Wed, 08 Mar 2017

Package RNifti updated to version 0.5.0 with previous version 0.4.0 dated 2017-02-03

Title: Fast R and C++ Access to NIfTI Images
Description: Provides very fast access to images stored in the NIfTI-1 file format <http://nifti.nimh.nih.gov/nifti-1>, with seamless synchronisation between compiled C and interpreted R code. Not to be confused with 'RNiftyReg', which provides tools for image registration.
Author: Jon Clayden [cre, aut], Bob Cox [aut], Mark Jenkinson [aut], Rick Reynolds [ctb], Kate Fissell [ctb], Jean-loup Gailly [cph], Mark Adler [cph]
Maintainer: Jon Clayden <code@clayden.org>

Diff between RNifti versions 0.4.0 dated 2017-02-03 and 0.5.0 dated 2017-03-08

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Package mombf updated to version 1.9.4 with previous version 1.9.3 dated 2017-03-07

Title: Moment and Inverse Moment Bayes Factors
Description: Model selection and parameter estimation based on non-local and Zellner priors. Bayes factors, marginal densities and variable selection in regression setups. Routines to sample, evaluate prior densities, distribution functions and quantiles are included.
Author: David Rossell, John D. Cook, Donatello Telesca, P. Roebuck
Maintainer: David Rossell <rosselldavid@gmail.com>

Diff between mombf versions 1.9.3 dated 2017-03-07 and 1.9.4 dated 2017-03-08

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Package imputeTS updated to version 1.9 with previous version 1.8 dated 2017-01-25

Title: Time Series Missing Value Imputation
Description: Imputation (replacement) of missing values in univariate time series.
Author: Steffen Moritz
Maintainer: Steffen Moritz <steffen.moritz10@gmail.com>

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Package colourvision updated to version 1.0 with previous version 0.1 dated 2016-11-10

Title: Colour Vision Models
Description: Colour vision models, colour spaces and colour thresholds. Includes Vorobyev & Osorio Receptor Noise Limited models, Chittka colour hexagon, and Endler & Mielke model. Models have been extended to accept any number of photoreceptor types.
Author: Felipe M. Gawryszewski
Maintainer: Felipe Malheiros Gawrysewski <f.gawry@gmail.com>

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Package bdvis updated to version 0.2.15 with previous version 0.2.9 dated 2016-11-20

Title: Biodiversity Data Visualizations
Description: Provides a set of functions to create basic visualizations to quickly preview different aspects of biodiversity information such as inventory completeness, extent of coverage (taxonomic, temporal and geographic), gaps and biases.
Author: Vijay Barve <vijay.barve@gmail.com>, Javier Otegui <javier.otegui@gmail.com>
Maintainer: Vijay Barve <vijay.barve@gmail.com>

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Package Ultimixt updated to version 2.1 with previous version 2.0 dated 2015-12-18

Title: Bayesian Analysis of Location-Scale Mixture Models using a Weakly Informative Prior
Description: A generic reference Bayesian analysis of unidimensional mixture distributions obtained by a location-scale parameterisation of the model is implemented. The including functions simulate and summarize posterior samples for location-scale mixture models using a weakly informative prior. There is no need to define priors for scale-location parameters except two hyperparameters in which are associated with a Dirichlet prior for weights and a simplex.
Author: Kaniav Kamary, Kate Lee
Maintainer: Kaniav Kamary <kamary@ceremade.dauphine.fr>

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Package oceanmap updated to version 0.0.3 with previous version 0.0.2 dated 2016-09-16

Title: A Plotting Toolbox for 2D Oceanographic Data
Description: Plotting toolbox for 2D oceanographic data (satellite data, sst, chla, ocean fronts & bathymetry). Recognized classes and formats include ncdf4, Raster, '.nc' and '.gz' files.
Author: Robert K. Bauer
Maintainer: Robert K. Bauer <robert.bauer@ird.fr>

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Package mvctm updated to version 1.1 with previous version 1.0 dated 2014-05-16

Title: Multivariate Variance Components Tests for Multilevel Data
Description: Permutation tests for variance components for 2-level, 3-level and 4-level data with univariate or multivariate responses.
Author: Denis Larocque
Maintainer: Denis Larocque <denis.larocque@hec.ca>

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Package GerminaR updated to version 1.1 with previous version 1.0 dated 2016-12-24

Title: Germination Indexes for Seed Germination Variables for Ecophysiological Studies
Description: Different types of seed indexes, rates and visualization techniques are used to provide a robust approach for germination data analysis. The package aims to make available germination seed indexes and graphical functions to analyze germination seed data.
Author: Flavio Lozano Isla [aut, cre], Omar Benites Alfaro [aut], Denise Garcia de Santana [ctb], Marli A. Ranal [ctb], Marcelo F. Pompelli [aut, ths], Federal University of Pernambuco [cph] (Register of application), Federal Rural University of Pernambuco [cph] (Post Graduate Program)
Maintainer: Flavio Lozano Isla <flavjack@gmail.com>

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Package WhiteStripe updated to version 2.2.2 with previous version 1.1.1 dated 2015-05-21

