Title: Multilevel Index of Dissimilarity
Description: Tools and functions to fit a multilevel index of dissimilarity.
Author: Richard Harris [aut],
Dewi Owen [ctb]
Maintainer: Richard Harris <rich.harris@bris.ac.uk>
Diff between MLID versions 1.0.0 dated 2017-02-23 and 1.0.1 dated 2017-03-05
DESCRIPTION | 8 MD5 | 52 ++--- NAMESPACE | 2 R/catplot.R | 439 +++++++++++++++++++++++------------------------ R/impacts.R | 375 ++++++++++++++++++++-------------------- build/vignette.rds |binary data/datalist | 4 man/MLID.Rd | 40 ++-- man/aggdata.Rd | 86 ++++----- man/catplot.Rd | 110 +++++------ man/checkerboard.Rd | 68 +++---- man/confint.index.Rd | 102 +++++----- man/effect.Rd | 128 ++++++------- man/ethnicities.Rd | 86 ++++----- man/head.impacts.Rd | 48 ++--- man/holdback.Rd | 66 +++---- man/id.Rd | 278 ++++++++++++++--------------- man/impacts.Rd | 172 +++++++++--------- man/plot.confintindex.Rd | 48 ++--- man/print.fxindex.Rd | 34 +-- man/print.impacts.Rd | 32 +-- man/print.index.Rd | 38 ++-- man/residuals.index.Rd | 108 +++++------ man/rstandard.index.Rd | 48 ++--- man/rstudent.index.Rd | 48 ++--- man/sumup.Rd | 108 +++++------ man/tail.impacts.Rd | 48 ++--- 27 files changed, 1289 insertions(+), 1287 deletions(-)
Title: Multiplicative Interaction Models Diagnostics and Visualization
Description: Performs diagnostic tests of multiplicative interaction models and plots non-linear marginal effects of a treatment on an outcome across different values of a moderator.
Author: Jens Hainmueller, Jonathan Mummolo and Yiqing Xu
Maintainer: Yiqing Xu <yiqingxu@ucsd.edu>
Diff between interflex versions 1.0.2 dated 2017-02-26 and 1.0.3 dated 2017-03-05
DESCRIPTION | 8 +++---- MD5 | 7 +++--- NAMESPACE | 51 +++++++++++++++++++++++----------------------- man/interflex-internal.Rd |only src/interflex_init.c | 6 +++-- 5 files changed, 38 insertions(+), 34 deletions(-)
Title: The Faster Hash Map
Description: Provides a hash table class for fast
key-value storage of atomic vector types.
Internally, 'hashmap' makes extensive use of 'Rcpp', 'boost::variant',
and 'boost::unordered_map' to achieve high performance, type-safety,
and versatility, while maintaining compliance with the C++98 standard.
Author: Nathan Russell [aut, cre]
Maintainer: Nathan Russell <russell.nr2012@gmail.com>
Diff between hashmap versions 0.1.0 dated 2016-04-08 and 0.2.0 dated 2017-03-05
hashmap-0.1.0/hashmap/inst/include/hashmap/HashMap.hpp |only hashmap-0.1.0/hashmap/inst/include/hashmap/tools.hpp |only hashmap-0.2.0/hashmap/DESCRIPTION | 17 hashmap-0.2.0/hashmap/LICENSE | 2 hashmap-0.2.0/hashmap/MD5 | 56 hashmap-0.2.0/hashmap/NAMESPACE | 11 hashmap-0.2.0/hashmap/R/RcppExports.R |only hashmap-0.2.0/hashmap/R/classes.R | 46 hashmap-0.2.0/hashmap/R/clone.R |only hashmap-0.2.0/hashmap/R/hashmap.R | 3 hashmap-0.2.0/hashmap/R/load_hashmap.R |only hashmap-0.2.0/hashmap/R/merge.R |only hashmap-0.2.0/hashmap/R/plugin.R |only hashmap-0.2.0/hashmap/R/save_hashmap.R |only hashmap-0.2.0/hashmap/R/zzz.R | 7 hashmap-0.2.0/hashmap/README.md | 123 - hashmap-0.2.0/hashmap/inst/include/hashmap.h | 22 hashmap-0.2.0/hashmap/inst/include/hashmap/HashMapClass.h |only hashmap-0.2.0/hashmap/inst/include/hashmap/HashTemplate.hpp | 821 ++++++++++-- hashmap-0.2.0/hashmap/inst/include/hashmap/as_character.hpp |only hashmap-0.2.0/hashmap/inst/include/hashmap/format_date.hpp |only hashmap-0.2.0/hashmap/inst/include/hashmap/format_posix.hpp |only hashmap-0.2.0/hashmap/inst/include/hashmap/traits.hpp | 41 hashmap-0.2.0/hashmap/inst/include/hashmap/utils.hpp | 20 hashmap-0.2.0/hashmap/man/Hashmap-class.Rd | 5 hashmap-0.2.0/hashmap/man/Rcpp_Hashmap-class.Rd | 2 hashmap-0.2.0/hashmap/man/clone.Rd |only hashmap-0.2.0/hashmap/man/hashmap.Rd | 7 hashmap-0.2.0/hashmap/man/internal-functions.Rd |only hashmap-0.2.0/hashmap/man/load_hashmap.Rd |only hashmap-0.2.0/hashmap/man/merge.Rcpp_Hashmap.Rd |only hashmap-0.2.0/hashmap/man/plot.Rcpp_Hashmap.Rd |only hashmap-0.2.0/hashmap/man/save_hashmap.Rd |only hashmap-0.2.0/hashmap/src/HashMapClass.cpp |only hashmap-0.2.0/hashmap/src/Makevars | 2 hashmap-0.2.0/hashmap/src/RcppExports.cpp |only hashmap-0.2.0/hashmap/src/hashmap.cpp | 55 hashmap-0.2.0/hashmap/src/init.c |only hashmap-0.2.0/hashmap/src/joins.cpp |only hashmap-0.2.0/hashmap/tests/testthat/test-merge.R |only hashmap-0.2.0/hashmap/tests/testthat/test-save-load.R |only 41 files changed, 967 insertions(+), 273 deletions(-)
Title: Evaluation of Surrogate Endpoints in Clinical Trials
Description: In a clinical trial, it frequently occurs that the most credible outcome to evaluate the effectiveness of a new therapy (the true endpoint) is difficult to measure. In such a situation, it can be an effective strategy to replace the true endpoint by a (bio)marker that is easier to measure and that allows for a prediction of the treatment effect on the true endpoint (a surrogate endpoint). The package 'Surrogate' allows for an evaluation of the appropriateness of a candidate surrogate endpoint based on the meta-analytic, information-theoretic, and causal-inference frameworks. Part of this software has been developed using funding provided from the European Union's Seventh Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Paul Meyvisch, Ariel Alonso, Hannah M. Ensor, Christopher J. Weir & Geert Molenberghs
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>
Diff between Surrogate versions 0.1-79 dated 2016-10-27 and 0.1-801 dated 2017-03-05
DESCRIPTION | 11 +++++------ MD5 | 25 +++++++++++++++++-------- NAMESPACE | 10 +++++++--- NEWS | 4 ++++ R/AA.MultS.R |only R/ICA.Cont.Cont.MultS.R |only R/ICA.Cont.Cont.MultS_alt.R |only data/ARMD.MultS.rda |only man/AA.MultS.Rd |only man/ARMD.MultS.Rd |only man/BimixedContCont.Rd | 2 +- man/ICA.ContCont.MultS.Rd |only man/ICA.ContCont.Mult_alt.Rd |only man/MixedContContIT.Rd | 2 +- man/Pred.TrialT.ContCont.Rd | 9 +++++---- man/UnimixedContCont.Rd | 2 +- man/plot.ICA.ContCont.Mult.Rd |only man/summary.gen.Rd | 4 ++++ 18 files changed, 45 insertions(+), 24 deletions(-)
Title: Monte-Carlo Methods for Prediction Functions
Description: Marginalizes prediction functions using Monte-Carlo integration and computes permutation importance.
Author: Zachary Jones [aut, cre]
Maintainer: Zachary Jones <zmj@zmjones.com>
Diff between mmpf versions 0.0.2 dated 2016-11-30 and 0.0.3 dated 2017-03-05
mmpf-0.0.2/mmpf/README.md |only mmpf-0.0.3/mmpf/DESCRIPTION | 10 mmpf-0.0.3/mmpf/MD5 | 31 - mmpf-0.0.3/mmpf/R/grid.R | 2 mmpf-0.0.3/mmpf/R/mp.R | 41 -- mmpf-0.0.3/mmpf/build/vignette.rds |binary mmpf-0.0.3/mmpf/inst/doc/mmpf.R | 7 mmpf-0.0.3/mmpf/inst/doc/mmpf.Rmd | 9 mmpf-0.0.3/mmpf/inst/doc/mmpf.html | 463 +++++++++------------------ mmpf-0.0.3/mmpf/man/cartesianExpand.Rd | 1 mmpf-0.0.3/mmpf/man/makeDesign.Rd | 1 mmpf-0.0.3/mmpf/man/makePermutedDesign.Rd | 1 mmpf-0.0.3/mmpf/man/marginalPrediction.Rd | 10 mmpf-0.0.3/mmpf/man/permutationImportance.Rd | 1 mmpf-0.0.3/mmpf/man/uniformGrid.Rd | 1 mmpf-0.0.3/mmpf/tests/testthat/test_mp.R | 22 - mmpf-0.0.3/mmpf/vignettes/mmpf.Rmd | 9 17 files changed, 219 insertions(+), 390 deletions(-)
Title: Imprecise Inference for Poisson Sampling Models
Description: Tools performing an imprecise inference for estimating the parameter of Poisson sampling model. Extended the original work done in the PhD thesis of Lee (2014). The theory of imprecise probabilities introduced by Peter Walley in 1991 becomes the basis of this inferential framework.
