Title: Tidy RSS for R
Description:
With the objective of including data from RSS feeds into your analysis, tidyRSS parses RSS and Atom xml feeds and returns a tidy data frame.
Author: Robert Myles McDonnell
Maintainer: Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>
Diff between tidyRSS versions 1.0.0 dated 2017-02-24 and 1.0.1 dated 2017-03-01
DESCRIPTION | 13 + MD5 | 21 +-- NAMESPACE | 6 NEWS.md | 10 + R/tidyfeed.R | 342 +++++++++++++++++++++++++++++++++----------------- R/zzz.R |only README.md | 46 ++++++ inst/doc/tidyrss.R | 4 inst/doc/tidyrss.Rmd | 9 - inst/doc/tidyrss.html | 14 +- man/tidyfeed.Rd | 20 ++ vignettes/tidyrss.Rmd | 9 - 12 files changed, 344 insertions(+), 150 deletions(-)
Title: A R Convenience Layer for CouchDB 2.0
Description: Provides a collection of functions for basic
database and document management operations such as add, get, list access
or delete. Every cdbFunction() gets and returns a list() containing the
connection setup. Such a list can be generated by cdbIni().
Author: Thomas Bock
Maintainer: Thomas Bock <thsteinbock@web.de>
Diff between R4CouchDB versions 0.7.1 dated 2015-02-16 and 0.7.5 dated 2017-03-01
DESCRIPTION | 19 ++++++++----------- LICENSE | 2 +- MD5 | 38 ++++++++++++++++++++------------------ NAMESPACE | 1 + R/cdbAddAttachment.R | 3 ++- R/cdbAddDoc.R | 5 +++-- R/cdbAddDocS.R | 4 +++- R/cdbDeleteDoc.R | 3 ++- R/cdbGetConfig.R | 4 +++- R/cdbGetDoc.R | 7 ++++--- R/cdbGetList.R | 9 ++++++--- R/cdbGetShow.R |only R/cdbGetView.R | 3 ++- R/cdbIni.R | 38 +++++++++++++++++++++++++++++--------- R/cdbListDB.R | 4 +++- R/cdbMakeDB.R | 4 +++- R/cdbRemoveDB.R | 4 +++- R/cdbUpdateDoc.R | 5 +++-- man/cdbGetList.Rd | 5 +++-- man/cdbGetShow.Rd |only man/cdbIni.Rd | 7 +++++-- 21 files changed, 104 insertions(+), 61 deletions(-)
Title: Tidy, Type-Safe 'prediction()' Methods
Description: A one-function package containing 'prediction()', a type-safe alternative to 'predict()' that always returns a data frame.
Author: Thomas J. Leeper [aut, cre],
Carl Ganz [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between prediction versions 0.1.1 dated 2016-10-30 and 0.1.10 dated 2017-03-01
prediction-0.1.1/prediction/R/margins-package.R |only prediction-0.1.1/prediction/R/prediction_methods.R |only prediction-0.1.10/prediction/DESCRIPTION | 26 +- prediction-0.1.10/prediction/MD5 | 54 ++++- prediction-0.1.10/prediction/NAMESPACE | 30 +++ prediction-0.1.10/prediction/NEWS.md | 46 ++++ prediction-0.1.10/prediction/R/build_datalist.R |only prediction-0.1.10/prediction/R/find_data.R | 40 ++++ prediction-0.1.10/prediction/R/mean_or_mode.R |only prediction-0.1.10/prediction/R/prediction-package.R |only prediction-0.1.10/prediction/R/prediction.R | 65 ++++++ prediction-0.1.10/prediction/R/prediction_Arima.R |only prediction-0.1.10/prediction/R/prediction_ar.R |only prediction-0.1.10/prediction/R/prediction_betareg.R |only prediction-0.1.10/prediction/R/prediction_clm.R |only prediction-0.1.10/prediction/R/prediction_coxph.R |only prediction-0.1.10/prediction/R/prediction_crch.R |only prediction-0.1.10/prediction/R/prediction_gam.R |only prediction-0.1.10/prediction/R/prediction_glm.R |only prediction-0.1.10/prediction/R/prediction_glmx.R |only prediction-0.1.10/prediction/R/prediction_gls.R |only prediction-0.1.10/prediction/R/prediction_hetglm.R |only prediction-0.1.10/prediction/R/prediction_hxlr.R |only prediction-0.1.10/prediction/R/prediction_ivreg.R |only prediction-0.1.10/prediction/R/prediction_lm.R |only prediction-0.1.10/prediction/R/prediction_loess.R |only prediction-0.1.10/prediction/R/prediction_merMod.R |only prediction-0.1.10/prediction/R/prediction_mlogit.R |only prediction-0.1.10/prediction/R/prediction_nls.R |only prediction-0.1.10/prediction/R/prediction_nnet.R |only prediction-0.1.10/prediction/R/prediction_polr.R |only prediction-0.1.10/prediction/R/prediction_rq.R |only prediction-0.1.10/prediction/R/prediction_selection.R |only prediction-0.1.10/prediction/R/prediction_survreg.R |only prediction-0.1.10/prediction/R/prediction_svm.R |only prediction-0.1.10/prediction/R/prediction_svyglm.R |only prediction-0.1.10/prediction/R/seq_range.R |only prediction-0.1.10/prediction/README.md | 60 +++--- prediction-0.1.10/prediction/man/build_datalist.Rd |only prediction-0.1.10/prediction/man/find_data.Rd | 28 ++- prediction-0.1.10/prediction/man/mean_or_mode.Rd |only prediction-0.1.10/prediction/man/prediction-package.Rd | 12 - prediction-0.1.10/prediction/man/prediction.Rd | 140 ++++++++++++--- prediction-0.1.10/prediction/man/seq_range.Rd |only prediction-0.1.10/prediction/tests/testthat/tests-core.R | 20 ++ 45 files changed, 434 insertions(+), 87 deletions(-)
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for working with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Daniel C. Reuman [ctb],
Helen Wearing [ctb],
Simon N. Wood [ctb],
Sebastian Funk [ctb],
Steven G. Johnson [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 1.10 dated 2016-11-22 and 1.11 dated 2017-03-01
pomp-1.10/pomp/src/R_init_pomp.c |only pomp-1.10/pomp/src/SSA_simulator.c |only pomp-1.11/pomp/DESCRIPTION | 8 pomp-1.11/pomp/MD5 | 73 - pomp-1.11/pomp/NAMESPACE | 34 pomp-1.11/pomp/R/abc.R | 4 pomp-1.11/pomp/R/bake.R | 25 pomp-1.11/pomp/R/bsmc.R | 4 pomp-1.11/pomp/R/bsmc2.R | 4 pomp-1.11/pomp/R/builder.R | 60 - pomp-1.11/pomp/R/load.R | 10 pomp-1.11/pomp/R/mif.R | 8 pomp-1.11/pomp/R/mif2.R | 4 pomp-1.11/pomp/R/minim.R | 17 pomp-1.11/pomp/R/nlf.R | 4 pomp-1.11/pomp/R/pfilter.R | 12 pomp-1.11/pomp/R/pmcmc.R | 4 pomp-1.11/pomp/R/pomp.R | 1373 +++++++++++++++---------------- pomp-1.11/pomp/R/probe_match.R | 34 pomp-1.11/pomp/R/simulate_pomp.R | 20 pomp-1.11/pomp/R/sobol.R | 2 pomp-1.11/pomp/R/spect_match.R | 4 pomp-1.11/pomp/build/partial.rdb |binary pomp-1.11/pomp/inst/NEWS | 17 pomp-1.11/pomp/inst/NEWS.Rd | 11 pomp-1.11/pomp/inst/examples/blowflies.R | 31 pomp-1.11/pomp/inst/examples/ou2.R | 10 pomp-1.11/pomp/man/abc.Rd | 4 pomp-1.11/pomp/man/bake.Rd | 6 pomp-1.11/pomp/man/pomp.Rd | 23 pomp-1.11/pomp/man/proposals.Rd | 16 pomp-1.11/pomp/src/eulermultinom.c | 4 pomp-1.11/pomp/src/init.c |only pomp-1.11/pomp/src/ou2.c | 126 +- pomp-1.11/pomp/src/pomp_internal.h | 205 +++- pomp-1.11/pomp/src/sobolseq.c | 4 pomp-1.11/pomp/src/ssa.c | 221 ++++ pomp-1.11/pomp/src/synth_lik.c | 4 pomp-1.11/pomp/src/trajectory.c | 24 39 files changed, 1344 insertions(+), 1066 deletions(-)
Title: Improved Predictors
Description: Improved predictive models by indirect classification and
bagging for classification, regression and survival problems
as well as resampling based estimators of prediction error.
