Title: Six Sigma Tools for Quality Control and Improvement
Description: Functions and utilities to perform
Statistical Analyses in the Six Sigma way.
Through the DMAIC cycle (Define, Measure, Analyze, Improve, Control),
you can manage several Quality Management studies:
Gage R&R, Capability Analysis, Control Charts, Loss Function Analysis,
etc. Data frames used in the books "Six Sigma with R" (Springer, 2012)
and "Quality Control with R" (Springer, 2015)
are also included in the package.
Author: Emilio L. Cano, Javier M. Moguerza, Mariano Prieto and Andrés Redchuk
Maintainer: Emilio L. Cano <emilio.lcano@uclm.es>
Diff between SixSigma versions 0.9-3 dated 2016-03-24 and 0.9-4 dated 2017-03-13
DESCRIPTION | 11 +--- MD5 | 92 ++++++++++++++++++------------------ NEWS | 10 +++ R/SixSigma-package.R | 2 R/ss.rr.R | 11 ++-- build/vignette.rds |binary inst/doc/HelicopterInstructions.pdf |binary inst/doc/ShewhartConstants.pdf |binary man/SixSigma.Rd | 11 +--- man/climProfiles.Rd | 7 +- man/outProfiles.Rd | 1 man/plotControlProfiles.Rd | 7 +- man/plotProfiles.Rd | 7 +- man/smoothProfiles.Rd | 7 +- man/ss.ca.yield.Rd | 7 +- man/ss.ca.z.Rd | 9 +-- man/ss.cc.Rd | 7 +- man/ss.cc.constants.Rd | 7 +- man/ss.ceDiag.Rd | 7 +- man/ss.ci.Rd | 7 +- man/ss.data.batteries.Rd | 1 man/ss.data.bills.Rd | 1 man/ss.data.bolts.Rd | 1 man/ss.data.ca.Rd | 1 man/ss.data.density.Rd | 1 man/ss.data.doe1.Rd | 1 man/ss.data.doe2.Rd | 1 man/ss.data.pastries.Rd | 1 man/ss.data.pb1.Rd | 1 man/ss.data.pb2.Rd | 1 man/ss.data.pb3.Rd | 1 man/ss.data.pb4.Rd | 1 man/ss.data.pc.Rd | 1 man/ss.data.pc.big.Rd | 1 man/ss.data.pc.r.Rd | 1 man/ss.data.rr.Rd | 1 man/ss.data.strings.Rd | 1 man/ss.data.thickness.Rd | 1 man/ss.data.thickness2.Rd | 1 man/ss.data.wbx.Rd | 1 man/ss.data.wby.Rd | 1 man/ss.heli.Rd | 7 +- man/ss.lf.Rd | 7 +- man/ss.lfa.Rd | 7 +- man/ss.pMap.Rd | 7 +- man/ss.rr.Rd | 11 ++-- man/ss.study.ca.Rd | 7 +- 47 files changed, 126 insertions(+), 151 deletions(-)
Title: Computational Geometry
Description: R interface to (some of) cddlib
(http://www.ifor.math.ethz.ch/~fukuda/cdd_home/cdd.html).
Converts back and forth between two representations of a convex polytope:
as solution of a set of linear equalities and inequalities and as
convex hull of set of points and rays.
Also does linear programming and redundant generator elimination
(for example, convex hull in n dimensions). All functions can use exact
infinite-precision rational arithmetic.