Author: Chel Hee Lee [aut, cre, cph], Mikelis Bickis [ths, cph]
Maintainer: Chel Hee Lee <chl948@mail.usask.ca>
Diff between imPois versions 0.0.7.5 dated 2015-11-28 and 0.1.4 dated 2017-03-05
imPois-0.0.7.5/imPois/ChangeLog |only imPois-0.0.7.5/imPois/R/graphics.R |only imPois-0.0.7.5/imPois/R/imPois.R |only imPois-0.0.7.5/imPois/R/tools.R |only imPois-0.0.7.5/imPois/R/ztrunc.R |only imPois-0.0.7.5/imPois/README |only imPois-0.0.7.5/imPois/demo |only imPois-0.0.7.5/imPois/man/characterize_imprecise_prior.Rd |only imPois-0.0.7.5/imPois/man/expected_value_of_imprecise_distribution.Rd |only imPois-0.0.7.5/imPois/man/hyperpara_optim.Rd |only imPois-0.0.7.5/imPois/man/imPois.Rd |only imPois-0.0.7.5/imPois/man/imprecise_distribution.Rd |only imPois-0.0.7.5/imPois/man/imprecise_learning_from_observation.Rd |only imPois-0.0.7.5/imPois/man/kernel_of_imprecise_prob_measure.Rd |only imPois-0.0.7.5/imPois/man/normalize_imprecise_prob_measure.Rd |only imPois-0.0.7.5/imPois/man/plot_imprecise_object.Rd |only imPois-0.0.7.5/imPois/man/print_imprecise_objects.Rd |only imPois-0.0.7.5/imPois/man/summary_imprecise_object.Rd |only imPois-0.1.4/imPois/DESCRIPTION | 22 +-- imPois-0.1.4/imPois/MD5 | 61 +++++----- imPois-0.1.4/imPois/NAMESPACE | 35 +++-- imPois-0.1.4/imPois/R/imCoords.R |only imPois-0.1.4/imPois/R/imGraphics.R |only imPois-0.1.4/imPois/R/imPoisC.R |only imPois-0.1.4/imPois/R/imPoisM.R |only imPois-0.1.4/imPois/R/imTools.R |only imPois-0.1.4/imPois/R/imZTPoisM.R |only imPois-0.1.4/imPois/R/optim.R | 22 ++- imPois-0.1.4/imPois/build |only imPois-0.1.4/imPois/inst |only imPois-0.1.4/imPois/man/bary2cart.Rd |only imPois-0.1.4/imPois/man/cpm.Rd |only imPois-0.1.4/imPois/man/hparaOptim.Rd |only imPois-0.1.4/imPois/man/iprior.Rd |only imPois-0.1.4/imPois/man/plot.Rd |only imPois-0.1.4/imPois/man/print.Rd |only imPois-0.1.4/imPois/man/summary.Rd |only imPois-0.1.4/imPois/man/update.Rd |only imPois-0.1.4/imPois/vignettes |only 39 files changed, 83 insertions(+), 57 deletions(-)
Title: Calculate Cluster-Robust p-Values and Confidence Intervals
Description: Calculate p-values and confidence intervals using cluster-adjusted
t-statistics (based on Ibragimov and Muller (2010) <DOI:10.1198/jbes.2009.08046>, pairs cluster bootstrapped t-statistics, and wild cluster bootstrapped t-statistics (the latter two techniques based on Cameron, Gelbach, and Miller (2008) <DOI:10.1162/rest.90.3.414>. Procedures are included for use with GLM, ivreg, plm (pooling or fixed effects), and mlogit models.
Author: Justin Esarey [aut, cre]
Maintainer: Justin Esarey <justin@justinesarey.com>
Diff between clusterSEs versions 2.3.2 dated 2016-07-17 and 2.3.3 dated 2017-03-05
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/clusterwild.plm.R | 36 ++++++++++++++++++++++++------------ 3 files changed, 30 insertions(+), 18 deletions(-)
Title: Automatic Item Generator
Description: A collection of Automatic Item Generators used mainly for psychological research. This package can generate linear syllogistic reasoning, arithmetic and 2D/3D spatial reasoning items. It is recommended for research purpose only.