Author: Andrea Peters [aut],
Torsten Hothorn [aut, cre],
Brian D. Ripley [ctb],
Terry Therneau [ctb],
Beth Atkinson [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between ipred versions 0.9-5 dated 2015-07-28 and 0.9-6 dated 2017-03-01
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- NAMESPACE | 2 +- R/csurv.R | 4 ++-- build/vignette.rds |binary inst/NEWS | 4 ++++ inst/doc/ipred-examples.pdf |binary src/init.c |only tests/Examples/ipred-Ex.Rout.save | 7 +++---- 9 files changed, 22 insertions(+), 18 deletions(-)
Title: Exact Distributions for Rank and Permutation Tests
Description: Computes exact conditional p-values and quantiles using an
implementation of the Shift-Algorithm by Streitberg & Roehmel.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between exactRankTests versions 0.8-28 dated 2015-02-20 and 0.8-29 dated 2017-03-01
exactRankTests-0.8-28/exactRankTests/src/ansari.c |only exactRankTests-0.8-29/exactRankTests/DESCRIPTION | 10 +- exactRankTests-0.8-29/exactRankTests/MD5 | 46 ++++----- exactRankTests-0.8-29/exactRankTests/NAMESPACE | 2 exactRankTests-0.8-29/exactRankTests/R/cscores.R | 6 - exactRankTests-0.8-29/exactRankTests/R/dpqperm.R | 16 +-- exactRankTests-0.8-29/exactRankTests/R/perm.test.R | 12 +- exactRankTests-0.8-29/exactRankTests/R/zzz.R | 7 - exactRankTests-0.8-29/exactRankTests/data/ASAT.rda |binary exactRankTests-0.8-29/exactRankTests/data/bloodp.rda |binary exactRankTests-0.8-29/exactRankTests/data/ears.rda |binary exactRankTests-0.8-29/exactRankTests/data/glioma.rda |binary exactRankTests-0.8-29/exactRankTests/data/globulin.rda |binary exactRankTests-0.8-29/exactRankTests/data/lungcancer.rda |binary exactRankTests-0.8-29/exactRankTests/data/neuropathy.rda |binary exactRankTests-0.8-29/exactRankTests/data/ocarcinoma.rda |binary exactRankTests-0.8-29/exactRankTests/data/rotarod.rda |binary exactRankTests-0.8-29/exactRankTests/data/sal.rda |binary exactRankTests-0.8-29/exactRankTests/inst/NEWS | 4 exactRankTests-0.8-29/exactRankTests/man/cscores.Rd | 7 - exactRankTests-0.8-29/exactRankTests/man/dperm.Rd | 9 - exactRankTests-0.8-29/exactRankTests/src/init.c |only exactRankTests-0.8-29/exactRankTests/src/irank.c | 2 exactRankTests-0.8-29/exactRankTests/tests/dtest.R | 7 - exactRankTests-0.8-29/exactRankTests/tests/dtest.Rout.save | 65 ++++++------- 25 files changed, 93 insertions(+), 100 deletions(-)
More information about exactRankTests at CRAN
Permanent link
Title: Load Environment Variables from '.env'
Description: Load configuration from a '.env' file, that is
in the current working directory, into environment variables.
Author: Gábor Csárdi [aut, cre, cph]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between dotenv versions 1.0.1 dated 2016-04-07 and 1.0.2 dated 2017-03-01
dotenv-1.0.1/dotenv/README.md |only dotenv-1.0.1/dotenv/vignettes |only dotenv-1.0.2/dotenv/DESCRIPTION | 13 +++++++------ dotenv-1.0.2/dotenv/LICENSE | 2 +- dotenv-1.0.2/dotenv/MD5 | 7 +++---- dotenv-1.0.2/dotenv/inst |only 6 files changed, 11 insertions(+), 11 deletions(-)
Title: Debug R Packages
Description: Specify debug messages as special string constants, and
control debugging of packages via environment variables.
Author: Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between debugme versions 1.0.1 dated 2016-11-01 and 1.0.2 dated 2017-03-01
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 5 +++++ R/instrument.R | 9 ++++----- R/package.R | 4 ++-- tests/testthat/test-colors.R | 20 +++++++------------- tests/testthat/test-package.R | 16 ++++++---------- 7 files changed, 34 insertions(+), 40 deletions(-)
Title: High Performance CommonMark and Github Markdown Rendering in R
Description: The CommonMark specification defines a rationalized version of markdown
syntax. This package uses the 'cmark' reference implementation for converting
markdown text into various formats including html, latex and groff man. In
addition it exposes the markdown parse tree in xml format. The latest version of
this package also adds support for Github extensions including tables, autolinks
and strikethrough text.
Author: Jeroen Ooms [aut, cre],
John MacFarlane [cph] (Author of cmark)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between commonmark versions 1.1 dated 2016-12-13 and 1.2 dated 2017-03-01
DESCRIPTION | 12 - LICENSE | 2 MD5 | 51 +++--- NEWS | 4 man/commonmark.Rd | 1 man/extensions.Rd | 1 src/cmark/arena.c | 2 src/cmark/blocks.c | 20 +- src/cmark/cmark_extension_api.h | 28 +++ src/cmark/commonmark.c | 12 - src/cmark/inlines.c | 79 +++------ src/cmark/latex.c | 12 - src/cmark/main.c | 5 src/cmark/man.c | 7 src/cmark/node.c | 3 src/cmark/render.c | 8 - src/cmark/render.h | 7 src/cmark/syntax_extension.c | 10 + src/cmark/syntax_extension.h | 2 src/config.h | 5 src/extensions.c | 2 src/extensions/autolink.c | 253 +++++++++++++++++++------------- src/extensions/cmarkextensions_export.h |only src/extensions/core-extensions.h | 2 src/extensions/strikethrough.c | 25 +-- src/extensions/table.c | 106 +++++++------ src/wrapper.c | 2 27 files changed, 386 insertions(+), 275 deletions(-)
Title: Infrastructure for Computing with Basis Functions
Description: Some very simple infrastructure for basis functions.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between basefun versions 0.0-35 dated 2017-02-14 and 0.0-36 dated 2017-03-01
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NAMESPACE | 2 +- R/legendre.R | 2 +- R/utils.R | 8 ++++---- inst/NEWS.Rd | 7 +++++++ src/init.c |only tests/Bernstein-Ex.R | 4 ++-- 8 files changed, 26 insertions(+), 18 deletions(-)
Title: TraMineR Extension
Description: Collection of ancillary functions and utilities to be used in conjunction with the 'TraMineR' package for sequence data exploration. Most of the functions are in test phase, lack systematic consistency check of the arguments and are subject to changes. Once fully checked, some of the functions of this collection could be included in a next release of 'TraMineR'.
Author: Gilbert Ritschard [aut, cre, ths, cph],
Matthias Studer [aut],
Reto Buergin [aut],
Alexis Gabadinho [ctb],
Nicolas Muller [ctb],
Patrick Rousset [ctb]
Maintainer: Gilbert Ritschard <gilbert.ritschard@unige.ch>
Diff between TraMineRextras versions 0.2.5 dated 2016-11-10 and 0.2.6 dated 2017-03-01
TraMineRextras-0.2.5/TraMineRextras/R/ctplot.R |only TraMineRextras-0.2.5/TraMineRextras/man/ctplot.Rd |only TraMineRextras-0.2.6/TraMineRextras/DESCRIPTION | 12 ++--- TraMineRextras-0.2.6/TraMineRextras/MD5 | 14 ++---- TraMineRextras-0.2.6/TraMineRextras/NAMESPACE | 1 TraMineRextras-0.2.6/TraMineRextras/inst/NEWS | 11 ++++ TraMineRextras-0.2.6/TraMineRextras/inst/NEWS.Rd | 8 +++ TraMineRextras-0.2.6/TraMineRextras/man/TraMineRextras-package.Rd | 14 +++--- TraMineRextras-0.2.6/TraMineRextras/src/seqstart.cpp | 23 ++++++++++ 9 files changed, 60 insertions(+), 23 deletions(-)
More information about TraMineRextras at CRAN
Permanent link
Title: Random Effects Latent Class Analysis
Description: Fits standard and random effects latent class models. The single level random effects model is described in Qu et al <doi:10.2307/2533043> and the two level random effects model in Beath and Heller <doi:10.1177/1471082X0800900302>. Examples are given for their use in diagnostic testing.
