Title: Drawing Hasse Diagram
Description: Drawing Hasse diagram - visualization of transitive reduction of a finite partially ordered set.
Author: Krzysztof Ciomek
Maintainer: Krzysztof Ciomek <k.ciomek@gmail.com>
Diff between hasseDiagram versions 0.1.2 dated 2017-01-15 and 0.1.3 dated 2017-02-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 1 + R/hasse.R | 1 + man/hasseDiagram-package.Rd | 4 ++-- 5 files changed, 12 insertions(+), 10 deletions(-)
Title: Multiple Heat Maps for Projected Coordinates
Description: Functions for displaying multiple images with a color
scale, i.e., heat maps, possibly with projected coordinates. The
package relies on the base graphics system, so graphics are
rendered rapidly.
Author: Joshua French
Maintainer: Joshua French <joshua.french@ucdenver.edu>
Diff between autoimage versions 1.1 dated 2017-01-26 and 1.2 dated 2017-02-23
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 5 ++++- R/narccap.R | 25 +++++++++++++++++-------- inst/doc/vignette.Rmd | 15 +++++++++++---- inst/doc/vignette.html | 19 +++++++++++++------ man/narccap.Rd | 25 +++++++++++++++++-------- vignettes/vignette.Rmd | 15 +++++++++++---- 8 files changed, 84 insertions(+), 42 deletions(-)
Title: Gower's Distance
Description: Compute Gower's distance (or similarity) coefficient between records. Compute
the top-n matches between records. Core algorithms are executed in parallel on systems
supporting OpenMP.
Author: Mark van der Loo [aut, cre]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between gower versions 0.1.1 dated 2016-08-26 and 0.1.2 dated 2017-02-23
DESCRIPTION | 10 +++++----- MD5 | 21 +++++++++++---------- NAMESPACE | 3 +-- NEWS | 4 ++++ R/gower-pkg.R | 2 +- R/gower.R | 4 ++-- inst/doc/intro.html | 4 ++-- man/gower-package.Rd | 1 - man/gower_dist.Rd | 2 +- man/gower_topn.Rd | 1 - src/R_register_native.c |only src/gower.c | 6 +++++- 12 files changed, 32 insertions(+), 26 deletions(-)
Title: A Package for Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data, in
particular representation, manipulation and simulation of multistate
data - the Lexis suite of functions, which includes interfaces to
'mstate', 'etm' and 'cmprsk' packages.
Also contains functions for Age-Period-Cohort and Lee-Carter
modeling and a function for interval censored data and some useful
functions for tabulation and plotting, as well as a number of
epidemiological datasets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <b@bxc.dk>
Diff between Epi versions 2.7 dated 2016-10-04 and 2.10 dated 2017-02-23
Epi-2.10/Epi/CHANGES | 32 +++ Epi-2.10/Epi/DESCRIPTION | 16 - Epi-2.10/Epi/MD5 | 74 ++++---- Epi-2.10/Epi/NAMESPACE | 2 Epi-2.10/Epi/R/clogistic.R | 5 Epi-2.10/Epi/R/crr.Lexis.r | 18 +- Epi-2.10/Epi/R/lls.R | 19 +- Epi-2.10/Epi/R/mcutLexis.R |only Epi-2.10/Epi/build/vignette.rds |binary Epi-2.10/Epi/data/DMepi.rda |only Epi-2.10/Epi/inst/doc/Follow-up.R | 318 ++++++++++++++++++------------------ Epi-2.10/Epi/inst/doc/Follow-up.pdf |binary Epi-2.10/Epi/inst/doc/index.html | 3 Epi-2.10/Epi/inst/doc/simLexis.R | 24 +- Epi-2.10/Epi/inst/doc/simLexis.pdf |binary Epi-2.10/Epi/inst/doc/simLexis.rnw | 1 Epi-2.10/Epi/inst/doc/yll.R |only Epi-2.10/Epi/inst/doc/yll.pdf |only Epi-2.10/Epi/inst/doc/yll.rnw |only Epi-2.10/Epi/man/DMepi.Rd |only Epi-2.10/Epi/man/Icens.Rd | 2 Epi-2.10/Epi/man/Ns.Rd | 2 Epi-2.10/Epi/man/cal.yr.Rd | 2 Epi-2.10/Epi/man/cutLexis.Rd | 2 Epi-2.10/Epi/man/erl.Rd | 28 +-- Epi-2.10/Epi/man/fit.mult.Rd | 2 Epi-2.10/Epi/man/foreign.Lexis.Rd | 2 Epi-2.10/Epi/man/gen.exp.Rd | 22 +- Epi-2.10/Epi/man/mcutLexis.Rd |only Epi-2.10/Epi/man/ncut.Rd | 2 Epi-2.10/Epi/man/nice.Rd | 2 Epi-2.10/Epi/man/plotEst.Rd | 2 Epi-2.10/Epi/man/stack.Lexis.Rd | 2 Epi-2.10/Epi/man/summary.Lexis.rd | 4 Epi-2.10/Epi/src/chinv2.c | 4 Epi-2.10/Epi/src/cholesky2.c | 4 Epi-2.10/Epi/src/chsolve2.c | 4 Epi-2.10/Epi/src/clogit.c | 6 Epi-2.10/Epi/src/init.c |only Epi-2.10/Epi/vignettes/index.html | 3 Epi-2.10/Epi/vignettes/simLexis.rnw | 7 Epi-2.10/Epi/vignettes/yll.rnw |only Epi-2.7/Epi/R/zzz.R |only 43 files changed, 336 insertions(+), 278 deletions(-)
Title: Compare Detrital Zircon Suites
Description: Compare detrital zircon suites by uploading univariate,
U-Pb age, or bivariate, U-Pb age and Lu-Hf data, in a 'shiny'-based
user-interface. Outputs publication quality figures using 'ggplot2', and
tables of statistics currently in use in the detrital zircon geochronology
community.
Author: Magnus Kristoffersen [aut, cre]
Maintainer: Magnus Kristoffersen <magnus.kristoffersen@geo.uio.no>
Diff between detzrcr versions 0.1.2 dated 2016-10-28 and 0.1.3 dated 2017-02-23
DESCRIPTION | 10 MD5 | 120 +- NEWS.md | 6 R/calculations.R | 1 R/plotting.R | 2 README.md | 2 build |only inst/CITATION | 4 inst/doc |only inst/extdata/Natal_group.csv | 1911 +++++++++++++++++++++++++------------- inst/shiny-apps/detzrcr_app/app.R | 13 man/Natal_group.Rd | 1 man/calc_dens.Rd | 1 man/calc_dens_hist.Rd | 1 man/calc_dkw.Rd | 1 man/calc_hf.Rd | 1 man/calc_o_param.Rd | 1 man/calc_quantiles.Rd | 1 man/check_conc.Rd | 1 man/combine_matrices.Rd | 1 man/dzr_mix.Rd | 1 man/find_plot_max.Rd | 1 man/find_plot_min.Rd | 1 man/find_plot_min_max.Rd | 1 man/hf_lines.Rd | 1 man/hfhf_chur.Rd | 1 man/hfhf_dm.Rd | 1 man/lambda_lu.Rd | 1 man/lambda_u235.Rd | 1 man/lambda_u238.Rd | 1 man/luhf_chur.Rd | 1 man/luhf_dm.Rd | 1 man/luhf_zrc.Rd | 1 man/make_tiling.Rd | 1 man/o_param_matrix_age.Rd | 1 man/o_param_matrix_tdm.Rd | 1 man/plot_axis_lim.Rd | 1 man/plot_bw_theme.Rd | 1 man/plot_dens.Rd | 1 man/plot_dens_hist.Rd | 1 man/plot_ecdf.Rd | 1 man/plot_hf.Rd | 1 man/plot_labels.Rd | 1 man/plot_point_scale.Rd | 1 man/plot_quantiles.Rd | 1 man/plot_text_options.Rd | 1 man/plot_tile.Rd | 1 man/populate_matrix.Rd | 1 man/quant_bounds.Rd | 1 man/run_detzrcr.Rd | 1 man/satkoski_1d.Rd | 1 man/satkoski_1d_matrix.Rd | 1 man/satkoski_2d.Rd | 1 man/satkoski_2d_matrix.Rd | 1 man/tile_func.Rd | 1 man/tiling.Rd | 1 man/u238_u235_ratio.Rd | 1 vignettes |only 58 files changed, 1382 insertions(+), 733 deletions(-)
Title: Best Subset GLM
Description: Best subset glm using information criteria or cross-validation.
Author: A.I. McLeod and Changjiang Xu
Maintainer: A.I. McLeod <aimcleod@uwo.ca>
Diff between bestglm versions 0.35 dated 2017-02-06 and 0.36 dated 2017-02-23
bestglm-0.35/bestglm/R/bestglm-internal.R |only bestglm-0.35/bestglm/src |only bestglm-0.36/bestglm/DESCRIPTION | 12 ++++++------ bestglm-0.36/bestglm/MD5 | 23 ++++++++++++++++------- bestglm-0.36/bestglm/NAMESPACE | 18 ++++++++++-------- bestglm-0.36/bestglm/NEWS | 5 +++++ bestglm-0.36/bestglm/R/glmnetPredict.R |only bestglm-0.36/bestglm/R/grpregPredict.R |only bestglm-0.36/bestglm/R/sphereX.R |only bestglm-0.36/bestglm/R/to.binary.R | 15 ++++----------- bestglm-0.36/bestglm/data/Iowa.rda |only bestglm-0.36/bestglm/man/Iowa.Rd |only bestglm-0.36/bestglm/man/NNPredict.Rd |only bestglm-0.36/bestglm/man/bestglm-package.Rd | 3 ++- bestglm-0.36/bestglm/man/glmnetGridTable.Rd |only bestglm-0.36/bestglm/man/glmnetPredict.Rd |only bestglm-0.36/bestglm/man/grpregPredict.Rd |only bestglm-0.36/bestglm/man/sphereX.Rd |only bestglm-0.36/bestglm/man/trainTestPartition.Rd |only 19 files changed, 43 insertions(+), 33 deletions(-)
Title: Designing Multi-Arm Multi-Stage Studies
Description: Designing multi-arm multi-stage studies with normal endpoints and known variance.
