Sun, 26 Feb 2017

Package Rfast updated to version 1.7.5 with previous version 1.7.4 dated 2017-02-22

Title: Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Column- and row- wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), Mahalanobis distance are some of the many fast functions.
Author: Manos Papadakis, Michail Tsagris, Marios Dimitriadis, Ioannis Tsamardinos, Matteo Fasiolo, Giorgos Borboudakis and John Burkardt
Maintainer: Manos Papadakis <papadakm95@gmail.com>

Diff between Rfast versions 1.7.4 dated 2017-02-22 and 1.7.5 dated 2017-02-26

 DESCRIPTION          |    8 ++++----
 MD5                  |   18 +++++++++---------
 R/check_data.R       |   32 +++++++++++++++-----------------
 man/Rfast-package.Rd |    4 ++--
 man/comb_n.Rd        |    3 +--
 src/colmeds.cpp      |   16 +++++++++-------
 src/cova.cpp         |    3 ++-
 src/init.c           |    4 ++--
 src/mn.cpp           |    2 +-
 src/mn.h             |    2 +-
 10 files changed, 46 insertions(+), 46 deletions(-)

More information about Rfast at CRAN
Permanent link

Package mets updated to version 1.2.1 with previous version 1.2 dated 2017-02-04

Title: Analysis of Multivariate Event Times
Description: Implementation of various statistical models for multivariate event history data. Including multivariate cumulative incidence models, and bivariate random effects probit models (Liability models). Also contains two-stage binomial modelling that can do pairwise odds-ratio dependence modelling based marginal logistic regression models. This is an alternative to the alternating logistic regression approach (ALR).
Author: Klaus K. Holst and Thomas Scheike
Maintainer: Klaus K. Holst <klaus@holst.it>