Title: White Matter Normalization for Magnetic Resonance Images using Whitestripe
Description: Shinohara et. al (2014) <DOI:10.1016/j.nicl.2014.08.008> introduced Whitestripe, an intensity-based normalization of T1 and T2 images, where normal appearing white matter performs well, but requires segmentation. This method performs white matter mean and standard deviation estimates on data that has been rigidly-registered to the MNI template and uses histogram-based methods.
Author: R. Taki Shinohara, John Muschelli
Maintainer: John Muschelli <muschellij2@gmail.com>

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Package rgl updated to version 0.98.1 with previous version 0.97.0 dated 2017-01-10

Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including functions modelled on base graphics (plot3d(), etc.) as well as functions for constructing representations of geometric objects (cube3d(), etc.). Output may be on screen using OpenGL, or to various standard 3D file formats including WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler <dadler@uni-goettingen.de>, Duncan Murdoch <murdoch@stats.uwo.ca>, and others (see README)
Maintainer: Duncan Murdoch <murdoch@stats.uwo.ca>

Diff between rgl versions 0.97.0 dated 2017-01-10 and 0.98.1 dated 2017-03-08

 DESCRIPTION                                   |    9 
 MD5                                           |   75 
 NAMESPACE                                     |    9 
 R/Sweave_knitr.R                              |    9 
 R/persp3d.R                                   |   16 
 R/playwidget.R                                |   87 
 R/rglcontroller.R                             |   46 
 R/rglwidget.R                                 |    2 
 R/subscenes.R                                 |    2 
 README                                        |    3 
 build/vignette.rds                            |binary
 configure                                     |  167 
 configure.ac                                  |   11 
 configure.win                                 |   13 
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 43 files changed, 6065 insertions(+), 9680 deletions(-)

More information about rgl at CRAN
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Package rdrobust updated to version 0.96 with previous version 0.95 dated 2016-12-13

Title: Robust Data-Driven Statistical Inference in Regression-Discontinuity Designs
Description: Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust() to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect() to perform bandwidth selection for the different procedures implemented, and rdplot() to conduct exploratory data analysis (RD plots).
Author: Sebastian Calonico <scalonico@bus.miami.edu>, Matias D. Cattaneo <cattaneo@umich.edu>, Max H. Farrell <max.farrell@chicagobooth.edu>, Rocio Titiunik <titiunik@umich.edu>
Maintainer: Sebastian Calonico <scalonico@bus.miami.edu>

Diff between rdrobust versions 0.95 dated 2016-12-13 and 0.96 dated 2017-03-08

 DESCRIPTION             |   10 +--
 MD5                     |   18 +++---
 R/functions.R           |    1 
 R/rdbwselect.R          |   82 ++++++++++++++-----------------
 R/rdplot.R              |  126 ++++++++++++++++++++++++++----------------------
 R/rdrobust.R            |   28 ++++++++--
 man/rdbwselect.Rd       |   57 ++++++++++-----------
 man/rdplot.Rd           |   46 +++++++++--------
 man/rdrobust-package.Rd |    4 -
 man/rdrobust.Rd         |   80 +++++++++++++++++-------------
 10 files changed, 245 insertions(+), 207 deletions(-)

More information about rdrobust at CRAN
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New package canvasXpress with initial version 0.14.7
Package: canvasXpress
Version: 0.14.7
Title: Visualization Package for CanvasXpress in R
Description: Enables creation of visualizations using the CanvasXpress framework in R. CanvasXpress is a standalone JavaScript library for reproducible research with complete tracking of data and end-user modifications stored in a single PNG image that can be played back. See <http://canvasxpress.org> for more information.
Type: Package
License: GPL-3
Encoding: UTF-8
Author: Isaac Neuhaus [aut, cre], Connie Brett [ctb]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Depends: R (>= 3.2.1)
Imports: htmlwidgets (>= 0.7)
RoxygenNote: 5.0.1
Suggests: shiny (>= 0.13.2), knitr, rmarkdown, testthat, limma, grDevices, covr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-03-08 15:38:33 UTC; cb
Repository: CRAN
Date/Publication: 2017-03-08 20:11:29

More information about canvasXpress at CRAN
Permanent link

Package PSM (with last version 0.8-10) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-09-10 0.8-10
2013-03-21 0.8-8

Permanent link
Package SPOT updated to version 2.0.1 with previous version 1.1.0 dated 2016-06-13

Title: Sequential Parameter Optimization Toolbox
Description: A set of tools for model based optimization and tuning of algorithms. It includes surrogate models, optimizers and design of experiment approaches. The main interface is spot, which uses sequentially updated surrogate models for the purpose of efficient optimization. The main goal is to ease the burden of objective function evaluations, when a single evaluation requires a significant amount of resources.
Author: Thomas Bartz-Beielstein [aut], Joerg Stork [aut], Martin Zaefferer [aut, cre], Margarita Rebolledo [ctb], Christian Lasarczyk [ctb], Joerg Ziegenhirt [ctb], Wolfgang Konen [ctb], Oliver Flasch [ctb], Patrick Koch [ctb], Martina Friese [ctb]
Maintainer: Martin Zaefferer <martin.zaefferer@gmx.de>

Diff between SPOT versions 1.1.0 dated 2016-06-13 and 2.0.1 dated 2017-03-08

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Package sperrorest updated to version 1.0.0 with previous version 0.2-1 dated 2012-06-20

