-1/medflex/data/UPBdata.rda |binary medflex-0.6-1/medflex/inst/CITATION | 39 +++++++----- medflex-0.6-1/medflex/inst/doc/medflex.R |only medflex-0.6-1/medflex/inst/doc/medflex.Rnw | 84 +++++++++++++------------- medflex-0.6-1/medflex/inst/doc/medflex.pdf |binary medflex-0.6-1/medflex/inst/doc/sandwich.pdf |binary medflex-0.6-1/medflex/man/UPBdata.Rd | 5 - medflex-0.6-1/medflex/man/expData-methods.Rd | 9 +- medflex-0.6-1/medflex/man/expData.Rd | 3 medflex-0.6-1/medflex/man/neImpute.Rd | 5 - medflex-0.6-1/medflex/man/neImpute.default.Rd | 42 ++++++------- medflex-0.6-1/medflex/man/neImpute.formula.Rd | 23 +++---- medflex-0.6-1/medflex/man/neLht-methods.Rd | 23 +++---- medflex-0.6-1/medflex/man/neLht.Rd | 39 ++++++------ medflex-0.6-1/medflex/man/neModel-methods.Rd | 13 +--- medflex-0.6-1/medflex/man/neModel.Rd | 35 +++++----- medflex-0.6-1/medflex/man/neWeight.Rd | 5 - medflex-0.6-1/medflex/man/neWeight.default.Rd | 20 +++--- medflex-0.6-1/medflex/man/neWeight.formula.Rd | 15 ++-- medflex-0.6-1/medflex/man/plot.neLht.Rd | 14 ++-- medflex-0.6-1/medflex/man/plot.neModel.Rd | 10 +-- medflex-0.6-1/medflex/vignettes/bib.bib | 1 medflex-0.6-1/medflex/vignettes/medflex.Rnw | 84 +++++++++++++------------- 36 files changed, 362 insertions(+), 316 deletions(-)
Title: Deriving Expressions of Joint Interventional Distributions and
Transport Formulas in Causal Models
Description: Functions for identification and transportation of causal effects. Provides a conditional causal effect identification algorithm (IDC) by Shpitser, I. and Pearl, J. (2006) <http://ftp.cs.ucla.edu/pub/stat_ser/r329-uai.pdf>, an algorithm for transportability from multiple domains with limited experiments by Bareinboim, E. and Pearl, J. (2014) <http://ftp.cs.ucla.edu/pub/stat_ser/r443.pdf> and a selection bias recovery algorithm by Bareinboim, E. and Tian, J. (2015) <http://ftp.cs.ucla.edu/pub/stat_ser/r445.pdf>. All of the previously mentioned algorithms are based on a causal effect identification algorithm by Tian , J. (2002) <http://ftp.cs.ucla.edu/pub/stat_ser/r309.pdf>.
Author: Santtu Tikka
Maintainer: Santtu Tikka <santtuth@gmail.com>
Diff between causaleffect versions 1.3.0 dated 2016-10-07 and 1.3.3 dated 2017-02-22
causaleffect-1.3.0/causaleffect/R/compute.q.R |only causaleffect-1.3.0/causaleffect/R/organize.terms.R |only causaleffect-1.3.0/causaleffect/R/parse.layout.R |only causaleffect-1.3.0/causaleffect/R/simplify.causal.R |only causaleffect-1.3.0/causaleffect/R/simplify.rc.R |only causaleffect-1.3.3/causaleffect/DESCRIPTION | 10 causaleffect-1.3.3/causaleffect/MD5 | 132 +-- causaleffect-1.3.3/causaleffect/NAMESPACE | 7 causaleffect-1.3.3/causaleffect/NEWS | 70 - causaleffect-1.3.3/causaleffect/R/activate.interventions.R | 62 - causaleffect-1.3.3/causaleffect/R/activate.selection.variable.R |only causaleffect-1.3.3/causaleffect/R/ancestors.R | 13 causaleffect-1.3.3/causaleffect/R/c.components.R | 41 causaleffect-1.3.3/causaleffect/R/cancel.R | 32 causaleffect-1.3.3/causaleffect/R/cancel.rc.R | 68 - causaleffect-1.3.3/causaleffect/R/causal.effect.R | 94 +- causaleffect-1.3.3/causaleffect/R/causal.parents.R |only causaleffect-1.3.3/causaleffect/R/compute.c.factor.R |only causaleffect-1.3.3/causaleffect/R/connected.R |only causaleffect-1.3.3/causaleffect/R/deconstruct.R | 285 +++--- causaleffect-1.3.3/causaleffect/R/descendants.R |only causaleffect-1.3.3/causaleffect/R/descendent.sets.R |only causaleffect-1.3.3/causaleffect/R/exclusion.restrictions.R |only causaleffect-1.3.3/causaleffect/R/factorize.R | 39 causaleffect-1.3.3/causaleffect/R/gather.R | 26 causaleffect-1.3.3/causaleffect/R/generalize.R | 53 - causaleffect-1.3.3/causaleffect/R/get.expression.R | 62 - causaleffect-1.3.3/causaleffect/R/get.expression.internal.R |only causaleffect-1.3.3/causaleffect/R/id.R | 296 +++--- causaleffect-1.3.3/causaleffect/R/idc.R | 54 - causaleffect-1.3.3/causaleffect/R/identify.R | 105 +- causaleffect-1.3.3/causaleffect/R/independence.restrictions.R |only causaleffect-1.3.3/causaleffect/R/insert.R | 54 - causaleffect-1.3.3/causaleffect/R/irrelevant.R |only causaleffect-1.3.3/causaleffect/R/is.prefix.R | 5 causaleffect-1.3.3/causaleffect/R/join.R | 78 - causaleffect-1.3.3/causaleffect/R/meta.transport.R | 36 causaleffect-1.3.3/causaleffect/R/observed.graph.R | 11 causaleffect-1.3.3/causaleffect/R/parents.R |only causaleffect-1.3.3/causaleffect/R/parse.deconstruct.R | 70 - causaleffect-1.3.3/causaleffect/R/parse.expression.R | 116 +- causaleffect-1.3.3/causaleffect/R/parse.graphml.R | 15 causaleffect-1.3.3/causaleffect/R/parse.graphml.internal.R | 49 - causaleffect-1.3.3/causaleffect/R/parse.graphml.standard.R | 107 +- causaleffect-1.3.3/causaleffect/R/parse.joint.R | 27 causaleffect-1.3.3/causaleffect/R/probability.R | 19 causaleffect-1.3.3/causaleffect/R/q.constraints.R |only causaleffect-1.3.3/causaleffect/R/rc.R | 147 +-- causaleffect-1.3.3/causaleffect/R/recover.R | 106 +- causaleffect-1.3.3/causaleffect/R/sc.components.R | 47 - causaleffect-1.3.3/causaleffect/R/set.primes.R |only causaleffect-1.3.3/causaleffect/R/simplify.R | 112 +- causaleffect-1.3.3/causaleffect/R/simplify.expression.R | 145 +-- causaleffect-1.3.3/causaleffect/R/simplify.trmz.R | 107 +- causaleffect-1.3.3/causaleffect/R/transport.R | 25 causaleffect-1.3.3/causaleffect/R/trmz.R | 431 ++++------ causaleffect-1.3.3/causaleffect/R/ts.operator.R |only causaleffect-1.3.3/causaleffect/R/unobserved.graph.R | 34 causaleffect-1.3.3/causaleffect/R/verma.constraints.R |only causaleffect-1.3.3/causaleffect/R/wrap.dSep.R | 13 causaleffect-1.3.3/causaleffect/R/zero.children.R | 25 causaleffect-1.3.3/causaleffect/R/zzaux.effect.R | 17 causaleffect-1.3.3/causaleffect/build/vignette.rds |binary causaleffect-1.3.3/causaleffect/inst/CITATION |only causaleffect-1.3.3/causaleffect/inst/doc/causaleffect.pdf |binary causaleffect-1.3.3/causaleffect/inst/doc/simplification.ltx | 3 causaleffect-1.3.3/causaleffect/inst/doc/simplification.pdf |binary causaleffect-1.3.3/causaleffect/man/causal.effect.Rd | 98 +- causaleffect-1.3.3/causaleffect/man/causaleffect-package.Rd | 132 +-- causaleffect-1.3.3/causaleffect/man/generalize.Rd | 139 +-- causaleffect-1.3.3/causaleffect/man/get.expression.Rd | 65 - causaleffect-1.3.3/causaleffect/man/meta.transport.Rd | 129 +- causaleffect-1.3.3/causaleffect/man/parse.graphml.Rd | 40 causaleffect-1.3.3/causaleffect/man/recover.Rd | 103 +- causaleffect-1.3.3/causaleffect/man/transport.Rd | 103 +- causaleffect-1.3.3/causaleffect/man/verma.constraints.rd |only causaleffect-1.3.3/causaleffect/man/zzaux.effect.Rd | 90 +- causaleffect-1.3.3/causaleffect/vignettes/simplification.ltx | 3 78 files changed, 2075 insertions(+), 2075 deletions(-)
Title: Binary Search Tools
Description: Exposes the binary search functions of the C++ standard library (std::lower_bound, std::upper_bound) plus other convenience functions, allowing faster lookups on sorted vectors.
Author: Marco Giuliano
Maintainer: Marco Giuliano <mgiuliano.mail@gmail.com>
Diff between bsearchtools versions 0.0.59 dated 2017-01-22 and 0.0.61 dated 2017-02-22
DESCRIPTION | 8 +++---- MD5 | 11 +++++----- NAMESPACE | 48 ++++++++++++++++++++++++++++++++++++++++++-- R/RcppExports.R | 46 +++++++++++++++++++++--------------------- inst/NEWS.Rd | 13 +++++++++++ man/bsearchtools-package.Rd | 4 +-- src/bsearchtools_init.c |only 7 files changed, 93 insertions(+), 37 deletions(-)
Title: Traveling Salesperson Problem (TSP)
Description: Basic infrastructure and some algorithms for the traveling
salesperson problem (also traveling salesman problem; TSP).
The package provides some simple algorithms and
an interface to the Concorde TSP solver and its implementation of the
Chained-Lin-Kernighan heuristic. The code for Concorde
itself is not included in the package and has to be obtained separately.