Diff between mets versions 1.2 dated 2017-02-04 and 1.2.1 dated 2017-02-26

 mets-1.2.1/mets/DESCRIPTION                            |   10 
 mets-1.2.1/mets/MD5                                    |  208 +++--
 mets-1.2.1/mets/NAMESPACE                              |   15 
 mets-1.2.1/mets/NEWS                                   |   10 
 mets-1.2.1/mets/R/Dbvn.R                               |    2 
 mets-1.2.1/mets/R/RcppExports.R                        |    4 
 mets-1.2.1/mets/R/aalenfrailty.R                       |    4 
 mets-1.2.1/mets/R/binomial.twostage.R                  |   36 
 mets-1.2.1/mets/R/blocksample.R                        |   52 +
 mets-1.2.1/mets/R/daggregate.R                         |   48 +
 mets-1.2.1/mets/R/dby.R                                |  247 ++++--
 mets-1.2.1/mets/R/dtable.R                             |    8 
 mets-1.2.1/mets/R/dtransform.R                         |only
 mets-1.2.1/mets/R/dutils.R                             |  639 +++++++++--------
 mets-1.2.1/mets/R/fastreshape.R                        |   36 
 mets-1.2.1/mets/R/lifecourse.R                         |    6 
 mets-1.2.1/mets/R/marginalprobit.R                     |only
 mets-1.2.1/mets/R/mets-package.R                       |    3 
 mets-1.2.1/mets/R/phreg.R                              |    8 
 mets-1.2.1/mets/R/pmvn.R                               |    2 
 mets-1.2.1/mets/R/procformula.R                        |  108 ++
 mets-1.2.1/mets/R/twostage.R                           |  102 +-
 mets-1.2.1/mets/inst/devel                             |only
 mets-1.2.1/mets/inst/doc                               |only
 mets-1.2.1/mets/man/ClaytonOakes.Rd                    |    1 
 mets-1.2.1/mets/man/Dbvn.Rd                            |    1 
 mets-1.2.1/mets/man/EVaddGam.Rd                        |    7 
 mets-1.2.1/mets/man/Grandom.cif.Rd                     |    7 
 mets-1.2.1/mets/man/aalenfrailty.Rd                    |    5 
 mets-1.2.1/mets/man/back2timereg.Rd                    |    1 
 mets-1.2.1/mets/man/bicomprisk.Rd                      |    1 
 mets-1.2.1/mets/man/binomial.twostage.Rd               |   14 
 mets-1.2.1/mets/man/biprobit.Rd                        |    3 
 mets-1.2.1/mets/man/blocksample.Rd                     |   16 
 mets-1.2.1/mets/man/bptwin.Rd                          |    9 
 mets-1.2.1/mets/man/casewise.Rd                        |    1 
 mets-1.2.1/mets/man/casewise.test.Rd                   |    3 
 mets-1.2.1/mets/man/cluster.index.Rd                   |    7 
 mets-1.2.1/mets/man/concordance.Rd                     |    1 
 mets-1.2.1/mets/man/cor.cif.Rd                         |    7 
 mets-1.2.1/mets/man/daggregate.Rd                      |   17 
 mets-1.2.1/mets/man/dby.Rd                             |   66 +
 mets-1.2.1/mets/man/dcor.Rd                            |   18 
 mets-1.2.1/mets/man/dcut.Rd                            |   35 
 mets-1.2.1/mets/man/dermalridges.Rd                    |    1 
 mets-1.2.1/mets/man/dermalridgesMZ.Rd                  |    1 
 mets-1.2.1/mets/man/divide.conquer.Rd                  |    1 
 mets-1.2.1/mets/man/divide.conquer.timereg.Rd          |    1 
 mets-1.2.1/mets/man/dlag.Rd                            |    1 
 mets-1.2.1/mets/man/dprint.Rd                          |    7 
 mets-1.2.1/mets/man/drelevel.Rd                        |   54 +
 mets-1.2.1/mets/man/dsort.Rd                           |    3 
 mets-1.2.1/mets/man/dtable.Rd                          |    4 
 mets-1.2.1/mets/man/dtransform.Rd                      |only
 mets-1.2.1/mets/man/easy.binomial.twostage.Rd          |    1 
 mets-1.2.1/mets/man/easy.survival.twostage.Rd          |    1 
 mets-1.2.1/mets/man/eventpois.Rd                       |    1 
 mets-1.2.1/mets/man/familycluster.index.Rd             |    7 
 mets-1.2.1/mets/man/familyclusterWithProbands.index.Rd |    7 
 mets-1.2.1/mets/man/fast.approx.Rd                     |    1 
 mets-1.2.1/mets/man/fast.pattern.Rd                    |    1 
 mets-1.2.1/mets/man/fast.reshape.Rd                    |    9 
 mets-1.2.1/mets/man/internal.Rd                        |   63 -
 mets-1.2.1/mets/man/ipw.Rd                             |    1 
 mets-1.2.1/mets/man/ipw2.Rd                            |    1 
 mets-1.2.1/mets/man/lifecourse.Rd                      |    7 
 mets-1.2.1/mets/man/lifetable.matrix.Rd                |    3 
 mets-1.2.1/mets/man/mena.Rd                            |    1 
 mets-1.2.1/mets/man/mets-package.Rd                    |    1 
 mets-1.2.1/mets/man/mets.options.Rd                    |    1 
 mets-1.2.1/mets/man/migr.Rd                            |    1 
 mets-1.2.1/mets/man/multcif.Rd                         |    1 
 mets-1.2.1/mets/man/np.Rd                              |    1 
 mets-1.2.1/mets/man/phreg.Rd                           |    1 
 mets-1.2.1/mets/man/plack.cif.Rd                       |    1 
 mets-1.2.1/mets/man/printcasewisetest.Rd               |    1 
 mets-1.2.1/mets/man/prt.Rd                             |    1 
 mets-1.2.1/mets/man/random.cif.Rd                      |    7 
 mets-1.2.1/mets/man/simAalenFrailty.Rd                 |    1 
 mets-1.2.1/mets/man/simClaytonOakes.Rd                 |    1 
 mets-1.2.1/mets/man/simClaytonOakesWei.Rd              |    1 
 mets-1.2.1/mets/man/summary.cor.Rd                     |    7 
 mets-1.2.1/mets/man/survival.twostage.Rd               |    9 
 mets-1.2.1/mets/man/test.conc.Rd                       |    1 
 mets-1.2.1/mets/man/tetrachoric.Rd                     |    3 
 mets-1.2.1/mets/man/twin.clustertrunc.Rd               |    1 
 mets-1.2.1/mets/man/twinbmi.Rd                         |    1 
 mets-1.2.1/mets/man/twinlm.Rd                          |    7 
 mets-1.2.1/mets/man/twinsim.Rd                         |    7 
 mets-1.2.1/mets/man/twinstut.Rd                        |    1 
 mets-1.2.1/mets/src/RcppExports.cpp                    |    9 
 mets-1.2.1/mets/src/apply.cpp                          |   15 
 mets-1.2.1/mets/src/binomial-twostage.cpp              |   27 
 mets-1.2.1/mets/src/init.c                             |only
 mets-1.2.1/mets/src/mvn.cpp                            |    4 
 mets-1.2.1/mets/src/survival-twostage.cpp              |   25 
 mets-1.2.1/mets/src/tools.cpp                          |    8 
 mets-1.2.1/mets/tests/testthat/test_dutils.R           |   37 
 mets-1.2/mets/R/bptwin2.R                              |only
 mets-1.2/mets/R/uniprobit.R                            |only
 mets-1.2/mets/inst/misc/bptwin-vs-bintwostage.r        |only
 mets-1.2/mets/inst/misc/pairwise-binomial-twostage.r   |only
 102 files changed, 1349 insertions(+), 777 deletions(-)

More information about mets at CRAN
Permanent link

New package interflex with initial version 1.0.2
Package: interflex
Type: Package
Title: Multiplicative Interaction Models Diagnostics and Visualization
Version: 1.0.2
Date: 2017-1-25
Author: Jens Hainmueller, Jonathan Mummolo and Yiqing Xu
Maintainer: Yiqing Xu <yiqingxu@ucsd.edu>
Description: Performs diagnostic tests of multiplicative interaction models and plots non-linear marginal effects of a treatment on an outcome across different values of a moderator.
License: GPL-2
Imports: Rcpp (>= 0.12.3), ggplot2 (>= 2.1.0), sandwich (>= 2.3-4), pcse (>= 1.9), lmtest (>= 0.9-34), Lmoments (>= 1.2-3), doParallel (>= 1.0.10), foreach (>= 1.4.3), mgcv(>= 1.8-16)
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2017-02-26 19:04:49 UTC; xyq
Repository: CRAN
Date/Publication: 2017-02-27 00:03:42

More information about interflex at CRAN
Permanent link

Package eiCompare updated to version 1.8 with previous version 1.7 dated 2016-09-06

Title: Compares EI, Goodman, RxC Estimates
Description: Compares estimates from three ecological inferences routines, based on King et. al.'s approach.
Author: Loren Collingwood
Maintainer: Loren Collingwood <loren.collingwood@ucr.edu>