Author: Thomas Jaki <jaki.thomas@gmail.com>, Dominic Magirr <d.magirr@gmail.com>, Philip Pallmann <p.pallmann@lancaster.ac.uk>
Maintainer: Thomas Jaki <jaki.thomas@gmail.com>
Diff between MAMS versions 1.0 dated 2016-07-19 and 1.01 dated 2017-02-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/mams.sim.R | 8 +++++++- inst/CITATION | 2 +- inst/NEWS | 5 +++++ 5 files changed, 21 insertions(+), 10 deletions(-)
Title: Linguistic Typology and Mapping
Description: Provides R with the Glottolog database <http://glottolog.org> and some more abilities for purposes of linguistic cartography. The Glottolog database contains the catalogue of languages of the world. This package helps researchers to make a linguistic maps, using philosophy of the Cross-Linguistic Linked Data project <http://clld.org/>, which allows for while at the same time facilitating uniform access to the data across publications. A tutorial for this package is available on GitHub pages <https://agricolamz.github.io/lingtypology/> and package vignette.
Author: George Moroz
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between lingtypology versions 1.0.1 dated 2017-01-29 and 1.0.2 dated 2017-02-23
DESCRIPTION | 9 MD5 | 70 +++---- NAMESPACE | 9 NEWS | 13 + R/aff.lang.R | 21 +- R/area.lang.R | 21 +- R/country.lang.R | 32 +-- R/is.glottolog.R | 51 ++--- R/iso.lang.R | 20 +- R/lang.aff.R | 28 +- R/lang.country.R | 41 ++-- R/lang.iso.R | 20 +- R/lat.lang.R | 24 +- R/long.lang.R | 24 +- R/makelink.R | 22 +- R/map.feature.R | 373 +++++++++++++++++++-------------------- README.md | 10 - data/glottolog.modified.RData |binary data/glottolog.original.RData |binary inst/doc/lingtypology.R | 57 +++++ inst/doc/lingtypology.Rmd | 166 +++++++++++++---- inst/doc/lingtypology.html | 283 +++++++++++++++++++---------- inst/doc/manual/lingtypology.pdf |binary man/aff.lang.Rd | 6 man/area.lang.Rd | 6 man/country.lang.Rd | 8 man/is.glottolog.Rd | 8 man/iso.lang.Rd | 6 man/lang.aff.Rd | 8 man/lang.country.Rd | 10 - man/lang.iso.Rd | 6 man/lat.lang.Rd | 10 - man/long.lang.Rd | 10 - man/makelink.Rd | 2 man/map.feature.Rd | 51 ++++- vignettes/lingtypology.Rmd | 166 +++++++++++++---- 36 files changed, 1008 insertions(+), 583 deletions(-)
More information about InvasionCorrection at CRAN
Permanent link
Title: Spatial Dependence: Weighting Schemes, Statistics and Models
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by distance and
tessellations, for summarizing these objects, and for permitting their
use in spatial data analysis, including regional aggregation by minimum
spanning tree; a collection of tests for spatial autocorrelation,
including global Moran's I, APLE, Geary's C, Hubert/Mantel general cross
product statistic, Empirical Bayes estimates and Assunção/Reis Index,
Getis/Ord G and multicoloured join count statistics, local Moran's I
and Getis/Ord G, saddlepoint approximations and exact tests for global
and local Moran's I; and functions for estimating spatial simultaneous
autoregressive (SAR) lag and error models, impact measures for lag
models, weighted and unweighted SAR and CAR spatial regression models,
semi-parametric and Moran eigenvector spatial filtering, GM SAR error
models, and generalized spatial two stage least squares models.
Author: Roger Bivand [cre, aut],
Micah Altman [ctb],
Luc Anselin [ctb],
Renato Assunção [ctb],
Olaf Berke [ctb],
Andrew Bernat [ctb],
Guillaume Blanchet [ctb],
Eric Blankmeyer [ctb],
Marilia Carvalho [ctb],
Bjarke Christensen [ctb],
Yongwan Chun [ctb],
Carsten Dormann [ctb],
Stéphane Dray [ctb],
Virgilio Gómez-Rubio [ctb],
Martin Gubri [ctb],
Rein Halbersma [ctb],
Elias Krainski [ctb],
Pierre Legendre [ctb],
Nicholas Lewin-Koh [ctb],
Hongfei Li [ctb],
Jielai Ma [ctb],
Abhirup Mallik [ctb, trl],
Giovanni Millo [ctb],
Werner Mueller [ctb],
Hisaji Ono [ctb],
Pedro Peres-Neto [ctb],
Gianfranco Piras [ctb],
Markus Reder [ctb],
Michael Tiefelsdorf [ctb],
Danlin Yu [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spdep versions 0.6-10 dated 2017-02-21 and 0.6-11 dated 2017-02-23
ChangeLog | 9 +++++++++ DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 11 ++++++++++- inst/ChangeLog | 9 +++++++++ inst/doc/CO69.pdf |binary inst/doc/SpatialFiltering.pdf |binary inst/doc/nb.pdf |binary inst/doc/nb_igraph.html | 7 ++++++- inst/doc/sids.pdf |binary 10 files changed, 47 insertions(+), 15 deletions(-)
Title: IUCN Redlisting Tools
Description: Includes algorithms to facilitate the assessment of extinction
risk of species according to the IUCN (International Union for Conservation of
Nature, see <http://www.iucn.org> for more information) red list criteria.
Author: Pedro Cardoso
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Diff between red versions 0.2.0 dated 2016-12-07 and 1.0.0 dated 2017-02-23
red-0.2.0/red/data/data.layers.rda |only red-0.2.0/red/data/data.records.rda |only red-0.2.0/red/data/data.sp.rda |only red-0.2.0/red/data/data.worldborders.rda |only red-0.2.0/red/man/countr.Rd |only red-0.2.0/red/man/data.layers.Rd |only red-0.2.0/red/man/data.records.Rd |only red-0.2.0/red/man/data.sp.Rd |only red-0.2.0/red/man/data.worldborders.Rd |only red-1.0.0/red/DESCRIPTION | 18 red-1.0.0/red/MD5 | 70 +- red-1.0.0/red/NAMESPACE | 6 red-1.0.0/red/R/red.R | 827 +++++++++++++++++++------------ red-1.0.0/red/data/red.distribution.rda |only red-1.0.0/red/data/red.layers.rda |only red-1.0.0/red/data/red.records.rda |only red-1.0.0/red/data/worldborders.rda |only red-1.0.0/red/man/aoo.Rd | 14 red-1.0.0/red/man/countries.Rd |only red-1.0.0/red/man/elevation.Rd |only red-1.0.0/red/man/eoo.Rd | 10 red-1.0.0/red/man/kml.Rd | 2 red-1.0.0/red/man/map.draw.Rd | 12 red-1.0.0/red/man/map.easy.Rd | 35 - red-1.0.0/red/man/map.habitat.Rd | 14 red-1.0.0/red/man/map.points.Rd | 14 red-1.0.0/red/man/map.sdm.Rd | 32 - red-1.0.0/red/man/outliers.Rd | 11 red-1.0.0/red/man/raster.clean.Rd | 6 red-1.0.0/red/man/raster.east.Rd | 8 red-1.0.0/red/man/raster.lat.Rd | 4 red-1.0.0/red/man/raster.long.Rd | 4 red-1.0.0/red/man/raster.north.Rd | 8 red-1.0.0/red/man/raster.read.Rd | 20 red-1.0.0/red/man/raster.reduce.Rd | 2 red-1.0.0/red/man/records.Rd | 8 red-1.0.0/red/man/red.distribution.Rd |only red-1.0.0/red/man/red.getDir.Rd |only red-1.0.0/red/man/red.layers.Rd |only red-1.0.0/red/man/red.records.Rd |only red-1.0.0/red/man/red.setDir.Rd |only red-1.0.0/red/man/red.setup.Rd | 6 red-1.0.0/red/man/rli.Rd | 8 red-1.0.0/red/man/rli.multi.Rd | 8 red-1.0.0/red/man/rli.sampled.Rd |only red-1.0.0/red/man/thin.Rd | 6 red-1.0.0/red/man/worldborders.Rd |only 47 files changed, 712 insertions(+), 441 deletions(-)
Title: Generation of Regular Factorial Designs
Description: Automatic generation of regular factorial designs, including fractional designs, orthogonal block designs, row-column designs and split-plots.
Author: Hervé Monod, Annie Bouvier, André Kobilinsky
Maintainer: Annie Bouvier <Annie.Bouvier@inra.fr>
Diff between planor versions 1.0-1 dated 2016-06-30 and 1.3-6 dated 2017-02-23
planor-1.0-1/planor/R/debug.R |only planor-1.3-6/planor/DESCRIPTION | 23 planor-1.3-6/planor/MD5 | 101 planor-1.3-6/planor/NAMESPACE | 13 planor-1.3-6/planor/NEWS | 70 planor-1.3-6/planor/R/basep.R | 217 planor-1.3-6/planor/R/designfactors.R | 25 planor-1.3-6/planor/R/designkey.R | 51 planor-1.3-6/planor/R/generic.R | 23 planor-1.3-6/planor/R/keymatrix.R | 109 planor-1.3-6/planor/R/keyring.R | 25 planor-1.3-6/planor/R/listofdesignkeys.R | 30 planor-1.3-6/planor/R/listofkeyrings.R | 35 planor-1.3-6/planor/R/makedesignkey.R | 29 planor-1.3-6/planor/R/planor.R | 556 - planor-1.3-6/planor/R/planordesign.R | 29 planor-1.3-6/planor/R/randomize.R | 23 planor-1.3-6/planor/R/zzz.R | 23 planor-1.3-6/planor/inst/doc/PlanorInRmanual.pdf | 3185 +++++----- planor-1.3-6/planor/inst/doc/planor-manual.pdf |binary planor-1.3-6/planor/inst/doc/planorA.pdf | 3846 ++++++------- planor-1.3-6/planor/inst/doc/planorVignette.pdf | 1559 ++--- planor-1.3-6/planor/man/planor.designkey.Rd | 13 planor-1.3-6/planor/man/regular.design.Rd | 3 planor-1.3-6/planor/src/Makevars |only planor-1.3-6/planor/src/inverses_basep.cpp |only planor-1.3-6/planor/src/inverses_basep.h |only planor-1.3-6/planor/src/kernelcheck.cpp |only planor-1.3-6/planor/src/kernelcheck.h |only planor-1.3-6/planor/src/planor.cpp | 1555 +++-- planor-1.3-6/planor/src/subgroup.cpp |only planor-1.3-6/planor/src/subgroup.h |only planor-1.3-6/planor/src/util.cpp |only planor-1.3-6/planor/src/util.h |only planor-1.3-6/planor/src/weightorder.cpp |only planor-1.3-6/planor/src/weightorder.h |only planor-1.3-6/planor/tests/HM2.R |only planor-1.3-6/planor/tests/HM2.Rout.save |only planor-1.3-6/planor/tests/Kobi0.Rout.save | 21 planor-1.3-6/planor/tests/Kobi1.Rout.save | 11 planor-1.3-6/planor/tests/Kobi2.Rout.save | 18 planor-1.3-6/planor/tests/Kobi3.Rout.save | 36 planor-1.3-6/planor/tests/KobiRecursive.Rout.save | 4 planor-1.3-6/planor/tests/NewKobi1.R | 4 planor-1.3-6/planor/tests/NewKobi1.Rout.save | 66 planor-1.3-6/planor/tests/Touzeau2.R | 11 planor-1.3-6/planor/tests/Touzeau2.Rout.save | 134 planor-1.3-6/planor/tests/exdes.Rda |only planor-1.3-6/planor/tests/exkey.Rda |only planor-1.3-6/planor/tests/exsimple.Rout.save | 35 planor-1.3-6/planor/tests/generate.Rout.save | 64 planor-1.3-6/planor/tests/haies.Rout.save | 24 planor-1.3-6/planor/tests/hmsym.R |only planor-1.3-6/planor/tests/hmsym.Rout.save |only planor-1.3-6/planor/tests/hmtestsRandomize.R | 1 planor-1.3-6/planor/tests/hmtestsRandomize.Rout.save |only planor-1.3-6/planor/tests/mixkey.Rout.save | 18 planor-1.3-6/planor/tests/noineligible.Rout.save | 14 planor-1.3-6/planor/tests/planor-stefano2.R |only planor-1.3-6/planor/tests/planor-stefano2.Rout.save |only planor-1.3-6/planor/tests/planor-stefano2.random.R |only planor-1.3-6/planor/tests/planor-stefano2.random.Rout.save |only planor-1.3-6/planor/tests/robot.R |only planor-1.3-6/planor/tests/robot.Rout.save |only 64 files changed, 6356 insertions(+), 5648 deletions(-)
Title: Optimum Contribution Selection and Population Genetics
Description: A framework for the optimization of breeding programs via optimum contribution selection. An easy to use set of function for computation of optimum contributions of selection candidates, and of the population genetic parameters to be optimized. These parameters can be estimated using pedigree or genotype information, and include kinships, kinships at native haplotype segments, and breed composition of crossbred individuals. They are suitable for managing genetic diversity, removing introgressed genetic material, and accelerating genetic gain. Additionally, functions are provided for computing genetic contributions from ancestors, inbreeding coefficients, the native effective size, the native genome equivalent, pedigree completeness, and for preparing and plotting pedigrees.