Author: Michael Hahsler [aut, cre, cph],
Kurt Hornik [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between TSP versions 1.1-4 dated 2016-02-22 and 1.1-5 dated 2017-02-22
TSP-1.1-4/TSP/inst/NEWS |only TSP-1.1-4/TSP/inst/tests |only TSP-1.1-5/TSP/DESCRIPTION | 13 +-- TSP-1.1-5/TSP/MD5 | 39 ++++++----- TSP-1.1-5/TSP/NAMESPACE | 2 TSP-1.1-5/TSP/NEWS.md |only TSP-1.1-5/TSP/R/TSP.R | 26 +++---- TSP-1.1-5/TSP/R/insert_dummy.R | 55 +++------------- TSP-1.1-5/TSP/R/tour_length.R | 34 ++++------ TSP-1.1-5/TSP/R/tsp_insertion.R | 9 -- TSP-1.1-5/TSP/R/tsp_two_opt.R | 5 - TSP-1.1-5/TSP/README.md | 44 +++++++------ TSP-1.1-5/TSP/build/vignette.rds |binary TSP-1.1-5/TSP/data/USCA312.rda |binary TSP-1.1-5/TSP/data/USCA312_map.rda |binary TSP-1.1-5/TSP/data/USCA50.rda |binary TSP-1.1-5/TSP/inst/doc/TSP.pdf |binary TSP-1.1-5/TSP/man/solve_TSP.Rd | 124 ++++++++++++++++++------------------- TSP-1.1-5/TSP/src/dll.c |only TSP-1.1-5/TSP/tests/testthat |only TSP-1.1-5/TSP/tests/testthat.R | 5 + 21 files changed, 164 insertions(+), 192 deletions(-)
Title: Multivariate Peaks-over-Threshold Modelling for Spatial Extreme
Events
Description: Tools for high-dimensional peaks-over-threshold inference and simulation
of spatial extremal processes.
Author: Raphael de Fondeville [aut, cre]
Maintainer: Raphael de Fondeville <raphael.de-fondeville@epfl.ch>
Diff between mvPot versions 0.1.1 dated 2016-07-11 and 0.1.2 dated 2017-02-22
DESCRIPTION | 10 +-- MD5 | 26 ++++----- NEWS.md | 7 ++ R/censored_likelihood.R | 13 ++-- R/generating_vector.R | 13 ++-- R/mvNormQMC.R | 6 +- man/censoredLikelihood.Rd | 8 +- man/genVecQMC.Rd | 12 ++-- man/mvtNormQuasiMonteCarlo.Rd | 5 - man/scoreEstimation.Rd | 1 man/simulBrownResnick.Rd | 1 man/simulPareto.Rd | 1 man/spectralLikelihood.Rd | 1 src/mvnCppAdaptedSTL.cpp | 121 ++++++++++++++++++++++++------------------ 14 files changed, 128 insertions(+), 97 deletions(-)
Title: Fit and Deploy DECORATE Trees
Description: DECORATE (Diverse Ensemble Creation by Oppositional Relabeling
of Artificial Training Examples) builds an ensemble of J48 trees by recursively
adding artificial samples of the training data ("Melville, P., & Mooney, R. J. (2005). Creating diversity in ensembles using artificial data. Information Fusion, 6(1), 99-111. <doi:10.1016/j.inffus.2004.04.001>").
Author: Matthias Bogaert, Michel Ballings and Dirk Van den Poel
Maintainer: Matthias Bogaert <Matthias.Bogaert@UGent.Be>
Diff between DecorateR versions 0.1.0 dated 2017-02-07 and 0.1.1 dated 2017-02-22
DESCRIPTION | 8 - MD5 | 6 - R/DECORATE.R | 324 +++++++++++++++++++++++++++++------------------------------ inst/NEWS | 24 ++-- 4 files changed, 182 insertions(+), 180 deletions(-)
Title: Wiener Process Distribution Functions
Description: Provides Wiener process distribution functions,
namely the Wiener first passage time density, CDF, quantile and random
functions. Additionally supplies a modelling function (wdm) and further
methods for the resulting object.