Author: Bao Sheng Loe (Aiden)
Maintainer: Bao Sheng Loe (Aiden) <bsl28@cam.ac.uk>
Diff between AIG versions 0.1.1 dated 2017-02-12 and 0.1.2 dated 2017-03-05
DESCRIPTION | 12 ++++++------ MD5 | 24 +++++++++++++++--------- NAMESPACE | 16 ++++++++++++++++ R/AIG.R | 15 ++++++++++++++- R/ARMadd.R | 1 + R/MR3d.R |only R/MRcube.R |only R/MRtwoD.R |only R/lisy.R | 1 + README.md | 18 ++++++++++++++---- man/AIG.Rd | 18 +++++++++++++++++- man/arith.Rd | 3 +++ man/lisy.Rd | 3 +++ man/spatial2d.Rd |only man/spatial3d.Rd |only man/spatial3d_mirror.Rd |only 16 files changed, 90 insertions(+), 21 deletions(-)
Title: Statistical Functions for the Delaporte Distribution
Description: Provides probability mass, distribution, quantile, random-variate generation, and method-of-moments parameter-estimation functions for the Delaporte distribution. The Delaporte is a discrete probability distribution which can be considered the convolution of a negative binomial distribution with a Poisson distribution. Alternatively, it can be considered a counting distribution with both Poisson and negative binomial components. It has been studied in actuarial science as a frequency distribution which has more variability than the Poisson, but less than the negative binomial.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between Delaporte versions 4.0.3 dated 2017-01-31 and 5.0.0 dated 2017-03-05
Delaporte-4.0.3/Delaporte/man/Delaporte-deprecated.Rd |only Delaporte-5.0.0/Delaporte/DESCRIPTION | 8 Delaporte-5.0.0/Delaporte/MD5 | 28 +- Delaporte-5.0.0/Delaporte/NAMESPACE | 2 Delaporte-5.0.0/Delaporte/R/Delaporte.R | 26 -- Delaporte-5.0.0/Delaporte/build/partial.rdb |binary Delaporte-5.0.0/Delaporte/inst/NEWS.Rd | 63 ++++- Delaporte-5.0.0/Delaporte/man/Delaporte-defunct.Rd |only Delaporte-5.0.0/Delaporte/man/Delaporte-package.Rd | 4 Delaporte-5.0.0/Delaporte/man/Delaporte.Rd | 16 - Delaporte-5.0.0/Delaporte/src/Makevars | 4 Delaporte-5.0.0/Delaporte/src/delaporte.f95 | 220 +++++++++--------- Delaporte-5.0.0/Delaporte/src/lgamma.f95 | 158 ++++++------ Delaporte-5.0.0/Delaporte/src/utils.f95 | 62 ++--- Delaporte-5.0.0/Delaporte/src/utils_and_wrappers.c | 61 ++-- Delaporte-5.0.0/Delaporte/tests/testthat/test-delap.r | 170 +++++++++++-- 16 files changed, 491 insertions(+), 331 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-26 0.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-27 1.2.3
2017-02-13 1.2.2
2016-10-25 1.1.2
2016-03-29 1.1.1
2016-03-28 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-05 0.1.3
Title: Who Are You? Bayesian Prediction of Racial Category Using
Surname and Geolocation
Description: This open-source software package enables researchers to predict
individual ethnicity using his/her surname, geolocation, and other attributes
such as gender and age. The method utilizes the Bayes' rule to compute the
posterior probability of each racial category for any given individual voter.
The package implements methods described in Imai and Khanna (2016) "Improving
Ecological Inference by Predicting Individual Ethnicity from Voter Registration
Records" <DOI:10.1093/pan/mpw001>.
Author: Kabir Khanna [aut, cre], Kosuke Imai [aut, cre], Hubert Jin [ctb]
Maintainer: Kabir Khanna <kkhanna@princeton.edu>
Diff between wru versions 0.1-1 dated 2016-12-13 and 0.1-2 dated 2017-03-05
wru |only 1 file changed
Title: Stochastic Process Model for Analysis of Longitudinal and
Time-to-Event Outcomes
Description: Utilities to estimate parameters of the models with survival functions
induced by stochastic covariates. Miscellaneous functions for data preparation
and simulation are also provided. For more information, see:
(i)"Stochastic model for analysis of longitudinal data on aging and mortality"
by Yashin A. et al. (2007),
Mathematical Biosciences, 208(2), 538-551, <DOI:10.1016/j.mbs.2006.11.006>;
(ii) "Health decline, aging and mortality: how are they related?"
by Yashin A. et al. (2007),
Biogerontology 8(3), 291(302), <DOI:10.1007/s10522-006-9073-3>.
Author: I. Y. Zhbannikov, Liang He, K. G. Arbeev, A. I. Yashin.
