Thu, 23 Feb 2017

Package hasseDiagram updated to version 0.1.3 with previous version 0.1.2 dated 2017-01-15

Title: Drawing Hasse Diagram
Description: Drawing Hasse diagram - visualization of transitive reduction of a finite partially ordered set.
Author: Krzysztof Ciomek
Maintainer: Krzysztof Ciomek <k.ciomek@gmail.com>

Diff between hasseDiagram versions 0.1.2 dated 2017-01-15 and 0.1.3 dated 2017-02-23

 DESCRIPTION                 |    8 ++++----
 MD5                         |    8 ++++----
 NAMESPACE                   |    1 +
 R/hasse.R                   |    1 +
 man/hasseDiagram-package.Rd |    4 ++--
 5 files changed, 12 insertions(+), 10 deletions(-)

More information about hasseDiagram at CRAN
Permanent link

Package autoimage updated to version 1.2 with previous version 1.1 dated 2017-01-26

Title: Multiple Heat Maps for Projected Coordinates
Description: Functions for displaying multiple images with a color scale, i.e., heat maps, possibly with projected coordinates. The package relies on the base graphics system, so graphics are rendered rapidly.
Author: Joshua French
Maintainer: Joshua French <joshua.french@ucdenver.edu>

Diff between autoimage versions 1.1 dated 2017-01-26 and 1.2 dated 2017-02-23

 DESCRIPTION            |    8 ++++----
 MD5                    |   14 +++++++-------
 NEWS                   |    5 ++++-
 R/narccap.R            |   25 +++++++++++++++++--------
 inst/doc/vignette.Rmd  |   15 +++++++++++----
 inst/doc/vignette.html |   19 +++++++++++++------
 man/narccap.Rd         |   25 +++++++++++++++++--------
 vignettes/vignette.Rmd |   15 +++++++++++----
 8 files changed, 84 insertions(+), 42 deletions(-)

More information about autoimage at CRAN
Permanent link

Package gower updated to version 0.1.2 with previous version 0.1.1 dated 2016-08-26

Title: Gower's Distance
Description: Compute Gower's distance (or similarity) coefficient between records. Compute the top-n matches between records. Core algorithms are executed in parallel on systems supporting OpenMP.
Author: Mark van der Loo [aut, cre]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>

Diff between gower versions 0.1.1 dated 2016-08-26 and 0.1.2 dated 2017-02-23

 DESCRIPTION             |   10 +++++-----
 MD5                     |   21 +++++++++++----------
 NAMESPACE               |    3 +--
 NEWS                    |    4 ++++
 R/gower-pkg.R           |    2 +-
 R/gower.R               |    4 ++--
 inst/doc/intro.html     |    4 ++--
 man/gower-package.Rd    |    1 -
 man/gower_dist.Rd       |    2 +-
 man/gower_topn.Rd       |    1 -
 src/R_register_native.c |only
 src/gower.c             |    6 +++++-
 12 files changed, 32 insertions(+), 26 deletions(-)

More information about gower at CRAN
Permanent link

Package Epi updated to version 2.10 with previous version 2.7 dated 2016-10-04

Title: A Package for Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in the Lexis diagram, i.e. register and cohort follow-up data, in particular representation, manipulation and simulation of multistate data - the Lexis suite of functions, which includes interfaces to 'mstate', 'etm' and 'cmprsk' packages. Also contains functions for Age-Period-Cohort and Lee-Carter modeling and a function for interval censored data and some useful functions for tabulation and plotting, as well as a number of epidemiological datasets.
Author: Bendix Carstensen [aut, cre], Martyn Plummer [aut], Esa Laara [ctb], Michael Hills [ctb]
Maintainer: Bendix Carstensen <b@bxc.dk>

Diff between Epi versions 2.7 dated 2016-10-04 and 2.10 dated 2017-02-23

 Epi-2.10/Epi/CHANGES                |   32 +++
 Epi-2.10/Epi/DESCRIPTION            |   16 -
 Epi-2.10/Epi/MD5                    |   74 ++++----
 Epi-2.10/Epi/NAMESPACE              |    2 
 Epi-2.10/Epi/R/clogistic.R          |    5 
 Epi-2.10/Epi/R/crr.Lexis.r          |   18 +-
 Epi-2.10/Epi/R/lls.R                |   19 +-
 Epi-2.10/Epi/R/mcutLexis.R          |only
 Epi-2.10/Epi/build/vignette.rds     |binary
 Epi-2.10/Epi/data/DMepi.rda         |only
 Epi-2.10/Epi/inst/doc/Follow-up.R   |  318 ++++++++++++++++++------------------
 Epi-2.10/Epi/inst/doc/Follow-up.pdf |binary
 Epi-2.10/Epi/inst/doc/index.html    |    3 
 Epi-2.10/Epi/inst/doc/simLexis.R    |   24 +-
 Epi-2.10/Epi/inst/doc/simLexis.pdf  |binary
 Epi-2.10/Epi/inst/doc/simLexis.rnw  |    1 
 Epi-2.10/Epi/inst/doc/yll.R         |only
 Epi-2.10/Epi/inst/doc/yll.pdf       |only
 Epi-2.10/Epi/inst/doc/yll.rnw       |only
 Epi-2.10/Epi/man/DMepi.Rd           |only
 Epi-2.10/Epi/man/Icens.Rd           |    2 
 Epi-2.10/Epi/man/Ns.Rd              |    2 
 Epi-2.10/Epi/man/cal.yr.Rd          |    2 
 Epi-2.10/Epi/man/cutLexis.Rd        |    2 
 Epi-2.10/Epi/man/erl.Rd             |   28 +--
 Epi-2.10/Epi/man/fit.mult.Rd        |    2 
 Epi-2.10/Epi/man/foreign.Lexis.Rd   |    2 
 Epi-2.10/Epi/man/gen.exp.Rd         |   22 +-
 Epi-2.10/Epi/man/mcutLexis.Rd       |only
 Epi-2.10/Epi/man/ncut.Rd            |    2 
 Epi-2.10/Epi/man/nice.Rd            |    2 
 Epi-2.10/Epi/man/plotEst.Rd         |    2 
 Epi-2.10/Epi/man/stack.Lexis.Rd     |    2 
 Epi-2.10/Epi/man/summary.Lexis.rd   |    4 
 Epi-2.10/Epi/src/chinv2.c           |    4 
 Epi-2.10/Epi/src/cholesky2.c        |    4 
 Epi-2.10/Epi/src/chsolve2.c         |    4 
 Epi-2.10/Epi/src/clogit.c           |    6 
 Epi-2.10/Epi/src/init.c             |only
 Epi-2.10/Epi/vignettes/index.html   |    3 
 Epi-2.10/Epi/vignettes/simLexis.rnw |    7 
 Epi-2.10/Epi/vignettes/yll.rnw      |only
 Epi-2.7/Epi/R/zzz.R                 |only
 43 files changed, 336 insertions(+), 278 deletions(-)

More information about Epi at CRAN
Permanent link

Package detzrcr updated to version 0.1.3 with previous version 0.1.2 dated 2016-10-28

Title: Compare Detrital Zircon Suites
Description: Compare detrital zircon suites by uploading univariate, U-Pb age, or bivariate, U-Pb age and Lu-Hf data, in a 'shiny'-based user-interface. Outputs publication quality figures using 'ggplot2', and tables of statistics currently in use in the detrital zircon geochronology community.
Author: Magnus Kristoffersen [aut, cre]
Maintainer: Magnus Kristoffersen <magnus.kristoffersen@geo.uio.no>

Diff between detzrcr versions 0.1.2 dated 2016-10-28 and 0.1.3 dated 2017-02-23

 DESCRIPTION                       |   10 
 MD5                               |  120 +-
 NEWS.md                           |    6 
 R/calculations.R                  |    1 
 R/plotting.R                      |    2 
 README.md                         |    2 
 build                             |only
 inst/CITATION                     |    4 
 inst/doc                          |only
 inst/extdata/Natal_group.csv      | 1911 +++++++++++++++++++++++++-------------
 inst/shiny-apps/detzrcr_app/app.R |   13 
 man/Natal_group.Rd                |    1 
 man/calc_dens.Rd                  |    1 
 man/calc_dens_hist.Rd             |    1 
 man/calc_dkw.Rd                   |    1 
 man/calc_hf.Rd                    |    1 
 man/calc_o_param.Rd               |    1 
 man/calc_quantiles.Rd             |    1 
 man/check_conc.Rd                 |    1 
 man/combine_matrices.Rd           |    1 
 man/dzr_mix.Rd                    |    1 
 man/find_plot_max.Rd              |    1 
 man/find_plot_min.Rd              |    1 
 man/find_plot_min_max.Rd          |    1 
 man/hf_lines.Rd                   |    1 
 man/hfhf_chur.Rd                  |    1 
 man/hfhf_dm.Rd                    |    1 
 man/lambda_lu.Rd                  |    1 
 man/lambda_u235.Rd                |    1 
 man/lambda_u238.Rd                |    1 
 man/luhf_chur.Rd                  |    1 
 man/luhf_dm.Rd                    |    1 
 man/luhf_zrc.Rd                   |    1 
 man/make_tiling.Rd                |    1 
 man/o_param_matrix_age.Rd         |    1 
 man/o_param_matrix_tdm.Rd         |    1 
 man/plot_axis_lim.Rd              |    1 
 man/plot_bw_theme.Rd              |    1 
 man/plot_dens.Rd                  |    1 
 man/plot_dens_hist.Rd             |    1 
 man/plot_ecdf.Rd                  |    1 
 man/plot_hf.Rd                    |    1 
 man/plot_labels.Rd                |    1 
 man/plot_point_scale.Rd           |    1 
 man/plot_quantiles.Rd             |    1 
 man/plot_text_options.Rd          |    1 
 man/plot_tile.Rd                  |    1 
 man/populate_matrix.Rd            |    1 
 man/quant_bounds.Rd               |    1 
 man/run_detzrcr.Rd                |    1 
 man/satkoski_1d.Rd                |    1 
 man/satkoski_1d_matrix.Rd         |    1 
 man/satkoski_2d.Rd                |    1 
 man/satkoski_2d_matrix.Rd         |    1 
 man/tile_func.Rd                  |    1 
 man/tiling.Rd                     |    1 
 man/u238_u235_ratio.Rd            |    1 
 vignettes                         |only
 58 files changed, 1382 insertions(+), 733 deletions(-)

More information about detzrcr at CRAN
Permanent link

Package bestglm updated to version 0.36 with previous version 0.35 dated 2017-02-06

Title: Best Subset GLM
Description: Best subset glm using information criteria or cross-validation.
Author: A.I. McLeod and Changjiang Xu
Maintainer: A.I. McLeod <aimcleod@uwo.ca>

Diff between bestglm versions 0.35 dated 2017-02-06 and 0.36 dated 2017-02-23

 bestglm-0.35/bestglm/R/bestglm-internal.R      |only
 bestglm-0.35/bestglm/src                       |only
 bestglm-0.36/bestglm/DESCRIPTION               |   12 ++++++------
 bestglm-0.36/bestglm/MD5                       |   23 ++++++++++++++++-------
 bestglm-0.36/bestglm/NAMESPACE                 |   18 ++++++++++--------
 bestglm-0.36/bestglm/NEWS                      |    5 +++++
 bestglm-0.36/bestglm/R/glmnetPredict.R         |only
 bestglm-0.36/bestglm/R/grpregPredict.R         |only
 bestglm-0.36/bestglm/R/sphereX.R               |only
 bestglm-0.36/bestglm/R/to.binary.R             |   15 ++++-----------
 bestglm-0.36/bestglm/data/Iowa.rda             |only
 bestglm-0.36/bestglm/man/Iowa.Rd               |only
 bestglm-0.36/bestglm/man/NNPredict.Rd          |only
 bestglm-0.36/bestglm/man/bestglm-package.Rd    |    3 ++-
 bestglm-0.36/bestglm/man/glmnetGridTable.Rd    |only
 bestglm-0.36/bestglm/man/glmnetPredict.Rd      |only
 bestglm-0.36/bestglm/man/grpregPredict.Rd      |only
 bestglm-0.36/bestglm/man/sphereX.Rd            |only
 bestglm-0.36/bestglm/man/trainTestPartition.Rd |only
 19 files changed, 43 insertions(+), 33 deletions(-)

More information about bestglm at CRAN
Permanent link

New package pltesim with initial version 0.1.1
Package: pltesim
Type: Package
Title: Simulate Probabilistic Long-Term Effects in Models with Temporal Dependence
Description: Simulate probabilistic long-term effects in models with temporal dependence.
Version: 0.1.1
Date: 2017-02-23
Authors@R: c( person("Christopher", "Gandrud", email = "christopher.gandrud@gmail.com", role = c("aut", "cre")), person("Laron K.", "Williams", role = "aut") )
BugReports: https://github.com/christophergandrud/pltesim/issues
License: GPL (>= 3)
LazyData: TRUE
RoxygenNote: 6.0.1
Imports: coreSim, ggplot2
Suggests: testthat
NeedsCompilation: no
Packaged: 2017-02-23 16:47:45 UTC; cgandrud
Author: Christopher Gandrud [aut, cre], Laron K. Williams [aut]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Repository: CRAN
Date/Publication: 2017-02-23 17:58:07

More information about pltesim at CRAN
Permanent link

Package MAMS updated to version 1.01 with previous version 1.0 dated 2016-07-19

Title: Designing Multi-Arm Multi-Stage Studies
Description: Designing multi-arm multi-stage studies with normal endpoints and known variance.
Author: Thomas Jaki <jaki.thomas@gmail.com>, Dominic Magirr <d.magirr@gmail.com>, Philip Pallmann <p.pallmann@lancaster.ac.uk>
Maintainer: Thomas Jaki <jaki.thomas@gmail.com>

Diff between MAMS versions 1.0 dated 2016-07-19 and 1.01 dated 2017-02-23

 DESCRIPTION   |    8 ++++----
 MD5           |    8 ++++----
 R/mams.sim.R  |    8 +++++++-
 inst/CITATION |    2 +-
 inst/NEWS     |    5 +++++
 5 files changed, 21 insertions(+), 10 deletions(-)

More information about MAMS at CRAN
Permanent link

Package lingtypology updated to version 1.0.2 with previous version 1.0.1 dated 2017-01-29