Diff between eiCompare versions 1.7 dated 2016-09-06 and 1.8 dated 2017-02-26

 DESCRIPTION                   |   10 +++++-----
 MD5                           |   14 +++++++-------
 NAMESPACE                     |    1 +
 R/ei_est_gen.R                |   40 +++++++++++++++++++++++++++++++++++-----
 R/plot.ei_compare.R           |    3 ++-
 inst/doc/eiCompare-manual.pdf |binary
 man/ei_est_gen.Rd             |   18 +++++++++++++++---
 man/ei_rc_good_table.Rd       |    6 +++++-
 8 files changed, 70 insertions(+), 22 deletions(-)

More information about eiCompare at CRAN
Permanent link

New package MultisiteMediation with initial version 0.0.1
Package: MultisiteMediation
Version: 0.0.1
Date: 2017-02-25
Title: Causal Mediation Analysis in Multisite Trials
Author: Xu Qin, Guanglei Hong
Maintainer: Xu Qin <xuqin@uchicago.edu>
Depends: R (>= 3.1.0), lme4, statmod, Matrix
Description: We implement multisite causal mediation analysis using the methods proposed by Qin and Hong (in press). It enables causal mediation analysis in multisite trials, in which individuals are assigned to a treatment or a control group at each site. It allows for estimation and hypothesis testing for not only the population average but also the between-site variance of direct and indirect effects. This strategy conveniently relaxes the assumption of no treatment-by-mediator interaction while greatly simplifying the outcome model specification without invoking strong distributional assumptions.
License: GPL-2
RoxygenNote: 6.0.1
URL: https://github.com/Xu-Qin/MultisiteMediation
BugReports: https://github.com/Xu-Qin/MultisiteMediation/issues
NeedsCompilation: no
Packaged: 2017-02-26 16:03:07 UTC; Xu Qin
Repository: CRAN
Date/Publication: 2017-02-26 19:56:45

More information about MultisiteMediation at CRAN
Permanent link

Package gdistance updated to version 1.2-1 with previous version 1.1-9 dated 2015-08-11

Title: Distances and Routes on Geographical Grids
Description: Calculate distances and routes on geographic grids.
Author: Jacob van Etten
Maintainer: Jacob van Etten <jacobvanetten@yahoo.com>

Diff between gdistance versions 1.1-9 dated 2015-08-11 and 1.2-1 dated 2017-02-26

 ChangeLog                |   83 +-
 DESCRIPTION              |   11 
 MD5                      |   25 
 R/accCost.R              |   72 -
 build/vignette.rds       |binary
 data/genDist.RData       |binary
 data/popCoord.RData      |binary
 inst/CITATION            |only
 inst/doc/gdistance1.R    |    4 
 inst/doc/gdistance1.Rnw  | 1721 +++++++++++++++++++++++------------------------
 inst/doc/gdistance1.pdf  |binary
 man/gdistance-package.Rd |  108 +-
 vignettes/gdistance1.Rnw | 1721 +++++++++++++++++++++++------------------------
 vignettes/gdistance1.bib |  436 ++++++-----
 14 files changed, 2116 insertions(+), 2065 deletions(-)

More information about gdistance at CRAN
Permanent link

New package evaluator with initial version 0.1.0
Package: evaluator
Title: Information Security Quantified Risk Assessment Toolkit
Version: 0.1.0
Authors@R: person("David", "Severski", email = "davidski@deadheaven.com", role = c("aut", "cre"))
Description: An open source information security strategic risk analysis toolkit based on the OpenFAIR taxonomy <https://www2.opengroup.org/ogsys/catalog/C13K> and risk assessment standard <https://www2.opengroup.org/ogsys/catalog/C13G>. Empowers an organization to perform a quantifiable, repeatable, and data-driven review of its security program.
Depends: R (>= 3.3.2)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: dplyr, extrafont, ggalt (>= 0.4.0), ggplot2, magrittr, mc2d, pander, purrr, psych, readr, readxl, scales, stringi, tibble, tidyr, tcltk, viridis
RoxygenNote: 6.0.1
Suggests: DT, flexdashboard (>= 0.4), modeest, knitr, rmarkdown, shiny, testthat
VignetteBuilder: knitr
URL: http://github.com/davidski/evaluator
BugReports: https://github.com/davidski/evaluator/issues
NeedsCompilation: no
Packaged: 2017-02-26 15:59:53 UTC; davidski
Author: David Severski [aut, cre]
Maintainer: David Severski <davidski@deadheaven.com>
Repository: CRAN
Date/Publication: 2017-02-26 19:56:53

More information about evaluator at CRAN
Permanent link

Package brms updated to version 1.5.1 with previous version 1.5.0 dated 2017-02-17

Title: Bayesian Regression Models using Stan
Description: Fit Bayesian generalized (non-)linear multilevel models using Stan for full Bayesian inference. A wide range of distributions and link functions are supported, allowing users to fit -- among others -- linear, robust linear, binomial, Poisson, survival, response times, ordinal, zero-inflated, hurdle, and even non-linear models all in a multilevel context. Further modeling options include auto-correlation and smoothing terms, user defined dependence structures, censored data, meta-analytic standard errors, and quite a few more. In addition, all parameters of the response distribution can be predicted in order to perform distributional regression. Prior specifications are flexible and explicitly encourage users to apply prior distributions that actually reflect their beliefs. In addition, model fit can easily be assessed and compared with posterior predictive checks and leave-one-out cross-validation.
Author: Paul-Christian Bürkner [aut, cre]
Maintainer: Paul-Christian Bürkner <paul.buerkner@gmail.com>