Author: Robin Wellmann
Maintainer: Robin Wellmann <r.wellmann@uni-hohenheim.de>
Diff between optiSel versions 0.1 dated 2016-06-27 and 0.3 dated 2017-02-23
optiSel-0.1/optiSel/R/breedcont.R |only optiSel-0.1/optiSel/R/kin.R |only optiSel-0.1/optiSel/man/Kinship.Rd |only optiSel-0.1/optiSel/man/breedcont.Rd |only optiSel-0.1/optiSel/man/kin.Rd |only optiSel-0.3/optiSel/DESCRIPTION | 23 - optiSel-0.3/optiSel/MD5 | 134 +++++-- optiSel-0.3/optiSel/NAMESPACE | 46 ++ optiSel-0.3/optiSel/R/RcppExports.R |only optiSel-0.3/optiSel/R/completeness.R | 48 +- optiSel-0.3/optiSel/R/conttac.R | 44 +- optiSel-0.3/optiSel/R/freqlist.R |only optiSel-0.3/optiSel/R/getcskip.R |only optiSel-0.3/optiSel/R/getskip.R |only optiSel-0.3/optiSel/R/haplofreq.R |only optiSel-0.3/optiSel/R/help.opticont.R |only optiSel-0.3/optiSel/R/help.opticont4mb.R |only optiSel-0.3/optiSel/R/kinlist.R |only optiSel-0.3/optiSel/R/kinwac.R | 12 optiSel-0.3/optiSel/R/noffspring.R |only optiSel-0.3/optiSel/R/opticomp.R |only optiSel-0.3/optiSel/R/opticont.R | 146 ++++--- optiSel-0.3/optiSel/R/opticont4mb.R |only optiSel-0.3/optiSel/R/pedBreedComp.R |only optiSel-0.3/optiSel/R/pedIBD.R |only optiSel-0.3/optiSel/R/pedIBDatN.R |only optiSel-0.3/optiSel/R/pedIBDorM.R |only optiSel-0.3/optiSel/R/pedInbreeding.R |only optiSel-0.3/optiSel/R/pedplot.R | 3 optiSel-0.3/optiSel/R/plot.HaploFreq.R |only optiSel-0.3/optiSel/R/prePed.R | 36 + optiSel-0.3/optiSel/R/read.indiv.R |only optiSel-0.3/optiSel/R/segBreedComp.R |only optiSel-0.3/optiSel/R/segIBD.R |only optiSel-0.3/optiSel/R/segIBDandN.R |only optiSel-0.3/optiSel/R/segIBDatN.R |only optiSel-0.3/optiSel/R/segInbreeding.R |only optiSel-0.3/optiSel/R/segN.R |only optiSel-0.3/optiSel/R/sim2dis.R |only optiSel-0.3/optiSel/R/subPed.R | 57 +-- optiSel-0.3/optiSel/R/summary.Pedig.R |only optiSel-0.3/optiSel/R/summary.kinwac.R | 49 +- optiSel-0.3/optiSel/R/summary.opticont.R | 253 +++++++------ optiSel-0.3/optiSel/build |only optiSel-0.3/optiSel/data/Cattle.rda |only optiSel-0.3/optiSel/data/ExamplePed.rda |binary optiSel-0.3/optiSel/data/Kin.rda |binary optiSel-0.3/optiSel/data/PedigWithErrors.rda |binary optiSel-0.3/optiSel/data/Phen.rda |binary optiSel-0.3/optiSel/data/map.rda |only optiSel-0.3/optiSel/inst |only optiSel-0.3/optiSel/man/Cattle.Rd |only optiSel-0.3/optiSel/man/Chr1.phased.Rd |only optiSel-0.3/optiSel/man/Chr2.phased.Rd |only optiSel-0.3/optiSel/man/ExamplePed.Rd | 2 optiSel-0.3/optiSel/man/Kin.Rd |only optiSel-0.3/optiSel/man/Phen.Rd | 2 optiSel-0.3/optiSel/man/completeness.Rd | 63 ++- optiSel-0.3/optiSel/man/conttac.Rd | 19 - optiSel-0.3/optiSel/man/freqlist.Rd |only optiSel-0.3/optiSel/man/genecont.Rd | 4 optiSel-0.3/optiSel/man/haplofreq.Rd |only optiSel-0.3/optiSel/man/help.opticont.Rd | 6 optiSel-0.3/optiSel/man/help.opticont4mb.Rd |only optiSel-0.3/optiSel/man/kinlist.Rd |only optiSel-0.3/optiSel/man/kinwac.Rd | 16 optiSel-0.3/optiSel/man/map.Rd |only optiSel-0.3/optiSel/man/noffspring.Rd |only optiSel-0.3/optiSel/man/optiSel-package.Rd | 233 +++++++++--- optiSel-0.3/optiSel/man/opticomp.Rd |only optiSel-0.3/optiSel/man/opticont.Rd | 499 +++++++++++++-------------- optiSel-0.3/optiSel/man/opticont4mb.Rd |only optiSel-0.3/optiSel/man/pedBreedComp.Rd |only optiSel-0.3/optiSel/man/pedIBD.Rd |only optiSel-0.3/optiSel/man/pedIBDatN.Rd |only optiSel-0.3/optiSel/man/pedIBDorM.Rd |only optiSel-0.3/optiSel/man/pedInbreeding.Rd |only optiSel-0.3/optiSel/man/pedplot.Rd | 8 optiSel-0.3/optiSel/man/plot.HaploFreq.Rd |only optiSel-0.3/optiSel/man/prePed.Rd | 4 optiSel-0.3/optiSel/man/read.indiv.Rd |only optiSel-0.3/optiSel/man/segBreedComp.Rd |only optiSel-0.3/optiSel/man/segIBD.Rd |only optiSel-0.3/optiSel/man/segIBDandN.Rd |only optiSel-0.3/optiSel/man/segIBDatN.Rd |only optiSel-0.3/optiSel/man/segInbreeding.Rd |only optiSel-0.3/optiSel/man/segN.Rd |only optiSel-0.3/optiSel/man/sim2dis.Rd |only optiSel-0.3/optiSel/man/subPed.Rd | 4 optiSel-0.3/optiSel/man/summary.Pedig.Rd |only optiSel-0.3/optiSel/man/summary.kinwac.Rd | 48 +- optiSel-0.3/optiSel/man/summary.opticont.Rd | 29 + optiSel-0.3/optiSel/src |only 93 files changed, 1071 insertions(+), 717 deletions(-)
Title: Visualising Molecular Dynamics Analyses
Description: Provides automatization for plot generation succeeding common molecular dynamics analyses.
This includes straightforward plots, such as RMSD (Root-Mean-Square-Deviation) and
RMSF (Root-Mean-Square-Fluctuation) but also more sophisticated ones such as
dihedral angle maps, hydrogen bonds, cluster bar plots and
DSSP (Definition of Secondary Structure of Proteins) analysis. Currently able to load
GROMOS, GROMACS and AMBER formats, respectively.