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>
Diff between stpm versions 1.6.0 dated 2017-02-03 and 1.6.4 dated 2017-03-05
stpm-1.6.0/stpm/NEWS |only stpm-1.6.0/stpm/data/longdat.csv |only stpm-1.6.0/stpm/data/vitstat.csv |only stpm-1.6.4/stpm/DESCRIPTION | 16 stpm-1.6.4/stpm/MD5 | 99 +- stpm-1.6.4/stpm/NAMESPACE | 2 stpm-1.6.4/stpm/R/general.R | 6 stpm-1.6.4/stpm/R/longdat.R | 7 stpm-1.6.4/stpm/R/prepare_data.R | 2 stpm-1.6.4/stpm/R/spm.impute.R | 26 stpm-1.6.4/stpm/R/spm_con_1d_g.r | 10 stpm-1.6.4/stpm/build/vignette.rds |binary stpm-1.6.4/stpm/data/ex_spmcon1dg.rda |only stpm-1.6.4/stpm/inst/NEWS |only stpm-1.6.4/stpm/inst/doc/stpm-vignette.R | 2 stpm-1.6.4/stpm/inst/doc/stpm-vignette.Rmd | 2 stpm-1.6.4/stpm/inst/doc/stpm-vignette.html | 1081 ++++++++++++++++----------- stpm-1.6.4/stpm/inst/extdata |only stpm-1.6.4/stpm/man/ex_data.Rd |only stpm-1.6.4/stpm/man/func1.Rd | 1 stpm-1.6.4/stpm/man/getNextY.Rd | 1 stpm-1.6.4/stpm/man/getNextY.cont.Rd | 1 stpm-1.6.4/stpm/man/getNextY.discr.Rd | 1 stpm-1.6.4/stpm/man/getNextY.discr.m.Rd | 11 stpm-1.6.4/stpm/man/getPrevY.discr.Rd | 11 stpm-1.6.4/stpm/man/getPrevY.discr.m.Rd | 9 stpm-1.6.4/stpm/man/longdat.Rd | 1 stpm-1.6.4/stpm/man/m.Rd | 1 stpm-1.6.4/stpm/man/mu.Rd | 1 stpm-1.6.4/stpm/man/prepare_data.Rd | 3 stpm-1.6.4/stpm/man/prepare_data_cont.Rd | 1 stpm-1.6.4/stpm/man/prepare_data_discr.Rd | 1 stpm-1.6.4/stpm/man/sigma_sq.Rd | 1 stpm-1.6.4/stpm/man/sim_pobs.Rd | 1 stpm-1.6.4/stpm/man/simdata_cont.Rd | 1 stpm-1.6.4/stpm/man/simdata_discr.Rd | 1 stpm-1.6.4/stpm/man/simdata_gamma_frailty.Rd | 1 stpm-1.6.4/stpm/man/simdata_time_dep.Rd | 1 stpm-1.6.4/stpm/man/spm.Rd | 1 stpm-1.6.4/stpm/man/spm.impute.Rd | 1 stpm-1.6.4/stpm/man/spm_con_1d.Rd | 1 stpm-1.6.4/stpm/man/spm_con_1d_g.Rd | 11 stpm-1.6.4/stpm/man/spm_continuous.Rd | 1 stpm-1.6.4/stpm/man/spm_discrete.Rd | 1 stpm-1.6.4/stpm/man/spm_pobs.Rd | 1 stpm-1.6.4/stpm/man/spm_projection.Rd | 1 stpm-1.6.4/stpm/man/spm_time_dep.Rd | 1 stpm-1.6.4/stpm/man/stpm.Rd | 8 stpm-1.6.4/stpm/man/trim.Rd | 1 stpm-1.6.4/stpm/man/trim.leading.Rd | 1 stpm-1.6.4/stpm/man/trim.trailing.Rd | 1 stpm-1.6.4/stpm/man/vitstat.Rd | 1 stpm-1.6.4/stpm/src/registerDynamicSymbol.c |only stpm-1.6.4/stpm/vignettes/stpm-vignette.Rmd | 2 54 files changed, 765 insertions(+), 570 deletions(-)
Title: NPLS Regression with L1 Penalization
Description: Tools for performing variable selection in three-way data using N-PLS in combination with L1 penalization.
Author: David Hervas
Maintainer: David Hervas <ddhervas@yahoo.es>
Diff between sNPLS versions 0.1.4 dated 2016-12-27 and 0.1.5 dated 2017-03-05
DESCRIPTION | 9 +++++---- MD5 | 40 ++++++++++++++++++++++------------------ NAMESPACE | 2 ++ R/bread-data.R |only R/sNPLS_fit.R | 14 ++++++++++++++ data |only man/Rmatrix.Rd | 1 - man/bread.Rd |only man/coef.sNPLS.Rd | 1 - man/cv_fit.Rd | 1 - man/cv_snpls.Rd | 1 - man/plot.cvsNPLS.Rd | 1 - man/plot.sNPLS.Rd | 1 - man/plot_T.Rd | 1 - man/plot_U.Rd | 1 - man/plot_Wj.Rd | 1 - man/plot_Wk.Rd | 1 - man/plot_time.Rd | 1 - man/predict.sNPLS.Rd | 1 - man/repeat_cv.Rd | 1 - man/sNPLS.Rd | 1 - man/summary.sNPLS.Rd |only man/unfold3w.Rd | 1 - 23 files changed, 43 insertions(+), 37 deletions(-)
Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, PCA and correlation matrices, cluster analyses, scatter
plots, Likert scales, effects plots of regression models (including interaction
terms) and much more. This package supports labelled data.