Title: Perform Spatial Error Estimation and Variable Importance in Parallel
Description: Implements spatial error estimation and permutation-based variable importance measures for predictive models using spatial cross-validation and spatial block bootstrap.
Author: Alexander Brenning [aut, cre], Patrick Schratz [aut], Tobias Herrmann [aut]
Maintainer: Alexander Brenning <alexander.brenning@uni-jena.de>

Diff between sperrorest versions 0.2-1 dated 2012-06-20 and 1.0.0 dated 2017-03-08

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Permanent link

Package QuantumClone updated to version 1.0.0.4 with previous version 1.0.0.3 dated 2017-03-02

Title: Clustering Mutations using High Throughput Sequencing (HTS) Data
Description: Using HTS data, clusters mutations in order to recreate putative clones from the data provided. It requires genotype at the location of the variant as well as the depth of coverage and number of reads supporting the mutation. Additional information may be provided, such as the contamination in the tumor sample. This package also provides a function QuantumCat() which simulates data obtained from tumor sequencing.
Author: Paul Deveau [aut, cre]
Maintainer: Paul Deveau <paul.deveau@curie.fr>

Diff between QuantumClone versions 1.0.0.3 dated 2017-03-02 and 1.0.0.4 dated 2017-03-08

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More information about QuantumClone at CRAN
Permanent link

Package prop.comb.RR updated to version 1.2 with previous version 1.1 dated 2015-09-18

Title: Analyzing Combination of Proportions and Relative Risk
Description: Carrying out inferences about any linear combination of proportions and the ratio of two proportions.
Author: Maria Alvarez and Javier Roca-Pardinas
Maintainer: Maria Alvarez <maria.alvarez@uvigo.es>

Diff between prop.comb.RR versions 1.1 dated 2015-09-18 and 1.2 dated 2017-03-08

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More information about prop.comb.RR at CRAN
Permanent link

Package pangaear updated to version 0.3.0 with previous version 0.2.4 dated 2016-10-07

Title: Client for the 'Pangaea' Database
Description: Tools to interact with the 'Pangaea' Database (<https://www.pangaea.de>), including functions for searching for data, fetching 'datasets' by 'dataset' 'ID', and working with the 'Pangaea' 'OAI-PMH' service.
Author: Scott Chamberlain [aut, cre], Kara Woo [aut], Andrew MacDonald [aut], Naupaka Zimmerman [aut], Gavin Simpson [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

Diff between pangaear versions 0.2.4 dated 2016-10-07 and 0.3.0 dated 2017-03-08

 DESCRIPTION                         |   21 +--
 LICENSE                             |    2 
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 NAMESPACE                           |    4 
 NEWS.md                             |   23 +++
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 README.md                           |  245 ++++++++++++++++++++++--------------
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 32 files changed, 540 insertions(+), 275 deletions(-)

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Permanent link

Package lmomco updated to version 2.2.7 with previous version 2.2.6 dated 2017-03-06

Title: L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments, and Many Distributions
Description: Extensive functions for L-moments (LMs) and probability-weighted moments (PWMs), parameter estimation for distributions, LM computation for distributions, and L-moment ratio diagrams. Maximum likelihood and maximum product of spacings estimation are also available. LMs for right-tail and left-tail censoring by known or unknown threshold and by indicator variable are available. Asymmetric (asy) trimmed LMs (TL-moments, TLMs) are supported. LMs of residual (resid) and reversed (rev) resid life are implemented along with 13 quantile function operators for reliability and survival analyses. Exact analytical bootstrap estimates of order statistics, LMs, and variances- covariances of LMs are provided. The Harri-Coble Tau34-squared Normality Test is available. Distribution support with "L" (LMs), "TL" (TLMs) and added (+) support for right-tail censoring (RC) encompasses: Asy Exponential (Exp) Power [L], Asy Triangular [L], Cauchy [TL], Eta-Mu [L], Exp. [L], Gamma [L], Generalized (Gen) Exp Poisson [L], Gen Extreme Value [L], Gen Lambda [L,TL], Gen Logistic [L), Gen Normal [L], Gen Pareto [L+RC, TL], Govindarajulu [L], Gumbel [L], Kappa [L], Kappa-Mu [L], Kumaraswamy [L], Laplace [L], Linear Mean Resid. Quantile Function [L], Normal [L], 3-p log-Normal [L], Pearson Type III [L], Rayleigh [L], Rev-Gumbel [L+RC], Rice/Rician [L], Slash [TL], 3-p Student t [L], Truncated Exponential [L], Wakeby [L], and Weibull [L]. Multivariate sample L-comoments (LCMs) are implemented to measure asymmetric associations.
Author: William Asquith
Maintainer: William Asquith <william.asquith@ttu.edu>

Diff between lmomco versions 2.2.6 dated 2017-03-06 and 2.2.7 dated 2017-03-08

 DESCRIPTION        |    6 +++---
 MD5                |    6 +++---
 NEWS               |    7 +++++++
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New package badger with initial version 0.0.2
Package: badger
Title: Badge for R Package
Version: 0.0.2
Authors@R: person("Guangchuang", "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "cre"))
Description: Query information and generate badge for using in README and GitHub Pages.
Depends: R (>= 3.3.0)
Imports: dlstats, rvcheck
License: Artistic-2.0
ByteCompile: true
URL: https://github.com/GuangchuangYu/badger
BugReports: https://github.com/GuangchuangYu/badger/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2017-03-08 10:11:03 UTC; guangchuangyu
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Repository: CRAN
Date/Publication: 2017-03-08 16:37:23