Author: Christian Margreitter [aut, cre]
Maintainer: Christian Margreitter <christian.margreitter@gmail.com>
Diff between MDplot versions 0.3.1 dated 2016-04-28 and 1.0.0 dated 2017-02-23
MDplot-0.3.1/MDplot/inst/extdata/3-Helix.out |only MDplot-0.3.1/MDplot/inst/extdata/4-Helix.out |only MDplot-0.3.1/MDplot/inst/extdata/5-Helix.out |only MDplot-0.3.1/MDplot/inst/extdata/Bend.out |only MDplot-0.3.1/MDplot/inst/extdata/Beta-Bridge.out |only MDplot-0.3.1/MDplot/inst/extdata/Beta-Strand.out |only MDplot-0.3.1/MDplot/inst/extdata/Turn.out |only MDplot-0.3.1/MDplot/inst/extdata/dssp_summary_example.txt.gz |only MDplot-0.3.1/MDplot/inst/extdata/rmsd1_example.txt.gz |only MDplot-0.3.1/MDplot/inst/extdata/rmsd2_example.txt.gz |only MDplot-0.3.1/MDplot/inst/extdata/rmsf1_example.txt.gz |only MDplot-0.3.1/MDplot/inst/extdata/rmsf2_example.txt.gz |only MDplot-0.3.1/MDplot/inst/extdata/timeseries_example.txt.gz |only MDplot-0.3.1/MDplot/man/dssp_summary.Rd |only MDplot-0.3.1/MDplot/man/load_dssp_summary.Rd |only MDplot-1.0.0/MDplot/DESCRIPTION | 11 MDplot-1.0.0/MDplot/MD5 | 138 ++- MDplot-1.0.0/MDplot/NAMESPACE | 29 MDplot-1.0.0/MDplot/NEWS | 34 MDplot-1.0.0/MDplot/R/clusters.R | 215 ++++- MDplot-1.0.0/MDplot/R/dssp.R | 302 ++++++-- MDplot-1.0.0/MDplot/R/hbond.R | 371 ++++++++-- MDplot-1.0.0/MDplot/R/helperfunctions.R | 138 +++ MDplot-1.0.0/MDplot/R/noe.R |only MDplot-1.0.0/MDplot/R/ramachandran.R | 77 +- MDplot-1.0.0/MDplot/R/rmsd.R | 180 +++- MDplot-1.0.0/MDplot/R/rmsf.R | 60 + MDplot-1.0.0/MDplot/R/timeseries.R | 24 MDplot-1.0.0/MDplot/R/xrmsd.R | 77 +- MDplot-1.0.0/MDplot/inst/bash/MDplot_bash.R | 221 +++-- MDplot-1.0.0/MDplot/inst/bash/MDplot_install.R | 12 MDplot-1.0.0/MDplot/inst/bash/install.sh | 2 MDplot-1.0.0/MDplot/inst/bash/test.sh | 46 - MDplot-1.0.0/MDplot/inst/extdata/clusters_example_1_AMBER.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/clusters_example_2_AMBER.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/clusters_example_GROMACS.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/clusters_ts_example_AMBER.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/dssp_example.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/dssp_example_GROMACS.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/dssp_ts_example |only MDplot-1.0.0/MDplot/inst/extdata/dssp_ts_example_AMBER.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/hbond_example_AMBER.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/hbond_example_GROMACS.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/hbond_ts_example_AMBER.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/hbond_ts_example_GROMACS.xpm.gz |only MDplot-1.0.0/MDplot/inst/extdata/noe_example_1.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/noe_example_2.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/ramachandran_example.txt.gz |binary MDplot-1.0.0/MDplot/inst/extdata/ramachandran_example_AMBER.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/ramachandran_example_GROMACS.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/rmsd_example_1.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/rmsd_example_2.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/rmsd_example_AMBER.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/rmsf_example_1.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/rmsf_example_2.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/rmsf_example_AMBER.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/rmsf_example_GROMACS.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/timeseries_example_1.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/timeseries_example_2.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/xrmsd_example_AMBER.txt.gz |only MDplot-1.0.0/MDplot/inst/extdata/xrmsd_example_GROMACS.xpm.gz |only MDplot-1.0.0/MDplot/man/MDplot-internal.Rd | 10 MDplot-1.0.0/MDplot/man/MDplot_argument-class.Rd | 3 MDplot-1.0.0/MDplot/man/TIcurve.Rd | 21 MDplot-1.0.0/MDplot/man/clusters.Rd | 14 MDplot-1.0.0/MDplot/man/clusters_ts.Rd | 10 MDplot-1.0.0/MDplot/man/dssp.Rd |only MDplot-1.0.0/MDplot/man/dssp_ts.Rd | 16 MDplot-1.0.0/MDplot/man/hbond.Rd | 22 MDplot-1.0.0/MDplot/man/hbond_ts.Rd | 34 MDplot-1.0.0/MDplot/man/load_TIcurve.Rd | 16 MDplot-1.0.0/MDplot/man/load_clusters.Rd | 28 MDplot-1.0.0/MDplot/man/load_clusters_ts.Rd | 28 MDplot-1.0.0/MDplot/man/load_dssp.Rd |only MDplot-1.0.0/MDplot/man/load_dssp_ts.Rd | 32 MDplot-1.0.0/MDplot/man/load_hbond.Rd | 42 - MDplot-1.0.0/MDplot/man/load_hbond_ts.Rd | 26 MDplot-1.0.0/MDplot/man/load_noe.Rd |only MDplot-1.0.0/MDplot/man/load_ramchandran.Rd | 21 MDplot-1.0.0/MDplot/man/load_rmsd.Rd | 26 MDplot-1.0.0/MDplot/man/load_rmsf.Rd | 23 MDplot-1.0.0/MDplot/man/load_timeseries.Rd | 18 MDplot-1.0.0/MDplot/man/load_xrmsd.Rd | 28 MDplot-1.0.0/MDplot/man/noe.Rd |only MDplot-1.0.0/MDplot/man/ramachandran.Rd | 26 MDplot-1.0.0/MDplot/man/rmsd.Rd | 31 MDplot-1.0.0/MDplot/man/rmsd_average.Rd |only MDplot-1.0.0/MDplot/man/rmsf.Rd | 30 MDplot-1.0.0/MDplot/man/timeseries.Rd | 23 MDplot-1.0.0/MDplot/man/translate_aminoacids.Rd | 12 MDplot-1.0.0/MDplot/man/xrmsd.Rd | 19 91 files changed, 1849 insertions(+), 647 deletions(-)
Title: Data from the M-Competitions
Description:
The 1001 time series from the M-competition (Makridakis et al. 1982) <DOI:10.1002/for.3980010202> and the 3003 time series from the IJF-M3 competition (Makridakis and Hibon, 2000) <DOI:10.1016/S0169-2070(00)00057-1>.
Author: Rob J Hyndman with assistance from Muhammad Akram, Christoph Bergmeir and Mitchell O'Hara-Wild
Maintainer: Rob J Hyndman <Rob.Hyndman@monash.edu>
Diff between Mcomp versions 2.05 dated 2013-06-19 and 2.6 dated 2017-02-23
ChangeLog | 54 +++++----- DESCRIPTION | 20 +-- MD5 | 14 +- NAMESPACE | 20 ++- R/Mdata.R | 283 +++++++++++++++++++++++++----------------------------- R/plots.R |only README.md |only data/M3.rda |binary man/plot.Mdata.Rd | 15 +- 9 files changed, 204 insertions(+), 202 deletions(-)
Title: Tools for Reading and Handling Spatial Objects
Description: Set of tools for manipulating and reading geographic data, in particular 'ESRI Shapefiles'; C code used from 'shapelib'. It includes binary access to 'GSHHG' shoreline files. The package also provides interface wrappers for exchanging spatial objects with packages such as 'PBSmapping', 'spatstat', 'maps', 'RArcInfo', 'Stata tmap', 'WinBUGS', 'Mondrian', and others.
Author: Roger Bivand [cre, aut],
Nicholas Lewin-Koh [aut],
Edzer Pebesma [ctb],
Eric Archer [ctb],
Adrian Baddeley [ctb],
Nick Bearman [ctb],
Hans-Jörg Bibiko [ctb],
Steven Brey [ctb],
Jonathan Callahan [ctb],
German Carrillo [ctb],
Stéphane Dray [ctb],
David Forrest [ctb],
Michael Friendly [ctb],
Patrick Giraudoux [ctb],
Duncan Golicher [ctb],
Virgilio Gómez Rubio [ctb],
Patrick Hausmann [ctb],
Karl Ove Hufthammer [ctb],
Thomas Jagger [ctb],
Kent Johnson [ctb],
Sebastian Luque [ctb],
Don MacQueen [ctb],
Andrew Niccolai [ctb],
Edzer Pebesma [ctb],
Oscar Perpiñán Lamigueiro [ctb],
Tom Short [ctb],
Greg Snow [ctb],
Ben Stabler [ctb],
Murray Stokely [ctb],
Rolf Turner [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between maptools versions 0.8-41 dated 2017-01-09 and 0.9-1 dated 2017-02-23
ChangeLog | 857 ++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 8 MD5 | 33 - R/Spatial-methods.R | 2 R/SpatialLines-methods.R | 2 R/SpatialPoints-methods.R | 2 R/SpatialPolys-methods.R | 2 inst/ChangeLog | 857 ++++++++++++++++++++++++++++++++++++++++++ inst/doc/combine_maptools.pdf |binary man/gcDestination.Rd | 2 man/readShapeLines.Rd | 3 man/readShapePoints.Rd | 3 man/readShapePoly.Rd | 3 man/readShapeSpatial.Rd | 3 src/Rcentroid.c | 2 src/Rgshhs.c | 3 src/init.c |only src/maptools.h | 17 18 files changed, 1764 insertions(+), 35 deletions(-)
Title: Manipulation of Linear Systems of (in)Equalities
Description: Variable elimination (Gaussian elimination, Fourier-Motzkin elimination),
Moore-Penrose pseudoinverse, reduction to reduced row echelon form, value substitution,
projecting a vector on the convex polytope described by a system of (in)equations,
simplify systems by removing spurious columns and rows and collapse implied equalities,
test if a matrix is totally unimodular, compute variable ranges implied by linear
(in)equalities.
Author: Mark van der Loo [aut, cre],
Edwin de Jonge [aut]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between lintools versions 0.1.1.1 dated 2016-03-04 and 0.1.1.3 dated 2017-02-23
DESCRIPTION | 10 ++-- MD5 | 23 +++++---- NAMESPACE | 2 NEWS | 6 ++ R/compact.R | 9 ++- R/lintools-pkg.R | 3 - R/ranges.R | 2 build/vignette.rds |binary inst/doc/project.Rmd | 2 inst/doc/project.html | 101 +++++++++++++++++++++++++------------------ src/R_register_native.c |only tests/testthat/test_ranges.R | 20 ++++++++ vignettes/project.Rmd | 2 13 files changed, 111 insertions(+), 69 deletions(-)
Title: A Simple Web Framework for R
Description: A set of functions to ease the building of web APIs.