Diff between brms versions 1.5.0 dated 2017-02-17 and 1.5.1 dated 2017-02-26

 DESCRIPTION                            |   14 +-
 MD5                                    |  193 +++++++++++++--------------
 NAMESPACE                              |    9 -
 R/brmsfit-helpers.R                    |   68 ++++++---
 R/brmsfit-methods.R                    |  129 ++++++++++--------
 R/data-predictor.R                     |   13 +
 R/distributions.R                      |  229 +++++++++++++++++++++++++++------
 R/extract_draws.R                      |   87 +++++++-----
 R/families.R                           |    8 -
 R/fitted.R                             |    6 
 R/generics.R                           |   17 ++
 R/linear_predictor.R                   |    3 
 R/loglik.R                             |    7 -
 R/make_stancode.R                      |    2 
 R/make_standata.R                      |   13 +
 R/predict.R                            |    4 
 R/priors.R                             |  118 +++++++++++------
 R/rename.R                             |    6 
 R/stan-helpers.R                       |   60 ++++----
 R/stan-predictor.R                     |   39 +++--
 R/sysdata.rda                          |binary
 R/validate.R                           |   16 +-
 inst/NEWS.Rd                           |   32 ++++
 man/LOO.Rd                             |   11 -
 man/VarCorr.brmsfit.Rd                 |    3 
 man/WAIC.Rd                            |   11 -
 man/addition-terms.Rd                  |   11 -
 man/as.mcmc.brmsfit.Rd                 |    3 
 man/brm.Rd                             |    7 -
 man/brmsfamily.Rd                      |   41 ++---
 man/brmsformula.Rd                     |    3 
 man/coef.brmsfit.Rd                    |    1 
 man/compare_ic.Rd                      |    1 
 man/cor_ar.Rd                          |    9 -
 man/cor_arma.Rd                        |    9 -
 man/cor_arr.Rd                         |    7 -
 man/cor_bsts.Rd                        |    1 
 man/cor_fixed.Rd                       |    1 
 man/cor_ma.Rd                          |    9 -
 man/cs.Rd                              |    1 
 man/diagnostic-quantities.Rd           |   11 -
 man/epilepsy.Rd                        |    1 
 man/expose_functions.Rd                |    3 
 man/expp1.Rd                           |    1 
 man/fitted.brmsfit.Rd                  |    1 
 man/fixef.brmsfit.Rd                   |    3 
 man/get_prior.Rd                       |    1 
 man/gr.Rd                              |    1 
 man/horseshoe.Rd                       |    9 +
 man/hypothesis.Rd                      |    7 -
 man/inhaler.Rd                         |    1 
 man/inv_logit_scaled.Rd                |    1 
 man/is.brmsfit.Rd                      |    1 
 man/is.brmsformula.Rd                  |    1 
 man/is.brmsprior.Rd                    |    1 
 man/is.brmsterms.Rd                    |    1 
 man/is.cor_brms.Rd                     |    5 
 man/kidney.Rd                          |    1 
 man/lasso.Rd                           |    1 
 man/launch_shiny.Rd                    |    1 
 man/log_lik.brmsfit.Rd                 |    5 
 man/logit_scaled.Rd                    |    1 
 man/logm1.Rd                           |    1 
 man/make_stancode.Rd                   |    1 
 man/make_standata.Rd                   |    3 
 man/marginal_effects.Rd                |    7 -
 man/marginal_smooths.Rd                |   15 +-
 man/me.Rd                              |    1 
 man/mm.Rd                              |    1 
 man/mo.Rd                              |    1 
 man/ngrps.Rd                           |    2 
 man/nsamples.Rd                        |    3 
 man/pairs.brmsfit.Rd                   |    1 
 man/parnames.Rd                        |    5 
 man/parse_bf.Rd                        |    1 
 man/plot.brmsfit.Rd                    |    1 
 man/posterior_samples.Rd               |    6 
 man/pp_check.brmsfit.Rd                |    3 
 man/predict.brmsfit.Rd                 |    5 
 man/print.brmsfit.Rd                   |    1 
 man/print.brmsprior.Rd                 |    1 
 man/prior_samples.Rd                   |    2 
 man/prior_summary.brmsfit.Rd           |    3 
 man/ranef.brmsfit.Rd                   |    3 
 man/residuals.brmsfit.Rd               |    5 
 man/restructure.Rd                     |only
 man/set_prior.Rd                       |    4 
 man/stancode.Rd                        |    1 
 man/standata.Rd                        |    1 
 man/stanplot.Rd                        |    3 
 man/summary.brmsfit.Rd                 |    1 
 man/update.brmsfit.Rd                  |   22 +--
 man/vcov.brmsfit.Rd                    |    1 
 tests/testthat/tests.brmsfit-methods.R |   36 ++++-
 tests/testthat/tests.distributions.R   |   70 ++++++++++
 tests/testthat/tests.loglik.R          |    8 -
 tests/testthat/tests.make_stancode.R   |   42 ++++--
 tests/testthat/tests.make_standata.R   |   22 ++-
 98 files changed, 980 insertions(+), 563 deletions(-)

More information about brms at CRAN
Permanent link

New package WebGestaltR with initial version 0.0.5
Package: WebGestaltR
Type: Package
Title: The R Version of WebGestalt
Version: 0.0.5
Date: 2017-02-24
Author: Jing Wang <jingwang.uestc@gmail.com>
Maintainer: Jing Wang <jingwang.uestc@gmail.com>
Description: The web version WebGestalt <http://www.webgestalt.org> supports 12 organisms, 324 gene identifiers and 150,937 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis. The user-friendly output interface allow interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneous analyze multiple gene lists.
License: LGPL
LazyLoad: yes
Depends: R (>= 3.3), pkgmaker (>= 0.22), rjson (>= 0.2.15)
Imports: methods, data.table (>= 1.10.0), parallel (>= 3.3.2), doParallel (>= 1.0.10), foreach (>= 1.4.0), rPython (>= 0.0-6)
Collate: zzz.R WebGestaltR.R WebGestaltR_batch.R IDMapping.R GOSlimSummary.R listGeneSet.R listIDType.R listOrganism.R readGMT.R listReferenceSet.R listArchiveURL.R formatCheck.R
SystemRequirements: Java, Python
NeedsCompilation: no
Packaged: 2017-02-24 16:22:26 UTC; jingwang
Repository: CRAN
Date/Publication: 2017-02-26 16:24:22