More information about badger at CRAN
Permanent link

Package strvalidator updated to version 1.9.0 with previous version 1.8.0 dated 2016-10-03

Title: Process Control and Internal Validation of Forensic STR Kits
Description: An open source platform for validation and process control. Tools to analyse data from internal validation of forensic short tandem repeat (STR) kits are provided. The tools are developed to provide the necessary data to conform with guidelines for internal validation issued by the European Network of Forensic Science Institutes (ENFSI) DNA Working Group, and the Scientific Working Group on DNA Analysis Methods (SWGDAM). A front-end graphical user interface is provided. More information about each function can be found in the respective help documentation.
Author: Oskar Hansson
Maintainer: Oskar Hansson <oskhan@ous-hf.no>

Diff between strvalidator versions 1.8.0 dated 2016-10-03 and 1.9.0 dated 2017-03-08

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 154 files changed, 548 insertions(+), 421 deletions(-)

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Package rvcheck updated to version 0.0.8 with previous version 0.0.5 dated 2016-09-20

Title: R/Package Version Check
Description: Check latest release version of R and R package (both in 'CRAN', 'Bioconductor' or 'Github').
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>

Diff between rvcheck versions 0.0.5 dated 2016-09-20 and 0.0.8 dated 2017-03-08

 DESCRIPTION             |   10 +++++-----
 MD5                     |   10 ++++++----
 NAMESPACE               |    2 +-
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 7 files changed, 21 insertions(+), 13 deletions(-)

More information about rvcheck at CRAN
Permanent link

Package MMDai updated to version 1.1.0 with previous version 1.0.1 dated 2017-02-24

Title: Multivariate Multinomial Distribution Approximation and Imputation for Incomplete Data
Description: Fit incomplete categorical data with infinite mixture of multinomial distribution (Dunson and Xing (2009) <DOI:10.1198/jasa.2009.tm08439>). Perform efficient missing data imputation and other statistical inference based on joint distribution estimation.
Author: Chaojie Wang
Maintainer: Chaojie Wang <wang910930@163.com>

Diff between MMDai versions 1.0.1 dated 2017-02-24 and 1.1.0 dated 2017-03-08

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Permanent link

New package BNSL with initial version 0.1.0
Package: BNSL
Type: Package
Title: Bayesian Network Structure Learning
Version: 0.1.0
Date: 2017-03-03
Author: Joe Suzuki and Jun Kawahara
Maintainer: Joe Suzuki <j-suzuki@sigmath.es.osaka-u.ac.jp>
Depends: bnlearn, igraph
Description: From a given dataframe, this package learns its Bayesian network structure based on a selected score.
License: GPL (>= 2)
Imports: Rcpp (>= 0.12.0)
LinkingTo: Rcpp
Packaged: 2017-03-08 07:56:19 UTC; Prof-Joe
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2017-03-08 10:58:48

More information about BNSL at CRAN
Permanent link

Package BCellMA updated to version 0.3.4 with previous version 0.3.2 dated 2016-11-29

Title: B Cell Receptor Somatic Hyper Mutation Analysis
Description: Includes a set of functions to analyze for instance nucleotide frequencies as well as transition and transversion. Can reconstruct germline sequences based on the international ImMunoGeneTics information system (IMGT/HighV-QUEST) outputs, calculate and plot the difference (%) of nucleotides at 6 positions around a mutation to identify and characterize hotspot motifs as well as calculate and plot average mutation frequencies of nucleotide mutations resulting in amino acid substitution.
Author: Olena Ohlei <olena.ohlei@student.uni-luebeck.de>
Maintainer: Olena Ohlei <olena.ohlei@student.uni-luebeck.de>

Diff between BCellMA versions 0.3.2 dated 2016-11-29 and 0.3.4 dated 2017-03-08

 DESCRIPTION                  |    8 ++---
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 NAMESPACE                    |    3 ++
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Package nhlscrapr updated to version 1.8.1 with previous version 1.8 dated 2014-10-21

Title: Compiling the NHL Real Time Scoring System Database for easy use in R
Description: Compiling the NHL Real Time Scoring System Database for easy use in R.
Author: A.C. Thomas, Samuel L. Ventura
Maintainer: ORPHANED

Diff between nhlscrapr versions 1.8 dated 2014-10-21 and 1.8.1 dated 2017-03-08

 DESCRIPTION   |   13 ++++++++-----
 MD5           |    4 ++--
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 3 files changed, 11 insertions(+), 7 deletions(-)