Author: Bart Smeets [aut, cre]
Maintainer: Bart Smeets <bartsmeets86@gmail.com>
Diff between jug versions 0.1.4 dated 2016-09-15 and 0.1.6 dated 2017-02-23
DESCRIPTION | 8 +-- MD5 | 80 ++++++++++++++++++++------------------- NAMESPACE | 2 R/decorators.R | 15 ++++++- R/helpers.R | 5 ++ R/jug.R | 2 R/middleware_auth.R |only R/response.R | 4 - build/vignette.rds |binary inst/doc/jug.R | 28 +++++++++++++ inst/doc/jug.Rmd | 47 ++++++++++++++++++++-- inst/doc/jug.html | 41 ++++++++++++++++--- man/Error.Rd | 1 man/Jug.Rd | 1 man/Middleware.Rd | 1 man/MiddlewareHandler.Rd | 1 man/RawTestRequest.Rd | 1 man/Request.Rd | 1 man/Response.Rd | 1 man/add_middleware.Rd | 1 man/auth_basic.Rd |only man/collector.Rd | 1 man/cors.Rd | 1 man/decorate.Rd | 5 +- man/delete.Rd | 1 man/get.Rd | 2 man/include.Rd | 1 man/match_path.Rd | 1 man/new_error.Rd | 1 man/parse_params.Rd | 1 man/post.Rd | 1 man/process_test_request.Rd | 1 man/put.Rd | 1 man/reexports.Rd |only man/serve_it.Rd | 1 man/serve_static_files.Rd | 1 man/simple_error_handler.Rd | 1 man/simple_error_handler_json.Rd | 1 man/stop_daemon.Rd | 1 man/use.Rd | 1 man/ws.Rd | 1 tests/testthat/test_auth.R |only vignettes/jug.Rmd | 47 ++++++++++++++++++++-- 43 files changed, 222 insertions(+), 89 deletions(-)
Title: Estimation of the Generalized Symmetry Point, an Optimal
Cutpoint in Continuous Diagnostic Tests
Description: Estimation of the cutpoint defined by the Generalized Symmetry point in a binary classification setting based on a continuous diagnostic test or marker. Two methods have been implemented to construct confidence intervals for this optimal cutpoint, one based on the Generalized Pivotal Quantity and the other based on Empirical Likelihood. Numerical and graphical outputs for these two methods are easily obtained.
Author: Mónica López-Ratón [aut, cre],
Carmen Cadarso-Suárez [aut],
Elisa M. Molanes-López [aut],
Emilio Letón [aut]
Maintainer: Mónica López-Ratón <monica.lopez.raton@gmail.com>
Diff between GsymPoint versions 1.1 dated 2017-02-08 and 1.1.1 dated 2017-02-23
DESCRIPTION | 20 ++++++++--- MD5 | 16 ++++----- NAMESPACE | 5 -- inst/CITATION | 37 ++++++++------------- inst/NEWS | 80 ++++++++++++++++++++-------------------------- man/GsymPoint-package.Rd | 4 +- man/control.gsym.point.Rd | 2 - tests/testthat.R | 2 - tests/testthat/test-auc.R | 11 ------ 9 files changed, 78 insertions(+), 99 deletions(-)
Title: Copula Based Bivariate Beta-Binomial Model for Diagnostic Test
Accuracy Studies
Description: Modelling of sensitivity and specificity on their natural scale
using copula based bivariate beta-binomial distribution to yield marginal
mean sensitivity and specificity. The intrinsic negative correlation between
sensitivity and specificity is modelled using a copula function. A forest plot
can be obtained for categorical covariates or for the model with intercept only.
Author: Victoria N Nyaga [aut, cre]
Maintainer: Victoria N Nyaga <victoria.nyaga@outlook.com>
Diff between CopulaDTA versions 0.0.4 dated 2016-08-08 and 0.0.5 dated 2017-02-23
DESCRIPTION | 24 +- MD5 | 54 ++--- R/plot.R | 24 +- R/traceplot.R | 7 build/vignette.rds |binary inst/CITATION | 8 inst/doc/CopulaDTA_Vignette.R | 209 ++++++++++--------- inst/doc/CopulaDTA_Vignette.Rmd | 232 +++++++++++---------- inst/doc/CopulaDTA_Vignette.html | 419 +++++++++++++++++++++------------------ man/ascus.Rd | 53 ++-- man/cdtafit-class.Rd | 8 man/cdtamodel-class.Rd | 8 man/cdtamodel.Rd | 7 man/fit.Rd | 1 man/fit.cdtamodel.Rd | 7 man/forestplot.cdtafit.Rd | 7 man/ft.Rd | 37 +-- man/plot.Rd | 1 man/prep.data.Rd | 1 man/print.cdtafit.Rd | 7 man/show.Rd | 3 man/summary.cdtafit.Rd | 7 man/telomerase.Rd | 51 ++-- man/traceplot.Rd | 1 man/traceplot.cdtafit.Rd | 1 man/waic.Rd | 1 vignettes/CopulaDTA_Vignette.Rmd | 17 + vignettes/References.bib | 22 +- 28 files changed, 653 insertions(+), 564 deletions(-)
Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in
tabular data such as primary and secondary cell suppression are covered in
this package.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl <bernhard.meindl@statistik.gv.at>
Diff between sdcTable versions 0.21.6 dated 2016-08-22 and 0.22.1 dated 2017-02-23
DESCRIPTION | 10 - MD5 | 139 ++++++++++++------------ NAMESPACE | 5 R/RcppExports.R | 2 R/classes.r | 4 R/classes_tauBatch.r |only R/export_functions.r | 212 ++++++++++++++++++++++++++++++++++++- R/helper_functions.r | 86 +++++++++++++-- R/methods_class_sdcProblem.r | 27 +++- R/tauBatch_helpers.R |only R/zzz.r | 1 build/vignette.rds |binary inst/doc/sdcTable.pdf |binary man/attack.Rd | 1 man/calc.cutList-method.Rd | 1 man/calc.dimVar-method.Rd | 1 man/calc.linProb-method.Rd | 1 man/calc.multiple-method.Rd | 4 man/calc.problemInstance-method.Rd | 4 man/calc.sdcProblem-method.Rd | 4 man/calc.simpleTriplet-method.Rd | 4 man/cellInfo.Rd | 1 man/changeCellStatus.Rd | 1 man/createArgusInput.Rd |only man/cutList-class.Rd | 1 man/dataObj-class.Rd | 1 man/dimInfo-class.Rd | 1 man/dimVar-class.Rd | 1 man/get.cutList-method.Rd | 1 man/get.dataObj-method.Rd | 1 man/get.dimInfo-method.Rd | 1 man/get.dimVar-method.Rd | 1 man/get.linProb-method.Rd | 1 man/get.problemInstance-method.Rd | 4 man/get.safeObj-method.Rd | 1 man/get.sdcProblem-method.Rd | 4 man/get.simpleTriplet-method.Rd | 4 man/getInfo.Rd | 1 man/init.cutList-method.Rd | 1 man/init.dataObj-method.Rd | 1 man/init.dimVar-method.Rd | 1 man/init.simpleTriplet-method.Rd | 4 man/linProb-class.Rd | 1 man/makeProblem.Rd | 7 - man/microData1.Rd | 1 man/microData2.Rd | 1 man/primarySuppression.Rd | 1 man/print-method.Rd | 1 man/print.sdcProblem-method.Rd | 1 man/problem.Rd | 1 man/problemInstance-class.Rd | 1 man/problemWithSupps.Rd | 1 man/protectLinkedTables.Rd | 7 - man/protectTable.Rd | 10 + man/protectedData.Rd | 1 man/runArgusBatchFile.Rd |only man/safeObj-class.Rd | 1 man/sdcProblem-class.Rd | 1 man/set.cutList-method.Rd | 1 man/set.dataObj-method.Rd | 1 man/set.dimInfo-method.Rd | 1 man/set.linProb-method.Rd | 1 man/set.problemInstance-method.Rd | 4 man/set.sdcProblem-method.Rd | 4 man/setInfo.Rd | 1 man/show.safeObj-method.Rd | 1 man/show.sdcProblem-method.Rd | 1 man/simpleTriplet-class.Rd | 1 man/summary.safeObj-method.Rd | 1 man/summary.sdcProblem-method.Rd | 1 src/RcppExports.cpp | 34 ++--- src/init.c |only src/suppMultDimTable.cpp | 38 +++--- 73 files changed, 462 insertions(+), 202 deletions(-)
Title: An Interface to the NOAA Operational Model Archive and
Distribution System
Description: An interface to the National Oceanic and Atmospheric Administration's Operational Model Archive and Distribution System (NOMADS, see <http://nomads.ncep.noaa.gov/> for more information) that allows R users to quickly and efficiently download global and regional weather model data for processing. rNOMADS currently supports a variety of models ranging from global weather data to an altitude of 40 km, to high resolution regional weather models, to wave and sea ice models. It can also retrieve archived NOMADS models. rNOMADS can retrieve binary data in grib format as well as import ascii data directly into R by interfacing with the GrADS-DODS system.
Author: Daniel C. Bowman [aut, cre]
Maintainer: Daniel C. Bowman <danny.c.bowman@gmail.com>
Diff between rNOMADS versions 2.3.2 dated 2016-12-31 and 2.3.3 dated 2017-02-23
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS | 4 ++++ R/GetDODS.R | 2 +- R/Models.R | 12 ++++++------ 5 files changed, 20 insertions(+), 16 deletions(-)
Title: A Flexible and Robust Sys.sleep() Replacement
Description: Provides a near drop-in replacement for base::Sys.sleep() that allows more types of input
to produce delays in the execution of code and can silence/prevent typical sources of error.
Author: Russell S. Pierce [aut, cre],
Timothy Gann [aut]
Maintainer: Russell S. Pierce <russell.s.pierce@gmail.com>
Diff between naptime versions 1.2.2 dated 2017-02-09 and 1.3.0 dated 2017-02-23
naptime-1.2.2/naptime/ChangeLog |only naptime-1.2.2/naptime/inst/doc/naptime.R |only naptime-1.2.2/naptime/inst/doc/naptime.Rmd |only naptime-1.2.2/naptime/inst/doc/naptime.html |only naptime-1.2.2/naptime/vignettes/naptime.Rmd |only naptime-1.3.0/naptime/DESCRIPTION | 14 ++--- naptime-1.3.0/naptime/MD5 | 27 +++++------ naptime-1.3.0/naptime/NAMESPACE | 2 naptime-1.3.0/naptime/NEWS.md | 13 +++++ naptime-1.3.0/naptime/R/naptime.R | 46 ++++++++++++------- naptime-1.3.0/naptime/README.md | 15 ------ naptime-1.3.0/naptime/build/vignette.rds |binary naptime-1.3.0/naptime/inst/doc/WhyAndHowToNap.R |only naptime-1.3.0/naptime/inst/doc/WhyAndHowToNap.Rmd |only naptime-1.3.0/naptime/inst/doc/WhyAndHowToNap.html |only naptime-1.3.0/naptime/man/naptime.Rd | 11 ++-- naptime-1.3.0/naptime/tests/testthat.R | 1 naptime-1.3.0/naptime/tests/testthat/test-naptime.R | 47 +++++++++++++++----- naptime-1.3.0/naptime/vignettes/WhyAndHowToNap.Rmd |only 19 files changed, 107 insertions(+), 69 deletions(-)
Title: Forecasting Functions for Time Series and Linear Models
Description: Methods and tools for displaying and analysing
univariate time series forecasts including exponential smoothing
via state space models and automatic ARIMA modelling.