Author: Ken Beath [aut, cre]
Maintainer: Ken Beath <ken.beath@mq.edu.au>
Diff between randomLCA versions 1.0-10 dated 2016-08-09 and 1.0-11 dated 2017-03-01
randomLCA-1.0-10/randomLCA/inst/doc/randomLCA-example.Rnw |only randomLCA-1.0-10/randomLCA/inst/doc/randomLCA-example.pdf |only randomLCA-1.0-10/randomLCA/vignettes/randomLCA-example-010.pdf |only randomLCA-1.0-10/randomLCA/vignettes/randomLCA-example-014.pdf |only randomLCA-1.0-10/randomLCA/vignettes/randomLCA-example-015.pdf |only randomLCA-1.0-10/randomLCA/vignettes/randomLCA-example-022.pdf |only randomLCA-1.0-10/randomLCA/vignettes/randomLCA-example-026.pdf |only randomLCA-1.0-10/randomLCA/vignettes/randomLCA-example.Rnw |only randomLCA-1.0-10/randomLCA/vignettes/randomLCA-example.tex |only randomLCA-1.0-10/randomLCA/vignettes/randomLCA-exampleTex.tex |only randomLCA-1.0-10/randomLCA/vignettes/randomLCA.bib |only randomLCA-1.0-11/randomLCA/DESCRIPTION | 11 +-- randomLCA-1.0-11/randomLCA/MD5 | 25 ++----- randomLCA-1.0-11/randomLCA/NAMESPACE | 3 randomLCA-1.0-11/randomLCA/R/fitAdaptRandom2.R | 33 ---------- randomLCA-1.0-11/randomLCA/build/vignette.rds |binary randomLCA-1.0-11/randomLCA/inst/NEWS | 6 + randomLCA-1.0-11/randomLCA/inst/doc/randomLCA-package.pdf |only randomLCA-1.0-11/randomLCA/inst/doc/randomLCA-package.pdf.asis |only randomLCA-1.0-11/randomLCA/src/init.c |only randomLCA-1.0-11/randomLCA/vignettes/randomLCA-package.pdf.asis |only 21 files changed, 25 insertions(+), 53 deletions(-)
Title: Sensitivity Indexes Calculated from Polynomial Chaos Expansions
Description: Computation of sensitivity indexes by using a method based on a truncated Polynomial Chaos Expansions of the response.
The necessary condition of the method is: the inputs must be uniformly and independently sampled. Since the inputs are uniformly distributed, the truncated Polynomial Chaos Expansion is built from the multivariate Legendre orthogonal polynomials.
Author: A. Bouvier [aut], J.-P. Gauchi [cre], A. Bensadoun [aut]
Maintainer: Annie Bouvier <annie.bouvier@inra.fr>
Diff between polychaosbasics versions 1.1-0 dated 2016-03-11 and 1.1-1 dated 2017-03-01
DESCRIPTION | 12 +++++++----- MD5 | 29 +++++++++++++++-------------- NEWS |only R/PCESI.R | 23 +++++++++++++++++++++++ R/PCEdesign-class.R | 23 +++++++++++++++++++++++ R/PCEfit-class.R | 23 +++++++++++++++++++++++ R/UtilPolychaos.R | 24 +++++++++++++++++++++++- R/analyticsPolyLeg.R | 23 +++++++++++++++++++++++ R/generic.R | 23 +++++++++++++++++++++++ R/polyLeg.R | 23 +++++++++++++++++++++++ build/partial.rdb |binary inst/doc/UserGuide.pdf |binary man/analyticsPolyLeg.Rd | 2 +- man/polychaosbasics-package.Rd | 9 ++++----- tests/Ishigami.R | 2 +- tests/Ishigami.Rout.save | 4 ++-- 16 files changed, 191 insertions(+), 29 deletions(-)
More information about polychaosbasics at CRAN
Permanent link
Title: Sensitivity Indexes from Polynomial Chaos Expansions and PLS
Description: Computation of sensitivity indexes by using a method based on a truncated Polynomial Chaos Expansion of the response and regression PLS, for computer models with correlated continuous inputs, whatever the input distribution. The truncated Polynomial Chaos Expansion is built from the multivariate Legendre orthogonal polynomials.
The number of runs (rows) can be smaller than the number of monomials. It is possible to select only the most significant monomials.
Of course, this package can also be used if the inputs are independent. Note that, when they are independent and uniformly distributed, the package 'polychaosbasics' is more appropriate.
Author: A. Bouvier [aut], J.-P. Gauchi [cre], A. Bensadoun [ctb]
Maintainer: Annie Bouvier <annie.bouvier@inra.fr>
Diff between plspolychaos versions 1.1-0 dated 2016-05-09 and 1.1-1 dated 2017-03-01
plspolychaos-1.1-0/plspolychaos/src/boucleregpls.c |only plspolychaos-1.1-0/plspolychaos/src/forward.c |only plspolychaos-1.1-1/plspolychaos/DESCRIPTION | 12 ++- plspolychaos-1.1-1/plspolychaos/MD5 | 39 ++++++------ plspolychaos-1.1-1/plspolychaos/NAMESPACE | 2 plspolychaos-1.1-1/plspolychaos/NEWS |only plspolychaos-1.1-1/plspolychaos/R/PCEdesign-class.R | 23 +++++++ plspolychaos-1.1-1/plspolychaos/R/PCEpoly-class.R | 23 +++++++ plspolychaos-1.1-1/plspolychaos/R/PLSPCE-class.R | 23 +++++++ plspolychaos-1.1-1/plspolychaos/R/UtilPolychaos.R | 23 +++++++ plspolychaos-1.1-1/plspolychaos/R/analyticsPolyLeg.R | 23 +++++++ plspolychaos-1.1-1/plspolychaos/R/calcPLSPCE.R | 24 +++++++ plspolychaos-1.1-1/plspolychaos/R/forward.R | 23 +++++++ plspolychaos-1.1-1/plspolychaos/R/generic.R | 23 +++++++ plspolychaos-1.1-1/plspolychaos/R/polyLeg.R | 23 +++++++ plspolychaos-1.1-1/plspolychaos/R/regpls2.R | 2 plspolychaos-1.1-1/plspolychaos/build/partial.rdb |binary plspolychaos-1.1-1/plspolychaos/inst/doc/index.html | 5 - plspolychaos-1.1-1/plspolychaos/inst/doc/plant.pdf |only plspolychaos-1.1-1/plspolychaos/man/analyticsPolyLeg.Rd | 2 plspolychaos-1.1-1/plspolychaos/man/plspolychaos-package.Rd | 11 +-- plspolychaos-1.1-1/plspolychaos/src/boucle.c |only plspolychaos-1.1-1/plspolychaos/src/boucle.h |only plspolychaos-1.1-1/plspolychaos/src/plspolychaos.c |only 24 files changed, 247 insertions(+), 34 deletions(-)
Title: Piecewise Exponential Model for Time to Progression and Time
from Progression to Death
Description: Estimates parameters of a piecewise exponential model for time to progression and time from progression to death with interval censoring of the time to progression and covariates for each distribution using proportional hazards.
Author: David A. Schoenfeld [aut, cre]
Maintainer: David A. Schoenfeld <dschoenfeld@partners.org>
Diff between pssm versions 1.0 dated 2015-04-06 and 1.1 dated 2017-03-01
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 3 +++ R/pssm.R | 4 ++-- R/pssm.noninferiority.boundary.R | 9 +++++++-- man/pssm-class.Rd | 2 +- man/pssm.Rd | 3 ++- 7 files changed, 25 insertions(+), 16 deletions(-)
Title: Adding Progress Bar to '*apply' Functions
Description: A lightweight package that adds
progress bar to vectorized R functions
('*apply'). The implementation can easily be added
to functions where showing the progress is
useful (e.g. bootstrap). The type and style of the
progress bar (with percentages or remaining time)
can be set through options.