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Permanent link

New package WebGestaltR with initial version 0.0.8
Package: WebGestaltR
Type: Package
Title: The R Version of WebGestalt
Version: 0.0.8
Date: 2017-03-07
Author: Jing Wang <jingwang.uestc@gmail.com>
Maintainer: Jing Wang <jingwang.uestc@gmail.com>
Description: The web version WebGestalt <http://www.webgestalt.org> supports 12 organisms, 324 gene identifiers and 150,937 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis. The user-friendly output interface allow interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneous analyze multiple gene lists.
License: LGPL
LazyLoad: yes
Depends: R (>= 3.3)
Imports: methods, data.table (>= 1.10.0), parallel (>= 3.3.2), doParallel (>= 1.0.10), foreach (>= 1.4.0), PythonInR (>= 0.1-3), pkgmaker (>= 0.22), rjson (>= 0.2.15)
Collate: zzz.R WebGestaltR.R WebGestaltR_batch.R IDMapping.R GOSlimSummary.R listGeneSet.R listIDType.R listOrganism.R readGMT.R listReferenceSet.R listArchiveURL.R formatCheck.R
SystemRequirements: Java, Python
NeedsCompilation: no
Packaged: 2017-03-07 18:29:30 UTC; jingwang
Repository: CRAN
Date/Publication: 2017-03-08 08:46:34

More information about WebGestaltR at CRAN
Permanent link

Package tempR updated to version 0.9.9.10 with previous version 0.9.9.9 dated 2016-12-21

Title: Temporal Sensory Data Analysis
Description: Analysis and visualization of data from temporal sensory methods, including for temporal check-all-that-apply (TCATA) and temporal dominance of sensations (TDS).
Author: J. C. Castura [aut, cre]
Maintainer: J. C. Castura <jcastura@compusense.com>

Diff between tempR versions 0.9.9.9 dated 2016-12-21 and 0.9.9.10 dated 2017-03-08

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Package STMedianPolish updated to version 0.2 with previous version 0.1 dated 2015-06-21

Title: Spatio-Temporal Median Polish
Description: Analyses spatio-temporal data, decomposing data in n-dimensional arrays and using the median polish technique.
Author: William Martínez [aut, cre], Melo Carlos [aut], Melo Oscar [aut].
Maintainer: William Martínez <willimarti2008@gmail.com>

Diff between STMedianPolish versions 0.1 dated 2015-06-21 and 0.2 dated 2017-03-08

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Package SLDAssay updated to version 1.6 with previous version 1.5 dated 2016-07-19

Title: Software for Analyzing Limiting Dilution Assays
Description: Calculates maximum likelihood estimate, exact and asymptotic confidence intervals, and exact and asymptotic goodness of fit p-values for infectious units per million (IUPM) from serial limiting dilution assays. This package uses the likelihood equation, exact PGOF, and exact confidence intervals described in Meyers et al. (1994) <http://jcm.asm.org/content/32/3/732.full.pdf>. This software is also implemented as a web application through the Shiny R package <https://iupm.shinyapps.io/sldassay/>.
Author: Michael Hudgens, Ilana Trumble, Andrew Allmon
Maintainer: Ilana Trumble <itrumble@unc.edu>

Diff between SLDAssay versions 1.5 dated 2016-07-19 and 1.6 dated 2017-03-08

 DESCRIPTION     |   12 ++++++------
 MD5             |    6 +++---
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 man/get.iupm.Rd |   14 +++++++-------
 4 files changed, 26 insertions(+), 25 deletions(-)

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Package RRreg updated to version 0.6.2 with previous version 0.6.1 dated 2016-01-12

Title: Correlation and Regression Analyses for Randomized Response Data
Description: Univariate and multivariate methods to analyze randomized response (RR) survey designs (e.g., Warner, S. L. (1965). Randomized response: A survey technique for eliminating evasive answer bias. Journal of the American Statistical Association, 60, 63–69). <doi:10.2307/2283137> Besides univariate estimates of true proportions, RR variables can be used for correlations, as dependent variable in a logistic regression (with or without random effects), as predictors in a linear regression, or as dependent variable in a beta-binomial ANOVA. For simulation and bootstrap purposes, RR data can be generated according to several models.
Author: Daniel W. Heck [aut, cre], Morten Moshagen [aut]
Maintainer: Daniel W. Heck <heck@uni-mannheim.de>

Diff between RRreg versions 0.6.1 dated 2016-01-12 and 0.6.2 dated 2017-03-08

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Package rmumps updated to version 5.0.1.12-1 with previous version 5.0.1.12 dated 2017-03-06

Title: Wrapper for MUMPS Library
Description: Some basic features of MUMPS (Multifrontal Massively Parallel sparse direct Solver) are wrapped in a class whose methods can be used for sequentially solving a sparse linear system (symmetric or not) with one or many right hand sides (dense or sparse). There is a possibility to do separately symbolic analysis, LU factorization and system solving.
Author: Serguei Sokol
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>

Diff between rmumps versions 5.0.1.12 dated 2017-03-06 and 5.0.1.12-1 dated 2017-03-08

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New package readOffice with initial version 0.2.2
Package: readOffice
Type: Package
Title: Read Text Out of Modern Office Files
Version: 0.2.2
Author: Mark Ewing
Maintainer: Mark Ewing <b.mark@ewingsonline.com>
Description: Reads in text from 'unstructured' modern Microsoft Office files (XML based files) such as Word and PowerPoint. This does not read in structured data (from Excel or Access) as there are many other great packages to that do so already.
License: Unlimited
Encoding: UTF-8
LazyData: true
Imports: xml2 (>= 1.0.0), rvest (>= 0.3.2), purrr (>= 0.2.2), magrittr (>= 1.5)
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-03-02 16:30:51 UTC; u772700
Repository: CRAN
Date/Publication: 2017-03-08 08:22:32