Author: Dominik Wabersich [aut, cre]
Maintainer: Dominik Wabersich <dominik.wabersich@gmail.com>
Diff between RWiener versions 1.2-0 dated 2014-01-25 and 1.3-1 dated 2017-02-22
RWiener-1.2-0/RWiener/configure.ac |only RWiener-1.2-0/RWiener/configure.win |only RWiener-1.2-0/RWiener/man/wiener_likelihood.Rd |only RWiener-1.2-0/RWiener/man/wiener_plot.Rd |only RWiener-1.2-0/RWiener/src/Makevars.in |only RWiener-1.2-0/RWiener/src/Makevars.win |only RWiener-1.3-1/RWiener/DESCRIPTION | 22 ++--- RWiener-1.3-1/RWiener/MD5 | 34 +++++-- RWiener-1.3-1/RWiener/NAMESPACE | 95 ++++++++++++++++++--- RWiener-1.3-1/RWiener/R/deprecated.R |only RWiener-1.3-1/RWiener/R/likelihood.R |only RWiener-1.3-1/RWiener/R/misc.R |only RWiener-1.3-1/RWiener/R/plot.R |only RWiener-1.3-1/RWiener/R/scorefun.R |only RWiener-1.3-1/RWiener/R/tests.R |only RWiener-1.3-1/RWiener/R/wdm.R |only RWiener-1.3-1/RWiener/R/wienerdist.R | 109 +++++-------------------- RWiener-1.3-1/RWiener/README | 26 ++++- RWiener-1.3-1/RWiener/inst |only RWiener-1.3-1/RWiener/man/RWiener-internal.Rd | 8 + RWiener-1.3-1/RWiener/man/deprecated.Rd |only RWiener-1.3-1/RWiener/man/likelihood.Rd |only RWiener-1.3-1/RWiener/man/misc.Rd |only RWiener-1.3-1/RWiener/man/plot.Rd |only RWiener-1.3-1/RWiener/man/scorefun.Rd |only RWiener-1.3-1/RWiener/man/tests.Rd |only RWiener-1.3-1/RWiener/man/wdm.Rd |only RWiener-1.3-1/RWiener/man/wienerdist.Rd | 27 ++---- RWiener-1.3-1/RWiener/src/init.c |only 29 files changed, 175 insertions(+), 146 deletions(-)
Title: 'Rcpp' Integration for the 'Blaze' High-Performance C++ Math
Library
Description: 'Blaze' is an open-source, high-performance C++ math library
for dense and sparse arithmetic. With its state-of-the-art Smart Expression
Template implementation 'Blaze' combines the elegance and ease of use of a
domain-specific language with 'HPC'-grade performance, making it one of the most
intuitive and fastest C++ math libraries available. The 'Blaze' library offers:
- high performance through the integration of 'BLAS' libraries and manually
tuned 'HPC' math kernels - vectorization by 'SSE', 'SSE2', 'SSE3', 'SSSE3', 'SSE4',
'AVX', 'AVX2', 'AVX-512', 'FMA', and 'SVML' - parallel execution by 'OpenMP', C++11
threads and 'Boost' threads ('Boost' threads are disabled in 'RcppBlaze') - the
intuitive and easy to use API of a domain specific language - unified arithmetic
with dense and sparse vectors and matrices - thoroughly tested matrix and vector
arithmetic - completely portable, high quality C++ source code The 'RcppBlaze'
package includes the header files from the 'Blaze' library with disabling some
functionalities related to link to the thread and system libraries which make
'RcppBlaze' be a header-only library. Therefore, users do not need to install
'Blaze and' the dependency 'Boost'. 'Blaze' is licensed under the New (Revised)
BSD license, while 'RcppBlaze' (the 'Rcpp' bindings/bridge to 'Blaze') is licensed
under the GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that since
'Blaze' has committed to C++14 commit to C++14 which does not used by most R users
from version 3.0, we will use the version 2.6 of 'Blaze' which is C++98 compatible
to support the most compilers and system.
Author: Ching-Chuan Chen, Klaus Iglberger, Georg Hager, Christian Godenschwager,
Tobias Scharpff
Maintainer: Ching-Chuan Chen <zw12356@gmail.com>
Diff between RcppBlaze versions 0.1.0 dated 2017-02-20 and 0.1.1 dated 2017-02-22
DESCRIPTION | 44 +++++++++++++++++++-------------------- MD5 | 10 ++++---- R/RcppBlaze-package.R | 2 - README.md | 12 +++++++--- inst/include/blaze/util/Memory.h | 23 ++++++++++++-------- man/RcppBlaze-package.Rd | 2 - 6 files changed, 52 insertions(+), 41 deletions(-)
Title: Nonparametric Preprocessing for Parametric Casual Inference
Description: Selects matched samples of the original treated and
control groups with similar covariate distributions -- can be
used to match exactly on covariates, to match on propensity
scores, or perform a variety of other matching procedures. The
package also implements a series of recommendations offered in
Ho, Imai, King, and Stuart (2007) <DOI:10.1093/pan/mpl013>.