Author: Daniel Lüdecke [aut, cre],
Carsten Schwemmer [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 2.3.0 dated 2017-02-06 and 2.3.1 dated 2017-03-05
DESCRIPTION | 27 MD5 | 243 NAMESPACE | 475 - NEWS | 850 +-- NEWS.md | 253 R/S3-methods.R |only R/helpfunctions.R | 1768 +++--- R/set_theme.R | 288 - R/sjPlotAnova.R | 586 +- R/sjPlotClusterAnalysis.R | 302 - R/sjPlotCorr.R | 568 +- R/sjPlotDist.R | 1036 ++-- R/sjPlotFrequencies.R | 224 R/sjPlotGLME.R | 265 - R/sjPlotGroupFrequencies.R | 493 + R/sjPlotGroupPropTable.R | 74 R/sjPlotInteractions.R | 194 R/sjPlotLikert.R | 143 R/sjPlotLinreg.R | 195 R/sjPlotOdds.R | 246 R/sjPlotOddsMultiple.R | 106 R/sjPlotPCA.R | 123 R/sjPlotPearsonsChi2Test.R | 231 R/sjPlotPolynomials.R | 540 +- R/sjPlotPropTable.R | 82 R/sjPlotResiduals.R | 60 R/sjPlotScatter.R | 732 +- R/sjPlotSetTheme.R | 296 - R/sjPlotStackFrequencies.R | 750 +- R/sjTabCorr.R | 967 +-- R/sjTabDataFrame.R | 797 +-- R/sjTabFrequencies.R | 572 +- R/sjTabGrpmean.R | 66 R/sjTabItemAnalysis.R | 779 +-- R/sjTabLinReg.R | 411 - R/sjTabMannWhitney.R | 182 R/sjTabOdds.R | 2524 +++++---- R/sjTabPCA.R | 1092 ++-- R/sjTabPropTable.R | 222 R/sjTabSPSS.R | 101 R/sjTabStackFrq.R | 14 R/sjplot.R | 695 +- R/table_functions.R | 518 +- README.md | 90 build/partial.rdb |binary build/vignette.rds |binary inst/doc/blackwhitefigures.R | 58 inst/doc/blackwhitefigures.Rmd | 126 inst/doc/blackwhitefigures.html | 270 - inst/doc/custplot.R | 258 - inst/doc/custplot.html | 480 - inst/doc/sjpglm.R | 180 inst/doc/sjpglm.html | 396 - inst/doc/sjplmer.R | 152 inst/doc/sjplmer.html | 378 - inst/doc/sjtbasic.R | 98 inst/doc/sjtbasic.Rmd | 296 - inst/doc/sjtbasic.html | 1901 ++++--- inst/doc/sjtitemanalysis.R | 51 inst/doc/sjtitemanalysis.Rmd | 13 inst/doc/sjtitemanalysis.html | 2371 ++++----- inst/doc/sjtlm.R | 236 inst/doc/sjtlm.Rmd | 115 inst/doc/sjtlm.html |10175 +++++++++++++++++++--------------------- inst/doc/sjtlmer.R | 186 inst/doc/sjtlmer.Rmd | 377 - inst/doc/sjtlmer.html | 8682 +++++++++++++++++----------------- man/dist_chisq.Rd | 118 man/dist_f.Rd | 108 man/dist_norm.Rd | 106 man/dist_t.Rd | 104 man/plot_grid.Rd | 84 man/save_plot.Rd | 107 man/set_theme.Rd | 92 man/sjPlot-package.Rd | 76 man/sjc.cluster.Rd | 184 man/sjc.dend.Rd | 102 man/sjc.elbow.Rd | 64 man/sjc.grpdisc.Rd | 98 man/sjc.kgap.Rd | 132 man/sjc.qclus.Rd | 344 - man/sjp.aov1.Rd | 217 man/sjp.chi2.Rd | 124 man/sjp.corr.Rd | 250 man/sjp.frq.Rd | 477 - man/sjp.glm.Rd | 521 +- man/sjp.glmer.Rd | 681 +- man/sjp.glmm.Rd | 391 - man/sjp.gpt.Rd | 238 man/sjp.grpfrq.Rd | 448 - man/sjp.int.Rd | 724 +- man/sjp.kfold_cv.Rd | 120 man/sjp.likert.Rd | 349 - man/sjp.lm.Rd | 751 +- man/sjp.lmer.Rd | 765 +-- man/sjp.lmm.Rd | 385 - man/sjp.pca.Rd | 269 - man/sjp.poly.Rd | 291 - man/sjp.resid.Rd | 136 man/sjp.scatter.Rd | 338 - man/sjp.setTheme.Rd | 508 - man/sjp.stackfrq.Rd | 268 - man/sjp.xtab.Rd | 414 - man/sjplot.Rd | 238 man/sjt.corr.Rd | 316 - man/sjt.df.Rd | 302 - man/sjt.frq.Rd | 438 - man/sjt.glm.Rd | 687 +- man/sjt.glmer.Rd | 534 +- man/sjt.grpmean.Rd | 190 man/sjt.itemanalysis.Rd | 362 - man/sjt.lm.Rd | 774 +-- man/sjt.lmer.Rd | 608 +- man/sjt.mwu.Rd | 145 man/sjt.pca.Rd | 280 - man/sjt.stackfrq.Rd | 352 - man/sjt.xtab.Rd | 367 - man/view_df.Rd | 277 - vignettes/blackwhitefigures.Rmd | 126 vignettes/sjtbasic.Rmd | 296 - vignettes/sjtitemanalysis.Rmd | 13 vignettes/sjtlm.Rmd | 115 vignettes/sjtlmer.Rmd | 377 - 123 files changed, 32459 insertions(+), 31701 deletions(-)
Title: IGM MEA Analysis
Description: Software tools for the characterization of neuronal networks as recorded on multi-electrode arrays.