Title: Linguistic Typology and Mapping
Description: Provides R with the Glottolog database <http://glottolog.org> and some more abilities for purposes of linguistic cartography. The Glottolog database contains the catalogue of languages of the world. This package helps researchers to make a linguistic maps, using philosophy of the Cross-Linguistic Linked Data project <http://clld.org/>, which allows for while at the same time facilitating uniform access to the data across publications. A tutorial for this package is available on GitHub pages <https://agricolamz.github.io/lingtypology/> and package vignette.
Author: George Moroz
Maintainer: George Moroz <agricolamz@gmail.com>

Diff between lingtypology versions 1.0.1 dated 2017-01-29 and 1.0.2 dated 2017-02-23

 DESCRIPTION                      |    9 
 MD5                              |   70 +++----
 NAMESPACE                        |    9 
 NEWS                             |   13 +
 R/aff.lang.R                     |   21 +-
 R/area.lang.R                    |   21 +-
 R/country.lang.R                 |   32 +--
 R/is.glottolog.R                 |   51 ++---
 R/iso.lang.R                     |   20 +-
 R/lang.aff.R                     |   28 +-
 R/lang.country.R                 |   41 ++--
 R/lang.iso.R                     |   20 +-
 R/lat.lang.R                     |   24 +-
 R/long.lang.R                    |   24 +-
 R/makelink.R                     |   22 +-
 R/map.feature.R                  |  373 +++++++++++++++++++--------------------
 README.md                        |   10 -
 data/glottolog.modified.RData    |binary
 data/glottolog.original.RData    |binary
 inst/doc/lingtypology.R          |   57 +++++
 inst/doc/lingtypology.Rmd        |  166 +++++++++++++----
 inst/doc/lingtypology.html       |  283 +++++++++++++++++++----------
 inst/doc/manual/lingtypology.pdf |binary
 man/aff.lang.Rd                  |    6 
 man/area.lang.Rd                 |    6 
 man/country.lang.Rd              |    8 
 man/is.glottolog.Rd              |    8 
 man/iso.lang.Rd                  |    6 
 man/lang.aff.Rd                  |    8 
 man/lang.country.Rd              |   10 -
 man/lang.iso.Rd                  |    6 
 man/lat.lang.Rd                  |   10 -
 man/long.lang.Rd                 |   10 -
 man/makelink.Rd                  |    2 
 man/map.feature.Rd               |   51 ++++-
 vignettes/lingtypology.Rmd       |  166 +++++++++++++----
 36 files changed, 1008 insertions(+), 583 deletions(-)

More information about lingtypology at CRAN
Permanent link

New package InvasionCorrection with initial version 0.1
Package: InvasionCorrection
Type: Package
Title: Invasion Correction
Version: 0.1
Date: 2017-02-20
Author: Marcus Rosenblatt
Maintainer: Marcus Rosenblatt <marcus.rosenblatt@fdm.uni-freiburg.de>
Description: The correction is achieved under the assumption that non-migrating cells of the essay approximately form a quadratic flow profile due to frictional effects, compare law of Hagen-Poiseuille for flow in a tube. The script fits a conical plane to give xyz-coordinates of the cells. It outputs the number of migrated cells and the new corrected coordinates.
License: GPL-3
Depends: lattice, stats, utils
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2017-02-23 16:42:01 UTC; marcus
Repository: CRAN
Date/Publication: 2017-02-23 17:58:01

More information about InvasionCorrection at CRAN
Permanent link

Package spdep updated to version 0.6-11 with previous version 0.6-10 dated 2017-02-21

Title: Spatial Dependence: Weighting Schemes, Statistics and Models
Description: A collection of functions to create spatial weights matrix objects from polygon contiguities, from point patterns by distance and tessellations, for summarizing these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree; a collection of tests for spatial autocorrelation, including global Moran's I, APLE, Geary's C, Hubert/Mantel general cross product statistic, Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G and multicoloured join count statistics, local Moran's I and Getis/Ord G, saddlepoint approximations and exact tests for global and local Moran's I; and functions for estimating spatial simultaneous autoregressive (SAR) lag and error models, impact measures for lag models, weighted and unweighted SAR and CAR spatial regression models, semi-parametric and Moran eigenvector spatial filtering, GM SAR error models, and generalized spatial two stage least squares models.
Author: Roger Bivand [cre, aut], Micah Altman [ctb], Luc Anselin [ctb], Renato Assunção [ctb], Olaf Berke [ctb], Andrew Bernat [ctb], Guillaume Blanchet [ctb], Eric Blankmeyer [ctb], Marilia Carvalho [ctb], Bjarke Christensen [ctb], Yongwan Chun [ctb], Carsten Dormann [ctb], Stéphane Dray [ctb], Virgilio Gómez-Rubio [ctb], Martin Gubri [ctb], Rein Halbersma [ctb], Elias Krainski [ctb], Pierre Legendre [ctb], Nicholas Lewin-Koh [ctb], Hongfei Li [ctb], Jielai Ma [ctb], Abhirup Mallik [ctb, trl], Giovanni Millo [ctb], Werner Mueller [ctb], Hisaji Ono [ctb], Pedro Peres-Neto [ctb], Gianfranco Piras [ctb], Markus Reder [ctb], Michael Tiefelsdorf [ctb], Danlin Yu [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>

Diff between spdep versions 0.6-10 dated 2017-02-21 and 0.6-11 dated 2017-02-23

 ChangeLog                     |    9 +++++++++
 DESCRIPTION                   |    8 ++++----
 MD5                           |   18 +++++++++---------
 NAMESPACE                     |   11 ++++++++++-
 inst/ChangeLog                |    9 +++++++++
 inst/doc/CO69.pdf             |binary
 inst/doc/SpatialFiltering.pdf |binary
 inst/doc/nb.pdf               |binary
 inst/doc/nb_igraph.html       |    7 ++++++-
 inst/doc/sids.pdf             |binary
 10 files changed, 47 insertions(+), 15 deletions(-)

More information about spdep at CRAN
Permanent link

Package red updated to version 1.0.0 with previous version 0.2.0 dated 2016-12-07

Title: IUCN Redlisting Tools
Description: Includes algorithms to facilitate the assessment of extinction risk of species according to the IUCN (International Union for Conservation of Nature, see <http://www.iucn.org> for more information) red list criteria.
Author: Pedro Cardoso
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>

Diff between red versions 0.2.0 dated 2016-12-07 and 1.0.0 dated 2017-02-23

 red-0.2.0/red/data/data.layers.rda       |only
 red-0.2.0/red/data/data.records.rda      |only
 red-0.2.0/red/data/data.sp.rda           |only
 red-0.2.0/red/data/data.worldborders.rda |only
 red-0.2.0/red/man/countr.Rd              |only
 red-0.2.0/red/man/data.layers.Rd         |only
 red-0.2.0/red/man/data.records.Rd        |only
 red-0.2.0/red/man/data.sp.Rd             |only
 red-0.2.0/red/man/data.worldborders.Rd   |only
 red-1.0.0/red/DESCRIPTION                |   18 
 red-1.0.0/red/MD5                        |   70 +-
 red-1.0.0/red/NAMESPACE                  |    6 
 red-1.0.0/red/R/red.R                    |  827 +++++++++++++++++++------------
 red-1.0.0/red/data/red.distribution.rda  |only
 red-1.0.0/red/data/red.layers.rda        |only
 red-1.0.0/red/data/red.records.rda       |only
 red-1.0.0/red/data/worldborders.rda      |only
 red-1.0.0/red/man/aoo.Rd                 |   14 
 red-1.0.0/red/man/countries.Rd           |only
 red-1.0.0/red/man/elevation.Rd           |only
 red-1.0.0/red/man/eoo.Rd                 |   10 
 red-1.0.0/red/man/kml.Rd                 |    2 
 red-1.0.0/red/man/map.draw.Rd            |   12 
 red-1.0.0/red/man/map.easy.Rd            |   35 -
 red-1.0.0/red/man/map.habitat.Rd         |   14 
 red-1.0.0/red/man/map.points.Rd          |   14 
 red-1.0.0/red/man/map.sdm.Rd             |   32 -
 red-1.0.0/red/man/outliers.Rd            |   11 
 red-1.0.0/red/man/raster.clean.Rd        |    6 
 red-1.0.0/red/man/raster.east.Rd         |    8 
 red-1.0.0/red/man/raster.lat.Rd          |    4 
 red-1.0.0/red/man/raster.long.Rd         |    4 
 red-1.0.0/red/man/raster.north.Rd        |    8 
 red-1.0.0/red/man/raster.read.Rd         |   20 
 red-1.0.0/red/man/raster.reduce.Rd       |    2 
 red-1.0.0/red/man/records.Rd             |    8 
 red-1.0.0/red/man/red.distribution.Rd    |only
 red-1.0.0/red/man/red.getDir.Rd          |only
 red-1.0.0/red/man/red.layers.Rd          |only
 red-1.0.0/red/man/red.records.Rd         |only
 red-1.0.0/red/man/red.setDir.Rd          |only
 red-1.0.0/red/man/red.setup.Rd           |    6 
 red-1.0.0/red/man/rli.Rd                 |    8 
 red-1.0.0/red/man/rli.multi.Rd           |    8 
 red-1.0.0/red/man/rli.sampled.Rd         |only
 red-1.0.0/red/man/thin.Rd                |    6 
 red-1.0.0/red/man/worldborders.Rd        |only
 47 files changed, 712 insertions(+), 441 deletions(-)

More information about red at CRAN
Permanent link

Package planor updated to version 1.3-6 with previous version 1.0-1 dated 2016-06-30

Title: Generation of Regular Factorial Designs
Description: Automatic generation of regular factorial designs, including fractional designs, orthogonal block designs, row-column designs and split-plots.
Author: Hervé Monod, Annie Bouvier, André Kobilinsky
Maintainer: Annie Bouvier <Annie.Bouvier@inra.fr>

Diff between planor versions 1.0-1 dated 2016-06-30 and 1.3-6 dated 2017-02-23

 planor-1.0-1/planor/R/debug.R                              |only
 planor-1.3-6/planor/DESCRIPTION                            |   23 
 planor-1.3-6/planor/MD5                                    |  101 
 planor-1.3-6/planor/NAMESPACE                              |   13 
 planor-1.3-6/planor/NEWS                                   |   70 
 planor-1.3-6/planor/R/basep.R                              |  217 
 planor-1.3-6/planor/R/designfactors.R                      |   25 
 planor-1.3-6/planor/R/designkey.R                          |   51 
 planor-1.3-6/planor/R/generic.R                            |   23 
 planor-1.3-6/planor/R/keymatrix.R                          |  109 
 planor-1.3-6/planor/R/keyring.R                            |   25 
 planor-1.3-6/planor/R/listofdesignkeys.R                   |   30 
 planor-1.3-6/planor/R/listofkeyrings.R                     |   35 
 planor-1.3-6/planor/R/makedesignkey.R                      |   29 
 planor-1.3-6/planor/R/planor.R                             |  556 -
 planor-1.3-6/planor/R/planordesign.R                       |   29 
 planor-1.3-6/planor/R/randomize.R                          |   23 
 planor-1.3-6/planor/R/zzz.R                                |   23 
 planor-1.3-6/planor/inst/doc/PlanorInRmanual.pdf           | 3185 +++++-----
 planor-1.3-6/planor/inst/doc/planor-manual.pdf             |binary
 planor-1.3-6/planor/inst/doc/planorA.pdf                   | 3846 ++++++-------
 planor-1.3-6/planor/inst/doc/planorVignette.pdf            | 1559 ++---
 planor-1.3-6/planor/man/planor.designkey.Rd                |   13 
 planor-1.3-6/planor/man/regular.design.Rd                  |    3 
 planor-1.3-6/planor/src/Makevars                           |only
 planor-1.3-6/planor/src/inverses_basep.cpp                 |only
 planor-1.3-6/planor/src/inverses_basep.h                   |only
 planor-1.3-6/planor/src/kernelcheck.cpp                    |only
 planor-1.3-6/planor/src/kernelcheck.h                      |only
 planor-1.3-6/planor/src/planor.cpp                         | 1555 +++--
 planor-1.3-6/planor/src/subgroup.cpp                       |only
 planor-1.3-6/planor/src/subgroup.h                         |only
 planor-1.3-6/planor/src/util.cpp                           |only
 planor-1.3-6/planor/src/util.h                             |only
 planor-1.3-6/planor/src/weightorder.cpp                    |only
 planor-1.3-6/planor/src/weightorder.h                      |only
 planor-1.3-6/planor/tests/HM2.R                            |only
 planor-1.3-6/planor/tests/HM2.Rout.save                    |only
 planor-1.3-6/planor/tests/Kobi0.Rout.save                  |   21 
 planor-1.3-6/planor/tests/Kobi1.Rout.save                  |   11 
 planor-1.3-6/planor/tests/Kobi2.Rout.save                  |   18 
 planor-1.3-6/planor/tests/Kobi3.Rout.save                  |   36 
 planor-1.3-6/planor/tests/KobiRecursive.Rout.save          |    4 
 planor-1.3-6/planor/tests/NewKobi1.R                       |    4 
 planor-1.3-6/planor/tests/NewKobi1.Rout.save               |   66 
 planor-1.3-6/planor/tests/Touzeau2.R                       |   11 
 planor-1.3-6/planor/tests/Touzeau2.Rout.save               |  134 
 planor-1.3-6/planor/tests/exdes.Rda                        |only
 planor-1.3-6/planor/tests/exkey.Rda                        |only
 planor-1.3-6/planor/tests/exsimple.Rout.save               |   35 
 planor-1.3-6/planor/tests/generate.Rout.save               |   64 
 planor-1.3-6/planor/tests/haies.Rout.save                  |   24 
 planor-1.3-6/planor/tests/hmsym.R                          |only
 planor-1.3-6/planor/tests/hmsym.Rout.save                  |only
 planor-1.3-6/planor/tests/hmtestsRandomize.R               |    1 
 planor-1.3-6/planor/tests/hmtestsRandomize.Rout.save       |only
 planor-1.3-6/planor/tests/mixkey.Rout.save                 |   18 
 planor-1.3-6/planor/tests/noineligible.Rout.save           |   14 
 planor-1.3-6/planor/tests/planor-stefano2.R                |only
 planor-1.3-6/planor/tests/planor-stefano2.Rout.save        |only
 planor-1.3-6/planor/tests/planor-stefano2.random.R         |only
 planor-1.3-6/planor/tests/planor-stefano2.random.Rout.save |only
 planor-1.3-6/planor/tests/robot.R                          |only
 planor-1.3-6/planor/tests/robot.Rout.save                  |only
 64 files changed, 6356 insertions(+), 5648 deletions(-)