Author: Daniel Ho <daniel.e.ho@gmail.com>,
Kosuke Imai <kimai@Princeton.Edu>,
Gary King <king@harvard.edu>,
Elizabeth Stuart <stuart@stat.harvard.edu>
Maintainer: Kosuke Imai <kimai@Princeton.Edu>
Diff between MatchIt versions 2.4-21 dated 2013-06-27 and 2.4-22 dated 2017-02-22
MatchIt-2.4-21/MatchIt/vignettes/Makefile |only MatchIt-2.4-21/MatchIt/vignettes/asa.bst |only MatchIt-2.4-21/MatchIt/vignettes/balance.tex |only MatchIt-2.4-21/MatchIt/vignettes/dcolumn.sty |only MatchIt-2.4-21/MatchIt/vignettes/face_off.jpg |only MatchIt-2.4-21/MatchIt/vignettes/faq.tex |only MatchIt-2.4-21/MatchIt/vignettes/gk.bib |only MatchIt-2.4-21/MatchIt/vignettes/gkpubs.bib |only MatchIt-2.4-21/MatchIt/vignettes/graphics.R |only MatchIt-2.4-21/MatchIt/vignettes/html.sty |only MatchIt-2.4-21/MatchIt/vignettes/index.shtml |only MatchIt-2.4-21/MatchIt/vignettes/intro.tex |only MatchIt-2.4-21/MatchIt/vignettes/makematchH |only MatchIt-2.4-21/MatchIt/vignettes/matchit.pdf |only MatchIt-2.4-21/MatchIt/vignettes/matchit.tex |only MatchIt-2.4-21/MatchIt/vignettes/matchit2zelig.tex |only MatchIt-2.4-21/MatchIt/vignettes/matchitref.tex |only MatchIt-2.4-21/MatchIt/vignettes/mdataref.tex |only MatchIt-2.4-21/MatchIt/vignettes/notation.tex |only MatchIt-2.4-21/MatchIt/vignettes/overview.tex |only MatchIt-2.4-21/MatchIt/vignettes/plotref.tex |only MatchIt-2.4-21/MatchIt/vignettes/preprocess.tex |only MatchIt-2.4-21/MatchIt/vignettes/summaryref.tex |only MatchIt-2.4-22/MatchIt/DESCRIPTION | 32 ++++++------ MatchIt-2.4-22/MatchIt/MD5 | 51 ++++++-------------- MatchIt-2.4-22/MatchIt/NAMESPACE | 3 - MatchIt-2.4-22/MatchIt/R/discard.R | 13 +---- MatchIt-2.4-22/MatchIt/R/distance2GAM.R | 53 +++++++++++++++------ MatchIt-2.4-22/MatchIt/R/distance2nnet.R | 10 ++- MatchIt-2.4-22/MatchIt/R/distance2rpart.R | 11 +++- MatchIt-2.4-22/MatchIt/R/matchit.R | 2 MatchIt-2.4-22/MatchIt/R/matchit2cem.R | 7 +- MatchIt-2.4-22/MatchIt/R/matchit2full.R | 8 +-- MatchIt-2.4-22/MatchIt/R/matchit2genetic.R | 10 +-- MatchIt-2.4-22/MatchIt/R/matchit2optimal.R | 11 +--- MatchIt-2.4-22/MatchIt/build |only MatchIt-2.4-22/MatchIt/inst/doc |only MatchIt-2.4-22/MatchIt/man/lalonde.Rd | 5 - MatchIt-2.4-22/MatchIt/vignettes/matchit.pdf.asis |only 39 files changed, 110 insertions(+), 106 deletions(-)
Title: Interactive Dendrograms
Description: Interactive dendrogram that enables the user to select and
color clusters, to zoom and pan the dendrogram, and to visualize
the clustered data not only in a built-in heat map, but also in
'GGobi' interactive plots and user-supplied plots.
This is a backport of Qt-based 'idendro'
(<https://github.com/tsieger/idendro>) to base R graphics and
Tcl/Tk GUI.
Author: Tomas Sieger
Maintainer: Tomas Sieger <tomas.sieger@seznam.cz>
Diff between idendr0 versions 1.5.2 dated 2015-10-16 and 1.5.3 dated 2017-02-22
DESCRIPTION | 11 ++++++----- MD5 | 12 +++++++----- NEWS | 7 +++++++ R/idendro.R | 39 ++++++++++++++++++--------------------- inst |only man/idendr0-package.Rd | 13 +++++++++---- man/idendro.Rd | 7 ++++++- 7 files changed, 53 insertions(+), 36 deletions(-)
Title: API for Mixpanel
Description: Provides an interface to many endpoints of Mixpanel's Data Export, Engage and JQL API. The R functions allow for event and profile data export as well as for segmentation, retention, funnel and addiction analysis. Results are always parsed into convenient R objects. Furthermore it is possible to load and update profiles.
Author: Meinhard Ploner [aut, cre, cph],
ProSiebenSat.1 Digital GmbH [cph],
BCG Digital Ventures GmbH [cph]
Maintainer: Meinhard Ploner <meinhard.ploner@gmail.com>
Diff between RMixpanel versions 0.6-1 dated 2017-01-20 and 0.6-2 dated 2017-02-22
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/mixpanelJQLQuery.R | 14 ++++++++++---- build/partial.rdb |binary 4 files changed, 17 insertions(+), 11 deletions(-)
Title: Methods for Graphical Models and Causal Inference
Description: Functions for causal structure
learning and causal inference using graphical models. The main algorithms
for causal structure learning are PC (for observational data without hidden
variables), FCI and RFCI (for observational data with hidden variables),
and GIES (for a mix of data from observational studies
(i.e. observational data) and data from experiments
involving interventions (i.e. interventional data) without hidden
variables). For causal inference the IDA algorithm, the Generalized
Backdoor Criterion (GBC) and the Generalized Adjustment Criterion (GAC)
are implemented.