Supports several parallel processing backends.
Author: Peter Solymos [aut, cre], Zygmunt Zawadzki [aut]
Maintainer: Peter Solymos <solymos@ualberta.ca>
Diff between pbapply versions 1.3-1 dated 2016-10-31 and 1.3-2 dated 2017-03-01
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/pblapply.R | 18 ++++++++++++------ R/timerProgressBar.R | 2 ++ R/unix/dopb.R | 2 ++ R/windows/dopb.R | 2 ++ man/pbapply.Rd | 3 ++- man/timerProgressBar.Rd | 8 +++++++- 8 files changed, 39 insertions(+), 20 deletions(-)
Title: Estimates of Coefficient of Overlapping for Animal Activity
Patterns
Description: Provides functions to fit kernel density functions to
data on temporal activity patterns of animals; estimate coefficients
of overlapping of densities for two species; and calculate bootstrap
estimates of confidence intervals.
Author: Mike Meredith and Martin Ridout
Maintainer: Mike Meredith <mmeredith@wcs.org>
Diff between overlap versions 0.2.6 dated 2016-02-14 and 0.2.7 dated 2017-03-01
DESCRIPTION | 9 +++++---- MD5 | 15 ++++++++------- NAMESPACE | 3 ++- NEWS | 6 +++++- R/densityFit.R | 2 +- build/vignette.rds |binary data/simulatedData.rda |binary inst/doc/overlap.pdf |binary src/init.c |only 9 files changed, 21 insertions(+), 14 deletions(-)
Title: Multivariate Data Analysis Laboratory
Description: An open-source implementation of latent variable methods and multivariate modeling tools. The focus is on exploratory analyses using dimensionality reduction methods including low dimensional embedding, classical multivariate statistical tools , and tools for enhanced interpretation of machine learning methods (i.e. intelligible models to provide important information for end-users). Target domains include extension to dedicated applications e.g. for manufacturing process modeling, spectroscopic analyses, and data mining.
Author: Nelson Lee Afanador, Thanh Tran, Lionel Blanchet, and Richard Baumgartner
Maintainer: Nelson Lee Afanador <nelson.afanador@mvdalab.com>
Diff between mvdalab versions 1.1 dated 2016-07-09 and 1.2 dated 2017-03-01
DESCRIPTION | 12 - MD5 | 170 +++++++++++++------------ NAMESPACE | 103 +++++++-------- NEWS.md | 44 +++--- R/BiPlot.R | 23 +-- R/PE.R | 116 +++++++++-------- R/ScoreContrib.R | 33 ++-- R/T2.R | 72 ++++++---- R/Xresids.R | 62 +++++---- R/XresidualContrib.R | 54 ++++---- R/acfplot.R | 54 ++++---- R/ap.plot.R | 44 +++--- R/bidiagpls.fit.R | 264 ++++++++++++++++++++------------------- R/coefficientsplot2D.R | 68 +++++----- R/coefsplot.R | 76 +++++------ R/ellipse.mvdalab.R | 49 +++---- R/imputeEM.R | 182 +++++++++++++-------------- R/jk.after.boot.R | 39 ++--- R/loadingsplot.R | 114 ++++++++--------- R/loadingsplot2D.R | 64 ++++----- R/mewma.R | 129 ++++++++++--------- R/mvdaboot.R | 50 +++---- R/mvdaloo.R | 22 +-- R/pcaFit.R | 122 ++++++++++-------- R/plot.R2s.R | 128 +++++++++---------- R/plot.cp.R | 38 ++--- R/plot.mvcomp.R | 82 ++++++------ R/plot.mvdapca.R | 38 +++-- R/plot.plusminus.R | 74 +++++------ R/plot.vip.R | 62 ++++----- R/plot.wrtpls.R |only R/plsFit.R | 63 +++++---- R/print.empca.R | 56 ++++---- R/print.mvdapca.R | 31 ++-- R/print.mvdareg.R | 8 - R/scoresplot.R | 93 +++++++------- R/smc.R | 34 ++--- R/sr.R | 27 +--- R/summary.mvdareg.R | 285 +++++++++++++++++++++---------------------- R/vip.R | 10 - R/weightsplot.R | 76 +++++------ R/weightsplot2D.R | 70 +++++----- R/wrtpls.fit.R |only man/BiPlot.Rd | 135 ++++++++++---------- man/PE.Rd | 21 ++- man/R2s.Rd | 48 +++---- man/ScoreContrib.Rd | 35 +++-- man/T2.Rd | 63 ++++----- man/Xresids.Rd | 12 + man/XresidualContrib.Rd | 76 +++++------ man/acfplot.Rd | 54 ++++---- man/ap.plot.Rd | 11 - man/bca.cis.Rd | 14 +- man/bidiagpls.fit.Rd | 9 - man/boot.plots.Rd | 60 ++++----- man/coef.mvdareg.Rd | 76 +++++------ man/coefficients.Rd | 86 ++++++------ man/coefficients.boots.Rd | 94 +++++++------- man/coefficientsplot2D.Rd | 51 +++---- man/coefsplot.Rd | 57 ++++---- man/ellipse.mvdalab.Rd | 13 + man/jk.after.boot.Rd | 82 ++++++------ man/loadings.Rd | 104 +++++++-------- man/loadings.boots.Rd | 86 ++++++------ man/loadingsplot.Rd | 53 ++++--- man/loadingsplot2D.Rd | 23 ++- man/mvdalab-package-title.Rd | 6 man/pcaFit.Rd | 14 +- man/plot.R2s.Rd | 57 ++++---- man/plot.cp.Rd | 20 ++- man/plot.mvdareg.Rd | 14 +- man/plot.plusminus.Rd | 58 ++++---- man/plot.vip.Rd | 32 +++- man/plot.wrtpls.Rd |only man/plsFit.Rd | 233 +++++++++++++++++++---------------- man/plusminus.loo.Rd | 79 ++++++----- man/plusminusFit.Rd | 129 ++++++++++--------- man/predict.mvdareg.Rd | 82 ++++++------ man/print.plusminus.Rd | 42 +++--- man/scoresplot.Rd | 49 +++---- man/smc.Rd | 104 ++++++++------- man/sr.Rd | 92 +++++++------ man/vip.Rd | 100 +++++++-------- man/weight.boots.Rd | 82 ++++++------ man/weights.Rd | 92 ++++++------- man/weightsplot.Rd | 55 ++++---- man/weightsplot2D.Rd | 48 +++---- man/wrtpls.fit.Rd |only 88 files changed, 3014 insertions(+), 2778 deletions(-)
Title: Fast and Simple 'MongoDB' Client for R
Description: High-performance 'MongoDB' client based on 'libmongoc' and 'jsonlite'.
Includes support for aggregation, indexing, map-reduce, streaming, encryption,
enterprise authentication. The online user manual provides an overview of the
available methods in the package: <https://jeroenooms.github.io/mongolite/>.