More information about planor at CRAN
Permanent link

Package optiSel updated to version 0.3 with previous version 0.1 dated 2016-06-27

Title: Optimum Contribution Selection and Population Genetics
Description: A framework for the optimization of breeding programs via optimum contribution selection. An easy to use set of function for computation of optimum contributions of selection candidates, and of the population genetic parameters to be optimized. These parameters can be estimated using pedigree or genotype information, and include kinships, kinships at native haplotype segments, and breed composition of crossbred individuals. They are suitable for managing genetic diversity, removing introgressed genetic material, and accelerating genetic gain. Additionally, functions are provided for computing genetic contributions from ancestors, inbreeding coefficients, the native effective size, the native genome equivalent, pedigree completeness, and for preparing and plotting pedigrees.
Author: Robin Wellmann
Maintainer: Robin Wellmann <r.wellmann@uni-hohenheim.de>

Diff between optiSel versions 0.1 dated 2016-06-27 and 0.3 dated 2017-02-23

 optiSel-0.1/optiSel/R/breedcont.R            |only
 optiSel-0.1/optiSel/R/kin.R                  |only
 optiSel-0.1/optiSel/man/Kinship.Rd           |only
 optiSel-0.1/optiSel/man/breedcont.Rd         |only
 optiSel-0.1/optiSel/man/kin.Rd               |only
 optiSel-0.3/optiSel/DESCRIPTION              |   23 -
 optiSel-0.3/optiSel/MD5                      |  134 +++++--
 optiSel-0.3/optiSel/NAMESPACE                |   46 ++
 optiSel-0.3/optiSel/R/RcppExports.R          |only
 optiSel-0.3/optiSel/R/completeness.R         |   48 +-
 optiSel-0.3/optiSel/R/conttac.R              |   44 +-
 optiSel-0.3/optiSel/R/freqlist.R             |only
 optiSel-0.3/optiSel/R/getcskip.R             |only
 optiSel-0.3/optiSel/R/getskip.R              |only
 optiSel-0.3/optiSel/R/haplofreq.R            |only
 optiSel-0.3/optiSel/R/help.opticont.R        |only
 optiSel-0.3/optiSel/R/help.opticont4mb.R     |only
 optiSel-0.3/optiSel/R/kinlist.R              |only
 optiSel-0.3/optiSel/R/kinwac.R               |   12 
 optiSel-0.3/optiSel/R/noffspring.R           |only
 optiSel-0.3/optiSel/R/opticomp.R             |only
 optiSel-0.3/optiSel/R/opticont.R             |  146 ++++---
 optiSel-0.3/optiSel/R/opticont4mb.R          |only
 optiSel-0.3/optiSel/R/pedBreedComp.R         |only
 optiSel-0.3/optiSel/R/pedIBD.R               |only
 optiSel-0.3/optiSel/R/pedIBDatN.R            |only
 optiSel-0.3/optiSel/R/pedIBDorM.R            |only
 optiSel-0.3/optiSel/R/pedInbreeding.R        |only
 optiSel-0.3/optiSel/R/pedplot.R              |    3 
 optiSel-0.3/optiSel/R/plot.HaploFreq.R       |only
 optiSel-0.3/optiSel/R/prePed.R               |   36 +
 optiSel-0.3/optiSel/R/read.indiv.R           |only
 optiSel-0.3/optiSel/R/segBreedComp.R         |only
 optiSel-0.3/optiSel/R/segIBD.R               |only
 optiSel-0.3/optiSel/R/segIBDandN.R           |only
 optiSel-0.3/optiSel/R/segIBDatN.R            |only
 optiSel-0.3/optiSel/R/segInbreeding.R        |only
 optiSel-0.3/optiSel/R/segN.R                 |only
 optiSel-0.3/optiSel/R/sim2dis.R              |only
 optiSel-0.3/optiSel/R/subPed.R               |   57 +--
 optiSel-0.3/optiSel/R/summary.Pedig.R        |only
 optiSel-0.3/optiSel/R/summary.kinwac.R       |   49 +-
 optiSel-0.3/optiSel/R/summary.opticont.R     |  253 +++++++------
 optiSel-0.3/optiSel/build                    |only
 optiSel-0.3/optiSel/data/Cattle.rda          |only
 optiSel-0.3/optiSel/data/ExamplePed.rda      |binary
 optiSel-0.3/optiSel/data/Kin.rda             |binary
 optiSel-0.3/optiSel/data/PedigWithErrors.rda |binary
 optiSel-0.3/optiSel/data/Phen.rda            |binary
 optiSel-0.3/optiSel/data/map.rda             |only
 optiSel-0.3/optiSel/inst                     |only
 optiSel-0.3/optiSel/man/Cattle.Rd            |only
 optiSel-0.3/optiSel/man/Chr1.phased.Rd       |only
 optiSel-0.3/optiSel/man/Chr2.phased.Rd       |only
 optiSel-0.3/optiSel/man/ExamplePed.Rd        |    2 
 optiSel-0.3/optiSel/man/Kin.Rd               |only
 optiSel-0.3/optiSel/man/Phen.Rd              |    2 
 optiSel-0.3/optiSel/man/completeness.Rd      |   63 ++-
 optiSel-0.3/optiSel/man/conttac.Rd           |   19 -
 optiSel-0.3/optiSel/man/freqlist.Rd          |only
 optiSel-0.3/optiSel/man/genecont.Rd          |    4 
 optiSel-0.3/optiSel/man/haplofreq.Rd         |only
 optiSel-0.3/optiSel/man/help.opticont.Rd     |    6 
 optiSel-0.3/optiSel/man/help.opticont4mb.Rd  |only
 optiSel-0.3/optiSel/man/kinlist.Rd           |only
 optiSel-0.3/optiSel/man/kinwac.Rd            |   16 
 optiSel-0.3/optiSel/man/map.Rd               |only
 optiSel-0.3/optiSel/man/noffspring.Rd        |only
 optiSel-0.3/optiSel/man/optiSel-package.Rd   |  233 +++++++++---
 optiSel-0.3/optiSel/man/opticomp.Rd          |only
 optiSel-0.3/optiSel/man/opticont.Rd          |  499 +++++++++++++--------------
 optiSel-0.3/optiSel/man/opticont4mb.Rd       |only
 optiSel-0.3/optiSel/man/pedBreedComp.Rd      |only
 optiSel-0.3/optiSel/man/pedIBD.Rd            |only
 optiSel-0.3/optiSel/man/pedIBDatN.Rd         |only
 optiSel-0.3/optiSel/man/pedIBDorM.Rd         |only
 optiSel-0.3/optiSel/man/pedInbreeding.Rd     |only
 optiSel-0.3/optiSel/man/pedplot.Rd           |    8 
 optiSel-0.3/optiSel/man/plot.HaploFreq.Rd    |only
 optiSel-0.3/optiSel/man/prePed.Rd            |    4 
 optiSel-0.3/optiSel/man/read.indiv.Rd        |only
 optiSel-0.3/optiSel/man/segBreedComp.Rd      |only
 optiSel-0.3/optiSel/man/segIBD.Rd            |only
 optiSel-0.3/optiSel/man/segIBDandN.Rd        |only
 optiSel-0.3/optiSel/man/segIBDatN.Rd         |only
 optiSel-0.3/optiSel/man/segInbreeding.Rd     |only
 optiSel-0.3/optiSel/man/segN.Rd              |only
 optiSel-0.3/optiSel/man/sim2dis.Rd           |only
 optiSel-0.3/optiSel/man/subPed.Rd            |    4 
 optiSel-0.3/optiSel/man/summary.Pedig.Rd     |only
 optiSel-0.3/optiSel/man/summary.kinwac.Rd    |   48 +-
 optiSel-0.3/optiSel/man/summary.opticont.Rd  |   29 +
 optiSel-0.3/optiSel/src                      |only
 93 files changed, 1071 insertions(+), 717 deletions(-)

More information about optiSel at CRAN
Permanent link

New package MLID with initial version 1.0.0
Package: MLID
Type: Package
Title: Multilevel Index of Dissimilarity
Version: 1.0.0
Author: Richard Harris [aut], Dewi Owen [ctb]
Maintainer: Richard Harris <rich.harris@bris.ac.uk>
Description: Tools and functions to fit a multilevel index of dissimilarity.
Depends: R (>= 3.0.2)
URL: https://github.com/profrichharris/MLID
BugReports: https://github.com/profrichharris/MLID/issues
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: nlme (>= 3.1.128), lme4 (>= 1.1.12), methods
RoxygenNote: 6.0.1
Suggests: raster (>= 2.5.8), sp (>= 1.2.3), knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-02-23 14:06:10 UTC; ggrjh
Repository: CRAN
Date/Publication: 2017-02-23 17:30:59

More information about MLID at CRAN
Permanent link

Package MDplot updated to version 1.0.0 with previous version 0.3.1 dated 2016-04-28

Title: Visualising Molecular Dynamics Analyses
Description: Provides automatization for plot generation succeeding common molecular dynamics analyses. This includes straightforward plots, such as RMSD (Root-Mean-Square-Deviation) and RMSF (Root-Mean-Square-Fluctuation) but also more sophisticated ones such as dihedral angle maps, hydrogen bonds, cluster bar plots and DSSP (Definition of Secondary Structure of Proteins) analysis. Currently able to load GROMOS, GROMACS and AMBER formats, respectively.
Author: Christian Margreitter [aut, cre]
Maintainer: Christian Margreitter <christian.margreitter@gmail.com>