Author: Markus Kalisch [aut, cre], Alain Hauser [aut], Martin Maechler [aut],
Diego Colombo [ctb], Doris Entner [ctb], Patrik Hoyer [ctb], Antti Hyttinen [ctb],
Jonas Peters [ctb], Nicoletta Andri [ctb], Emilija Perkovic [ctb], Preetam Nandy [ctb],
Philipp Ruetimann [ctb], Daniel Stekhoven [ctb], Manuel Schuerch [ctb]
Maintainer: Markus Kalisch <kalisch@stat.math.ethz.ch>
Diff between pcalg versions 2.4-3 dated 2016-09-28 and 2.4-5 dated 2017-02-22
DESCRIPTION | 8 MD5 | 28 +- R/AllClasses.R | 475 ++++--------------------------------------------- R/gies.R | 44 ++-- R/pcalg.R | 1 build/vignette.rds |binary inst/doc/pcalgDoc.R | 26 +- inst/doc/pcalgDoc.Rnw | 22 +- inst/doc/pcalgDoc.pdf |binary man/ges.Rd | 2 man/gies.Rd | 2 src/init.c |only tests/test_bicscore.R | 105 +++++----- tests/test_gies.R | 10 - tests/test_udag2pag.R |only vignettes/pcalgDoc.Rnw | 22 +- 16 files changed, 187 insertions(+), 558 deletions(-)
Title: Tools for Reshaping Text
Description: Tools that can be used to reshape and restructure text
data.
Author: Tyler Rinker [aut, cre],
Joran Elias [ctb],
Matthew Flickinger [ctb]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between textshape versions 1.0.1 dated 2017-01-20 and 1.0.2 dated 2017-02-22
textshape-1.0.1/textshape/man/set_output.Rd |only textshape-1.0.2/textshape/DESCRIPTION | 8 textshape-1.0.2/textshape/MD5 | 89 +- textshape-1.0.2/textshape/NAMESPACE | 3 textshape-1.0.2/textshape/NEWS | 34 textshape-1.0.2/textshape/R/bind_list.R | 4 textshape-1.0.2/textshape/R/column_to_rownames.R |only textshape-1.0.2/textshape/R/combine.R | 10 textshape-1.0.2/textshape/R/duration.R | 13 textshape-1.0.2/textshape/R/from_to.R | 28 textshape-1.0.2/textshape/R/set_output.R | 118 +-- textshape-1.0.2/textshape/R/split_portion.R | 11 textshape-1.0.2/textshape/R/split_run.R | 10 textshape-1.0.2/textshape/R/split_sentence.R | 10 textshape-1.0.2/textshape/R/split_speaker.R | 10 textshape-1.0.2/textshape/R/split_token.R | 14 textshape-1.0.2/textshape/R/split_transcript.R | 10 textshape-1.0.2/textshape/R/split_word.R | 11 textshape-1.0.2/textshape/R/tidy_colo_dtm.R | 36 textshape-1.0.2/textshape/R/tidy_dtm.R | 44 - textshape-1.0.2/textshape/R/tidy_list.R | 65 + textshape-1.0.2/textshape/R/tidy_table.R | 11 textshape-1.0.2/textshape/R/tidy_vector.R | 11 textshape-1.0.2/textshape/R/utils.R | 28 textshape-1.0.2/textshape/README.md | 445 ++++++------ textshape-1.0.2/textshape/data/DATA.rda |binary textshape-1.0.2/textshape/data/hamlet.rda |binary textshape-1.0.2/textshape/data/simple_dtm.rda |binary textshape-1.0.2/textshape/inst/CITATION | 4 textshape-1.0.2/textshape/inst/figure/unnamed-chunk-7-1.png |binary textshape-1.0.2/textshape/inst/figure/unnamed-chunk-8-1.png |binary textshape-1.0.2/textshape/man/column_to_rownames.Rd |only textshape-1.0.2/textshape/man/combine.Rd | 10 textshape-1.0.2/textshape/man/duration.Rd | 13 textshape-1.0.2/textshape/man/from_to.Rd | 13 textshape-1.0.2/textshape/man/split_portion.Rd | 10 textshape-1.0.2/textshape/man/split_run.Rd | 10 textshape-1.0.2/textshape/man/split_sentence.Rd | 10 textshape-1.0.2/textshape/man/split_speaker.Rd | 10 textshape-1.0.2/textshape/man/split_token.Rd | 10 textshape-1.0.2/textshape/man/split_transcript.Rd | 10 textshape-1.0.2/textshape/man/split_word.Rd | 10 textshape-1.0.2/textshape/man/tidy_colo_dtm.Rd | 11 textshape-1.0.2/textshape/man/tidy_dtm.Rd | 11 textshape-1.0.2/textshape/man/tidy_list.Rd | 26 textshape-1.0.2/textshape/man/tidy_table.Rd | 10 textshape-1.0.2/textshape/man/tidy_vector.Rd | 10 47 files changed, 526 insertions(+), 675 deletions(-)
Title: Text Cleaning Tools
Description: Tools to clean and process text. Tools are geared at
checking for substrings that are not optimal for analysis and
replacing or removing them with more analysis friendly
substrings. For example, emoticons are often used in text but
not always easily handled by analysis algorithms. The
'replace_emoticon' function replaces emoticons with word
equivalents.