More information about WebGestaltR at CRAN
Permanent link

Package TropFishR updated to version 1.1 with previous version 1.0.2 dated 2016-12-30

Title: Tropical Fisheries Analysis with R
Description: Fish stock assessment methods and fisheries models based on the FAO Manual "Introduction to tropical fish stock assessment" by P. Sparre and S.C. Venema <http://www.fao.org/docrep/W5449E/W5449E00.htm>. Focus is the analysis of length-frequency data and data-poor fisheries.
Author: Tobias K. Mildenberger, Marc H. Taylor, Matthias Wolff
Maintainer: Tobias K. Mildenberger <t.k.mildenberger@gmail.com>

Diff between TropFishR versions 1.0.2 dated 2016-12-30 and 1.1 dated 2017-02-26

 DESCRIPTION          |   15 +++---
 MD5                  |   69 +++++++++++++++++--------------
 NAMESPACE            |    1 
 R/Bhattacharya.R     |   22 ++++++++-
 R/ELEFAN.R           |    5 +-
 R/ELEFAN_GA.R        |   17 +++++++
 R/ELEFAN_SA.R        |   10 ++++
 R/M_empirical.R      |   11 ++--
 R/VBGF.R             |    9 ++--
 R/catchCurve.R       |   13 +++++
 R/lfqCreate.R        |   85 ++++++++++++++++++++++++++------------
 R/lfqModify.R        |  113 +++++++++++++++++++++++++++++++++++++--------------
 R/powell_wetherall.R |   13 ++++-
 R/predict_mod.R      |    5 +-
 R/synLFQ4.R          |    4 +
 R/synLFQ5.R          |    2 
 R/synLFQ6.R          |    4 -
 R/synLFQ7.R          |only
 README.md            |   25 +++++++++--
 build                |only
 data/synLFQ4.rda     |binary
 data/synLFQ5.rda     |binary
 data/synLFQ6.rda     |binary
 data/synLFQ7.rda     |only
 inst                 |only
 man/Bhattacharya.Rd  |    2 
 man/ELEFAN_GA.Rd     |    9 +++-
 man/ELEFAN_SA.Rd     |    1 
 man/M_empirical.Rd   |    7 +--
 man/lfqCreate.Rd     |   14 ++++--
 man/lfqModify.Rd     |   17 +++++--
 man/predict_mod.Rd   |    4 +
 man/synLFQ4.Rd       |    4 +
 man/synLFQ5.Rd       |    2 
 man/synLFQ6.Rd       |    4 -
 man/synLFQ7.Rd       |only
 vignettes            |only
 37 files changed, 348 insertions(+), 139 deletions(-)

More information about TropFishR at CRAN
Permanent link

Package stream updated to version 1.2-4 with previous version 1.2-3 dated 2016-08-07

Title: Infrastructure for Data Stream Mining
Description: A framework for data stream modeling and associated data mining tasks such as clustering and classification. The development of this package was supported in part by NSF IIS-0948893 and NIH R21HG005912.
Author: Michael Hahsler [aut, cre, cph], Matthew Bolanos [aut, cph], John Forrest [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>

Diff between stream versions 1.2-3 dated 2016-08-07 and 1.2-4 dated 2017-02-26

 DESCRIPTION                   |    8 
 MD5                           |   49 -
 NAMESPACE                     |    2 
 NEWS.md                       |only
 R/DSD_ReadDB.R                |   31 
 R/RcppExports.R               |only
 R/kmeansW.R                   |   26 
 README.md                     |   54 -
 inst/CITATION                 |only
 inst/doc/stream.R             |  188 ++--
 inst/doc/stream.Rnw           | 1596 +++++++++++++++++++++---------------------
 inst/doc/stream.pdf           |binary
 inst/doc/stream_extension.pdf |binary
 man/DSC_DBSCAN.Rd             |   10 
 man/DSC_DBSTREAM.Rd           |   41 -
 man/DSC_DStream.Rd            |   78 +-
 man/DSC_Reachability.Rd       |   16 
 man/DSC_Sample.Rd             |   26 
 man/DSC_Window.Rd             |   12 
 man/evaluate.Rd               |  140 +--
 src/DBSTREAM.cpp              |    2 
 src/DStream.cpp               |    2 
 src/RcppExports.cpp           |only
 src/init.c                    |only
 src/kmeansw.cc                |   58 +
 src/kmeansw.h                 |    4 
 vignettes/stream.Rnw          | 1596 +++++++++++++++++++++---------------------
 vignettes/stream.bib          |   79 +-
 28 files changed, 2052 insertions(+), 1966 deletions(-)

More information about stream at CRAN
Permanent link

Package qicharts updated to version 0.5.4 with previous version 0.5.3 dated 2016-11-28

Title: Quality Improvement Charts
Description: Functions for making run charts and basic Shewhart control charts for measure and count data. The main function, qic(), creates run and control charts and has a simple interface with a rich set of options to control data analysis and plotting, including options for automatic data aggregation by subgroups, easy analysis of before-and-after data, exclusion of one or more data points from analysis, and splitting charts into sequential time periods. Missing values and empty subgroups are handled gracefully.
Author: Jacob Anhoej [aut, cre], Timo Roeder [ctb]
Maintainer: Jacob Anhoej <jacob@anhoej.net>