Diff between MDplot versions 0.3.1 dated 2016-04-28 and 1.0.0 dated 2017-02-23

 MDplot-0.3.1/MDplot/inst/extdata/3-Helix.out                         |only
 MDplot-0.3.1/MDplot/inst/extdata/4-Helix.out                         |only
 MDplot-0.3.1/MDplot/inst/extdata/5-Helix.out                         |only
 MDplot-0.3.1/MDplot/inst/extdata/Bend.out                            |only
 MDplot-0.3.1/MDplot/inst/extdata/Beta-Bridge.out                     |only
 MDplot-0.3.1/MDplot/inst/extdata/Beta-Strand.out                     |only
 MDplot-0.3.1/MDplot/inst/extdata/Turn.out                            |only
 MDplot-0.3.1/MDplot/inst/extdata/dssp_summary_example.txt.gz         |only
 MDplot-0.3.1/MDplot/inst/extdata/rmsd1_example.txt.gz                |only
 MDplot-0.3.1/MDplot/inst/extdata/rmsd2_example.txt.gz                |only
 MDplot-0.3.1/MDplot/inst/extdata/rmsf1_example.txt.gz                |only
 MDplot-0.3.1/MDplot/inst/extdata/rmsf2_example.txt.gz                |only
 MDplot-0.3.1/MDplot/inst/extdata/timeseries_example.txt.gz           |only
 MDplot-0.3.1/MDplot/man/dssp_summary.Rd                              |only
 MDplot-0.3.1/MDplot/man/load_dssp_summary.Rd                         |only
 MDplot-1.0.0/MDplot/DESCRIPTION                                      |   11 
 MDplot-1.0.0/MDplot/MD5                                              |  138 ++-
 MDplot-1.0.0/MDplot/NAMESPACE                                        |   29 
 MDplot-1.0.0/MDplot/NEWS                                             |   34 
 MDplot-1.0.0/MDplot/R/clusters.R                                     |  215 ++++-
 MDplot-1.0.0/MDplot/R/dssp.R                                         |  302 ++++++--
 MDplot-1.0.0/MDplot/R/hbond.R                                        |  371 ++++++++--
 MDplot-1.0.0/MDplot/R/helperfunctions.R                              |  138 +++
 MDplot-1.0.0/MDplot/R/noe.R                                          |only
 MDplot-1.0.0/MDplot/R/ramachandran.R                                 |   77 +-
 MDplot-1.0.0/MDplot/R/rmsd.R                                         |  180 +++-
 MDplot-1.0.0/MDplot/R/rmsf.R                                         |   60 +
 MDplot-1.0.0/MDplot/R/timeseries.R                                   |   24 
 MDplot-1.0.0/MDplot/R/xrmsd.R                                        |   77 +-
 MDplot-1.0.0/MDplot/inst/bash/MDplot_bash.R                          |  221 +++--
 MDplot-1.0.0/MDplot/inst/bash/MDplot_install.R                       |   12 
 MDplot-1.0.0/MDplot/inst/bash/install.sh                             |    2 
 MDplot-1.0.0/MDplot/inst/bash/test.sh                                |   46 -
 MDplot-1.0.0/MDplot/inst/extdata/clusters_example_1_AMBER.txt.gz     |only
 MDplot-1.0.0/MDplot/inst/extdata/clusters_example_2_AMBER.txt.gz     |only
 MDplot-1.0.0/MDplot/inst/extdata/clusters_example_GROMACS.txt.gz     |only
 MDplot-1.0.0/MDplot/inst/extdata/clusters_ts_example_AMBER.txt.gz    |only
 MDplot-1.0.0/MDplot/inst/extdata/dssp_example.txt.gz                 |only
 MDplot-1.0.0/MDplot/inst/extdata/dssp_example_GROMACS.txt.gz         |only
 MDplot-1.0.0/MDplot/inst/extdata/dssp_ts_example                     |only
 MDplot-1.0.0/MDplot/inst/extdata/dssp_ts_example_AMBER.txt.gz        |only
 MDplot-1.0.0/MDplot/inst/extdata/hbond_example_AMBER.txt.gz          |only
 MDplot-1.0.0/MDplot/inst/extdata/hbond_example_GROMACS.txt.gz        |only
 MDplot-1.0.0/MDplot/inst/extdata/hbond_ts_example_AMBER.txt.gz       |only
 MDplot-1.0.0/MDplot/inst/extdata/hbond_ts_example_GROMACS.xpm.gz     |only
 MDplot-1.0.0/MDplot/inst/extdata/noe_example_1.txt.gz                |only
 MDplot-1.0.0/MDplot/inst/extdata/noe_example_2.txt.gz                |only
 MDplot-1.0.0/MDplot/inst/extdata/ramachandran_example.txt.gz         |binary
 MDplot-1.0.0/MDplot/inst/extdata/ramachandran_example_AMBER.txt.gz   |only
 MDplot-1.0.0/MDplot/inst/extdata/ramachandran_example_GROMACS.txt.gz |only
 MDplot-1.0.0/MDplot/inst/extdata/rmsd_example_1.txt.gz               |only
 MDplot-1.0.0/MDplot/inst/extdata/rmsd_example_2.txt.gz               |only
 MDplot-1.0.0/MDplot/inst/extdata/rmsd_example_AMBER.txt.gz           |only
 MDplot-1.0.0/MDplot/inst/extdata/rmsf_example_1.txt.gz               |only
 MDplot-1.0.0/MDplot/inst/extdata/rmsf_example_2.txt.gz               |only
 MDplot-1.0.0/MDplot/inst/extdata/rmsf_example_AMBER.txt.gz           |only
 MDplot-1.0.0/MDplot/inst/extdata/rmsf_example_GROMACS.txt.gz         |only
 MDplot-1.0.0/MDplot/inst/extdata/timeseries_example_1.txt.gz         |only
 MDplot-1.0.0/MDplot/inst/extdata/timeseries_example_2.txt.gz         |only
 MDplot-1.0.0/MDplot/inst/extdata/xrmsd_example_AMBER.txt.gz          |only
 MDplot-1.0.0/MDplot/inst/extdata/xrmsd_example_GROMACS.xpm.gz        |only
 MDplot-1.0.0/MDplot/man/MDplot-internal.Rd                           |   10 
 MDplot-1.0.0/MDplot/man/MDplot_argument-class.Rd                     |    3 
 MDplot-1.0.0/MDplot/man/TIcurve.Rd                                   |   21 
 MDplot-1.0.0/MDplot/man/clusters.Rd                                  |   14 
 MDplot-1.0.0/MDplot/man/clusters_ts.Rd                               |   10 
 MDplot-1.0.0/MDplot/man/dssp.Rd                                      |only
 MDplot-1.0.0/MDplot/man/dssp_ts.Rd                                   |   16 
 MDplot-1.0.0/MDplot/man/hbond.Rd                                     |   22 
 MDplot-1.0.0/MDplot/man/hbond_ts.Rd                                  |   34 
 MDplot-1.0.0/MDplot/man/load_TIcurve.Rd                              |   16 
 MDplot-1.0.0/MDplot/man/load_clusters.Rd                             |   28 
 MDplot-1.0.0/MDplot/man/load_clusters_ts.Rd                          |   28 
 MDplot-1.0.0/MDplot/man/load_dssp.Rd                                 |only
 MDplot-1.0.0/MDplot/man/load_dssp_ts.Rd                              |   32 
 MDplot-1.0.0/MDplot/man/load_hbond.Rd                                |   42 -
 MDplot-1.0.0/MDplot/man/load_hbond_ts.Rd                             |   26 
 MDplot-1.0.0/MDplot/man/load_noe.Rd                                  |only
 MDplot-1.0.0/MDplot/man/load_ramchandran.Rd                          |   21 
 MDplot-1.0.0/MDplot/man/load_rmsd.Rd                                 |   26 
 MDplot-1.0.0/MDplot/man/load_rmsf.Rd                                 |   23 
 MDplot-1.0.0/MDplot/man/load_timeseries.Rd                           |   18 
 MDplot-1.0.0/MDplot/man/load_xrmsd.Rd                                |   28 
 MDplot-1.0.0/MDplot/man/noe.Rd                                       |only
 MDplot-1.0.0/MDplot/man/ramachandran.Rd                              |   26 
 MDplot-1.0.0/MDplot/man/rmsd.Rd                                      |   31 
 MDplot-1.0.0/MDplot/man/rmsd_average.Rd                              |only
 MDplot-1.0.0/MDplot/man/rmsf.Rd                                      |   30 
 MDplot-1.0.0/MDplot/man/timeseries.Rd                                |   23 
 MDplot-1.0.0/MDplot/man/translate_aminoacids.Rd                      |   12 
 MDplot-1.0.0/MDplot/man/xrmsd.Rd                                     |   19 
 91 files changed, 1849 insertions(+), 647 deletions(-)

More information about MDplot at CRAN
Permanent link

Package Mcomp updated to version 2.6 with previous version 2.05 dated 2013-06-19

Title: Data from the M-Competitions
Description: The 1001 time series from the M-competition (Makridakis et al. 1982) <DOI:10.1002/for.3980010202> and the 3003 time series from the IJF-M3 competition (Makridakis and Hibon, 2000) <DOI:10.1016/S0169-2070(00)00057-1>.
Author: Rob J Hyndman with assistance from Muhammad Akram, Christoph Bergmeir and Mitchell O'Hara-Wild
Maintainer: Rob J Hyndman <Rob.Hyndman@monash.edu>

Diff between Mcomp versions 2.05 dated 2013-06-19 and 2.6 dated 2017-02-23

 ChangeLog         |   54 +++++-----
 DESCRIPTION       |   20 +--
 MD5               |   14 +-
 NAMESPACE         |   20 ++-
 R/Mdata.R         |  283 +++++++++++++++++++++++++-----------------------------
 R/plots.R         |only
 README.md         |only
 data/M3.rda       |binary
 man/plot.Mdata.Rd |   15 +-
 9 files changed, 204 insertions(+), 202 deletions(-)

More information about Mcomp at CRAN
Permanent link

Package maptools updated to version 0.9-1 with previous version 0.8-41 dated 2017-01-09

Title: Tools for Reading and Handling Spatial Objects
Description: Set of tools for manipulating and reading geographic data, in particular 'ESRI Shapefiles'; C code used from 'shapelib'. It includes binary access to 'GSHHG' shoreline files. The package also provides interface wrappers for exchanging spatial objects with packages such as 'PBSmapping', 'spatstat', 'maps', 'RArcInfo', 'Stata tmap', 'WinBUGS', 'Mondrian', and others.
Author: Roger Bivand [cre, aut], Nicholas Lewin-Koh [aut], Edzer Pebesma [ctb], Eric Archer [ctb], Adrian Baddeley [ctb], Nick Bearman [ctb], Hans-Jörg Bibiko [ctb], Steven Brey [ctb], Jonathan Callahan [ctb], German Carrillo [ctb], Stéphane Dray [ctb], David Forrest [ctb], Michael Friendly [ctb], Patrick Giraudoux [ctb], Duncan Golicher [ctb], Virgilio Gómez Rubio [ctb], Patrick Hausmann [ctb], Karl Ove Hufthammer [ctb], Thomas Jagger [ctb], Kent Johnson [ctb], Sebastian Luque [ctb], Don MacQueen [ctb], Andrew Niccolai [ctb], Edzer Pebesma [ctb], Oscar Perpiñán Lamigueiro [ctb], Tom Short [ctb], Greg Snow [ctb], Ben Stabler [ctb], Murray Stokely [ctb], Rolf Turner [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>

Diff between maptools versions 0.8-41 dated 2017-01-09 and 0.9-1 dated 2017-02-23

 ChangeLog                     |  857 ++++++++++++++++++++++++++++++++++++++++++
 DESCRIPTION                   |    8 
 MD5                           |   33 -
 R/Spatial-methods.R           |    2 
 R/SpatialLines-methods.R      |    2 
 R/SpatialPoints-methods.R     |    2 
 R/SpatialPolys-methods.R      |    2 
 inst/ChangeLog                |  857 ++++++++++++++++++++++++++++++++++++++++++
 inst/doc/combine_maptools.pdf |binary
 man/gcDestination.Rd          |    2 
 man/readShapeLines.Rd         |    3 
 man/readShapePoints.Rd        |    3 
 man/readShapePoly.Rd          |    3 
 man/readShapeSpatial.Rd       |    3 
 src/Rcentroid.c               |    2 
 src/Rgshhs.c                  |    3 
 src/init.c                    |only
 src/maptools.h                |   17 
 18 files changed, 1764 insertions(+), 35 deletions(-)

More information about maptools at CRAN
Permanent link

Package lintools updated to version 0.1.1.3 with previous version 0.1.1.1 dated 2016-03-04

Title: Manipulation of Linear Systems of (in)Equalities
Description: Variable elimination (Gaussian elimination, Fourier-Motzkin elimination), Moore-Penrose pseudoinverse, reduction to reduced row echelon form, value substitution, projecting a vector on the convex polytope described by a system of (in)equations, simplify systems by removing spurious columns and rows and collapse implied equalities, test if a matrix is totally unimodular, compute variable ranges implied by linear (in)equalities.
Author: Mark van der Loo [aut, cre], Edwin de Jonge [aut]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>

Diff between lintools versions 0.1.1.1 dated 2016-03-04 and 0.1.1.3 dated 2017-02-23

 DESCRIPTION                  |   10 ++--
 MD5                          |   23 +++++----
 NAMESPACE                    |    2 
 NEWS                         |    6 ++
 R/compact.R                  |    9 ++-
 R/lintools-pkg.R             |    3 -
 R/ranges.R                   |    2 
 build/vignette.rds           |binary
 inst/doc/project.Rmd         |    2 
 inst/doc/project.html        |  101 +++++++++++++++++++++++++------------------
 src/R_register_native.c      |only
 tests/testthat/test_ranges.R |   20 ++++++++
 vignettes/project.Rmd        |    2 
 13 files changed, 111 insertions(+), 69 deletions(-)

More information about lintools at CRAN
Permanent link

Package jug updated to version 0.1.6 with previous version 0.1.4 dated 2016-09-15

Title: A Simple Web Framework for R
Description: A set of functions to ease the building of web APIs.
Author: Bart Smeets [aut, cre]
Maintainer: Bart Smeets <bartsmeets86@gmail.com>

Diff between jug versions 0.1.4 dated 2016-09-15 and 0.1.6 dated 2017-02-23

 DESCRIPTION                      |    8 +--
 MD5                              |   80 ++++++++++++++++++++-------------------
 NAMESPACE                        |    2 
 R/decorators.R                   |   15 ++++++-
 R/helpers.R                      |    5 ++
 R/jug.R                          |    2 
 R/middleware_auth.R              |only
 R/response.R                     |    4 -
 build/vignette.rds               |binary
 inst/doc/jug.R                   |   28 +++++++++++++
 inst/doc/jug.Rmd                 |   47 ++++++++++++++++++++--
 inst/doc/jug.html                |   41 ++++++++++++++++---
 man/Error.Rd                     |    1 
 man/Jug.Rd                       |    1 
 man/Middleware.Rd                |    1 
 man/MiddlewareHandler.Rd         |    1 
 man/RawTestRequest.Rd            |    1 
 man/Request.Rd                   |    1 
 man/Response.Rd                  |    1 
 man/add_middleware.Rd            |    1 
 man/auth_basic.Rd                |only
 man/collector.Rd                 |    1 
 man/cors.Rd                      |    1 
 man/decorate.Rd                  |    5 +-
 man/delete.Rd                    |    1 
 man/get.Rd                       |    2 
 man/include.Rd                   |    1 
 man/match_path.Rd                |    1 
 man/new_error.Rd                 |    1 
 man/parse_params.Rd              |    1 
 man/post.Rd                      |    1 
 man/process_test_request.Rd      |    1 
 man/put.Rd                       |    1 
 man/reexports.Rd                 |only
 man/serve_it.Rd                  |    1 
 man/serve_static_files.Rd        |    1 
 man/simple_error_handler.Rd      |    1 
 man/simple_error_handler_json.Rd |    1 
 man/stop_daemon.Rd               |    1 
 man/use.Rd                       |    1 
 man/ws.Rd                        |    1 
 tests/testthat/test_auth.R       |only
 vignettes/jug.Rmd                |   47 ++++++++++++++++++++--
 43 files changed, 222 insertions(+), 89 deletions(-)

More information about jug at CRAN
Permanent link

New package ImputeRobust with initial version 1.1-0
Package: ImputeRobust
Type: Package
Title: Robust Multiple Imputation with Generalized Additive Models for Location Scale and Shape
Version: 1.1-0
Date: 2017-02-23
Authors@R: c(person("Daniel", "Salfran", email = "daniel.salfran@uni-hamburg.de", role = c("aut", "cre")), person("Martin", "Spiess", email = "martin.spiess@uni-hamburg.de", role = c("aut", "ths")))
Description: Provides new imputation methods for the 'mice' package based on generalized additive models for location, scale, and shape (GAMLSS) as described in de Jong, van Buuren and Spiess <doi:10.1080/03610918.2014.911894>.
Maintainer: Daniel Salfran <daniel.salfran@uni-hamburg.de>
Depends: gamlss, mice, R (>= 3.2.0)
Imports: purrr, extremevalues, gamlss.dist, lattice
License: GPL-3
LazyData: true
RoxygenNote: 5.0.1
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2017-02-23 10:53:17 UTC; daniel
Author: Daniel Salfran [aut, cre], Martin Spiess [aut, ths]
Repository: CRAN
Date/Publication: 2017-02-23 17:30:55

More information about ImputeRobust at CRAN
Permanent link

Package GsymPoint updated to version 1.1.1 with previous version 1.1 dated 2017-02-08

Title: Estimation of the Generalized Symmetry Point, an Optimal Cutpoint in Continuous Diagnostic Tests
Description: Estimation of the cutpoint defined by the Generalized Symmetry point in a binary classification setting based on a continuous diagnostic test or marker. Two methods have been implemented to construct confidence intervals for this optimal cutpoint, one based on the Generalized Pivotal Quantity and the other based on Empirical Likelihood. Numerical and graphical outputs for these two methods are easily obtained.
Author: Mónica López-Ratón [aut, cre], Carmen Cadarso-Suárez [aut], Elisa M. Molanes-López [aut], Emilio Letón [aut]
Maintainer: Mónica López-Ratón <monica.lopez.raton@gmail.com>