Author: Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between textclean versions 0.3.0 dated 2017-01-22 and 0.3.1 dated 2017-02-22
DESCRIPTION | 21 ++-- MD5 | 40 ++++--- NAMESPACE | 1 NEWS | 16 +++ R/filter_row.R | 1 R/mgsub.R | 10 - R/replace_contraction.R | 2 R/replace_emoticon.R | 6 - R/replace_html.R | 2 R/replace_non_ascii.R | 2 R/replace_number.R | 2 R/replace_ordinal.R | 2 R/replace_tokens.R |only R/swap.R | 2 R/utils.R | 27 +++++ README.md | 246 ++++++++++++++++++++++++++++++++---------------- data/DATA.rda |binary inst/CITATION | 4 man/mgsub.Rd | 5 man/replace_emoticon.Rd | 4 man/replace_tokens.Rd |only man/swap.Rd | 2 22 files changed, 266 insertions(+), 129 deletions(-)
Title: Experimental Subset of 'spatstat' Utilities
Description: This is an experimental package containing a subset of 'spatstat'.
Author: Adrian Baddeley [aut, cre],
Rolf Turner [aut],
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.utils versions 1.2-8 dated 2017-02-16 and 1.3-2 dated 2017-02-22
spatstat.utils-1.2-8/spatstat.utils/README.md |only spatstat.utils-1.3-2/spatstat.utils/DESCRIPTION | 8 +- spatstat.utils-1.3-2/spatstat.utils/MD5 | 18 ++--- spatstat.utils-1.3-2/spatstat.utils/NAMESPACE | 3 spatstat.utils-1.3-2/spatstat.utils/R/xycircle.R | 6 - spatstat.utils-1.3-2/spatstat.utils/R/xysegment.R | 36 +++++----- spatstat.utils-1.3-2/spatstat.utils/man/check.nmatrix.Rd |only spatstat.utils-1.3-2/spatstat.utils/man/check.nvector.Rd | 2 spatstat.utils-1.3-2/spatstat.utils/man/primefactors.Rd | 8 ++ spatstat.utils-1.3-2/spatstat.utils/man/spatstat.utils-internal.Rd | 2 spatstat.utils-1.3-2/spatstat.utils/tests |only 11 files changed, 53 insertions(+), 30 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: Stable Isotope Bayesian Ellipses in R
Description: Fits bi-variate ellipses to stable isotope data using Bayesian
inference with the aim being to describe and compare their isotopic
niche.
Author: Andrew Jackson and Andrew Parnell
Maintainer: Andrew Jackson <a.jackson@tcd.ie>
Diff between SIBER versions 2.0.3 dated 2016-08-03 and 2.1.0 dated 2017-02-22
DESCRIPTION | 13 - MD5 | 96 +++++---- NAMESPACE | 5 NEWS.md | 16 + R/addEllipse.R | 76 +++++-- R/bayesianOverlap.R |only R/ellipseInOut.R |only R/ellipsoidTranform.R |only R/generateSiberGroup.R | 5 R/maxLikOverlap.R |only R/pointsToEllipsoid.R |only R/sigmaSEA.R | 25 +- build/vignette.rds |binary inst/doc/Customising-Plots-Manually.Rmd | 6 inst/doc/Customising-Plots-Manually.html | 273 ++++++++++------------------ inst/doc/Ellipse-Overlap.R |only inst/doc/Ellipse-Overlap.Rmd |only inst/doc/Ellipse-Overlap.html |only inst/doc/Introduction-to-SIBER.R | 22 -- inst/doc/Introduction-to-SIBER.Rmd | 26 +- inst/doc/Introduction-to-SIBER.html | 20 +- inst/doc/Points-Inside-Outside-Ellipse.R |only inst/doc/Points-Inside-Outside-Ellipse.Rmd |only inst/doc/Points-Inside-Outside-Ellipse.html |only man/addEllipse.Rd | 33 ++- man/bayesianLayman.Rd | 1 man/bayesianOverlap.Rd |only man/communityMetricsML.Rd | 1 man/createSiberObject.Rd | 1 man/demo.siber.data.Rd | 1 man/ellipseBackTransform.Rd | 1 man/ellipseInOut.Rd |only man/ellipsoidTransform.Rd |only man/extractPosteriorMeans.Rd | 1 man/fitEllipse.Rd | 1 man/genCircle.Rd | 1 man/generateSiberCommunity.Rd | 1 man/generateSiberData.Rd | 1 man/generateSiberGroup.Rd | 1 man/groupMetricsML.Rd | 1 man/hullArea.Rd | 1 man/laymanMetrics.Rd | 1 man/maxLikOverlap.Rd |only man/plotCommunityHulls.Rd | 1 man/plotGroupEllipses.Rd | 1 man/plotGroupHulls.Rd | 1 man/plotSiberObject.Rd | 1 man/pointsToEllipsoid.Rd |only man/posteriorSEA.Rd | 1 man/siberConvexhull.Rd | 1 man/siberDensityPlot.Rd | 2 man/siberEllipses.Rd | 1 man/siberMVN.Rd | 1 man/sigmaSEA.Rd | 14 - vignettes/Customising-Plots-Manually.Rmd | 6 vignettes/Ellipse-Overlap.Rmd |only vignettes/Introduction-to-SIBER.Rmd | 26 +- vignettes/Points-Inside-Outside-Ellipse.Rmd |only 58 files changed, 329 insertions(+), 357 deletions(-)
Title: Running OpenBUGS from R
Description: Using this package,
it is possible to call a BUGS model, summarize inferences and
convergence in a table and graph, and save the simulations in arrays for easy access
in R.