Diff between qicharts versions 0.5.3 dated 2016-11-28 and 0.5.4 dated 2017-02-26

 DESCRIPTION                 |   12 +++---
 MD5                         |   30 +++++++--------
 NAMESPACE                   |    1 
 NEWS                        |   10 +++++
 R/qic.R                     |    7 +--
 R/tcc.R                     |   87 +++++++++++++++++++++++++-------------------
 R/trc.R                     |    1 
 README.md                   |    2 -
 inst/doc/controlcharts.html |   30 +++++++--------
 inst/doc/runcharts.html     |   18 ++++-----
 man/paretochart.Rd          |    1 
 man/plot.qic.Rd             |    1 
 man/qic.Rd                  |    1 
 man/summary.tcc.Rd          |    1 
 man/tcc.Rd                  |   11 +++--
 man/trc.Rd                  |    1 
 16 files changed, 118 insertions(+), 96 deletions(-)

More information about qicharts at CRAN
Permanent link

Package IDPSurvival updated to version 1.2 with previous version 1.1 dated 2016-09-22

Title: Imprecise Dirichlet Process for Survival Analysis
Description: Functions to perform robust nonparametric survival analysis with right censored data using a prior near-ignorant Dirichlet Process. Mangili, F., Benavoli, A., de Campos, C.P., Zaffalon, M. (2015) <doi:10.1002/bimj.201500062>.
Author: Francesca Mangili <francesca@idsia.ch>, Alessio Benavoli <alessio@idsia.ch>, Cassio P. de Campos <cassiopc@acm.org>, Marco Zaffalon <zaffalon@idsia.ch>
Maintainer: Francesca Mangili <francesca@idsia.ch>

Diff between IDPSurvival versions 1.1 dated 2016-09-22 and 1.2 dated 2017-02-26

 DESCRIPTION              |    9 
 MD5                      |   13 
 build/vignette.rds       |binary
 inst/doc/IDPSurvival.pdf |binary
 inst/tests/article.r     |  634 ++++++++++++++++++++++++++---------------------
 inst/tests/functions.r   |only
 man/Aids2.Rd             |  106 +++----
 man/aml.Rd               |  122 ++++-----
 8 files changed, 483 insertions(+), 401 deletions(-)

More information about IDPSurvival at CRAN
Permanent link

New package AWR.Kinesis with initial version 1.7.3
Type: Package
Package: AWR.Kinesis
Maintainer: Gergely Daroczi <gergely.daroczi@card.com>
Author: Gergely Daroczi <gergely.daroczi@card.com>
Title: Amazon 'Kinesis' Consumer Application for Stream Processing
Description: Fetching data from Amazon 'Kinesis' Streams using the Java-based 'MultiLangDaemon' interacting with Amazon Web Services ('AWS') for easy stream processing from R. For more information on 'Kinesis', see <https://aws.amazon.com/kinesis>.
Version: 1.7.3
Date: 2017-01-20
URL: https://github.com/cardcorp/AWR.Kinesis
License: AGPL-3
Imports: AWR, futile.logger, jsonlite, rJava
NeedsCompilation: no
Packaged: 2017-02-25 22:49:09 UTC; daroczig
Repository: CRAN
Date/Publication: 2017-02-26 16:24:19

More information about AWR.Kinesis at CRAN
Permanent link

New package automagic with initial version 0.3
Package: automagic
Type: Package
Title: Automagically Document and Install Packages Necessary to Run R Code
Version: 0.3
Author: Cole Brokamp
Maintainer: Cole Brokamp <cole.brokamp@gmail.com>
Description: Parse R code in a given directory for R packages and attempt to install them from CRAN or GitHub. Optionally use a dependencies file for tighter control over which package versions to install.
License: GPL
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
Depends: R (>= 3.1.0)
Imports: knitr, formatR, pacman, githubinstall, magrittr, dplyr, purrr, devtools, remotes, yaml
URL: https://github.com/cole-brokamp/automagic
BugReports: https://github.com/cole-brokamp/automagic/issues
NeedsCompilation: no
Packaged: 2017-02-24 22:39:46 UTC; cole
Repository: CRAN
Date/Publication: 2017-02-26 16:24:24

More information about automagic at CRAN
Permanent link

Package hwriterPlus (with last version 1.0-3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-01-14 1.0-3
2012-10-23 1.0-1

Permanent link
Package SARP.moodle updated to version 0.3.7 with previous version 0.3.6 dated 2017-02-19

Title: XML Output Functions for Easy Creation of Moodle Questions
Description: Provides a set of basic functions for creating Moodle XML output files suited for importing questions in Moodle (a learning management system, see <https://moodle.org/> for more information).
Author: Emmanuel Curis [aut, cre]
Maintainer: Emmanuel Curis <emmanuel.curis@parisdescartes.fr>

Diff between SARP.moodle versions 0.3.6 dated 2017-02-19 and 0.3.7 dated 2017-02-26

 DESCRIPTION               |    9 +++++----
 MD5                       |   27 ++++++++++++++-------------
 R/initialisation.R        |    7 ++++++-
 man/affichages.Rd         |   15 ++++++++-------
 man/categorie.Rd          |    6 +++---
 man/csv_glossaire.Rd      |    6 +++---
 man/cvs.moodle.Rd         |   14 ++++++--------
 man/debuter_xml.moodle.Rd |   18 +++++++++---------
 man/image.Rd              |   10 ++++------
 man/libre.moodle.Rd       |    2 +-
 man/numerique.moodle.Rd   |    2 +-
 man/package.Rd            |only
 man/qcm.moodle.Rd         |    5 +++--
 man/question_moodle.Rd    |   21 ++++++++++-----------
 man/vf.moodle.Rd          |    4 ++--
 15 files changed, 75 insertions(+), 71 deletions(-)