Diff between GsymPoint versions 1.1 dated 2017-02-08 and 1.1.1 dated 2017-02-23

 DESCRIPTION               |   20 ++++++++---
 MD5                       |   16 ++++-----
 NAMESPACE                 |    5 --
 inst/CITATION             |   37 ++++++++-------------
 inst/NEWS                 |   80 ++++++++++++++++++++--------------------------
 man/GsymPoint-package.Rd  |    4 +-
 man/control.gsym.point.Rd |    2 -
 tests/testthat.R          |    2 -
 tests/testthat/test-auc.R |   11 ------
 9 files changed, 78 insertions(+), 99 deletions(-)

More information about GsymPoint at CRAN
Permanent link

New package filesstrings with initial version 0.3.1
Package: filesstrings
Type: Package
Title: Handy String and File Manipulation
Version: 0.3.1
Authors@R: person("Rory", "Nolan", email = "rorynoolan@gmail.com", role = c("aut", "cre"))
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Description: Handy string and file processing and manipulation tools. Built on top of the functionality of base and 'stringr'. Good for those who like to do all of their file and string manipulation from within R.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: readr, tibble, Rcpp, magrittr, tools, dplyr, ore, matrixStats
RoxygenNote: 6.0.1
Suggests: testthat, covr, knitr, rmarkdown
LinkingTo: Rcpp
Depends: stringr
URL: https://www.github.com/rorynolan/filesstrings
BugReports: https://www.github.com/rorynolan/filesstrings/issues
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2017-02-23 12:05:42 UTC; rnolan
Author: Rory Nolan [aut, cre]
Repository: CRAN
Date/Publication: 2017-02-23 17:31:03

More information about filesstrings at CRAN
Permanent link

New package EnviroPRA with initial version 1.0
Package: EnviroPRA
Type: Package
Title: Environmental Probabilistic Risk Assessment Tools
Version: 1.0
Date: 2017-02-22
Author: F. Barrio-Parra, with contributions from A. Dominguez-Castillo.
Maintainer: Fernando Barrio-Parra <fernando.barrio@upm.es>
Description: Methods to perform a Probabilistic Environmental Risk assessment from exposure to toxic substances - i.e. USEPA (1997) <https://www.epa.gov/risk/guiding-principles-monte-carlo-analysis> -.
License: GPL
Imports: MASS, kSamples, stats, fitdistrplus, truncdist
NeedsCompilation: no
Packaged: 2017-02-23 11:05:18 UTC; Fernando Barrio
Repository: CRAN
Date/Publication: 2017-02-23 17:30:51

More information about EnviroPRA at CRAN
Permanent link

Package CopulaDTA updated to version 0.0.5 with previous version 0.0.4 dated 2016-08-08

Title: Copula Based Bivariate Beta-Binomial Model for Diagnostic Test Accuracy Studies
Description: Modelling of sensitivity and specificity on their natural scale using copula based bivariate beta-binomial distribution to yield marginal mean sensitivity and specificity. The intrinsic negative correlation between sensitivity and specificity is modelled using a copula function. A forest plot can be obtained for categorical covariates or for the model with intercept only.
Author: Victoria N Nyaga [aut, cre]
Maintainer: Victoria N Nyaga <victoria.nyaga@outlook.com>

Diff between CopulaDTA versions 0.0.4 dated 2016-08-08 and 0.0.5 dated 2017-02-23

 DESCRIPTION                      |   24 +-
 MD5                              |   54 ++---
 R/plot.R                         |   24 +-
 R/traceplot.R                    |    7 
 build/vignette.rds               |binary
 inst/CITATION                    |    8 
 inst/doc/CopulaDTA_Vignette.R    |  209 ++++++++++---------
 inst/doc/CopulaDTA_Vignette.Rmd  |  232 +++++++++++----------
 inst/doc/CopulaDTA_Vignette.html |  419 +++++++++++++++++++++------------------
 man/ascus.Rd                     |   53 ++--
 man/cdtafit-class.Rd             |    8 
 man/cdtamodel-class.Rd           |    8 
 man/cdtamodel.Rd                 |    7 
 man/fit.Rd                       |    1 
 man/fit.cdtamodel.Rd             |    7 
 man/forestplot.cdtafit.Rd        |    7 
 man/ft.Rd                        |   37 +--
 man/plot.Rd                      |    1 
 man/prep.data.Rd                 |    1 
 man/print.cdtafit.Rd             |    7 
 man/show.Rd                      |    3 
 man/summary.cdtafit.Rd           |    7 
 man/telomerase.Rd                |   51 ++--
 man/traceplot.Rd                 |    1 
 man/traceplot.cdtafit.Rd         |    1 
 man/waic.Rd                      |    1 
 vignettes/CopulaDTA_Vignette.Rmd |   17 +
 vignettes/References.bib         |   22 +-
 28 files changed, 653 insertions(+), 564 deletions(-)

More information about CopulaDTA at CRAN
Permanent link

Package sdcTable updated to version 0.22.1 with previous version 0.21.6 dated 2016-08-22

Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in tabular data such as primary and secondary cell suppression are covered in this package.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl <bernhard.meindl@statistik.gv.at>

Diff between sdcTable versions 0.21.6 dated 2016-08-22 and 0.22.1 dated 2017-02-23

 DESCRIPTION                        |   10 -
 MD5                                |  139 ++++++++++++------------
 NAMESPACE                          |    5 
 R/RcppExports.R                    |    2 
 R/classes.r                        |    4 
 R/classes_tauBatch.r               |only
 R/export_functions.r               |  212 ++++++++++++++++++++++++++++++++++++-
 R/helper_functions.r               |   86 +++++++++++++--
 R/methods_class_sdcProblem.r       |   27 +++-
 R/tauBatch_helpers.R               |only
 R/zzz.r                            |    1 
 build/vignette.rds                 |binary
 inst/doc/sdcTable.pdf              |binary
 man/attack.Rd                      |    1 
 man/calc.cutList-method.Rd         |    1 
 man/calc.dimVar-method.Rd          |    1 
 man/calc.linProb-method.Rd         |    1 
 man/calc.multiple-method.Rd        |    4 
 man/calc.problemInstance-method.Rd |    4 
 man/calc.sdcProblem-method.Rd      |    4 
 man/calc.simpleTriplet-method.Rd   |    4 
 man/cellInfo.Rd                    |    1 
 man/changeCellStatus.Rd            |    1 
 man/createArgusInput.Rd            |only
 man/cutList-class.Rd               |    1 
 man/dataObj-class.Rd               |    1 
 man/dimInfo-class.Rd               |    1 
 man/dimVar-class.Rd                |    1 
 man/get.cutList-method.Rd          |    1 
 man/get.dataObj-method.Rd          |    1 
 man/get.dimInfo-method.Rd          |    1 
 man/get.dimVar-method.Rd           |    1 
 man/get.linProb-method.Rd          |    1 
 man/get.problemInstance-method.Rd  |    4 
 man/get.safeObj-method.Rd          |    1 
 man/get.sdcProblem-method.Rd       |    4 
 man/get.simpleTriplet-method.Rd    |    4 
 man/getInfo.Rd                     |    1 
 man/init.cutList-method.Rd         |    1 
 man/init.dataObj-method.Rd         |    1 
 man/init.dimVar-method.Rd          |    1 
 man/init.simpleTriplet-method.Rd   |    4 
 man/linProb-class.Rd               |    1 
 man/makeProblem.Rd                 |    7 -
 man/microData1.Rd                  |    1 
 man/microData2.Rd                  |    1 
 man/primarySuppression.Rd          |    1 
 man/print-method.Rd                |    1 
 man/print.sdcProblem-method.Rd     |    1 
 man/problem.Rd                     |    1 
 man/problemInstance-class.Rd       |    1 
 man/problemWithSupps.Rd            |    1 
 man/protectLinkedTables.Rd         |    7 -
 man/protectTable.Rd                |   10 +
 man/protectedData.Rd               |    1 
 man/runArgusBatchFile.Rd           |only
 man/safeObj-class.Rd               |    1 
 man/sdcProblem-class.Rd            |    1 
 man/set.cutList-method.Rd          |    1 
 man/set.dataObj-method.Rd          |    1 
 man/set.dimInfo-method.Rd          |    1 
 man/set.linProb-method.Rd          |    1 
 man/set.problemInstance-method.Rd  |    4 
 man/set.sdcProblem-method.Rd       |    4 
 man/setInfo.Rd                     |    1 
 man/show.safeObj-method.Rd         |    1 
 man/show.sdcProblem-method.Rd      |    1 
 man/simpleTriplet-class.Rd         |    1 
 man/summary.safeObj-method.Rd      |    1 
 man/summary.sdcProblem-method.Rd   |    1 
 src/RcppExports.cpp                |   34 ++---
 src/init.c                         |only
 src/suppMultDimTable.cpp           |   38 +++---
 73 files changed, 462 insertions(+), 202 deletions(-)

More information about sdcTable at CRAN
Permanent link

New package lsasim with initial version 1.0.0
Package: lsasim
Title: Simulate Large Scale Assessment Data
Version: 1.0.0
Authors@R: c( person("Tyler", "Matta", email = "tyler.matta@gmail.com", role = c("aut", "cre")), person("Yuan-Ling Linda", "Liaw", email = "linda08@uw.edu", role = "ctb"), person("Leslie", "Rutkowski", email = "leslie.rutkowski@cemo.uio.no", role = "ctb"), person("David", "Rutkowski", email = "david.rutkowski@cemo.uio.no", role = "ctb"), person("Kondwani Kajera", "Mughogho", email = "k.k.mughogho@cemo.uio.no", role = "ctb") )
BugReports: https://github.com/tmatta/lsasim/issues
Description: Provides functions to simulate data from large-scale educational assessments, including background questionnaire data and cognitive item responses that adhere to a multiple-matrix sampled design.
Depends: R (>= 3.3.1)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2017-02-23 07:23:47 UTC; tylerm
Author: Tyler Matta [aut, cre], Yuan-Ling Linda Liaw [ctb], Leslie Rutkowski [ctb], David Rutkowski [ctb], Kondwani Kajera Mughogho [ctb]
Maintainer: Tyler Matta <tyler.matta@gmail.com>
Repository: CRAN
Date/Publication: 2017-02-23 11:14:36

More information about lsasim at CRAN
Permanent link

New package fpp2 with initial version 2.0
Package: fpp2
Version: 2.0
Title: Data for "Forecasting: Principles and Practice" (2nd Ed)
Description: All data sets required for the examples and exercises in the book "Forecasting: principles and practice" by Rob J Hyndman and George Athanasopoulos. All packages required to run the examples are also loaded.
Depends: R (>= 2.0.0), forecast (>= 8.0), fma, expsmooth, ggplot2
LazyData: yes
LazyLoad: yes
Authors@R: c(person(given="Rob", family="Hyndman", role=c("aut", "cre", "cph"), email="Rob.Hyndman@monash.edu"))
License: GPL (>= 2)
URL: http://OTexts.org/fpp2/
NeedsCompilation: no
Packaged: 2017-02-23 09:05:02 UTC; robjhyndman
Author: Rob Hyndman [aut, cre, cph]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Repository: CRAN
Date/Publication: 2017-02-23 11:14:33

More information about fpp2 at CRAN
Permanent link

New package tuckerR.mmgg with initial version 1.5.0
Package: tuckerR.mmgg
Type: Package
Title: Three-Mode Principal Components Analysis
Version: 1.5.0
Authors@R: c( person("Marta","Marticorena",role = "aut"), person("Gustavo","Gimenez",email = "gustavo.gimenez@faea.uncoma.edu.ar",role="cre"), person("Cecilia","Gonzalez",role = "ctb"), person("Sergio","Bramardi",role = "aut"))
Maintainer: Gustavo Gimenez <gustavo.gimenez@faea.uncoma.edu.ar>
Description: Performs Three-Mode Principal Components Analysis, which carries out Tucker Models.
Depends: R (>= 3.3.0)
Suggests: knitr,testthat
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
URL: https://github.com/gusart/tuckerR_mmgg
BugReports: https://github.com/gusart/tuckerR_mmgg/issues
NeedsCompilation: no
Packaged: 2017-02-23 02:18:11 UTC; gusart
Author: Marta Marticorena [aut], Gustavo Gimenez [cre], Cecilia Gonzalez [ctb], Sergio Bramardi [aut]
Repository: CRAN
Date/Publication: 2017-02-23 08:31:38

More information about tuckerR.mmgg at CRAN
Permanent link

New package sppmix with initial version 1.0.0.0
Package: sppmix
Title: Modeling Spatial Poisson and Related Point Processes
Version: 1.0.0.0
Author: Jiaxun Chen <chenjiaxun9@hotmail.com> and Athanasios (Sakis) Christou Micheas <micheasa@missouri.edu>. Significant contributions on the package skeleton creation, plotting functions and other code by Yuchen Wang <ycwang0712@gmail.com>
Maintainer: Sakis Micheas <micheasa@missouri.edu>
Description: Implements classes and methods for modeling spatial point patterns using inhomogeneous Poisson point processes, where the intensity surface is assumed to be analogous to a finite additive mixture of normal components and the number of components is a finite, fixed or random integer. Extensions to the marked inhomogeneous Poisson point processes case are also presented. We provide an extensive suite of R functions that can be used to simulate, visualize and model point patterns, estimate the parameters of the models, assess convergence of the algorithms and perform model selection and checking in the proposed modeling context.
Depends: R (>= 3.2.1), stats, graphics, grDevices, utils, USAboundaries
License: CC BY-NC-SA 4.0
LazyData: true
Imports: Rcpp, spatstat, rgl, fields, mvtnorm, ggplot2 (>= 2.1.0), matrixcalc,sp
LinkingTo: Rcpp, RcppArmadillo, mvtnorm
URL: http://www.stat.missouri.edu/~amicheas/sppmix/index.html
RoxygenNote: 5.0.1
Suggests: knitr,rmarkdown
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2017-02-22 13:58:12 UTC; sakis
Repository: CRAN
Date/Publication: 2017-02-23 08:31:33