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New package qGaussian with initial version 0.1.4
Package: qGaussian
Title: The q-Gaussian Distribution
Version: 0.1.4
Author: Emerson Luis de Santa Helena <elsh@ufs.br> Wagner Santos de Lima <wagnersantos.ufs@hotmail.com>
Maintainer: Wagner Santos de Lima <wagnersantos.ufs@hotmail.com>
Description: Density, distribution function, quantile function and random generation for the q-gaussian distribution with parameters mu and sig.
Depends: R (>= 3.2.0)
License: GPL
LazyData: true
RoxygenNote: 5.0.1
Imports: robustbase , zipfR , stats
NeedsCompilation: no
Packaged: 2017-03-07 17:38:27 UTC; ELSH
Repository: CRAN
Date/Publication: 2017-03-08 08:22:28

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Package PanJen updated to version 1.3 with previous version 1.1 dated 2017-02-27

Title: A Semi-Parametric Test for Specifying Functional Form
Description: A central decision in a parametric regression is how to specify the relation between an dependent variable and each explanatory variable. This package provides a semi-parametric tool for comparing different transformations of an explanatory variables in a parametric regression. The functions is relevant in a situation, where you would use a box-cox or Box-Tidwell transformations. In contrast to the classic power-transformations, the methods in this package allows for theoretical driven user input and the possibility to compare with a non-parametric transformation.
Author: Toke Emil Panduro <tepp@ifro.ku.dk>, Cathrine Ulla Jensen <cuj@ifro.ku.dk>
Maintainer: Cathrine Ulla Jensen <cuj@ifro.ku.dk>

Diff between PanJen versions 1.1 dated 2017-02-27 and 1.3 dated 2017-03-08

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New package NHLData with initial version 1.0.0
Package: NHLData
Type: Package
Title: Scores for Every Season Since the Founding of the NHL in 1917
Version: 1.0.0
Author: D. Lukke Sweet
Maintainer: D. Lukke Sweet <dls229@zips.uakron.edu>
Depends: R (>= 2.10)
Description: Each dataset contains scores for every game during a specific season of the NHL.
License: CC0
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2017-03-07 21:17:41 UTC; Lukke
Repository: CRAN
Date/Publication: 2017-03-08 08:22:06

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Package MBA updated to version 0.0-9 with previous version 0.0-8 dated 2014-04-29

Title: Multilevel B-Spline Approximation
Description: Functions to interpolate irregularly and regularly spaced data using Multilevel B-spline Approximation (MBA). Functions call portions of the SINTEF Multilevel B-spline Library written by Øyvind Hjelle which implements methods developed by Lee, Wolberg and Shin (1997; <doi:10.1109/2945.620490>).
Author: Andrew Finley [aut, cre], Sudipto Banerjee [aut], Øyvind Hjelle [aut], Roger Bivand [ctb]
Maintainer: Andrew Finley <finleya@msu.edu>

Diff between MBA versions 0.0-8 dated 2014-04-29 and 0.0-9 dated 2017-03-08

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New package liureg with initial version 1.0
Package: liureg
Type: Package
Title: Liu Regression with Liu Biasing Parameters and Statistics
Version: 1.0
Date: 2017-03-07
Author: Muhammad Imdadullah, Dr. Muhammad Aslam
Maintainer: Muhammad Imdadullah <mimdadasad@gmail.com>
Description: Linear Liu regression coefficient's estimation and testing with different Liu related measures such as MSE, R-squared etc.
License: GPL (>= 2.0)
LazyData: TRUE
Note: Department of Statistics, Bahauddin Zakariya University, Multan, Pakistan.
NeedsCompilation: no
Packaged: 2017-03-07 16:06:23 UTC; Muhammad
Repository: CRAN
Date/Publication: 2017-03-08 08:22:26

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Package largeVis updated to version 0.2 with previous version 0.1.10.2 dated 2016-11-26

Title: High-Quality Visualizations of Large, High-Dimensional Datasets
Description: Implements the largeVis algorithm (see Tang, et al. (2016) <https://arxiv.org/abs/1602.00370>) for visualizing very large high-dimensional datasets. Also very fast search for approximate nearest neighbors; outlier detection; and optimized implementations of the HDBSCAN*, DBSCAN and OPTICS clustering algorithms; plotting functions for visualizing the above.
Author: Amos B. Elberg
Maintainer: Amos Elberg <amos.elberg@gmail.com>

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Package ggsci updated to version 2.4 with previous version 2.0 dated 2016-11-21

Title: Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'
Description: A collection of 'ggplot2' color palettes inspired by plots in scientific journals, data visualization libraries, science fiction movies, and TV shows.
Author: Nan Xiao <me@nanx.me>, Miaozhu Li <miaozhu.li@duke.edu>
Maintainer: Nan Xiao <me@nanx.me>

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Package ecm updated to version 0.9.0 with previous version 0.8.0 dated 2017-03-01

Title: Build Error Correction Models
Description: Functions for easy building of error correction models (ECM) for time series regression.
Author: Gaurav Bansal
Maintainer: Gaurav Bansal <gaurbans@gmail.com>