Author: Jeroen Ooms [aut, cre],
MongoDB, Inc [cph] (Author of mongo-c-driver)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between mongolite versions 0.9.1 dated 2016-10-04 and 1.0 dated 2017-03-01
mongolite-0.9.1/mongolite/R/loglevel.R |only mongolite-0.9.1/mongolite/R/object.R |only mongolite-0.9.1/mongolite/build |only mongolite-0.9.1/mongolite/inst/doc |only mongolite-0.9.1/mongolite/man/mongo_log_level.Rd |only mongolite-0.9.1/mongolite/src/mongoc/mongoc-metadata-os-private.h |only mongolite-0.9.1/mongolite/src/mongoc/mongoc-metadata-private.h |only mongolite-0.9.1/mongolite/src/mongoc/mongoc-metadata.c |only mongolite-0.9.1/mongolite/src/mongoc/mongoc-metadata.h |only mongolite-0.9.1/mongolite/src/mongoc/mongoc-trace.h |only mongolite-0.9.1/mongolite/src/yajl |only mongolite-0.9.1/mongolite/vignettes |only mongolite-1.0/mongolite/DESCRIPTION | 29 mongolite-1.0/mongolite/MD5 | 590 +-- mongolite-1.0/mongolite/NAMESPACE | 5 mongolite-1.0/mongolite/NEWS | 3 mongolite-1.0/mongolite/R/client.R |only mongolite-1.0/mongolite/R/hex.R |only mongolite-1.0/mongolite/R/mongo.R | 490 +-- mongolite-1.0/mongolite/R/options.R |only mongolite-1.0/mongolite/R/ssl.R | 17 mongolite-1.0/mongolite/R/stream.R | 6 mongolite-1.0/mongolite/cleanup |only mongolite-1.0/mongolite/man/mongo.Rd | 45 mongolite-1.0/mongolite/man/mongo_options.Rd |only mongolite-1.0/mongolite/man/ssl_options.Rd | 14 mongolite-1.0/mongolite/src/Makevars.in | 29 mongolite-1.0/mongolite/src/Makevars.win | 37 mongolite-1.0/mongolite/src/bson.c | 62 mongolite-1.0/mongolite/src/bson/b64_ntop.h | 11 mongolite-1.0/mongolite/src/bson/b64_pton.h | 462 +- mongolite-1.0/mongolite/src/bson/bcon.c | 361 +- mongolite-1.0/mongolite/src/bson/bcon.h | 252 - mongolite-1.0/mongolite/src/bson/bson-atomic.c | 6 mongolite-1.0/mongolite/src/bson/bson-atomic.h | 95 mongolite-1.0/mongolite/src/bson/bson-clock.c | 42 mongolite-1.0/mongolite/src/bson/bson-clock.h | 10 mongolite-1.0/mongolite/src/bson/bson-compat.h | 156 mongolite-1.0/mongolite/src/bson/bson-context-private.h | 25 mongolite-1.0/mongolite/src/bson/bson-context.c | 50 mongolite-1.0/mongolite/src/bson/bson-context.h | 13 mongolite-1.0/mongolite/src/bson/bson-decimal128.c | 187 - mongolite-1.0/mongolite/src/bson/bson-decimal128.h | 38 mongolite-1.0/mongolite/src/bson/bson-endian.h | 136 mongolite-1.0/mongolite/src/bson/bson-error.c | 23 mongolite-1.0/mongolite/src/bson/bson-error.h | 18 mongolite-1.0/mongolite/src/bson/bson-iso8601-private.h | 7 mongolite-1.0/mongolite/src/bson/bson-iso8601.c | 151 mongolite-1.0/mongolite/src/bson/bson-iter.c | 813 ++--- mongolite-1.0/mongolite/src/bson/bson-iter.h | 245 - mongolite-1.0/mongolite/src/bson/bson-json.c | 1581 ++++++---- mongolite-1.0/mongolite/src/bson/bson-json.h | 53 mongolite-1.0/mongolite/src/bson/bson-keys.c | 199 - mongolite-1.0/mongolite/src/bson/bson-keys.h | 9 mongolite-1.0/mongolite/src/bson/bson-macros.h | 197 - mongolite-1.0/mongolite/src/bson/bson-md5.c | 461 +- mongolite-1.0/mongolite/src/bson/bson-md5.h | 21 mongolite-1.0/mongolite/src/bson/bson-memory.c | 32 mongolite-1.0/mongolite/src/bson/bson-memory.h | 51 mongolite-1.0/mongolite/src/bson/bson-oid.c | 158 mongolite-1.0/mongolite/src/bson/bson-oid.h | 58 mongolite-1.0/mongolite/src/bson/bson-private.h | 55 mongolite-1.0/mongolite/src/bson/bson-reader.c | 167 - mongolite-1.0/mongolite/src/bson/bson-reader.h | 49 mongolite-1.0/mongolite/src/bson/bson-stdint-win32.h | 234 - mongolite-1.0/mongolite/src/bson/bson-stdint.h | 2 mongolite-1.0/mongolite/src/bson/bson-string.c | 322 -- mongolite-1.0/mongolite/src/bson/bson-string.h | 88 mongolite-1.0/mongolite/src/bson/bson-thread-private.h | 71 mongolite-1.0/mongolite/src/bson/bson-timegm-private.h | 19 mongolite-1.0/mongolite/src/bson/bson-timegm.c | 1269 +++----- mongolite-1.0/mongolite/src/bson/bson-types.h | 365 +- mongolite-1.0/mongolite/src/bson/bson-utf8.c | 41 mongolite-1.0/mongolite/src/bson/bson-utf8.h | 24 mongolite-1.0/mongolite/src/bson/bson-value.c | 34 mongolite-1.0/mongolite/src/bson/bson-value.h | 7 mongolite-1.0/mongolite/src/bson/bson-version-functions.c | 6 mongolite-1.0/mongolite/src/bson/bson-version-functions.h | 19 mongolite-1.0/mongolite/src/bson/bson-version.h | 8 mongolite-1.0/mongolite/src/bson/bson-writer.c | 36 mongolite-1.0/mongolite/src/bson/bson-writer.h | 27 mongolite-1.0/mongolite/src/bson/bson.c | 1409 ++++---- mongolite-1.0/mongolite/src/bson/bson.h | 475 +-- mongolite-1.0/mongolite/src/client.c | 20 mongolite-1.0/mongolite/src/collection.c | 18 mongolite-1.0/mongolite/src/hex.c |only mongolite-1.0/mongolite/src/jsonsl |only mongolite-1.0/mongolite/src/mongo_log.c | 2 mongolite-1.0/mongolite/src/mongoc/mongoc-apm-private.h | 203 - mongolite-1.0/mongolite/src/mongoc/mongoc-apm.c | 392 ++ mongolite-1.0/mongolite/src/mongoc/mongoc-apm.h | 353 +- mongolite-1.0/mongolite/src/mongoc/mongoc-array-private.h | 37 mongolite-1.0/mongolite/src/mongoc/mongoc-array.c | 24 mongolite-1.0/mongolite/src/mongoc/mongoc-async-cmd-private.h | 70 mongolite-1.0/mongolite/src/mongoc/mongoc-async-cmd.c | 149 mongolite-1.0/mongolite/src/mongoc/mongoc-async-private.h | 56 mongolite-1.0/mongolite/src/mongoc/mongoc-async.c | 138 mongolite-1.0/mongolite/src/mongoc/mongoc-b64-private.h | 12 mongolite-1.0/mongolite/src/mongoc/mongoc-b64.c | 471 +- mongolite-1.0/mongolite/src/mongoc/mongoc-buffer-private.h | 50 mongolite-1.0/mongolite/src/mongoc/mongoc-buffer.c | 89 mongolite-1.0/mongolite/src/mongoc/mongoc-bulk-operation-private.h | 36 mongolite-1.0/mongolite/src/mongoc/mongoc-bulk-operation.c | 571 ++- mongolite-1.0/mongolite/src/mongoc/mongoc-bulk-operation.h | 133 mongolite-1.0/mongolite/src/mongoc/mongoc-client-pool-private.h | 15 mongolite-1.0/mongolite/src/mongoc/mongoc-client-pool.c | 226 - mongolite-1.0/mongolite/src/mongoc/mongoc-client-pool.h | 55 mongolite-1.0/mongolite/src/mongoc/mongoc-client-private.h | 114 mongolite-1.0/mongolite/src/mongoc/mongoc-client.c | 958 +++--- mongolite-1.0/mongolite/src/mongoc/mongoc-client.h | 234 - mongolite-1.0/mongolite/src/mongoc/mongoc-cluster-private.h | 93 mongolite-1.0/mongolite/src/mongoc/mongoc-cluster-sasl-private.h |only mongolite-1.0/mongolite/src/mongoc/mongoc-cluster-sasl.c |only mongolite-1.0/mongolite/src/mongoc/mongoc-cluster-sspi-private.h |only mongolite-1.0/mongolite/src/mongoc/mongoc-cluster-sspi.c |only mongolite-1.0/mongolite/src/mongoc/mongoc-cluster.c | 1308 +++----- mongolite-1.0/mongolite/src/mongoc/mongoc-collection-private.h | 43 mongolite-1.0/mongolite/src/mongoc/mongoc-collection.c | 1406 +++++--- mongolite-1.0/mongolite/src/mongoc/mongoc-collection.h | 362 +- mongolite-1.0/mongolite/src/mongoc/mongoc-config.h | 27 mongolite-1.0/mongolite/src/mongoc/mongoc-counters-private.h | 134 mongolite-1.0/mongolite/src/mongoc/mongoc-counters.c | 91 mongolite-1.0/mongolite/src/mongoc/mongoc-crypto-cng-private.h | 19 mongolite-1.0/mongolite/src/mongoc/mongoc-crypto-cng.c | 64 mongolite-1.0/mongolite/src/mongoc/mongoc-crypto-common-crypto-private.h | 19 mongolite-1.0/mongolite/src/mongoc/mongoc-crypto-common-crypto.c | 29 mongolite-1.0/mongolite/src/mongoc/mongoc-crypto-openssl-private.h | 18 mongolite-1.0/mongolite/src/mongoc/mongoc-crypto-openssl.c | 45 mongolite-1.0/mongolite/src/mongoc/mongoc-crypto-private.h | 41 mongolite-1.0/mongolite/src/mongoc/mongoc-crypto.c | 25 mongolite-1.0/mongolite/src/mongoc/mongoc-cursor-array-private.h | 9 mongolite-1.0/mongolite/src/mongoc/mongoc-cursor-array.c | 71 mongolite-1.0/mongolite/src/mongoc/mongoc-cursor-cursorid-private.h | 39 mongolite-1.0/mongolite/src/mongoc/mongoc-cursor-cursorid.c | 80 mongolite-1.0/mongolite/src/mongoc/mongoc-cursor-private.h | 248 + mongolite-1.0/mongolite/src/mongoc/mongoc-cursor-transform-private.h | 26 mongolite-1.0/mongolite/src/mongoc/mongoc-cursor-transform.c | 48 mongolite-1.0/mongolite/src/mongoc/mongoc-cursor.c | 1409 +++++--- mongolite-1.0/mongolite/src/mongoc/mongoc-cursor.h | 70 mongolite-1.0/mongolite/src/mongoc/mongoc-database-private.h | 31 mongolite-1.0/mongolite/src/mongoc/mongoc-database.c | 529 +-- mongolite-1.0/mongolite/src/mongoc/mongoc-database.h | 151 mongolite-1.0/mongolite/src/mongoc/mongoc-errno-private.h | 17 mongolite-1.0/mongolite/src/mongoc/mongoc-error.h | 16 mongolite-1.0/mongolite/src/mongoc/mongoc-find-and-modify-private.h | 21 mongolite-1.0/mongolite/src/mongoc/mongoc-find-and-modify.c | 111 mongolite-1.0/mongolite/src/mongoc/mongoc-find-and-modify.h | 97 mongolite-1.0/mongolite/src/mongoc/mongoc-flags.h | 54 mongolite-1.0/mongolite/src/mongoc/mongoc-gridfs-file-list-private.h | 18 mongolite-1.0/mongolite/src/mongoc/mongoc-gridfs-file-list.c | 48 mongolite-1.0/mongolite/src/mongoc/mongoc-gridfs-file-list.h | 15 mongolite-1.0/mongolite/src/mongoc/mongoc-gridfs-file-page-private.h | 59 mongolite-1.0/mongolite/src/mongoc/mongoc-gridfs-file-page.c | 42 mongolite-1.0/mongolite/src/mongoc/mongoc-gridfs-file-page.h | 4 mongolite-1.0/mongolite/src/mongoc/mongoc-gridfs-file-private.h | 62 mongolite-1.0/mongolite/src/mongoc/mongoc-gridfs-file.c | 322 +- mongolite-1.0/mongolite/src/mongoc/mongoc-gridfs-file.h | 97 mongolite-1.0/mongolite/src/mongoc/mongoc-gridfs-private.h | 16 mongolite-1.0/mongolite/src/mongoc/mongoc-gridfs.c | 136 mongolite-1.0/mongolite/src/mongoc/mongoc-gridfs.h | 66 mongolite-1.0/mongolite/src/mongoc/mongoc-handshake-compiler-private.h |only mongolite-1.0/mongolite/src/mongoc/mongoc-handshake-os-private.h |only mongolite-1.0/mongolite/src/mongoc/mongoc-handshake-private.h |only mongolite-1.0/mongolite/src/mongoc/mongoc-handshake.c |only mongolite-1.0/mongolite/src/mongoc/mongoc-handshake.h |only mongolite-1.0/mongolite/src/mongoc/mongoc-host-list-private.h | 17 mongolite-1.0/mongolite/src/mongoc/mongoc-host-list.c | 4 mongolite-1.0/mongolite/src/mongoc/mongoc-host-list.h | 29 mongolite-1.0/mongolite/src/mongoc/mongoc-index.c | 56 mongolite-1.0/mongolite/src/mongoc/mongoc-index.h | 78 mongolite-1.0/mongolite/src/mongoc/mongoc-init.c | 72 mongolite-1.0/mongolite/src/mongoc/mongoc-init.h | 10 mongolite-1.0/mongolite/src/mongoc/mongoc-iovec.h | 19 mongolite-1.0/mongolite/src/mongoc/mongoc-libressl-private.h |only mongolite-1.0/mongolite/src/mongoc/mongoc-libressl.c |only mongolite-1.0/mongolite/src/mongoc/mongoc-linux-distro-scanner-private.h | 31 mongolite-1.0/mongolite/src/mongoc/mongoc-linux-distro-scanner.c | 109 mongolite-1.0/mongolite/src/mongoc/mongoc-list-private.h | 29 mongolite-1.0/mongolite/src/mongoc/mongoc-list.c | 28 mongolite-1.0/mongolite/src/mongoc/mongoc-log-private.h | 21 mongolite-1.0/mongolite/src/mongoc/mongoc-log.c | 163 - mongolite-1.0/mongolite/src/mongoc/mongoc-log.h | 65 mongolite-1.0/mongolite/src/mongoc/mongoc-matcher-op-private.h | 73 mongolite-1.0/mongolite/src/mongoc/mongoc-matcher-op.c | 324 -- mongolite-1.0/mongolite/src/mongoc/mongoc-matcher-private.h | 7 mongolite-1.0/mongolite/src/mongoc/mongoc-matcher.c | 116 mongolite-1.0/mongolite/src/mongoc/mongoc-matcher.h | 17 mongolite-1.0/mongolite/src/mongoc/mongoc-memcmp-private.h | 6 mongolite-1.0/mongolite/src/mongoc/mongoc-memcmp.c | 40 mongolite-1.0/mongolite/src/mongoc/mongoc-opcode-private.h | 3 mongolite-1.0/mongolite/src/mongoc/mongoc-opcode.c | 10 mongolite-1.0/mongolite/src/mongoc/mongoc-opcode.h | 23 mongolite-1.0/mongolite/src/mongoc/mongoc-openssl-private.h | 22 mongolite-1.0/mongolite/src/mongoc/mongoc-openssl.c | 210 - mongolite-1.0/mongolite/src/mongoc/mongoc-queue-private.h | 37 mongolite-1.0/mongolite/src/mongoc/mongoc-queue.c | 56 mongolite-1.0/mongolite/src/mongoc/mongoc-rand-cng.c | 24 mongolite-1.0/mongolite/src/mongoc/mongoc-rand-common-crypto.c | 24 mongolite-1.0/mongolite/src/mongoc/mongoc-rand-openssl.c | 26 mongolite-1.0/mongolite/src/mongoc/mongoc-rand-private.h | 5 mongolite-1.0/mongolite/src/mongoc/mongoc-rand.h | 11 mongolite-1.0/mongolite/src/mongoc/mongoc-read-concern-private.h | 16 mongolite-1.0/mongolite/src/mongoc/mongoc-read-concern.c | 63 mongolite-1.0/mongolite/src/mongoc/mongoc-read-concern.h | 26 mongolite-1.0/mongolite/src/mongoc/mongoc-read-prefs-private.h | 23 mongolite-1.0/mongolite/src/mongoc/mongoc-read-prefs.c | 98 mongolite-1.0/mongolite/src/mongoc/mongoc-read-prefs.h | 61 mongolite-1.0/mongolite/src/mongoc/mongoc-rpc-private.h | 119 mongolite-1.0/mongolite/src/mongoc/mongoc-rpc.c | 736 ++-- mongolite-1.0/mongolite/src/mongoc/mongoc-sasl-private.h | 78 mongolite-1.0/mongolite/src/mongoc/mongoc-sasl.c | 197 - mongolite-1.0/mongolite/src/mongoc/mongoc-scram-private.h | 47 mongolite-1.0/mongolite/src/mongoc/mongoc-scram.c | 256 - mongolite-1.0/mongolite/src/mongoc/mongoc-secure-channel-private.h | 48 mongolite-1.0/mongolite/src/mongoc/mongoc-secure-channel.c | 498 +-- mongolite-1.0/mongolite/src/mongoc/mongoc-secure-transport-private.h | 29 mongolite-1.0/mongolite/src/mongoc/mongoc-secure-transport.c | 183 - mongolite-1.0/mongolite/src/mongoc/mongoc-server-description-private.h | 130 mongolite-1.0/mongolite/src/mongoc/mongoc-server-description.c | 309 + mongolite-1.0/mongolite/src/mongoc/mongoc-server-description.h | 39 mongolite-1.0/mongolite/src/mongoc/mongoc-server-stream-private.h | 14 mongolite-1.0/mongolite/src/mongoc/mongoc-server-stream.c | 10 mongolite-1.0/mongolite/src/mongoc/mongoc-set-private.h | 56 mongolite-1.0/mongolite/src/mongoc/mongoc-set.c | 88 mongolite-1.0/mongolite/src/mongoc/mongoc-socket-private.h | 14 mongolite-1.0/mongolite/src/mongoc/mongoc-socket.c | 251 - mongolite-1.0/mongolite/src/mongoc/mongoc-socket.h | 141 mongolite-1.0/mongolite/src/mongoc/mongoc-ssl-private.h | 15 mongolite-1.0/mongolite/src/mongoc/mongoc-ssl.c | 47 mongolite-1.0/mongolite/src/mongoc/mongoc-ssl.h | 16 mongolite-1.0/mongolite/src/mongoc/mongoc-sspi-private.h |only mongolite-1.0/mongolite/src/mongoc/mongoc-sspi.c |only mongolite-1.0/mongolite/src/mongoc/mongoc-stream-buffered.c | 79 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-buffered.h | 8 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-file.c | 55 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-file.h | 15 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-gridfs.c | 37 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-gridfs.h | 7 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-private.h | 21 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-socket.c | 82 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-socket.h | 10 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls-libressl-private.h |only mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls-libressl.c |only mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls-libressl.h |only mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls-openssl-bio-private.h | 26 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls-openssl-bio.c | 57 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls-openssl-private.h | 13 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls-openssl.c | 193 - mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls-openssl.h | 12 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls-private.h | 23 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls-secure-channel-private.h | 33 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls-secure-channel.c | 442 +- mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls-secure-channel.h | 13 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls-secure-transport-private.h | 14 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls-secure-transport.c | 235 - mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls-secure-transport.h | 13 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls.c | 83 mongolite-1.0/mongolite/src/mongoc/mongoc-stream-tls.h | 54 mongolite-1.0/mongolite/src/mongoc/mongoc-stream.c | 128 mongolite-1.0/mongolite/src/mongoc/mongoc-stream.h | 138 mongolite-1.0/mongolite/src/mongoc/mongoc-thread-private.h | 108 mongolite-1.0/mongolite/src/mongoc/mongoc-topology-description-apm-private.h |only mongolite-1.0/mongolite/src/mongoc/mongoc-topology-description-apm.c |only mongolite-1.0/mongolite/src/mongoc/mongoc-topology-description-private.h | 119 mongolite-1.0/mongolite/src/mongoc/mongoc-topology-description.c | 946 +++-- mongolite-1.0/mongolite/src/mongoc/mongoc-topology-description.h |only mongolite-1.0/mongolite/src/mongoc/mongoc-topology-private.h | 97 mongolite-1.0/mongolite/src/mongoc/mongoc-topology-scanner-private.h | 122 mongolite-1.0/mongolite/src/mongoc/mongoc-topology-scanner.c | 315 + mongolite-1.0/mongolite/src/mongoc/mongoc-topology.c | 664 ++-- mongolite-1.0/mongolite/src/mongoc/mongoc-trace-private.h | 94 mongolite-1.0/mongolite/src/mongoc/mongoc-uri-private.h | 15 mongolite-1.0/mongolite/src/mongoc/mongoc-uri.c | 835 ++--- mongolite-1.0/mongolite/src/mongoc/mongoc-uri.h | 169 - mongolite-1.0/mongolite/src/mongoc/mongoc-util-private.h | 66 mongolite-1.0/mongolite/src/mongoc/mongoc-util.c | 144 mongolite-1.0/mongolite/src/mongoc/mongoc-version-functions.c | 2 mongolite-1.0/mongolite/src/mongoc/mongoc-version-functions.h | 23 mongolite-1.0/mongolite/src/mongoc/mongoc-version.h | 8 mongolite-1.0/mongolite/src/mongoc/mongoc-write-command-private.h | 173 - mongolite-1.0/mongolite/src/mongoc/mongoc-write-command.c | 856 +++-- mongolite-1.0/mongolite/src/mongoc/mongoc-write-concern-private.h | 47 mongolite-1.0/mongolite/src/mongoc/mongoc-write-concern.c | 187 - mongolite-1.0/mongolite/src/mongoc/mongoc-write-concern.h | 88 mongolite-1.0/mongolite/src/mongoc/mongoc.h | 5 mongolite-1.0/mongolite/src/mongoc/utlist.h | 1326 ++++---- mongolite-1.0/mongolite/tests/testthat/specifications |only mongolite-1.0/mongolite/tests/testthat/test-bson.R |only mongolite-1.0/mongolite/tools/winlibs.R | 7 289 files changed, 21246 insertions(+), 16371 deletions(-)
Title: Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Description: Functions to automate downloading geospatial data available from
several federated data sources (mainly sources maintained by the US Federal
government). Currently, the package enables extraction from six datasets:
The National Elevation Dataset digital elevation models (1 and 1/3 arc-second;
USGS); The National Hydrography Dataset (USGS); The Soil Survey Geographic
(SSURGO) database from the National Cooperative Soil Survey (NCSS), which is
led by the Natural Resources Conservation Service (NRCS) under the USDA; the
Global Historical Climatology Network (GHCN), coordinated by National Climatic
Data Center at NOAA; the Daymet gridded estimates of daily weather parameters
for North America, version 3, available from the Oak Ridge National Laboratory's
Distributed Active Archive Center (DAAC); and the International Tree Ring Data Bank.