More information about sppmix at CRAN
Permanent link

New package robustarima with initial version 0.2.5
Package: robustarima
Type: Package
Title: Robust ARIMA Modeling
Imports: methods, splusTimeDate, splusTimeSeries
Version: 0.2.5
Author: TIBCO Software Inc.
Maintainer: Stephen Kaluzny <skaluzny@tibco.com>
Description: Functions for fitting a linear regression model with ARIMA errors using a filtered tau-estimate.
License: BSD_3_clause + file LICENSE
Encoding: UTF-8
LazyData: true
NeedsCompilation: yes
Packaged: 2017-02-22 18:26:02 UTC; spk
Repository: CRAN
Date/Publication: 2017-02-23 08:31:31

More information about robustarima at CRAN
Permanent link

Package rNOMADS updated to version 2.3.3 with previous version 2.3.2 dated 2016-12-31

Title: An Interface to the NOAA Operational Model Archive and Distribution System
Description: An interface to the National Oceanic and Atmospheric Administration's Operational Model Archive and Distribution System (NOMADS, see <http://nomads.ncep.noaa.gov/> for more information) that allows R users to quickly and efficiently download global and regional weather model data for processing. rNOMADS currently supports a variety of models ranging from global weather data to an altitude of 40 km, to high resolution regional weather models, to wave and sea ice models. It can also retrieve archived NOMADS models. rNOMADS can retrieve binary data in grib format as well as import ascii data directly into R by interfacing with the GrADS-DODS system.
Author: Daniel C. Bowman [aut, cre]
Maintainer: Daniel C. Bowman <danny.c.bowman@gmail.com>

Diff between rNOMADS versions 2.3.2 dated 2016-12-31 and 2.3.3 dated 2017-02-23

 DESCRIPTION |   10 +++++-----
 MD5         |    8 ++++----
 NEWS        |    4 ++++
 R/GetDODS.R |    2 +-
 R/Models.R  |   12 ++++++------
 5 files changed, 20 insertions(+), 16 deletions(-)

More information about rNOMADS at CRAN
Permanent link

New package prefeR with initial version 0.1.1
Package: prefeR
Type: Package
Title: R Package for Pairwise Preference Elicitation
Version: 0.1.1
Date: 2017-02-22
Author: John Lepird
Maintainer: John Lepird <jlepird@alum.mit.edu>
Description: Allows users to derive multi-objective weights from pairwise comparisons, which research shows is more repeatable, transparent, and intuitive other techniques. These weights can be rank existing alternatives or to define a multi-objective utility function for optimization.
License: MIT + file LICENSE
Imports: mcmc, methods, entropy
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 6.0.1
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2017-02-22 23:29:46 UTC; jack
Repository: CRAN
Date/Publication: 2017-02-23 08:31:27

More information about prefeR at CRAN
Permanent link

New package neighbr with initial version 1.0
Package: neighbr
Title: Classification, Regression, Clustering with K Nearest Neighbors
Version: 1.0
Authors@R: c( person("Dmitriy", "Bolotov", email = "dmitriy.bolotov@softwareag.com", role = c("aut", "cre")), person("Zementis Inc",role="cph") )
Description: Classification, regression, and clustering with k nearest neighbors algorithm. Implements several distance and similarity measures, covering continuous and logical features. Outputs ranked neighbors. Most features of this package are directly based on the PMML specification for KNN.
Depends: R (>= 3.3.0)
License: GPL (>= 2.1)
Encoding: UTF-8
LazyData: true
Suggests: testthat, knitr, rmarkdown, mlbench
RoxygenNote: 6.0.0
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-02-22 22:44:04 UTC; dmitriy
Author: Dmitriy Bolotov [aut, cre], Zementis Inc [cph]
Maintainer: Dmitriy Bolotov <dmitriy.bolotov@softwareag.com>
Repository: CRAN
Date/Publication: 2017-02-23 08:31:25

More information about neighbr at CRAN
Permanent link

Package naptime updated to version 1.3.0 with previous version 1.2.2 dated 2017-02-09

Title: A Flexible and Robust Sys.sleep() Replacement
Description: Provides a near drop-in replacement for base::Sys.sleep() that allows more types of input to produce delays in the execution of code and can silence/prevent typical sources of error.
Author: Russell S. Pierce [aut, cre], Timothy Gann [aut]
Maintainer: Russell S. Pierce <russell.s.pierce@gmail.com>

Diff between naptime versions 1.2.2 dated 2017-02-09 and 1.3.0 dated 2017-02-23

 naptime-1.2.2/naptime/ChangeLog                     |only
 naptime-1.2.2/naptime/inst/doc/naptime.R            |only
 naptime-1.2.2/naptime/inst/doc/naptime.Rmd          |only
 naptime-1.2.2/naptime/inst/doc/naptime.html         |only
 naptime-1.2.2/naptime/vignettes/naptime.Rmd         |only
 naptime-1.3.0/naptime/DESCRIPTION                   |   14 ++---
 naptime-1.3.0/naptime/MD5                           |   27 +++++------
 naptime-1.3.0/naptime/NAMESPACE                     |    2 
 naptime-1.3.0/naptime/NEWS.md                       |   13 +++++
 naptime-1.3.0/naptime/R/naptime.R                   |   46 ++++++++++++-------
 naptime-1.3.0/naptime/README.md                     |   15 ------
 naptime-1.3.0/naptime/build/vignette.rds            |binary
 naptime-1.3.0/naptime/inst/doc/WhyAndHowToNap.R     |only
 naptime-1.3.0/naptime/inst/doc/WhyAndHowToNap.Rmd   |only
 naptime-1.3.0/naptime/inst/doc/WhyAndHowToNap.html  |only
 naptime-1.3.0/naptime/man/naptime.Rd                |   11 ++--
 naptime-1.3.0/naptime/tests/testthat.R              |    1 
 naptime-1.3.0/naptime/tests/testthat/test-naptime.R |   47 +++++++++++++++-----
 naptime-1.3.0/naptime/vignettes/WhyAndHowToNap.Rmd  |only
 19 files changed, 107 insertions(+), 69 deletions(-)

More information about naptime at CRAN
Permanent link

Package forecast updated to version 8.0 with previous version 7.3 dated 2016-10-12

Title: Forecasting Functions for Time Series and Linear Models
Description: Methods and tools for displaying and analysing univariate time series forecasts including exponential smoothing via state space models and automatic ARIMA modelling.
Author: Rob Hyndman [aut, cre, cph], Mitchell O'Hara-Wild [aut], Christoph Bergmeir [aut], Slava Razbash [aut], Earo Wang [aut]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>

Diff between forecast versions 7.3 dated 2016-10-12 and 8.0 dated 2017-02-23

 forecast-7.3/forecast/man/arima.errors.Rd             |only
 forecast-7.3/forecast/man/autoplot.decomposed.ts.Rd   |only
 forecast-7.3/forecast/man/autoplot.stl.Rd             |only
 forecast-7.3/forecast/man/fitted.bats.Rd              |only
 forecast-7.3/forecast/man/fitted.ets.Rd               |only
 forecast-7.3/forecast/man/fitted.nnetar.Rd            |only
 forecast-7.3/forecast/man/fitted.tbats.Rd             |only
 forecast-7.3/forecast/man/fortify.forecast.Rd         |only
 forecast-7.3/forecast/man/logLikets.Rd                |only
 forecast-7.3/forecast/tests/testthat/Rplots.pdf       |only
 forecast-8.0/forecast/ChangeLog                       |   25 
 forecast-8.0/forecast/DESCRIPTION                     |   31 
 forecast-8.0/forecast/MD5                             |  205 +--
 forecast-8.0/forecast/NAMESPACE                       |   74 -
 forecast-8.0/forecast/R/HoltWintersNew.R              |   34 
 forecast-8.0/forecast/R/acf.R                         |   39 
 forecast-8.0/forecast/R/arfima.R                      |  165 +-
 forecast-8.0/forecast/R/arima.R                       |  112 -
 forecast-8.0/forecast/R/attach.R                      |   15 
 forecast-8.0/forecast/R/baggedETS.R                   |only
 forecast-8.0/forecast/R/bats.R                        |   28 
 forecast-8.0/forecast/R/bootstrap.R                   |   53 
 forecast-8.0/forecast/R/calendar.R                    |   11 
 forecast-8.0/forecast/R/checkresiduals.R              |only
 forecast-8.0/forecast/R/components.R                  |only
 forecast-8.0/forecast/R/dshw.r                        |    9 
 forecast-8.0/forecast/R/errors.R                      |   26 
 forecast-8.0/forecast/R/ets.R                         |   35 
 forecast-8.0/forecast/R/etsforecast.R                 |   36 
 forecast-8.0/forecast/R/fitBATS.R                     |   19 
 forecast-8.0/forecast/R/fitTBATS.R                    |   15 
 forecast-8.0/forecast/R/forecast.R                    |  111 +
 forecast-8.0/forecast/R/forecast.varest.R             |   45 
 forecast-8.0/forecast/R/forecast2.R                   |  101 -
 forecast-8.0/forecast/R/forecastBATS.R                |   58 
 forecast-8.0/forecast/R/forecastTBATS.R               |   51 
 forecast-8.0/forecast/R/getResponse.R                 |    7 
 forecast-8.0/forecast/R/ggplot.R                      | 1180 +++++++++++++-----
 forecast-8.0/forecast/R/graph.R                       |    6 
 forecast-8.0/forecast/R/lm.R                          |   66 -
 forecast-8.0/forecast/R/mforecast.R                   |  126 -
 forecast-8.0/forecast/R/naive.R                       |   38 
 forecast-8.0/forecast/R/newarima2.R                   |  479 +++----
 forecast-8.0/forecast/R/nnetar.R                      |   26 
 forecast-8.0/forecast/R/residuals.R                   |only
 forecast-8.0/forecast/R/seasadj.R                     |   22 
 forecast-8.0/forecast/R/season.R                      |   99 -
 forecast-8.0/forecast/R/simulate.R                    |   39 
 forecast-8.0/forecast/R/spline.R                      |   11 
 forecast-8.0/forecast/R/subset.R                      |   47 
 forecast-8.0/forecast/R/tbats.R                       |   45 
 forecast-8.0/forecast/R/theta.R                       |    6 
 forecast-8.0/forecast/R/tscv.R                        |only
 forecast-8.0/forecast/README.md                       |   60 
 forecast-8.0/forecast/build                           |only
 forecast-8.0/forecast/inst/doc                        |only
 forecast-8.0/forecast/man/Acf.Rd                      |   11 
 forecast-8.0/forecast/man/BoxCox.Rd                   |    6 
 forecast-8.0/forecast/man/CVar.Rd                     |only
 forecast-8.0/forecast/man/arfima.Rd                   |    4 
 forecast-8.0/forecast/man/arima.Rd                    |    5 
 forecast-8.0/forecast/man/autolayer.Rd                |only
 forecast-8.0/forecast/man/autoplot.acf.Rd             |    7 
 forecast-8.0/forecast/man/autoplot.seas.Rd            |only
 forecast-8.0/forecast/man/autoplot.ts.Rd              |   14 
 forecast-8.0/forecast/man/baggedETS.Rd                |only
 forecast-8.0/forecast/man/bats.Rd                     |    3 
 forecast-8.0/forecast/man/bld.mbb.bootstrap.Rd        |only
 forecast-8.0/forecast/man/checkresiduals.Rd           |only
 forecast-8.0/forecast/man/components.Rd               |only
 forecast-8.0/forecast/man/dshw.Rd                     |    4 
 forecast-8.0/forecast/man/fitted.Arima.Rd             |   29 
 forecast-8.0/forecast/man/forecast.Arima.Rd           |    6 
 forecast-8.0/forecast/man/forecast.HoltWinters.Rd     |    4 
 forecast-8.0/forecast/man/forecast.Rd                 |   26 
 forecast-8.0/forecast/man/forecast.StructTS.Rd        |    2 
 forecast-8.0/forecast/man/forecast.baggedETS.Rd       |only
 forecast-8.0/forecast/man/forecast.bats.Rd            |    4 
 forecast-8.0/forecast/man/forecast.ets.Rd             |    4 
 forecast-8.0/forecast/man/forecast.lm.Rd              |    2 
 forecast-8.0/forecast/man/forecast.mlm.Rd             |    2 
 forecast-8.0/forecast/man/forecast.stl.Rd             |   10 
 forecast-8.0/forecast/man/forecastplot.Rd             |   18 
 forecast-8.0/forecast/man/fourier.Rd                  |only
 forecast-8.0/forecast/man/geom_forecast.Rd            |   19 
 forecast-8.0/forecast/man/gghistogram.Rd              |only
 forecast-8.0/forecast/man/gglagplot.Rd                |   17 
 forecast-8.0/forecast/man/ggmonthplot.Rd              |   17 
 forecast-8.0/forecast/man/is.model.Rd                 |    4 
 forecast-8.0/forecast/man/plot.Arima.Rd               |    2 
 forecast-8.0/forecast/man/plot.ets.Rd                 |    3 
 forecast-8.0/forecast/man/plot.mforecast.Rd           |   12 
 forecast-8.0/forecast/man/reexports.Rd                |only
 forecast-8.0/forecast/man/residuals.Rd                |only
 forecast-8.0/forecast/man/seasonal.dummy.Rd           |   29 
 forecast-8.0/forecast/man/seasonplot.Rd               |    9 
 forecast-8.0/forecast/man/ses.Rd                      |   17 
 forecast-8.0/forecast/man/simulate.Rd                 |   19 
 forecast-8.0/forecast/man/subsetts.Rd                 |   12 
 forecast-8.0/forecast/man/tbats.Rd                    |    3 
 forecast-8.0/forecast/man/ts.display.Rd               |   13 
 forecast-8.0/forecast/man/tsclean.Rd                  |    3 
 forecast-8.0/forecast/man/tscv.Rd                     |only
 forecast-8.0/forecast/src/registerDynamicSymbol.c     |only
 forecast-8.0/forecast/tests/testthat/test-accuracy.R  |    8 
 forecast-8.0/forecast/tests/testthat/test-arima.R     |   13 
 forecast-8.0/forecast/tests/testthat/test-armaroots.R |    7 
 forecast-8.0/forecast/tests/testthat/test-bats.R      |   18 
 forecast-8.0/forecast/tests/testthat/test-biasadj.R   |only
 forecast-8.0/forecast/tests/testthat/test-dshw.R      |   20 
 forecast-8.0/forecast/tests/testthat/test-forecast.R  |    2 
 forecast-8.0/forecast/tests/testthat/test-ggplot.R    |only
 forecast-8.0/forecast/tests/testthat/test-graph.R     |    2 
 forecast-8.0/forecast/tests/testthat/test-hfitted.R   |   47 
 forecast-8.0/forecast/tests/testthat/test-mforecast.R |    6 
 forecast-8.0/forecast/tests/testthat/test-nnetar.R    |   11 
 forecast-8.0/forecast/tests/testthat/test-refit.R     |only
 forecast-8.0/forecast/tests/testthat/test-tbats.R     |    4 
 forecast-8.0/forecast/vignettes                       |only
 119 files changed, 2513 insertions(+), 1520 deletions(-)