Diff between ecm versions 0.8.0 dated 2017-03-01 and 0.9.0 dated 2017-03-08

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New package CNLTtsa with initial version 0.1
Package: CNLTtsa
Type: Package
Title: Complex-Valued Wavelet Lifting for Univariate and Bivariate Time Series Analysis
Version: 0.1
Date: 2017-03-6
Author: Jean Hamilton [aut], Matt Nunes [aut, cre], Marina Knight [ctb], Piotr Fryzlewicz [ctb]
Authors@R: c(person("Jean", "Hamilton", role="aut"),person("Matt","Nunes", role=c("aut","cre"),email="m.nunes@lancaster.ac.uk"),person("Marina", "Knight", role="ctb"), person("Piotr", "Fryzlewicz", role="ctb"))
Maintainer: Matt Nunes <m.nunes@lancaster.ac.uk>
Description: Implementations of recent complex-valued wavelet spectral procedures for analysis of irregularly sampled signals.
License: GPL-2
Depends: R (>= 2.10), adlift, nlt, CNLTreg, fields
NeedsCompilation: no
Packaged: 2017-03-06 11:57:02 UTC; nunes
Repository: CRAN
Date/Publication: 2017-03-08 08:22:01

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Package CatEncoders updated to version 0.1.1 with previous version 0.1.0 dated 2016-09-13

Title: Encoders for Categorical Variables
Description: Contains some commonly used categorical variable encoders, such as 'LabelEncoder' and 'OneHotEncoder'. Inspired by the encoders implemented in Python 'sklearn.preprocessing' package (see <http://scikit-learn.org/stable/modules/preprocessing.html>).
Author: nl zhang
Maintainer: nl zhang <setseed2016@gmail.com>

Diff between CatEncoders versions 0.1.0 dated 2016-09-13 and 0.1.1 dated 2017-03-08

 DESCRIPTION |    8 ++++----
 MD5         |    4 ++--
 R/basic.R   |    3 +--
 3 files changed, 7 insertions(+), 8 deletions(-)

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Package binomSamSize updated to version 0.1-5 with previous version 0.1-4 dated 2016-12-05

Title: Confidence Intervals and Sample Size Determination for a Binomial Proportion under Simple Random Sampling and Pooled Sampling
Description: A suite of functions to compute confidence intervals and necessary sample sizes for the parameter p of the Bernoulli B(p) distribution under simple random sampling or under pooled sampling. Such computations are e.g. of interest when investigating the incidence or prevalence in populations. The package contains functions to compute coverage probabilities and coverage coefficients of the provided confidence intervals procedures. Sample size calculations are based on expected length.
Author: Michael Höhle [aut, cre], Wei Liu [ctb]
Maintainer: Michael Höhle <hoehle@math.su.se>

Diff between binomSamSize versions 0.1-4 dated 2016-12-05 and 0.1-5 dated 2017-03-08

 DESCRIPTION        |    9 +++++----
 MD5                |    9 +++++----
 NAMESPACE          |    2 +-
 R/ciss.liubailey.R |    4 ++--
 src/register.c     |only
 src/wei_helper.c   |   10 +++++-----
 6 files changed, 18 insertions(+), 16 deletions(-)

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Package BIEN updated to version 1.1.0 with previous version 1.0.0 dated 2017-01-12

Title: Tools for Accessing the Botanical Information and Ecology Network Database
Description: Provides Tools for Accessing the Botanical Information and Ecology Network Database. The BIEN database contains cleaned and standardized botanical data including occurrence, trait, plot and taxonomic data (See <http://Bien.nceas.ucsb.edu/bien/> for more Information). This package provides functions that query the BIEN database by constructing and executing optimized SQL queries.
Author: Brian Maitner [aut, cre]
Maintainer: Brian Maitner <bmaitner@gmail.com>