More information about SARP.moodle at CRAN
Permanent link

Package QuantTools updated to version 0.5.4 with previous version 0.5.3 dated 2016-12-09

Title: Enhanced Quantitative Trading Modelling
Description: Download and organize historical market data from multiple sources like Yahoo (<https://finance.yahoo.com>), Google (<https://www.google.com/finance>), Finam (<https://www.finam.ru/profile/moex-akcii/sberbank/export/>), MOEX (<https://www.moex.com/en/derivatives/contracts.aspx>) and IQFeed (<https://www.iqfeed.net/symbolguide/index.cfm?symbolguide=lookup>). Code your trading algorithms in modern C++11 with powerful event driven tick processing API including trading costs and exchange communication latency and transform detailed data seamlessly into R. In just few lines of code you will be able to visualize every step of your trading model from tick data to multi dimensional heat maps.
Author: Stanislav Kovalevsky
Maintainer: Stanislav Kovalevsky <so.kovalevsky@gmail.com>

Diff between QuantTools versions 0.5.3 dated 2016-12-09 and 0.5.4 dated 2017-02-26

 DESCRIPTION                                 |    8 
 MD5                                         |  274 +++---
 NAMESPACE                                   |    3 
 NEWS.md                                     |   60 -
 R/RcppExports.R                             |  441 +++++----
 R/add_last_values.R                         |    5 
 R/add_legend.R                              |    5 
 R/bw.R                                      |  160 ++-
 R/calc_decimal_resolution.R                 |    5 
 R/data_ticks.R                              |    2 
 R/distinct_colors.R                         |    4 
 R/doc.R                                     |    2 
 R/doc_BBands.R                              |   10 
 R/doc_Candle.R                              |    6 
 R/doc_Cost.R                                |   74 -
 R/doc_Crossover.R                           |   76 -
 R/doc_Ema.R                                 |    8 
 R/doc_Indicator.R                           |    8 
 R/doc_Order.R                               |  106 +-
 R/doc_Processor.R                           |  363 ++++----
 R/doc_RollLinReg.R                          |   10 
 R/doc_RollPercentRank.R                     |    8 
 R/doc_RollRange.R                           |   10 
 R/doc_RollSd.R                              |    8 
 R/doc_RollVolumeProfile.R                   |   10 
 R/doc_Rsi.R                                 |    8 
 R/doc_Sma.R                                 |    8 
 R/doc_Stochastic.R                          |   10 
 R/doc_Tick.R                                |    6 
 R/dof.R                                     |    1 
 R/empty_plot.R                              |    7 
 R/gen_futures_codes.R                       |    1 
 R/get_market_data.R                         |    7 
 R/hist_dt.R                                 |   93 +-
 R/iqfeed.R                                  |   25 
 R/iround.R                                  |    2 
 R/lapply_named.R                            |   58 -
 R/lines_ohlc.R                              |  131 +-
 R/lines_stacked_hist.R                      |    5 
 R/lmerge.R                                  |  169 +--
 R/multi_heatmap.R                           |  340 +++----
 R/plot_table.R                              |  126 ++
 R/plot_ts.R                                 |  622 +++++++------
 R/returns.R                                 |    2 
 R/roll_futures.R                            |    1 
 R/round_POSIXct.R                           |   84 -
 R/settings.R                                |  244 ++---
 R/store_market_data.R                       |    2 
 R/to_UTC.R                                  |only
 R/to_ticks.R                                |    7 
 data/datalist                               |    2 
 inst/examples                               |only
 inst/include/Alarm.h                        |only
 inst/include/BackTest/Processor.h           | 1248 +++++++++++++++-------------
 inst/include/BackTest/Statistics.h          |  853 +++++++++----------
 inst/include/BackTest/Trade.h               |    7 
 inst/include/CppToR.h                       |  120 +-
 inst/include/Indicators/BBands.h            |    6 
 inst/include/Indicators/RollLinReg.h        |   30 
 inst/include/Indicators/RollRange.h         |   13 
 inst/include/Indicators/RollVolumeProfile.h |   20 
 inst/include/Indicators/Stochastic.h        |    6 
 inst/include/ListBuilder.h                  |   69 +
 man/add_last_values.Rd                      |    1 
 man/add_legend.Rd                           |    1 
 man/back_test.Rd                            |    4 
 man/bbands.Rd                               |    1 
 man/bw.Rd                                   |   68 +
 man/calc_decimal_resolution.Rd              |    1 
 man/cpp_BBands.Rd                           |   22 
 man/cpp_Candle.Rd                           |    8 
 man/cpp_Cost.Rd                             |  106 +-
 man/cpp_Crossover.Rd                        |   20 
 man/cpp_Ema.Rd                              |   20 
 man/cpp_Indicator.Rd                        |   20 
 man/cpp_Order.Rd                            |    8 
 man/cpp_Processor.Rd                        |  464 ++++++----
 man/cpp_RollLinReg.Rd                       |  104 +-
 man/cpp_RollPercentRank.Rd                  |   22 
 man/cpp_RollRange.Rd                        |   24 
 man/cpp_RollSd.Rd                           |   22 
 man/cpp_RollVolumeProfile.Rd                |   24 
 man/cpp_Rsi.Rd                              |   22 
 man/cpp_Sma.Rd                              |   22 
 man/cpp_Stochastic.Rd                       |   24 
 man/cpp_Tick.Rd                             |    8 
 man/crossover.Rd                            |    1 
 man/distinct_colors.Rd                      |    1 
 man/dof.Rd                                  |    3 
 man/ema.Rd                                  |    1 
 man/empty_plot.Rd                           |    1 
 man/gen_futures_codes.Rd                    |    1 
 man/get_market_data.Rd                      |   13 
 man/hist_dt.Rd                              |    1 
 man/iqfeed.Rd                               |    2 
 man/iround.Rd                               |    1 
 man/lapply_named.Rd                         |    1 
 man/lines_ohlc.Rd                           |    1 
 man/lines_stacked_hist.Rd                   |    1 
 man/lmerge.Rd                               |    1 
 man/multi_heatmap.Rd                        |    3 
 man/na_locf.Rd                              |    1 
 man/plot_table.Rd                           |   15 
 man/plot_ts.Rd                              |   20 
 man/returns.Rd                              |    1 
 man/roll_futures.Rd                         |    1 
 man/roll_lm.Rd                              |    3 
 man/roll_percent_rank.Rd                    |    1 
 man/roll_range.Rd                           |    7 
 man/roll_sd.Rd                              |    1 
 man/roll_sd_filter.Rd                       |    1 
 man/roll_volume_profile.Rd                  |    1 
 man/round_POSIXct.Rd                        |    3 
 man/rsi.Rd                                  |    1 
 man/settings.Rd                             |    5 
 man/sma.Rd                                  |    1 
 man/stochastic.Rd                           |    1 
 man/store_market_data.Rd                    |    3 
 man/ticks.Rd                                |    3 
 man/to_UTC.Rd                               |only
 man/to_candles.Rd                           |    3 
 man/to_ticks.Rd                             |    3 
 man/wo.Rd                                   |    3 
 src/RcppExports.cpp                         |   38 
 src/back_test.cpp                           |    8 
 src/bbands.cpp                              |    5 
 src/crossover.cpp                           |    3 
 src/ema.cpp                                 |    3 
 src/init.c                                  |only
 src/na_locf.cpp                             |    3 
 src/roll_lm.cpp                             |    5 
 src/roll_percent_rank.cpp                   |    3 
 src/roll_range.cpp                          |    5 
 src/roll_sd.cpp                             |    3 
 src/roll_sd_filter.cpp                      |    2 
 src/roll_volume_profile.cpp                 |    3 
 src/rsi.cpp                                 |    3 
 src/sma.cpp                                 |    3 
 src/stochastic.cpp                          |    5 
 src/to_candles.cpp                          |   63 -
 140 files changed, 3950 insertions(+), 3330 deletions(-)