More information about forecast at CRAN
Permanent link

New package extdplyr with initial version 0.1.3
Package: extdplyr
Type: Package
Title: Data Manipulation Extension Based on 'Dplyr' and 'Tidyr'
Version: 0.1.3
Authors@R: person("Yuchen", "Wang", email = "ycwang0712@gmail.com", role = c("aut", "cre"))
Description: If 'dplyr' is a grammar for data manipulation, 'extdplyr' is like a short paragraph written in 'dplyr'. 'extdplyr' extends 'dplyr' and 'tidyr' verbs to some common "routines" that manipulate data sets. It uses the same interface and preserves all the features from 'dplyr', has good performance, and supports various data sources.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: dplyr, tidyr, lazyeval
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-02-22 19:00:42 UTC; Yuchen
Author: Yuchen Wang [aut, cre]
Maintainer: Yuchen Wang <ycwang0712@gmail.com>
Repository: CRAN
Date/Publication: 2017-02-23 08:31:17

More information about extdplyr at CRAN
Permanent link

Package europepmc updated to version 0.1.3 with previous version 0.1.2 dated 2017-01-08

Title: R Interface to the Europe PubMed Central RESTful Web Service
Description: An R Client for the Europe PubMed Central RESTful Web Service (see <https://europepmc.org/RestfulWebService> for more information). It gives access to both metadata on life science literature and open access full texts. Europe PMC indexes all PubMed content and other literature sources including Agricola, a bibliographic database of citations to the agricultural literature, or Biological Patents. In addition to bibliographic metadata, the client allows users to fetch citations and reference lists. Links between life-science literature and other EBI databases, including ENA, PDB or ChEMBL are also accessible. No registration or API key is required. See the vignettes for usage examples.
Author: Najko Jahn [aut, cre, cph]
Maintainer: Najko Jahn <najko.jahn@gmail.com>

Diff between europepmc versions 0.1.2 dated 2017-01-08 and 0.1.3 dated 2017-02-23

 DESCRIPTION                         |   10 +-
 MD5                                 |   26 ++---
 NAMESPACE                           |    1 
 NEWS.md                             |   10 +-
 R/epmc_db.r                         |    6 +
 R/europepmc.r                       |    2 
 R/utils.r                           |    9 +
 README.md                           |  178 ++++++++++++++++++-----------------
 inst/doc/introducing-europepmc.Rmd  |    2 
 inst/doc/introducing-europepmc.html |  180 ++++++++++++++++++------------------
 man/epmc_db.Rd                      |    3 
 tests/testthat/test_epmc_db.r       |    6 +
 tests/testthat/test_epmc_db_count.r |    3 
 vignettes/introducing-europepmc.Rmd |    2 
 14 files changed, 235 insertions(+), 203 deletions(-)

More information about europepmc at CRAN
Permanent link

Package equSA updated to version 1.0.1 with previous version 1.0.0 dated 2017-02-22

Title: Estimate a Single or Multiple Graphical Models and Construct Networks
Description: Provides an equivalent measure of partial correlation coefficients for high-dimensional Gaussian Graphical Models to learn and visualize the underlying relationships between variables from single or multiple datasets. You can refer to Liang, F., Song, Q. and Qiu, P. (2015) <doi:10.1080/01621459.2015.1012391> for more detail. Based on this method, the package also provides the method for constructing networks for Next Generation Sequencing Data. Besides, it includes the method for jointly estimating Gaussian Graphical Models of multiple datasets.
Author: Bochao Jia, Faming Liang, Runmin Shi, Suwa Xu
Maintainer: Bochao Jia <jbc409@ufl.edu>

Diff between equSA versions 1.0.0 dated 2017-02-22 and 1.0.1 dated 2017-02-23

 DESCRIPTION          |    8 ++++----
 MD5                  |    6 +++---
 man/equSA-package.Rd |    6 +++---
 src/equSA.c          |   13 +++++--------
 4 files changed, 15 insertions(+), 18 deletions(-)

More information about equSA at CRAN
Permanent link

Package diveMove updated to version 1.4.2 with previous version 1.4.1 dated 2016-02-06

Title: Dive Analysis and Calibration
Description: Utilities to represent, visualize, filter, analyse, and summarize time-depth recorder (TDR) data. Miscellaneous functions for handling location data are also provided.
Author: Sebastian P. Luque <spluque@gmail.com>
Maintainer: Sebastian P. Luque <spluque@gmail.com>

Diff between diveMove versions 1.4.1 dated 2016-02-06 and 1.4.2 dated 2017-02-23

 DESCRIPTION                   |   11 -
 MD5                           |   72 +++++------
 NAMESPACE                     |    4 
 NEWS                          |   17 ++
 R/AllClass.R                  |   26 ++--
 R/AllMethod.R                 |   55 ++++++--
 R/bouts.R                     |    2 
 R/calibrate.R                 |   17 +-
 R/detDive.R                   |   82 ++++++++++---
 R/distSpeed.R                 |    5 
 R/zoc.R                       |    5 
 README.md                     |    2 
 build/vignette.rds            |binary
 inst/CITATION                 |    2 
 inst/doc/diveMove.R           |  257 +++++++++++++-----------------------------
 inst/doc/diveMove.Rnw         |  128 +++++++++++---------
 inst/doc/diveMove.pdf         |binary
 man/TDRcalibrate-accessors.Rd |    8 -
 man/bout-misc.Rd              |    3 
 man/bouts2MLE.Rd              |    3 
 man/bouts2NLS.Rd              |    3 
 man/bouts3NLS.Rd              |    3 
 man/calibrateDepth.Rd         |  115 +++++++++++++-----
 man/calibrateSpeed.Rd         |    3 
 man/detDive-internal.Rd       |    3 
 man/diveModel-class.Rd        |   43 ++++++-
 man/diveMove-internal.Rd      |    2 
 man/diveMove-package.Rd       |    5 
 man/diveStats.Rd              |    3 
 man/extractDive-methods.Rd    |    3 
 man/labDive-internal.Rd       |   12 +
 man/plotDiveModel-methods.Rd  |    5 
 man/plotTDR-methods.Rd        |    7 -
 man/plotZOC-methods.Rd        |    3 
 man/timeBudget-methods.Rd     |    3 
 tests/calibrations.R          |    5 
 vignettes/diveMove.Rnw        |  128 +++++++++++---------
 37 files changed, 598 insertions(+), 447 deletions(-)

More information about diveMove at CRAN
Permanent link

Package distcomp updated to version 0.25.6 with previous version 0.25.4 dated 2015-10-27

Title: Computations over Distributed Data without Aggregation
Description: Implementing algorithms and fitting models when sites (possibly remote) share computation summaries rather than actual data over HTTP with a master R process (using 'opencpu', for example). A stratified Cox model and a singular value decomposition are provided. The former makes direct use of code from the R 'survival' package. (That is, the underlying Cox model code is derived from that in the R 'survival' package.) Sites may provide data via several means: CSV files, Redcap API, etc. An extensible design allows for new methods to be added in the future. Web applications are provided (via 'shiny') for the implemented methods to help in designing and deploying the computations.
Author: Balasubramanian Narasimhan [aut, cre], Marina Bendersky [aut], Sam Gross [aut], Terry M. Therneau [ctb], Thomas Lumley [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>

Diff between distcomp versions 0.25.4 dated 2015-10-27 and 0.25.6 dated 2017-02-23

 distcomp-0.25.4/distcomp/man/CoxMaster.Rd |only
 distcomp-0.25.4/distcomp/man/SVDMaster.Rd |only
 distcomp-0.25.6/distcomp/DESCRIPTION      |    6 +++---
 distcomp-0.25.6/distcomp/MD5              |   12 ++++++------
 distcomp-0.25.6/distcomp/R/distcomp.R     |    4 +++-
 distcomp-0.25.6/distcomp/README.md        |    4 ++--
 distcomp-0.25.6/distcomp/man/coxMaster.Rd |only
 distcomp-0.25.6/distcomp/man/svdMaster.Rd |only
 distcomp-0.25.6/distcomp/src/init.c       |    2 +-
 9 files changed, 15 insertions(+), 13 deletions(-)

More information about distcomp at CRAN
Permanent link

Package crunch updated to version 1.15.0 with previous version 1.14.4 dated 2017-01-20

Title: Crunch.io Data Tools
Description: The Crunch.io service <http://crunch.io/> provides a cloud-based data store and analytic engine, as well as an intuitive web interface. Using this package, analysts can interact with and manipulate Crunch datasets from within R. Importantly, this allows technical researchers to collaborate naturally with team members, managers, and clients who prefer a point-and-click interface.
Author: Neal Richardson [aut, cre]
Maintainer: Neal Richardson <neal@crunch.io>