Author: Rob Hyndman [aut, cre, cph],
Mitchell O'Hara-Wild [aut],
Christoph Bergmeir [aut],
Slava Razbash [aut],
Earo Wang [aut]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between forecast versions 7.3 dated 2016-10-12 and 8.0 dated 2017-02-23
forecast-7.3/forecast/man/arima.errors.Rd |only forecast-7.3/forecast/man/autoplot.decomposed.ts.Rd |only forecast-7.3/forecast/man/autoplot.stl.Rd |only forecast-7.3/forecast/man/fitted.bats.Rd |only forecast-7.3/forecast/man/fitted.ets.Rd |only forecast-7.3/forecast/man/fitted.nnetar.Rd |only forecast-7.3/forecast/man/fitted.tbats.Rd |only forecast-7.3/forecast/man/fortify.forecast.Rd |only forecast-7.3/forecast/man/logLikets.Rd |only forecast-7.3/forecast/tests/testthat/Rplots.pdf |only forecast-8.0/forecast/ChangeLog | 25 forecast-8.0/forecast/DESCRIPTION | 31 forecast-8.0/forecast/MD5 | 205 +-- forecast-8.0/forecast/NAMESPACE | 74 - forecast-8.0/forecast/R/HoltWintersNew.R | 34 forecast-8.0/forecast/R/acf.R | 39 forecast-8.0/forecast/R/arfima.R | 165 +- forecast-8.0/forecast/R/arima.R | 112 - forecast-8.0/forecast/R/attach.R | 15 forecast-8.0/forecast/R/baggedETS.R |only forecast-8.0/forecast/R/bats.R | 28 forecast-8.0/forecast/R/bootstrap.R | 53 forecast-8.0/forecast/R/calendar.R | 11 forecast-8.0/forecast/R/checkresiduals.R |only forecast-8.0/forecast/R/components.R |only forecast-8.0/forecast/R/dshw.r | 9 forecast-8.0/forecast/R/errors.R | 26 forecast-8.0/forecast/R/ets.R | 35 forecast-8.0/forecast/R/etsforecast.R | 36 forecast-8.0/forecast/R/fitBATS.R | 19 forecast-8.0/forecast/R/fitTBATS.R | 15 forecast-8.0/forecast/R/forecast.R | 111 + forecast-8.0/forecast/R/forecast.varest.R | 45 forecast-8.0/forecast/R/forecast2.R | 101 - forecast-8.0/forecast/R/forecastBATS.R | 58 forecast-8.0/forecast/R/forecastTBATS.R | 51 forecast-8.0/forecast/R/getResponse.R | 7 forecast-8.0/forecast/R/ggplot.R | 1180 +++++++++++++----- forecast-8.0/forecast/R/graph.R | 6 forecast-8.0/forecast/R/lm.R | 66 - forecast-8.0/forecast/R/mforecast.R | 126 - forecast-8.0/forecast/R/naive.R | 38 forecast-8.0/forecast/R/newarima2.R | 479 +++---- forecast-8.0/forecast/R/nnetar.R | 26 forecast-8.0/forecast/R/residuals.R |only forecast-8.0/forecast/R/seasadj.R | 22 forecast-8.0/forecast/R/season.R | 99 - forecast-8.0/forecast/R/simulate.R | 39 forecast-8.0/forecast/R/spline.R | 11 forecast-8.0/forecast/R/subset.R | 47 forecast-8.0/forecast/R/tbats.R | 45 forecast-8.0/forecast/R/theta.R | 6 forecast-8.0/forecast/R/tscv.R |only forecast-8.0/forecast/README.md | 60 forecast-8.0/forecast/build |only forecast-8.0/forecast/inst/doc |only forecast-8.0/forecast/man/Acf.Rd | 11 forecast-8.0/forecast/man/BoxCox.Rd | 6 forecast-8.0/forecast/man/CVar.Rd |only forecast-8.0/forecast/man/arfima.Rd | 4 forecast-8.0/forecast/man/arima.Rd | 5 forecast-8.0/forecast/man/autolayer.Rd |only forecast-8.0/forecast/man/autoplot.acf.Rd | 7 forecast-8.0/forecast/man/autoplot.seas.Rd |only forecast-8.0/forecast/man/autoplot.ts.Rd | 14 forecast-8.0/forecast/man/baggedETS.Rd |only forecast-8.0/forecast/man/bats.Rd | 3 forecast-8.0/forecast/man/bld.mbb.bootstrap.Rd |only forecast-8.0/forecast/man/checkresiduals.Rd |only forecast-8.0/forecast/man/components.Rd |only forecast-8.0/forecast/man/dshw.Rd | 4 forecast-8.0/forecast/man/fitted.Arima.Rd | 29 forecast-8.0/forecast/man/forecast.Arima.Rd | 6 forecast-8.0/forecast/man/forecast.HoltWinters.Rd | 4 forecast-8.0/forecast/man/forecast.Rd | 26 forecast-8.0/forecast/man/forecast.StructTS.Rd | 2 forecast-8.0/forecast/man/forecast.baggedETS.Rd |only forecast-8.0/forecast/man/forecast.bats.Rd | 4 forecast-8.0/forecast/man/forecast.ets.Rd | 4 forecast-8.0/forecast/man/forecast.lm.Rd | 2 forecast-8.0/forecast/man/forecast.mlm.Rd | 2 forecast-8.0/forecast/man/forecast.stl.Rd | 10 forecast-8.0/forecast/man/forecastplot.Rd | 18 forecast-8.0/forecast/man/fourier.Rd |only forecast-8.0/forecast/man/geom_forecast.Rd | 19 forecast-8.0/forecast/man/gghistogram.Rd |only forecast-8.0/forecast/man/gglagplot.Rd | 17 forecast-8.0/forecast/man/ggmonthplot.Rd | 17 forecast-8.0/forecast/man/is.model.Rd | 4 forecast-8.0/forecast/man/plot.Arima.Rd | 2 forecast-8.0/forecast/man/plot.ets.Rd | 3 forecast-8.0/forecast/man/plot.mforecast.Rd | 12 forecast-8.0/forecast/man/reexports.Rd |only forecast-8.0/forecast/man/residuals.Rd |only forecast-8.0/forecast/man/seasonal.dummy.Rd | 29 forecast-8.0/forecast/man/seasonplot.Rd | 9 forecast-8.0/forecast/man/ses.Rd | 17 forecast-8.0/forecast/man/simulate.Rd | 19 forecast-8.0/forecast/man/subsetts.Rd | 12 forecast-8.0/forecast/man/tbats.Rd | 3 forecast-8.0/forecast/man/ts.display.Rd | 13 forecast-8.0/forecast/man/tsclean.Rd | 3 forecast-8.0/forecast/man/tscv.Rd |only forecast-8.0/forecast/src/registerDynamicSymbol.c |only forecast-8.0/forecast/tests/testthat/test-accuracy.R | 8 forecast-8.0/forecast/tests/testthat/test-arima.R | 13 forecast-8.0/forecast/tests/testthat/test-armaroots.R | 7 forecast-8.0/forecast/tests/testthat/test-bats.R | 18 forecast-8.0/forecast/tests/testthat/test-biasadj.R |only forecast-8.0/forecast/tests/testthat/test-dshw.R | 20 forecast-8.0/forecast/tests/testthat/test-forecast.R | 2 forecast-8.0/forecast/tests/testthat/test-ggplot.R |only forecast-8.0/forecast/tests/testthat/test-graph.R | 2 forecast-8.0/forecast/tests/testthat/test-hfitted.R | 47 forecast-8.0/forecast/tests/testthat/test-mforecast.R | 6 forecast-8.0/forecast/tests/testthat/test-nnetar.R | 11 forecast-8.0/forecast/tests/testthat/test-refit.R |only forecast-8.0/forecast/tests/testthat/test-tbats.R | 4 forecast-8.0/forecast/vignettes |only 119 files changed, 2513 insertions(+), 1520 deletions(-)
Title: R Interface to the Europe PubMed Central RESTful Web Service
Description: An R Client for the Europe PubMed Central RESTful Web Service
(see <https://europepmc.org/RestfulWebService> for more information). It
gives access to both metadata on life science literature and open access
full texts. Europe PMC indexes all PubMed content and other literature
sources including Agricola, a bibliographic database of citations to the
agricultural literature, or Biological Patents. In addition to bibliographic
metadata, the client allows users to fetch citations and reference lists.
Links between life-science literature and other EBI databases, including
ENA, PDB or ChEMBL are also accessible. No registration or API key is
required. See the vignettes for usage examples.
Author: Najko Jahn [aut, cre, cph]
Maintainer: Najko Jahn <najko.jahn@gmail.com>
Diff between europepmc versions 0.1.2 dated 2017-01-08 and 0.1.3 dated 2017-02-23
DESCRIPTION | 10 +- MD5 | 26 ++--- NAMESPACE | 1 NEWS.md | 10 +- R/epmc_db.r | 6 + R/europepmc.r | 2 R/utils.r | 9 + README.md | 178 ++++++++++++++++++----------------- inst/doc/introducing-europepmc.Rmd | 2 inst/doc/introducing-europepmc.html | 180 ++++++++++++++++++------------------ man/epmc_db.Rd | 3 tests/testthat/test_epmc_db.r | 6 + tests/testthat/test_epmc_db_count.r | 3 vignettes/introducing-europepmc.Rmd | 2 14 files changed, 235 insertions(+), 203 deletions(-)
Title: Estimate a Single or Multiple Graphical Models and Construct
Networks
Description: Provides an equivalent measure of partial correlation coefficients for high-dimensional Gaussian Graphical Models to learn and visualize the underlying relationships between variables from single or multiple datasets. You can refer to Liang, F., Song, Q. and Qiu, P. (2015) <doi:10.1080/01621459.2015.1012391> for more detail. Based on this method, the package also provides the method for constructing networks for Next Generation Sequencing Data. Besides, it includes the method for jointly estimating Gaussian Graphical Models of multiple datasets.