Author: Quanli Wang, Sahar Gelfman, Diana Hall, Ryan Dhindsa
Maintainer: Sahar Gelfman <sg3261@columbia.edu>
Diff between IGM.MEA versions 0.3.4.1 dated 2016-11-17 and 0.3.5 dated 2017-03-05
IGM.MEA-0.3.4.1/IGM.MEA/R/aggregate_data.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/arrays.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/axion_functions.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/bci.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/burst_functions.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/calculateOtsu.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/corr_index.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/episode.detection.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/findEpisodes.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/general.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/local.corr.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/ms_funs.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/perm_plot.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/plot.mm.s.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/plotDistributions.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/spike.simulation.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/surprise2.R |only IGM.MEA-0.3.4.1/IGM.MEA/R/tiling.R |only IGM.MEA-0.3.4.1/IGM.MEA/man/IGM.aggregate.feature.data.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/IGM.mean.firingrate.by.well.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/IGM.plot.distributions.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/IGM.plot.ns.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/IGM.summary.network.spikes.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/axion.elec.name.to.xy.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/axion.elec2well.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/axion.electrodes.on.well.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/axion.guess.well.number.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/axion.spikestodf.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/axion.spikesum.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/axion.spikesum2.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/burstinfo.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/chem.info.2.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/construct.s.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/get.array.info.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/make.raster.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/plateinfo.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/write.csv.network.spikes.Rd |only IGM.MEA-0.3.4.1/IGM.MEA/man/write.pdf.Rd |only IGM.MEA-0.3.5/IGM.MEA/DESCRIPTION | 12 IGM.MEA-0.3.5/IGM.MEA/MD5 | 110 - IGM.MEA-0.3.5/IGM.MEA/R/MEA_functions.R | 39 IGM.MEA-0.3.5/IGM.MEA/R/NetworkBurst_functions.R | 167 +- IGM.MEA-0.3.5/IGM.MEA/R/aggregateData.R |only IGM.MEA-0.3.5/IGM.MEA/R/axion.R |only IGM.MEA-0.3.5/IGM.MEA/R/burstDistributions_functions.R |only IGM.MEA-0.3.5/IGM.MEA/R/burst_stats.R |only IGM.MEA-0.3.5/IGM.MEA/R/bursts.R | 13 IGM.MEA-0.3.5/IGM.MEA/R/corrIndex.R |only IGM.MEA-0.3.5/IGM.MEA/R/logisi.R | 2 IGM.MEA-0.3.5/IGM.MEA/R/make.raster.R | 645 ++++++---- IGM.MEA-0.3.5/IGM.MEA/R/networkspikes.R | 177 -- IGM.MEA-0.3.5/IGM.MEA/R/networkspikes_functions.R | 8 IGM.MEA-0.3.5/IGM.MEA/R/permPlot.R |only IGM.MEA-0.3.5/IGM.MEA/R/si.R |only IGM.MEA-0.3.5/IGM.MEA/R/spikelist_functions.R |only IGM.MEA-0.3.5/IGM.MEA/R/spikes.R | 283 +++- IGM.MEA-0.3.5/IGM.MEA/R/utils.R | 8 IGM.MEA-0.3.5/IGM.MEA/build |only IGM.MEA-0.3.5/IGM.MEA/data/parameters.r | 6 IGM.MEA-0.3.5/IGM.MEA/inst/doc |only IGM.MEA-0.3.5/IGM.MEA/inst/extdata/exampleRecording_1012016_plate1_DIV1_spike_list.csv.gz |binary IGM.MEA-0.3.5/IGM.MEA/inst/extdata/exampleRecording_1012016_plate1_DIV3_spike_list.csv.gz |only IGM.MEA-0.3.5/IGM.MEA/inst/extdata/exampleRecording_1012016_plate1_DIV4_spike_list.csv.gz |only IGM.MEA-0.3.5/IGM.MEA/inst/extdata/exampleRecording_1012016_plate1_expLog.csv.gz |binary IGM.MEA-0.3.5/IGM.MEA/man/IGM.aggregate.features.Rd |only IGM.MEA-0.3.5/IGM.MEA/man/IGM.compute.mean.firingrate.by.well.Rd |only IGM.MEA-0.3.5/IGM.MEA/man/IGM.plot.network.spikes.Rd |only IGM.MEA-0.3.5/IGM.MEA/man/IGM.plot.plate.summary.for.bursts.Rd | 2 IGM.MEA-0.3.5/IGM.MEA/man/NB.matrix.to.feature.dfs.Rd | 4 IGM.MEA-0.3.5/IGM.MEA/man/S.Rd | 2 IGM.MEA-0.3.5/IGM.MEA/man/caclulate.burst.features.Rd |only IGM.MEA-0.3.5/IGM.MEA/man/caclulate.spike.features.Rd |only IGM.MEA-0.3.5/IGM.MEA/man/calc.burst.distributions.Rd |only IGM.MEA-0.3.5/IGM.MEA/man/calculate.network.bursts.Rd | 28 IGM.MEA-0.3.5/IGM.MEA/man/dist.perm.Rd |only IGM.MEA-0.3.5/IGM.MEA/man/filter.wells.Rd | 2 IGM.MEA-0.3.5/IGM.MEA/man/generate.raster.plot.Rd |only IGM.MEA-0.3.5/IGM.MEA/man/get.burst.info.Rd |only IGM.MEA-0.3.5/IGM.MEA/man/get.experimental.log.file.Rd |only IGM.MEA-0.3.5/IGM.MEA/man/load.spikelist.Rd |only IGM.MEA-0.3.5/IGM.MEA/man/permute.features.and.plot.Rd |only IGM.MEA-0.3.5/IGM.MEA/man/read.spikelist.Rd |only IGM.MEA-0.3.5/IGM.MEA/man/si.find.bursts.Rd |only IGM.MEA-0.3.5/IGM.MEA/man/summarize.network.spikes.Rd |only IGM.MEA-0.3.5/IGM.MEA/man/write.features.to.files.Rd | 4 IGM.MEA-0.3.5/IGM.MEA/man/write.network.spikes.to.csv.Rd |only IGM.MEA-0.3.5/IGM.MEA/src/registerC.c |only IGM.MEA-0.3.5/IGM.MEA/src/tiling.c | 5 IGM.MEA-0.3.5/IGM.MEA/vignettes |only 89 files changed, 883 insertions(+), 634 deletions(-)
Title: Miscellaneous Tools for Chinese Text Mining and More
Description: Efforts are made to make Chinese text mining easier, faster, and robust to errors.