Diff between crunch versions 1.14.4 dated 2017-01-20 and 1.15.0 dated 2017-02-23

 crunch-1.14.4/crunch/man/filter-methods.Rd                          |only
 crunch-1.15.0/crunch/DESCRIPTION                                    |   12 
 crunch-1.15.0/crunch/MD5                                            |  363 +++++-----
 crunch-1.15.0/crunch/NAMESPACE                                      |    6 
 crunch-1.15.0/crunch/R/AllClasses.R                                 |    5 
 crunch-1.15.0/crunch/R/AllGenerics.R                                |    5 
 crunch-1.15.0/crunch/R/add-subvariable.R                            |    4 
 crunch-1.15.0/crunch/R/cube-query.R                                 |  165 ----
 crunch-1.15.0/crunch/R/cube-result.R                                |   61 +
 crunch-1.15.0/crunch/R/dataset-catalog.R                            |   19 
 crunch-1.15.0/crunch/R/export-dataset.R                             |    8 
 crunch-1.15.0/crunch/R/filters.R                                    |   31 
 crunch-1.15.0/crunch/R/formula.R                                    |only
 crunch-1.15.0/crunch/R/misc.R                                       |    8 
 crunch-1.15.0/crunch/R/multitables.R                                |only
 crunch-1.15.0/crunch/R/new-dataset.R                                |   11 
 crunch-1.15.0/crunch/R/projects.R                                   |   13 
 crunch-1.15.0/crunch/R/shoji-catalog.R                              |   27 
 crunch-1.15.0/crunch/R/subvariables.R                               |    3 
 crunch-1.15.0/crunch/R/tab-book.R                                   |only
 crunch-1.15.0/crunch/R/teams.R                                      |   15 
 crunch-1.15.0/crunch/R/variable-catalog.R                           |   18 
 crunch-1.15.0/crunch/R/variable-summary.R                           |    4 
 crunch-1.15.0/crunch/R/versions.R                                   |    6 
 crunch-1.15.0/crunch/R/zcl.R                                        |   17 
 crunch-1.15.0/crunch/man/Categories.Rd                              |   20 
 crunch-1.15.0/crunch/man/ContextManager.Rd                          |    1 
 crunch-1.15.0/crunch/man/CrunchDataset.Rd                           |    3 
 crunch-1.15.0/crunch/man/CrunchVariable.Rd                          |   20 
 crunch-1.15.0/crunch/man/DatasetOrder.Rd                            |    6 
 crunch-1.15.0/crunch/man/ShojiObject-class.Rd                       |    3 
 crunch-1.15.0/crunch/man/ShojiOrder-extract.Rd                      |   45 -
 crunch-1.15.0/crunch/man/ShojiOrder-length.Rd                       |    3 
 crunch-1.15.0/crunch/man/ShojiOrder-slots.Rd                        |   19 
 crunch-1.15.0/crunch/man/Subvariables.Rd                            |    6 
 crunch-1.15.0/crunch/man/VariableCatalog.Rd                         |    3 
 crunch-1.15.0/crunch/man/VariableDefinition.Rd                      |    3 
 crunch-1.15.0/crunch/man/VariableOrder.Rd                           |    6 
 crunch-1.15.0/crunch/man/addSubvariable.Rd                          |    1 
 crunch-1.15.0/crunch/man/addVariables.Rd                            |    1 
 crunch-1.15.0/crunch/man/appendDataset.Rd                           |    1 
 crunch-1.15.0/crunch/man/archive-and-publish.Rd                     |   31 
 crunch-1.15.0/crunch/man/as.environment-CrunchDataset-method.Rd     |    1 
 crunch-1.15.0/crunch/man/batches.Rd                                 |    1 
 crunch-1.15.0/crunch/man/c-categories.Rd                            |    1 
 crunch-1.15.0/crunch/man/catalog-extract.Rd                         |  108 +-
 crunch-1.15.0/crunch/man/catalog-length.Rd                          |    1 
 crunch-1.15.0/crunch/man/catalogToDataFrame.Rd                      |    1 
 crunch-1.15.0/crunch/man/category-extract.Rd                        |    3 
 crunch-1.15.0/crunch/man/checkForNewVersion.Rd                      |    1 
 crunch-1.15.0/crunch/man/cleanseBatches.Rd                          |    1 
 crunch-1.15.0/crunch/man/combine.Rd                                 |    1 
 crunch-1.15.0/crunch/man/compareDatasets.Rd                         |    1 
 crunch-1.15.0/crunch/man/consent.Rd                                 |    1 
 crunch-1.15.0/crunch/man/copyVariable.Rd                            |    3 
 crunch-1.15.0/crunch/man/createDataset.Rd                           |    1 
 crunch-1.15.0/crunch/man/createWithMetadataAndFile.Rd               |    1 
 crunch-1.15.0/crunch/man/crtabs.Rd                                  |    5 
 crunch-1.15.0/crunch/man/crunch-is.Rd                               |   19 
 crunch-1.15.0/crunch/man/crunch-summary.Rd                          |    1 
 crunch-1.15.0/crunch/man/crunch-uni.Rd                              |   21 
 crunch-1.15.0/crunch/man/crunch.Rd                                  |    1 
 crunch-1.15.0/crunch/man/crunchAPI.Rd                               |    1 
 crunch-1.15.0/crunch/man/crunchBox.Rd                               |    1 
 crunch-1.15.0/crunch/man/cube-computing.Rd                          |   39 -
 crunch-1.15.0/crunch/man/cube-methods.Rd                            |   11 
 crunch-1.15.0/crunch/man/dataset-extract.Rd                         |   15 
 crunch-1.15.0/crunch/man/dataset-owner.Rd                           |    3 
 crunch-1.15.0/crunch/man/dataset-to-R.Rd                            |    5 
 crunch-1.15.0/crunch/man/dataset-update.Rd                          |   18 
 crunch-1.15.0/crunch/man/dataset-variables.Rd                       |   11 
 crunch-1.15.0/crunch/man/datasets.Rd                                |    1 
 crunch-1.15.0/crunch/man/dedupeOrder.Rd                             |    1 
 crunch-1.15.0/crunch/man/delete.Rd                                  |    8 
 crunch-1.15.0/crunch/man/deleteDataset.Rd                           |    1 
 crunch-1.15.0/crunch/man/deleteSubvariables.Rd                      |    3 
 crunch-1.15.0/crunch/man/deleteVariables.Rd                         |    3 
 crunch-1.15.0/crunch/man/describe-catalog.Rd                        |   40 -
 crunch-1.15.0/crunch/man/describe-category.Rd                       |    9 
 crunch-1.15.0/crunch/man/describe.Rd                                |   49 -
 crunch-1.15.0/crunch/man/dichotomize.Rd                             |   17 
 crunch-1.15.0/crunch/man/dim-dataset.Rd                             |    3 
 crunch-1.15.0/crunch/man/dropRows.Rd                                |    1 
 crunch-1.15.0/crunch/man/duplicated.Rd                              |    3 
 crunch-1.15.0/crunch/man/embedCrunchBox.Rd                          |    1 
 crunch-1.15.0/crunch/man/exclusion.Rd                               |    1 
 crunch-1.15.0/crunch/man/exportDataset.Rd                           |    4 
 crunch-1.15.0/crunch/man/expressions.Rd                             |   19 
 crunch-1.15.0/crunch/man/filter-catalog.Rd                          |    3 
 crunch-1.15.0/crunch/man/flattenOrder.Rd                            |    1 
 crunch-1.15.0/crunch/man/flipArrays.Rd                              |    1 
 crunch-1.15.0/crunch/man/forkDataset.Rd                             |    1 
 crunch-1.15.0/crunch/man/getAccountUserCatalog.Rd                   |    1 
 crunch-1.15.0/crunch/man/getTeams.Rd                                |    1 
 crunch-1.15.0/crunch/man/grouped.Rd                                 |    1 
 crunch-1.15.0/crunch/man/handleAPIresponse.Rd                       |    1 
 crunch-1.15.0/crunch/man/hiddenVariables.Rd                         |    1 
 crunch-1.15.0/crunch/man/hide.Rd                                    |    3 
 crunch-1.15.0/crunch/man/hideVariables.Rd                           |    3 
 crunch-1.15.0/crunch/man/http-methods.Rd                            |    7 
 crunch-1.15.0/crunch/man/index.Rd                                   |    3 
 crunch-1.15.0/crunch/man/is-na-categories.Rd                        |    4 
 crunch-1.15.0/crunch/man/is-public.Rd                               |only
 crunch-1.15.0/crunch/man/is.editor.Rd                               |    5 
 crunch-1.15.0/crunch/man/joinDatasets.Rd                            |    3 
 crunch-1.15.0/crunch/man/listDatasets.Rd                            |    1 
 crunch-1.15.0/crunch/man/loadDataset.Rd                             |    1 
 crunch-1.15.0/crunch/man/locateEntity.Rd                            |    1 
 crunch-1.15.0/crunch/man/lock.Rd                                    |    1 
 crunch-1.15.0/crunch/man/login.Rd                                   |    1 
 crunch-1.15.0/crunch/man/logout.Rd                                  |    1 
 crunch-1.15.0/crunch/man/makeArray.Rd                               |    3 
 crunch-1.15.0/crunch/man/me.Rd                                      |    1 
 crunch-1.15.0/crunch/man/mergeFork.Rd                               |    1 
 crunch-1.15.0/crunch/man/moveToGroup.Rd                             |    1 
 crunch-1.15.0/crunch/man/multitable-catalog.Rd                      |only
 crunch-1.15.0/crunch/man/na-omit-categories.Rd                      |    1 
 crunch-1.15.0/crunch/man/newDataset.Rd                              |    1 
 crunch-1.15.0/crunch/man/newDatasetByCSV.Rd                         |    1 
 crunch-1.15.0/crunch/man/newDatasetByColumn.Rd                      |    1 
 crunch-1.15.0/crunch/man/newDatasetFromFile.Rd                      |    1 
 crunch-1.15.0/crunch/man/newFilter.Rd                               |    1 
 crunch-1.15.0/crunch/man/newMultitable.Rd                           |only
 crunch-1.15.0/crunch/man/newProject.Rd                              |    1 
 crunch-1.15.0/crunch/man/ordering.Rd                                |    9 
 crunch-1.15.0/crunch/man/owners.Rd                                  |    3 
 crunch-1.15.0/crunch/man/permissions.Rd                             |    1 
 crunch-1.15.0/crunch/man/preCrunchBoxCheck.Rd                       |    1 
 crunch-1.15.0/crunch/man/project-icon.Rd                            |    3 
 crunch-1.15.0/crunch/man/projects.Rd                                |    1 
 crunch-1.15.0/crunch/man/refresh.Rd                                 |    3 
 crunch-1.15.0/crunch/man/removeEmptyGroups.Rd                       |    1 
 crunch-1.15.0/crunch/man/restoreVersion.Rd                          |    1 
 crunch-1.15.0/crunch/man/saveVersion.Rd                             |    1 
 crunch-1.15.0/crunch/man/self.Rd                                    |    3 
 crunch-1.15.0/crunch/man/serialPaste.Rd                             |    1 
 crunch-1.15.0/crunch/man/session-extract.Rd                         |    7 
 crunch-1.15.0/crunch/man/session.Rd                                 |    1 
 crunch-1.15.0/crunch/man/session_store.Rd                           |    1 
 crunch-1.15.0/crunch/man/setEntitySlot.Rd                           |    1 
 crunch-1.15.0/crunch/man/settings.Rd                                |    1 
 crunch-1.15.0/crunch/man/share.Rd                                   |    1 
 crunch-1.15.0/crunch/man/shojiURL.Rd                                |    1 
 crunch-1.15.0/crunch/man/shojifyMetadata.Rd                         |    1 
 crunch-1.15.0/crunch/man/show-crunch.Rd                             |   16 
 crunch-1.15.0/crunch/man/subvars-extract.Rd                         |   27 
 crunch-1.15.0/crunch/man/tabBook.Rd                                 |only
 crunch-1.15.0/crunch/man/tabbook-methods.Rd                         |only
 crunch-1.15.0/crunch/man/table.Rd                                   |    1 
 crunch-1.15.0/crunch/man/teams.Rd                                   |   11 
 crunch-1.15.0/crunch/man/temp.options.Rd                            |    3 
 crunch-1.15.0/crunch/man/toVariable.Rd                              |   12 
 crunch-1.15.0/crunch/man/tojson-crunch.Rd                           |    9 
 crunch-1.15.0/crunch/man/tokenAuth.Rd                               |    1 
 crunch-1.15.0/crunch/man/tuple-methods.Rd                           |   23 
 crunch-1.15.0/crunch/man/type.Rd                                    |    3 
 crunch-1.15.0/crunch/man/unbind.Rd                                  |    1 
 crunch-1.15.0/crunch/man/unshare.Rd                                 |    1 
 crunch-1.15.0/crunch/man/updateDatasetList.Rd                       |    1 
 crunch-1.15.0/crunch/man/urls.Rd                                    |   13 
 crunch-1.15.0/crunch/man/var-categories.Rd                          |   21 
 crunch-1.15.0/crunch/man/variable-extract.Rd                        |    5 
 crunch-1.15.0/crunch/man/variable-to-R.Rd                           |    3 
 crunch-1.15.0/crunch/man/variable-update.Rd                         |   25 
 crunch-1.15.0/crunch/man/variableMetadata.Rd                        |    1 
 crunch-1.15.0/crunch/man/versions.Rd                                |    1 
 crunch-1.15.0/crunch/man/weight.Rd                                  |    1 
 crunch-1.15.0/crunch/man/which.Rd                                   |    1 
 crunch-1.15.0/crunch/man/with-context-manager.Rd                    |    1 
 crunch-1.15.0/crunch/tests/testthat/api/datasets/1.json             |    1 
 crunch-1.15.0/crunch/tests/testthat/api/datasets/1/multitables      |only
 crunch-1.15.0/crunch/tests/testthat/api/datasets/1/multitables.json |only
 crunch-1.15.0/crunch/tests/testthat/api/datasets/3.json             |    1 
 crunch-1.15.0/crunch/tests/testthat/api/datasets/3/multitables.json |only
 crunch-1.15.0/crunch/tests/testthat/helper-contexts.R               |    6 
 crunch-1.15.0/crunch/tests/testthat/helper.R                        |    2 
 crunch-1.15.0/crunch/tests/testthat/test-append-conflicts.R         |   24 
 crunch-1.15.0/crunch/tests/testthat/test-append-debug.R             |    4 
 crunch-1.15.0/crunch/tests/testthat/test-cube-bases.R               |only
 crunch-1.15.0/crunch/tests/testthat/test-cube-errors.R              |   57 -
 crunch-1.15.0/crunch/tests/testthat/test-cubes.R                    |  267 +++----
 crunch-1.15.0/crunch/tests/testthat/test-filters.R                  |    2 
 crunch-1.15.0/crunch/tests/testthat/test-multitables.R              |only
 crunch-1.15.0/crunch/tests/testthat/test-progress.R                 |    8 
 crunch-1.15.0/crunch/tests/testthat/test-projects.R                 |    2 
 crunch-1.15.0/crunch/tests/testthat/test-variable-catalog.R         |    4 
 crunch-1.15.0/crunch/tests/testthat/test-versioning.R               |    8 
 crunch-1.15.0/crunch/tests/testthat/test-weighting.R                |    4 
 188 files changed, 981 insertions(+), 1104 deletions(-)

More information about crunch at CRAN
Permanent link

Package codingMatrices updated to version 0.2.2 with previous version 0.2.1 dated 2016-07-09

Title: Alternative Factor Coding Matrices for Linear Model Formulae
Description: A collection of coding functions as alternatives to the standard functions in the stats package, which have names starting with 'contr.'. Their main advantage is that they provide a consistent method for defining marginal effects in multi-way factorial models. In a simple one-way ANOVA model the intercept term is always the simple average of the class means.
Author: Bill Venables
Maintainer: Bill Venables <Bill.Venables@gmail.com>

Diff between codingMatrices versions 0.2.1 dated 2016-07-09 and 0.2.2 dated 2017-02-23

 DESCRIPTION                 |    8 
 MD5                         |   14 
 NAMESPACE                   |   34 -
 R/code_extra.R              |  864 ++++++++++++++++++++++----------------------
 build/vignette.rds          |binary
 inst/doc/codingMatrices.pdf |binary
 man/Codings.Rd              |  241 ++++++------
 man/mean_contrasts.Rd       |   47 +-
 8 files changed, 603 insertions(+), 605 deletions(-)

More information about codingMatrices at CRAN
Permanent link

Package catlearn updated to version 0.4 with previous version 0.3 dated 2016-08-18

Title: Formal Modeling for Psychology
Description: Formal psychological models, independently-replicated data sets against which to test them, and simulation archives.
Author: Andy Wills
Maintainer: Andy Wills <andy@willslab.co.uk>

Diff between catlearn versions 0.3 dated 2016-08-18 and 0.4 dated 2017-02-23

 DESCRIPTION         |    8 ++++----
 MD5                 |   29 ++++++++++++++++++-----------
 NAMESPACE           |    4 +++-
 R/RcppExports.R     |    6 +++++-
 R/nosof88train.R    |    5 ++++-
 R/nosof94train.R    |    8 ++++----
 R/shin92train.R     |    5 +++--
 R/slpDIVA.R         |only
 R/slpRW.R           |only
 man/nosof88train.Rd |   24 ++++++++++++++----------
 man/nosof94train.Rd |   22 +++++++++++++---------
 man/shin92train.Rd  |   18 ++++++++++++------
 man/slpALCOVE.Rd    |   10 +++++-----
 man/slpCOVIS.Rd     |only
 man/slpDIVA.Rd      |only
 man/slpRW.Rd        |only
 src/RcppExports.cpp |   26 +++++++++++++++++++++-----
 src/init.c          |only
 src/slpcovis.cpp    |only
 19 files changed, 106 insertions(+), 59 deletions(-)

More information about catlearn at CRAN
Permanent link

Package poplite updated to version 0.99.17.3 with previous version 0.99.16 dated 2015-02-12

Title: Tools for Simplifying the Population and Querying of SQLite Databases
Description: Provides objects and accompanying methods which facilitates populating and querying SQLite databases.
Author: Daniel Bottomly [cre, aut], Shannon McWeeney [aut], Beth Wilmot [aut]
Maintainer: Daniel Bottomly <bottomly@ohsu.edu>

Diff between poplite versions 0.99.16 dated 2015-02-12 and 0.99.17.3 dated 2017-02-23

 DESCRIPTION                   |   12 ++--
 MD5                           |   20 +++---
 NAMESPACE                     |    8 ++
 R/Database.R                  |  125 +++++++++++++++++++++++++++---------------
 R/tableSchemaList.R           |  104 +++++++++++++++++++---------------
 README.md                     |   12 ++--
 build/vignette.rds            |binary
 data/clinical.rda             |binary
 inst/doc/poplite.pdf          |binary
 man/Database.Rd               |    3 +
 tests/testthat/test-poplite.R |   18 ++++--
 11 files changed, 185 insertions(+), 117 deletions(-)

More information about poplite at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.