Diff between BIEN versions 1.0.0 dated 2017-01-12 and 1.1.0 dated 2017-03-08

 BIEN-1.0.0/BIEN/man/BIEN_sql.Rd                            |only
 BIEN-1.1.0/BIEN/DESCRIPTION                                |   16 
 BIEN-1.1.0/BIEN/MD5                                        |  123 
 BIEN-1.1.0/BIEN/NEWS                                       |   18 
 BIEN-1.1.0/BIEN/R/BIEN.R                                   | 1605 ++++++++-----
 BIEN-1.1.0/BIEN/build/vignette.rds                         |binary
 BIEN-1.1.0/BIEN/inst/doc/BIEN.Rmd                          |   14 
 BIEN-1.1.0/BIEN/inst/doc/BIEN.html                         |   19 
 BIEN-1.1.0/BIEN/man/BIEN.Rd                                |    3 
 BIEN-1.1.0/BIEN/man/BIEN_list_all.Rd                       |    7 
 BIEN-1.1.0/BIEN/man/BIEN_list_country.Rd                   |    8 
 BIEN-1.1.0/BIEN/man/BIEN_list_county.Rd                    |    7 
 BIEN-1.1.0/BIEN/man/BIEN_list_shapefile.Rd                 |    7 
 BIEN-1.1.0/BIEN/man/BIEN_list_state.Rd                     |    7 
 BIEN-1.1.0/BIEN/man/BIEN_metadata_citation.Rd              |only
 BIEN-1.1.0/BIEN/man/BIEN_metadata_database_version.Rd      |    9 
 BIEN-1.1.0/BIEN/man/BIEN_metadata_match_data.Rd            |    9 
 BIEN-1.1.0/BIEN/man/BIEN_occurrence_box.Rd                 |    8 
 BIEN-1.1.0/BIEN/man/BIEN_occurrence_country.Rd             |    9 
 BIEN-1.1.0/BIEN/man/BIEN_occurrence_county.Rd              |   10 
 BIEN-1.1.0/BIEN/man/BIEN_occurrence_family.Rd              |    9 
 BIEN-1.1.0/BIEN/man/BIEN_occurrence_genus.Rd               |    9 
 BIEN-1.1.0/BIEN/man/BIEN_occurrence_records_per_species.Rd |    7 
 BIEN-1.1.0/BIEN/man/BIEN_occurrence_shapefile.Rd           |   10 
 BIEN-1.1.0/BIEN/man/BIEN_occurrence_species.Rd             |    9 
 BIEN-1.1.0/BIEN/man/BIEN_occurrence_state.Rd               |   10 
 BIEN-1.1.0/BIEN/man/BIEN_phylogeny_complete.Rd             |    3 
 BIEN-1.1.0/BIEN/man/BIEN_phylogeny_conservative.Rd         |    3 
 BIEN-1.1.0/BIEN/man/BIEN_plot_country.Rd                   |    7 
 BIEN-1.1.0/BIEN/man/BIEN_plot_dataset.Rd                   |    7 
 BIEN-1.1.0/BIEN/man/BIEN_plot_datasource.Rd                |    7 
 BIEN-1.1.0/BIEN/man/BIEN_plot_list_datasource.Rd           |    3 
 BIEN-1.1.0/BIEN/man/BIEN_plot_list_sampling_protocols.Rd   |    3 
 BIEN-1.1.0/BIEN/man/BIEN_plot_metadata.Rd                  |   15 
 BIEN-1.1.0/BIEN/man/BIEN_plot_name.Rd                      |    9 
 BIEN-1.1.0/BIEN/man/BIEN_plot_sampling_protocol.Rd         |   10 
 BIEN-1.1.0/BIEN/man/BIEN_plot_state.Rd                     |    7 
 BIEN-1.1.0/BIEN/man/BIEN_ranges_box.Rd                     |    8 
 BIEN-1.1.0/BIEN/man/BIEN_ranges_genus.Rd                   |    8 
 BIEN-1.1.0/BIEN/man/BIEN_ranges_intersect_species.Rd       |   15 
 BIEN-1.1.0/BIEN/man/BIEN_ranges_list.Rd                    |only
 BIEN-1.1.0/BIEN/man/BIEN_ranges_load_species.Rd            |    8 
 BIEN-1.1.0/BIEN/man/BIEN_ranges_shapefile.Rd               |    8 
 BIEN-1.1.0/BIEN/man/BIEN_ranges_species.Rd                 |    8 
 BIEN-1.1.0/BIEN/man/BIEN_stem_datasource.Rd                |only
 BIEN-1.1.0/BIEN/man/BIEN_stem_family.Rd                    |only
 BIEN-1.1.0/BIEN/man/BIEN_stem_genus.Rd                     |only
 BIEN-1.1.0/BIEN/man/BIEN_stem_species.Rd                   |   14 
 BIEN-1.1.0/BIEN/man/BIEN_taxonomy_family.Rd                |    7 
 BIEN-1.1.0/BIEN/man/BIEN_taxonomy_genus.Rd                 |    7 
 BIEN-1.1.0/BIEN/man/BIEN_taxonomy_species.Rd               |    7 
 BIEN-1.1.0/BIEN/man/BIEN_trait_family.Rd                   |   10 
 BIEN-1.1.0/BIEN/man/BIEN_trait_genus.Rd                    |   10 
 BIEN-1.1.0/BIEN/man/BIEN_trait_list.Rd                     |    7 
 BIEN-1.1.0/BIEN/man/BIEN_trait_mean.Rd                     |    5 
 BIEN-1.1.0/BIEN/man/BIEN_trait_species.Rd                  |   10 
 BIEN-1.1.0/BIEN/man/BIEN_trait_trait.Rd                    |   14 
 BIEN-1.1.0/BIEN/man/BIEN_trait_traitbyfamily.Rd            |   16 
 BIEN-1.1.0/BIEN/man/BIEN_trait_traitbygenus.Rd             |   16 
 BIEN-1.1.0/BIEN/man/BIEN_trait_traitbyspecies.Rd           |   16 
 BIEN-1.1.0/BIEN/man/BIEN_trait_traits_per_species.Rd       |    7 
 BIEN-1.1.0/BIEN/man/is_char.Rd                             |    1 
 BIEN-1.1.0/BIEN/man/is_log.Rd                              |    1 
 BIEN-1.1.0/BIEN/man/is_num.Rd                              |    1 
 BIEN-1.1.0/BIEN/tests                                      |only
 BIEN-1.1.0/BIEN/vignettes/BIEN.Rmd                         |   15 
 66 files changed, 1298 insertions(+), 928 deletions(-)

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Package alm (with last version 0.4.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-03-13 0.4.0
2014-10-29 0.3.1
2014-10-15 0.3.0
2014-06-18 0.1.9
2014-06-11 0.1.8
2014-04-22 0.1.6
2014-04-04 0.1.4
2013-11-01 0.1.1
2013-10-05 0.1

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Package CADStat (with last version 3.0.6) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-10-31 3.0.6

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