Author: originally written as R2WinBUGS by Andrew Gelman <gelman@stat.columbia.edu>;
changes and packaged by Sibylle Sturtz <sturtz@statistik.tu-dortmund.de>
and Uwe Ligges <ligges@statistik.tu-dortmund.de>.
With considerable contributions by Gregor Gorjanc <gregor.gorjanc@bfro.uni-lj.si>
and Jouni Kerman <kerman@stat.columbia.edu>.
Adapted to R2OpenBUGS from R2WinBUGS by Neal Thomas.
Maintainer: Neal Thomas <snthomas99@gmail.com>
Diff between R2OpenBUGS versions 3.2-3.1 dated 2015-04-07 and 3.2-3.2 dated 2017-02-22
R2OpenBUGS-3.2-3.1/R2OpenBUGS/data/schools.txt.gz |only R2OpenBUGS-3.2-3.2/R2OpenBUGS/DESCRIPTION | 10 +++++----- R2OpenBUGS-3.2-3.2/R2OpenBUGS/MD5 | 18 +++++++++--------- R2OpenBUGS-3.2-3.2/R2OpenBUGS/NAMESPACE | 5 +++++ R2OpenBUGS-3.2-3.2/R2OpenBUGS/R/attach.all.R | 2 +- R2OpenBUGS-3.2-3.2/R2OpenBUGS/R/print.bugs.R | 4 ++-- R2OpenBUGS-3.2-3.2/R2OpenBUGS/build/vignette.rds |binary R2OpenBUGS-3.2-3.2/R2OpenBUGS/data/schools.txt |only R2OpenBUGS-3.2-3.2/R2OpenBUGS/inst/NEWS | 3 +++ R2OpenBUGS-3.2-3.2/R2OpenBUGS/inst/doc/R2OpenBUGS.pdf |binary R2OpenBUGS-3.2-3.2/R2OpenBUGS/man/bugs.Rd | 8 +++++--- 11 files changed, 30 insertions(+), 20 deletions(-)
Title: R Interface for H2O
Description: R scripting functionality for H2O, the open source
math engine for big data that computes parallel distributed
machine learning algorithms such as generalized linear models,
gradient boosting machines, random forests, and neural networks
(deep learning) within various cluster environments.
Author: The H2O.ai team
Maintainer: Tom Kraljevic <tomk@0xdata.com>
Diff between h2o versions 3.10.3.3 dated 2017-02-03 and 3.10.3.6 dated 2017-02-22
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/classes.R | 2 +- R/models.R | 2 +- inst/buildnum.txt | 2 +- man/h2o-package.Rd | 4 ++-- 6 files changed, 14 insertions(+), 14 deletions(-)
Title: Generalized Dynamic Principal Components
Description: Functions to compute the Generalized Dynamic Principal Components
introduced in Peña and Yohai (2016) <DOI:10.1080/01621459.2015.1072542>.
Author: Daniel Peña <daniel.pena@uc3m.es>,
Ezequiel Smucler <ezequiels.90@gmail.com>,
Victor Yohai <vyohai@dm.uba.ar>
Maintainer: Ezequiel Smucler <ezequiels.90@gmail.com>
Diff between gdpc versions 1.0.1 dated 2017-01-19 and 1.0.2 dated 2017-02-22
DESCRIPTION | 11 ++++++----- MD5 | 17 +++++++++-------- NAMESPACE | 8 ++++---- NEWS | 7 +++++++ R/autoGDPC.R | 8 ++++---- R/classGDPC.R | 26 ++++++++++++++++++++------ man/fitted.gdpcs.Rd | 2 +- man/gdpc-package.Rd | 6 +++--- man/plot.gdpcs.Rd | 3 ++- src/registerDynamicSymbols.c |only 10 files changed, 56 insertions(+), 32 deletions(-)
Title: Contains an Administrative-Level-1 Map of the World
Description: Contains an administrative-level-1 map of the world.
Administrative-level-1 is the generic term for the largest sub-national
subdivision of a country. This package was created for use with the
choroplethr package.
Author: Ari Lamstein <ari@lamsteinconsulting.com>
Maintainer: Ari Lamstein <ari@lamsteinconsulting.com>
Diff between choroplethrAdmin1 versions 1.1.0 dated 2015-12-30 and 1.1.1 dated 2017-02-22
DESCRIPTION | 17 +++++++---------- MD5 | 18 +++++++++--------- R/admin1.R | 2 +- README.md | 22 +++++++++------------- man/admin1.map.Rd | 1 - man/admin1.regions.Rd | 1 - man/admin1_map.Rd | 1 - man/get_admin1_countries.Rd | 1 - man/get_admin1_map.Rd | 1 - man/get_admin1_regions.Rd | 1 - 10 files changed, 26 insertions(+), 39 deletions(-)
More information about choroplethrAdmin1 at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-13 0.2.0