Author: R. Kyle Bocinsky [aut, cre], Dylan Beaudette [ctb], Scott Chamberlain [ctb]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>
Diff between FedData versions 2.4.0 dated 2017-01-20 and 2.4.5 dated 2017-03-01
FedData-2.4.0/FedData/inst/CITATION |only FedData-2.4.0/FedData/man/FedData-package.Rd |only FedData-2.4.5/FedData/DESCRIPTION | 31 FedData-2.4.5/FedData/MD5 | 97 - FedData-2.4.5/FedData/NAMESPACE | 3 FedData-2.4.5/FedData/NEWS.md | 11 FedData-2.4.5/FedData/R/DAYMET_FUNCTIONS.R | 116 - FedData-2.4.5/FedData/R/GHCN_FUNCTIONS.R | 466 ++--- FedData-2.4.5/FedData/R/ITRDB_FUNCTIONS.R | 1270 +++++++-------- FedData-2.4.5/FedData/R/NED_FUNCTIONS.R | 218 +- FedData-2.4.5/FedData/R/NHD_FUNCTIONS.R | 274 +-- FedData-2.4.5/FedData/R/SSURGO_FUNCTIONS.R | 565 +++--- FedData-2.4.5/FedData/R/UTILITY_FUNCTIONS.R | 9 FedData-2.4.5/FedData/README.md | 125 - FedData-2.4.5/FedData/inst/FedDataTester.R | 84 FedData-2.4.5/FedData/inst/test.R |only FedData-2.4.5/FedData/man/download_data.Rd | 1 FedData-2.4.5/FedData/man/download_daymet_tile.Rd | 1 FedData-2.4.5/FedData/man/download_ghcn_daily_station.Rd | 1 FedData-2.4.5/FedData/man/download_huc4.Rd | 1 FedData-2.4.5/FedData/man/download_itrdb.Rd | 1 FedData-2.4.5/FedData/man/download_ned_tile.Rd | 1 FedData-2.4.5/FedData/man/download_nhd_subregion.Rd | 1 FedData-2.4.5/FedData/man/download_ssurgo_inventory.Rd | 1 FedData-2.4.5/FedData/man/download_ssurgo_study_area.Rd | 1 FedData-2.4.5/FedData/man/extract_ssurgo_data.Rd | 1 FedData-2.4.5/FedData/man/get_daymet.Rd | 5 FedData-2.4.5/FedData/man/get_daymet_tile.Rd | 1 FedData-2.4.5/FedData/man/get_ghcn_daily.Rd | 5 FedData-2.4.5/FedData/man/get_ghcn_daily_station.Rd | 1 FedData-2.4.5/FedData/man/get_ghcn_inventory.Rd | 1 FedData-2.4.5/FedData/man/get_huc4.Rd | 1 FedData-2.4.5/FedData/man/get_itrdb.Rd | 5 FedData-2.4.5/FedData/man/get_ned.Rd | 5 FedData-2.4.5/FedData/man/get_ned_tile.Rd | 1 FedData-2.4.5/FedData/man/get_nhd.Rd | 5 FedData-2.4.5/FedData/man/get_nhd_subregion.Rd | 1 FedData-2.4.5/FedData/man/get_ssurgo.Rd | 5 FedData-2.4.5/FedData/man/get_ssurgo_inventory.Rd | 1 FedData-2.4.5/FedData/man/get_ssurgo_study_area.Rd | 1 FedData-2.4.5/FedData/man/pkg_test.Rd | 1 FedData-2.4.5/FedData/man/polygon_from_extent.Rd | 1 FedData-2.4.5/FedData/man/read_crn.Rd | 1 FedData-2.4.5/FedData/man/read_crn_data.Rd | 1 FedData-2.4.5/FedData/man/read_crn_metadata.Rd | 1 FedData-2.4.5/FedData/man/sequential_duplicated.Rd | 1 FedData-2.4.5/FedData/man/spdf_from_polygon.Rd | 1 FedData-2.4.5/FedData/man/station_to_data_frame.Rd | 1 FedData-2.4.5/FedData/man/substr_right.Rd | 1 FedData-2.4.5/FedData/man/tiles.Rd | 3 FedData-2.4.5/FedData/man/unwrap_rows.Rd | 1 51 files changed, 1746 insertions(+), 1584 deletions(-)
Title: Build Error Correction Models
Description: Functions for easy building of error correction models (ECM) for time series regression.
Author: Gaurav Bansal
Maintainer: Gaurav Bansal <gaurbans@gmail.com>
Diff between ecm versions 0.7.0 dated 2017-02-24 and 0.8.0 dated 2017-03-01
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- R/durbinH.r | 6 +++--- R/ecm.R | 2 +- R/ecmback.r | 4 ++-- R/ecmpredict.r | 4 ++-- man/durbinH.Rd | 6 +++--- man/ecm.Rd | 2 +- man/ecmback.Rd | 4 ++-- 9 files changed, 25 insertions(+), 25 deletions(-)
Title: Bayesian Evaluation of Variant Involvement in Mendelian Disease
Description: A fast integrative genetic association test for rare diseases.
Author: Daniel Greene
Maintainer: Daniel Greene <dg333@cam.ac.uk>
Diff between BeviMed versions 3.0 dated 2017-02-16 and 4.0 dated 2017-03-01
BeviMed-3.0/BeviMed/man/gamma1_prob.Rd |only BeviMed-4.0/BeviMed/DESCRIPTION | 11 BeviMed-4.0/BeviMed/MD5 | 96 +- BeviMed-4.0/BeviMed/NAMESPACE | 8 BeviMed-4.0/BeviMed/NEWS.md | 10 BeviMed-4.0/BeviMed/R/convenience.R | 357 +++++----- BeviMed-4.0/BeviMed/R/functions.R | 272 ++++--- BeviMed-4.0/BeviMed/R/generics.R | 207 +++-- BeviMed-4.0/BeviMed/build/vignette.rds |binary BeviMed-4.0/BeviMed/inst/doc/Guide.R |only BeviMed-4.0/BeviMed/inst/doc/Guide.Rnw |only BeviMed-4.0/BeviMed/inst/doc/Guide.pdf |only BeviMed-4.0/BeviMed/inst/doc/Intro.Rmd | 30 BeviMed-4.0/BeviMed/inst/doc/Intro.html | 87 +- BeviMed-4.0/BeviMed/inst/doc/vcf.R | 4 BeviMed-4.0/BeviMed/inst/doc/vcf.Rmd | 4 BeviMed-4.0/BeviMed/inst/doc/vcf.html | 8 BeviMed-4.0/BeviMed/inst/scripts/vcf.R | 2 BeviMed-4.0/BeviMed/man/BeviMed-package.Rd | 34 BeviMed-4.0/BeviMed/man/CI_gamma1_evidence.Rd | 7 BeviMed-4.0/BeviMed/man/bevimed.Rd | 69 - BeviMed-4.0/BeviMed/man/bevimed_m.Rd |only BeviMed-4.0/BeviMed/man/call_cpp.Rd | 4 BeviMed-4.0/BeviMed/man/conditional_prob_pathogenic.Rd | 17 BeviMed-4.0/BeviMed/man/exact_evidence.Rd | 10 BeviMed-4.0/BeviMed/man/expected_explained.Rd | 12 BeviMed-4.0/BeviMed/man/explaining_variants.Rd | 12 BeviMed-4.0/BeviMed/man/extract_conditional_prob_pathogenic.Rd |only BeviMed-4.0/BeviMed/man/extract_expected_explained.Rd | 12 BeviMed-4.0/BeviMed/man/extract_explaining_variants.Rd | 12 BeviMed-4.0/BeviMed/man/extract_gamma1_evidence.Rd | 12 BeviMed-4.0/BeviMed/man/extract_prob_association.Rd |only BeviMed-4.0/BeviMed/man/extract_prob_pathogenic.Rd |only BeviMed-4.0/BeviMed/man/gamma0_evidence.Rd | 6 BeviMed-4.0/BeviMed/man/gamma1_evidence.Rd | 20 BeviMed-4.0/BeviMed/man/log_BF.Rd | 9 BeviMed-4.0/BeviMed/man/lower_bound_gamma1_evidence.Rd | 14 BeviMed-4.0/BeviMed/man/print.BeviMed.Rd | 9 BeviMed-4.0/BeviMed/man/print.BeviMed_m.Rd |only BeviMed-4.0/BeviMed/man/print.BeviMed_summary.Rd | 6 BeviMed-4.0/BeviMed/man/prob_association.Rd | 25 BeviMed-4.0/BeviMed/man/prob_association_m.Rd |only BeviMed-4.0/BeviMed/man/prob_pathogenic.Rd | 27 BeviMed-4.0/BeviMed/man/region_association_evidence.Rd | 12 BeviMed-4.0/BeviMed/man/stack_BeviMeds.Rd | 6 BeviMed-4.0/BeviMed/man/stop_chain.Rd | 12 BeviMed-4.0/BeviMed/man/sum_ML_over_PP.Rd | 2 BeviMed-4.0/BeviMed/man/summary.BeviMed.Rd | 31 BeviMed-4.0/BeviMed/man/summary.BeviMed_m.Rd |only BeviMed-4.0/BeviMed/man/tune_proposal_sds.Rd | 12 BeviMed-4.0/BeviMed/man/tune_temperatures.Rd | 6 BeviMed-4.0/BeviMed/src/sampling.cpp | 28 BeviMed-4.0/BeviMed/vignettes/Guide.Rnw |only BeviMed-4.0/BeviMed/vignettes/Intro.Rmd | 30 BeviMed-4.0/BeviMed/vignettes/vcf.Rmd | 4 55 files changed, 875 insertions(+), 681 deletions(-)