Document term matrix can be generated by only one line of code; detecting encoding,
segmenting and removing stop words are done automatically.
Some convenient tools are also supplied.
Author: Jiang Wu [aut, cre] (from Tsinghua University)
Maintainer: Jiang Wu <textidea@sina.com>
Diff between chinese.misc versions 0.1.1 dated 2017-02-19 and 0.1.2 dated 2017-03-05
chinese.misc-0.1.1/chinese.misc/R/zXzXz.R |only chinese.misc-0.1.2/chinese.misc/DESCRIPTION | 16 - chinese.misc-0.1.2/chinese.misc/MD5 | 68 ++--- chinese.misc-0.1.2/chinese.misc/NEWS | 24 + chinese.misc-0.1.2/chinese.misc/R/DEFAULT_control1.R | 13 chinese.misc-0.1.2/chinese.misc/R/DEFAULT_control2.R | 7 chinese.misc-0.1.2/chinese.misc/R/DEFAULT_cutter.R | 1 chinese.misc-0.1.2/chinese.misc/R/UsEstrIngI.R |only chinese.misc-0.1.2/chinese.misc/R/as.character2.R | 51 ++- chinese.misc-0.1.2/chinese.misc/R/chEck_cOntrOl.R | 42 ++- chinese.misc-0.1.2/chinese.misc/R/corp_or_dtm.R | 157 +++++++----- chinese.misc-0.1.2/chinese.misc/R/dir_or_file.R | 5 chinese.misc-0.1.2/chinese.misc/R/gEtthEEnc.R | 5 chinese.misc-0.1.2/chinese.misc/R/inner_from_df.R | 6 chinese.misc-0.1.2/chinese.misc/R/is_positive_integer.R | 6 chinese.misc-0.1.2/chinese.misc/R/list.as.character.R | 12 chinese.misc-0.1.2/chinese.misc/R/m2doc.R | 8 chinese.misc-0.1.2/chinese.misc/R/make_stoplist.R | 45 +-- chinese.misc-0.1.2/chinese.misc/R/make_valid_folder.R | 2 chinese.misc-0.1.2/chinese.misc/R/package-chinese.misc.R | 6 chinese.misc-0.1.2/chinese.misc/R/scancn.R | 12 chinese.misc-0.1.2/chinese.misc/R/second_dtm.R |only chinese.misc-0.1.2/chinese.misc/R/seg_file.R | 17 - chinese.misc-0.1.2/chinese.misc/R/slim_text.R | 19 + chinese.misc-0.1.2/chinese.misc/R/tryscAn.R |only chinese.misc-0.1.2/chinese.misc/R/zzz.r | 18 - chinese.misc-0.1.2/chinese.misc/man/DEFAULT_control1.Rd | 13 chinese.misc-0.1.2/chinese.misc/man/DEFAULT_control2.Rd | 8 chinese.misc-0.1.2/chinese.misc/man/DEFAULT_cutter.Rd | 1 chinese.misc-0.1.2/chinese.misc/man/chinese.misc-package.Rd | 5 chinese.misc-0.1.2/chinese.misc/man/corp_or_dtm.Rd | 115 +++++--- chinese.misc-0.1.2/chinese.misc/man/is_positive_integer.Rd | 6 chinese.misc-0.1.2/chinese.misc/man/m2doc.Rd | 8 chinese.misc-0.1.2/chinese.misc/man/make_stoplist.Rd | 16 - chinese.misc-0.1.2/chinese.misc/man/scancn.Rd | 1 chinese.misc-0.1.2/chinese.misc/man/seg_file.Rd | 3 chinese.misc-0.1.2/chinese.misc/man/slim_text.Rd | 15 - 37 files changed, 453 insertions(+), 278 deletions(-)