More information about QuantTools at CRAN
Permanent link

New package hrbrthemes with initial version 0.1.0
Package: hrbrthemes
Type: Package
Title: Additional Themes, Theme Components and Utilities for 'ggplot2'
Version: 0.1.0
Date: 2017-02-25
Authors@R: c( person("Bob", "Rudis", email = "bob@rud.is", role = c("aut", "cre")), person("Google", comment = "Roboto Condensed Font", role = c("cph")) )
Maintainer: Bob Rudis <bob@rud.is>
Description: A compilation of extra 'ggplot2' themes, scales and utilities, including a spell check function plot label fields and an overall emphasis on typography. A copy of the 'Google' font 'Roboto Condensed' <https://github.com/google/roboto/> is also included to support one of the typography-oriented themes.
URL: http://github.com/hrbrmstr/hrbrthemes
BugReports: https://github.com/hrbrmstr/hrbrthemes/issues
Copyright: file inst/COPYRIGHTS
License: MIT + file LICENSE
Suggests: testthat, dplyr, knitr, rmarkdown, gridExtra
Depends: R (>= 3.2.0)
Imports: ggplot2 (>= 2.2.1), grid, scales, extrafont, hunspell, stringi, purrr
RoxygenNote: 6.0.0
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-02-25 21:45:02 UTC; bob
Author: Bob Rudis [aut, cre], Google [cph] (Roboto Condensed Font)
Repository: CRAN
Date/Publication: 2017-02-26 00:47:44

More information about hrbrthemes at CRAN
Permanent link

Package funModeling updated to version 1.6.1 with previous version 1.6 dated 2017-01-12

Title: Learn Data Science Through the "Data Science Live Book"
Description: Around 10% of almost any predictive modeling project is spent in predictive modeling, 'funModeling' and the book <http://livebook.datascienceheroes.com/> are intended to cover remaining 90%: data preparation, profiling, selecting best variables 'dataViz', assessing model performance and other functions.
Author: Pablo Casas
Maintainer: Pablo Casas <pcasas.biz@gmail.com>

Diff between funModeling versions 1.6 dated 2017-01-12 and 1.6.1 dated 2017-02-26

 DESCRIPTION             |   12 +--
 MD5                     |   21 +++---
 NAMESPACE               |    8 ++
 R/cross_plot.R          |   15 +++-
 R/data_preparation.R    |   18 ++++-
 R/models_lib.R          |  149 +++++++++++++++++++++++++++++++++++++++++++++++-
 R/target_profiling.R    |    2 
 man/auto_grouping.Rd    |    4 -
 man/coord_plot.Rd       |only
 man/cross_plot.Rd       |    2 
 man/desc_groups.Rd      |only
 man/desc_groups_rank.Rd |only
 man/plotar.Rd           |    2 
 13 files changed, 206 insertions(+), 27 deletions(-)

More information about funModeling at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.