Author: Bochao Jia, Faming Liang, Runmin Shi, Suwa Xu
Maintainer: Bochao Jia <jbc409@ufl.edu>
Diff between equSA versions 1.0.0 dated 2017-02-22 and 1.0.1 dated 2017-02-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/equSA-package.Rd | 6 +++--- src/equSA.c | 13 +++++-------- 4 files changed, 15 insertions(+), 18 deletions(-)
Title: Dive Analysis and Calibration
Description: Utilities to represent, visualize, filter, analyse, and summarize
time-depth recorder (TDR) data. Miscellaneous functions for
handling location data are also provided.
Author: Sebastian P. Luque <spluque@gmail.com>
Maintainer: Sebastian P. Luque <spluque@gmail.com>
Diff between diveMove versions 1.4.1 dated 2016-02-06 and 1.4.2 dated 2017-02-23
DESCRIPTION | 11 - MD5 | 72 +++++------ NAMESPACE | 4 NEWS | 17 ++ R/AllClass.R | 26 ++-- R/AllMethod.R | 55 ++++++-- R/bouts.R | 2 R/calibrate.R | 17 +- R/detDive.R | 82 ++++++++++--- R/distSpeed.R | 5 R/zoc.R | 5 README.md | 2 build/vignette.rds |binary inst/CITATION | 2 inst/doc/diveMove.R | 257 +++++++++++++----------------------------- inst/doc/diveMove.Rnw | 128 +++++++++++--------- inst/doc/diveMove.pdf |binary man/TDRcalibrate-accessors.Rd | 8 - man/bout-misc.Rd | 3 man/bouts2MLE.Rd | 3 man/bouts2NLS.Rd | 3 man/bouts3NLS.Rd | 3 man/calibrateDepth.Rd | 115 +++++++++++++----- man/calibrateSpeed.Rd | 3 man/detDive-internal.Rd | 3 man/diveModel-class.Rd | 43 ++++++- man/diveMove-internal.Rd | 2 man/diveMove-package.Rd | 5 man/diveStats.Rd | 3 man/extractDive-methods.Rd | 3 man/labDive-internal.Rd | 12 + man/plotDiveModel-methods.Rd | 5 man/plotTDR-methods.Rd | 7 - man/plotZOC-methods.Rd | 3 man/timeBudget-methods.Rd | 3 tests/calibrations.R | 5 vignettes/diveMove.Rnw | 128 +++++++++++--------- 37 files changed, 598 insertions(+), 447 deletions(-)
Title: Computations over Distributed Data without Aggregation
Description: Implementing algorithms and fitting models when sites (possibly remote) share
computation summaries rather than actual data over HTTP with a master R process (using
'opencpu', for example). A stratified Cox model and a singular value decomposition are
provided. The former makes direct use of code from the R 'survival' package. (That is,
the underlying Cox model code is derived from that in the R 'survival' package.)
Sites may provide data via several means: CSV files, Redcap API, etc. An extensible
design allows for new methods to be added in the future. Web applications are provided
(via 'shiny') for the implemented methods to help in designing and deploying the
computations.
Author: Balasubramanian Narasimhan [aut, cre],
Marina Bendersky [aut],
Sam Gross [aut],
Terry M. Therneau [ctb],
Thomas Lumley [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>
Diff between distcomp versions 0.25.4 dated 2015-10-27 and 0.25.6 dated 2017-02-23
distcomp-0.25.4/distcomp/man/CoxMaster.Rd |only distcomp-0.25.4/distcomp/man/SVDMaster.Rd |only distcomp-0.25.6/distcomp/DESCRIPTION | 6 +++--- distcomp-0.25.6/distcomp/MD5 | 12 ++++++------ distcomp-0.25.6/distcomp/R/distcomp.R | 4 +++- distcomp-0.25.6/distcomp/README.md | 4 ++-- distcomp-0.25.6/distcomp/man/coxMaster.Rd |only distcomp-0.25.6/distcomp/man/svdMaster.Rd |only distcomp-0.25.6/distcomp/src/init.c | 2 +- 9 files changed, 15 insertions(+), 13 deletions(-)
Title: Crunch.io Data Tools
Description: The Crunch.io service <http://crunch.io/> provides a cloud-based
data store and analytic engine, as well as an intuitive web interface.
Using this package, analysts can interact with and manipulate Crunch
datasets from within R. Importantly, this allows technical researchers to
collaborate naturally with team members, managers, and clients who prefer a
point-and-click interface.
Author: Neal Richardson [aut, cre]
Maintainer: Neal Richardson <neal@crunch.io>
Diff between crunch versions 1.14.4 dated 2017-01-20 and 1.15.0 dated 2017-02-23
crunch-1.14.4/crunch/man/filter-methods.Rd |only crunch-1.15.0/crunch/DESCRIPTION | 12 crunch-1.15.0/crunch/MD5 | 363 +++++----- crunch-1.15.0/crunch/NAMESPACE | 6 crunch-1.15.0/crunch/R/AllClasses.R | 5 crunch-1.15.0/crunch/R/AllGenerics.R | 5 crunch-1.15.0/crunch/R/add-subvariable.R | 4 crunch-1.15.0/crunch/R/cube-query.R | 165 ---- crunch-1.15.0/crunch/R/cube-result.R | 61 + crunch-1.15.0/crunch/R/dataset-catalog.R | 19 crunch-1.15.0/crunch/R/export-dataset.R | 8 crunch-1.15.0/crunch/R/filters.R | 31 crunch-1.15.0/crunch/R/formula.R |only crunch-1.15.0/crunch/R/misc.R | 8 crunch-1.15.0/crunch/R/multitables.R |only crunch-1.15.0/crunch/R/new-dataset.R | 11 crunch-1.15.0/crunch/R/projects.R | 13 crunch-1.15.0/crunch/R/shoji-catalog.R | 27 crunch-1.15.0/crunch/R/subvariables.R | 3 crunch-1.15.0/crunch/R/tab-book.R |only crunch-1.15.0/crunch/R/teams.R | 15 crunch-1.15.0/crunch/R/variable-catalog.R | 18 crunch-1.15.0/crunch/R/variable-summary.R | 4 crunch-1.15.0/crunch/R/versions.R | 6 crunch-1.15.0/crunch/R/zcl.R | 17 crunch-1.15.0/crunch/man/Categories.Rd | 20 crunch-1.15.0/crunch/man/ContextManager.Rd | 1 crunch-1.15.0/crunch/man/CrunchDataset.Rd | 3 crunch-1.15.0/crunch/man/CrunchVariable.Rd | 20 crunch-1.15.0/crunch/man/DatasetOrder.Rd | 6 crunch-1.15.0/crunch/man/ShojiObject-class.Rd | 3 crunch-1.15.0/crunch/man/ShojiOrder-extract.Rd | 45 - crunch-1.15.0/crunch/man/ShojiOrder-length.Rd | 3 crunch-1.15.0/crunch/man/ShojiOrder-slots.Rd | 19 crunch-1.15.0/crunch/man/Subvariables.Rd | 6 crunch-1.15.0/crunch/man/VariableCatalog.Rd | 3 crunch-1.15.0/crunch/man/VariableDefinition.Rd | 3 crunch-1.15.0/crunch/man/VariableOrder.Rd | 6 crunch-1.15.0/crunch/man/addSubvariable.Rd | 1 crunch-1.15.0/crunch/man/addVariables.Rd | 1 crunch-1.15.0/crunch/man/appendDataset.Rd | 1 crunch-1.15.0/crunch/man/archive-and-publish.Rd | 31 crunch-1.15.0/crunch/man/as.environment-CrunchDataset-method.Rd | 1 crunch-1.15.0/crunch/man/batches.Rd | 1 crunch-1.15.0/crunch/man/c-categories.Rd | 1 crunch-1.15.0/crunch/man/catalog-extract.Rd | 108 +- crunch-1.15.0/crunch/man/catalog-length.Rd | 1 crunch-1.15.0/crunch/man/catalogToDataFrame.Rd | 1 crunch-1.15.0/crunch/man/category-extract.Rd | 3 crunch-1.15.0/crunch/man/checkForNewVersion.Rd | 1 crunch-1.15.0/crunch/man/cleanseBatches.Rd | 1 crunch-1.15.0/crunch/man/combine.Rd | 1 crunch-1.15.0/crunch/man/compareDatasets.Rd | 1 crunch-1.15.0/crunch/man/consent.Rd | 1 crunch-1.15.0/crunch/man/copyVariable.Rd | 3 crunch-1.15.0/crunch/man/createDataset.Rd | 1 crunch-1.15.0/crunch/man/createWithMetadataAndFile.Rd | 1 crunch-1.15.0/crunch/man/crtabs.Rd | 5 crunch-1.15.0/crunch/man/crunch-is.Rd | 19 crunch-1.15.0/crunch/man/crunch-summary.Rd | 1 crunch-1.15.0/crunch/man/crunch-uni.Rd | 21 crunch-1.15.0/crunch/man/crunch.Rd | 1 crunch-1.15.0/crunch/man/crunchAPI.Rd | 1 crunch-1.15.0/crunch/man/crunchBox.Rd | 1 crunch-1.15.0/crunch/man/cube-computing.Rd | 39 - crunch-1.15.0/crunch/man/cube-methods.Rd | 11 crunch-1.15.0/crunch/man/dataset-extract.Rd | 15 crunch-1.15.0/crunch/man/dataset-owner.Rd | 3 crunch-1.15.0/crunch/man/dataset-to-R.Rd | 5 crunch-1.15.0/crunch/man/dataset-update.Rd | 18 crunch-1.15.0/crunch/man/dataset-variables.Rd | 11 crunch-1.15.0/crunch/man/datasets.Rd | 1 crunch-1.15.0/crunch/man/dedupeOrder.Rd | 1 crunch-1.15.0/crunch/man/delete.Rd | 8 crunch-1.15.0/crunch/man/deleteDataset.Rd | 1 crunch-1.15.0/crunch/man/deleteSubvariables.Rd | 3 crunch-1.15.0/crunch/man/deleteVariables.Rd | 3 crunch-1.15.0/crunch/man/describe-catalog.Rd | 40 - crunch-1.15.0/crunch/man/describe-category.Rd | 9 crunch-1.15.0/crunch/man/describe.Rd | 49 - crunch-1.15.0/crunch/man/dichotomize.Rd | 17 crunch-1.15.0/crunch/man/dim-dataset.Rd | 3 crunch-1.15.0/crunch/man/dropRows.Rd | 1 crunch-1.15.0/crunch/man/duplicated.Rd | 3 crunch-1.15.0/crunch/man/embedCrunchBox.Rd | 1 crunch-1.15.0/crunch/man/exclusion.Rd | 1 crunch-1.15.0/crunch/man/exportDataset.Rd | 4 crunch-1.15.0/crunch/man/expressions.Rd | 19 crunch-1.15.0/crunch/man/filter-catalog.Rd | 3 crunch-1.15.0/crunch/man/flattenOrder.Rd | 1 crunch-1.15.0/crunch/man/flipArrays.Rd | 1 crunch-1.15.0/crunch/man/forkDataset.Rd | 1 crunch-1.15.0/crunch/man/getAccountUserCatalog.Rd | 1 crunch-1.15.0/crunch/man/getTeams.Rd | 1 crunch-1.15.0/crunch/man/grouped.Rd | 1 crunch-1.15.0/crunch/man/handleAPIresponse.Rd | 1 crunch-1.15.0/crunch/man/hiddenVariables.Rd | 1 crunch-1.15.0/crunch/man/hide.Rd | 3 crunch-1.15.0/crunch/man/hideVariables.Rd | 3 crunch-1.15.0/crunch/man/http-methods.Rd | 7 crunch-1.15.0/crunch/man/index.Rd | 3 crunch-1.15.0/crunch/man/is-na-categories.Rd | 4 crunch-1.15.0/crunch/man/is-public.Rd |only crunch-1.15.0/crunch/man/is.editor.Rd | 5 crunch-1.15.0/crunch/man/joinDatasets.Rd | 3 crunch-1.15.0/crunch/man/listDatasets.Rd | 1 crunch-1.15.0/crunch/man/loadDataset.Rd | 1 crunch-1.15.0/crunch/man/locateEntity.Rd | 1 crunch-1.15.0/crunch/man/lock.Rd | 1 crunch-1.15.0/crunch/man/login.Rd | 1 crunch-1.15.0/crunch/man/logout.Rd | 1 crunch-1.15.0/crunch/man/makeArray.Rd | 3 crunch-1.15.0/crunch/man/me.Rd | 1 crunch-1.15.0/crunch/man/mergeFork.Rd | 1 crunch-1.15.0/crunch/man/moveToGroup.Rd | 1 crunch-1.15.0/crunch/man/multitable-catalog.Rd |only crunch-1.15.0/crunch/man/na-omit-categories.Rd | 1 crunch-1.15.0/crunch/man/newDataset.Rd | 1 crunch-1.15.0/crunch/man/newDatasetByCSV.Rd | 1 crunch-1.15.0/crunch/man/newDatasetByColumn.Rd | 1 crunch-1.15.0/crunch/man/newDatasetFromFile.Rd | 1 crunch-1.15.0/crunch/man/newFilter.Rd | 1 crunch-1.15.0/crunch/man/newMultitable.Rd |only crunch-1.15.0/crunch/man/newProject.Rd | 1 crunch-1.15.0/crunch/man/ordering.Rd | 9 crunch-1.15.0/crunch/man/owners.Rd | 3 crunch-1.15.0/crunch/man/permissions.Rd | 1 crunch-1.15.0/crunch/man/preCrunchBoxCheck.Rd | 1 crunch-1.15.0/crunch/man/project-icon.Rd | 3 crunch-1.15.0/crunch/man/projects.Rd | 1 crunch-1.15.0/crunch/man/refresh.Rd | 3 crunch-1.15.0/crunch/man/removeEmptyGroups.Rd | 1 crunch-1.15.0/crunch/man/restoreVersion.Rd | 1 crunch-1.15.0/crunch/man/saveVersion.Rd | 1 crunch-1.15.0/crunch/man/self.Rd | 3 crunch-1.15.0/crunch/man/serialPaste.Rd | 1 crunch-1.15.0/crunch/man/session-extract.Rd | 7 crunch-1.15.0/crunch/man/session.Rd | 1 crunch-1.15.0/crunch/man/session_store.Rd | 1 crunch-1.15.0/crunch/man/setEntitySlot.Rd | 1 crunch-1.15.0/crunch/man/settings.Rd | 1 crunch-1.15.0/crunch/man/share.Rd | 1 crunch-1.15.0/crunch/man/shojiURL.Rd | 1 crunch-1.15.0/crunch/man/shojifyMetadata.Rd | 1 crunch-1.15.0/crunch/man/show-crunch.Rd | 16 crunch-1.15.0/crunch/man/subvars-extract.Rd | 27 crunch-1.15.0/crunch/man/tabBook.Rd |only crunch-1.15.0/crunch/man/tabbook-methods.Rd |only crunch-1.15.0/crunch/man/table.Rd | 1 crunch-1.15.0/crunch/man/teams.Rd | 11 crunch-1.15.0/crunch/man/temp.options.Rd | 3 crunch-1.15.0/crunch/man/toVariable.Rd | 12 crunch-1.15.0/crunch/man/tojson-crunch.Rd | 9 crunch-1.15.0/crunch/man/tokenAuth.Rd | 1 crunch-1.15.0/crunch/man/tuple-methods.Rd | 23 crunch-1.15.0/crunch/man/type.Rd | 3 crunch-1.15.0/crunch/man/unbind.Rd | 1 crunch-1.15.0/crunch/man/unshare.Rd | 1 crunch-1.15.0/crunch/man/updateDatasetList.Rd | 1 crunch-1.15.0/crunch/man/urls.Rd | 13 crunch-1.15.0/crunch/man/var-categories.Rd | 21 crunch-1.15.0/crunch/man/variable-extract.Rd | 5 crunch-1.15.0/crunch/man/variable-to-R.Rd | 3 crunch-1.15.0/crunch/man/variable-update.Rd | 25 crunch-1.15.0/crunch/man/variableMetadata.Rd | 1 crunch-1.15.0/crunch/man/versions.Rd | 1 crunch-1.15.0/crunch/man/weight.Rd | 1 crunch-1.15.0/crunch/man/which.Rd | 1 crunch-1.15.0/crunch/man/with-context-manager.Rd | 1 crunch-1.15.0/crunch/tests/testthat/api/datasets/1.json | 1 crunch-1.15.0/crunch/tests/testthat/api/datasets/1/multitables |only crunch-1.15.0/crunch/tests/testthat/api/datasets/1/multitables.json |only crunch-1.15.0/crunch/tests/testthat/api/datasets/3.json | 1 crunch-1.15.0/crunch/tests/testthat/api/datasets/3/multitables.json |only crunch-1.15.0/crunch/tests/testthat/helper-contexts.R | 6 crunch-1.15.0/crunch/tests/testthat/helper.R | 2 crunch-1.15.0/crunch/tests/testthat/test-append-conflicts.R | 24 crunch-1.15.0/crunch/tests/testthat/test-append-debug.R | 4 crunch-1.15.0/crunch/tests/testthat/test-cube-bases.R |only crunch-1.15.0/crunch/tests/testthat/test-cube-errors.R | 57 - crunch-1.15.0/crunch/tests/testthat/test-cubes.R | 267 +++---- crunch-1.15.0/crunch/tests/testthat/test-filters.R | 2 crunch-1.15.0/crunch/tests/testthat/test-multitables.R |only crunch-1.15.0/crunch/tests/testthat/test-progress.R | 8 crunch-1.15.0/crunch/tests/testthat/test-projects.R | 2 crunch-1.15.0/crunch/tests/testthat/test-variable-catalog.R | 4 crunch-1.15.0/crunch/tests/testthat/test-versioning.R | 8 crunch-1.15.0/crunch/tests/testthat/test-weighting.R | 4 188 files changed, 981 insertions(+), 1104 deletions(-)
Title: Alternative Factor Coding Matrices for Linear Model Formulae
Description: A collection of coding functions as alternatives to the standard
functions in the stats package, which have names starting with 'contr.'. Their
main advantage is that they provide a consistent method for defining marginal
effects in multi-way factorial models. In a simple one-way ANOVA model the
intercept term is always the simple average of the class means.
Author: Bill Venables
Maintainer: Bill Venables <Bill.Venables@gmail.com>
Diff between codingMatrices versions 0.2.1 dated 2016-07-09 and 0.2.2 dated 2017-02-23
DESCRIPTION | 8 MD5 | 14 NAMESPACE | 34 - R/code_extra.R | 864 ++++++++++++++++++++++---------------------- build/vignette.rds |binary inst/doc/codingMatrices.pdf |binary man/Codings.Rd | 241 ++++++------ man/mean_contrasts.Rd | 47 +- 8 files changed, 603 insertions(+), 605 deletions(-)
More information about codingMatrices at CRAN
Permanent link
Title: Formal Modeling for Psychology
Description: Formal psychological models, independently-replicated data sets against which to test them, and simulation archives.
Author: Andy Wills
Maintainer: Andy Wills <andy@willslab.co.uk>
Diff between catlearn versions 0.3 dated 2016-08-18 and 0.4 dated 2017-02-23
DESCRIPTION | 8 ++++---- MD5 | 29 ++++++++++++++++++----------- NAMESPACE | 4 +++- R/RcppExports.R | 6 +++++- R/nosof88train.R | 5 ++++- R/nosof94train.R | 8 ++++---- R/shin92train.R | 5 +++-- R/slpDIVA.R |only R/slpRW.R |only man/nosof88train.Rd | 24 ++++++++++++++---------- man/nosof94train.Rd | 22 +++++++++++++--------- man/shin92train.Rd | 18 ++++++++++++------ man/slpALCOVE.Rd | 10 +++++----- man/slpCOVIS.Rd |only man/slpDIVA.Rd |only man/slpRW.Rd |only src/RcppExports.cpp | 26 +++++++++++++++++++++----- src/init.c |only src/slpcovis.cpp |only 19 files changed, 106 insertions(+), 59 deletions(-)
Title: Tools for Simplifying the Population and Querying of SQLite
Databases
Description: Provides objects and accompanying methods which facilitates populating and querying SQLite databases.
Author: Daniel Bottomly [cre, aut],
Shannon McWeeney [aut],
Beth Wilmot [aut]
Maintainer: Daniel Bottomly <bottomly@ohsu.edu>
Diff between poplite versions 0.99.16 dated 2015-02-12 and 0.99.17.3 dated 2017-02-23
DESCRIPTION | 12 ++-- MD5 | 20 +++--- NAMESPACE | 8 ++ R/Database.R | 125 +++++++++++++++++++++++++++--------------- R/tableSchemaList.R | 104 +++++++++++++++++++--------------- README.md | 12 ++-- build/vignette.rds |binary data/clinical.rda |binary inst/doc/poplite.pdf |binary man/Database.Rd | 3 + tests/testthat/test-poplite.R | 18 ++++-- 11 files changed, 185 insertions(+), 117 deletions(-)