Author: Charles J. Geyer <charlie@stat.umn.edu> and
Glen D. Meeden <glen@stat.umn.edu>, incorporates code from
cddlib (ver 0.94f) written by Komei Fukuda <fukuda@ifor.math.ethz.ch>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>
Diff between rcdd versions 1.1-10 dated 2016-04-25 and 1.1-11 dated 2017-03-13
CHANGES | 2 DESCRIPTION | 10 - MD5 | 131 ++++++------- NAMESPACE | 2 R/all.intersect.R | 2 R/all.union.R | 2 R/allfaces.R | 4 R/d2q.R | 2 R/linearity.R | 4 R/lpcdd.R | 6 R/maximal.R | 2 R/q2d.R | 2 R/q2q.R | 2 R/qabs.R | 2 R/qdq.R | 2 R/qinv.R | 2 R/qmatmult.R | 2 R/qmax.R | 2 R/qmin.R | 2 R/qmq.R | 2 R/qneg.R | 2 R/qpq.R | 2 R/qprod.R | 2 R/qsign.R | 2 R/qsum.R | 2 R/qxq.R | 2 R/redundant.R | 4 R/scdd.R | 8 build/vignette.rds |binary configure | 476 +++++++++++++++++++++++++++---------------------- inst/doc/vinny.pdf |binary src/Makevars.in | 2 src/allfaces.c | 15 + src/cdd.h | 18 + src/cdd_f.h | 18 + src/cddcore.c | 1 src/cddcore_f.c | 16 - src/cddio.c | 17 + src/cddio_f.c | 13 - src/cddlib.c | 5 src/cddlib_f.c | 5 src/cddmp.h | 8 src/cddmp_f.h | 8 src/cddtypes.h | 8 src/cddtypes_f.h | 8 src/init.c | 10 - src/linearity.c | 18 + src/lpcdd.c | 78 ++++---- src/lpcdd_f.c | 2 src/q2d.c | 2 src/q2q.c | 7 src/qmatmult.c | 16 + src/qmin.c | 7 src/qo.c | 17 + src/qoq.c | 32 +-- src/qsign.c | 6 src/qsump.c | 10 - src/rcdd-win.def |only src/rcdd.h | 3 src/redund.c | 36 ++- src/scdd.c | 81 ++++---- src/setoper.c | 3 src/setoper.h | 7 tests/arith.R | 10 - tests/arith.Rout.save | 21 +- tests/subset.R | 30 +-- tests/subset.Rout.save | 40 ++-- 67 files changed, 715 insertions(+), 548 deletions(-)
Title: Determine Optimal Clustering Algorithm and Number of Clusters
Description: Cluster analysis using statistical and biological
validation measures for both continuous and count data.
Author: Michael Sekula <michael.sekula@louisville.edu>,
Somnath Datta <somnath.datta@louisville.edu>,
and Susmita Datta <susmita.datta@louisville.edu>
Maintainer: Michael Sekula <michael.sekula@louisville.edu>
Diff between optCluster versions 1.1.0 dated 2016-03-26 and 1.1.1 dated 2017-03-13
DESCRIPTION | 8 +++---- MD5 | 20 +++++++++--------- NAMESPACE | 4 +-- R/optCluster-Functions.R | 2 - R/optCluster-Methods.R | 44 +++++++++++++++++++++++++++++++++++++-- man/aggregPlot.Rd | 52 ++++++++++++++++++++++------------------------- man/optCluster-class.Rd | 32 +++++++++++++++++++++++----- man/optCluster.Rd | 49 ++++++++++++++++++++------------------------ man/optHeatmap.Rd | 5 ---- man/repRankAggreg.Rd | 18 ++++++++-------- man/valPlot.Rd | 7 +----- 11 files changed, 144 insertions(+), 97 deletions(-)
Title: Mathematical Modeling of Infectious Disease
Description: Tools for simulating mathematical models of infectious disease.
Epidemic model classes include deterministic compartmental models, stochastic
agent-based models, and stochastic network models. Network models use the
robust statistical methods of exponential-family random graph models (ERGMs)
from the Statnet suite of software packages in R. Standard templates for epidemic
modeling include SI, SIR, and SIS disease types. EpiModel features
an easy API for extending these templates to address novel scientific research aims.
Author: Samuel Jenness [cre, aut],
Steven M. Goodreau [aut],
Martina Morris [aut],
Emily Beylerian [ctb],
Skye Bender-deMoll [ctb],
Kevin Weiss [ctb]
Maintainer: Samuel Jenness <samuel.m.jenness@emory.edu>
Diff between EpiModel versions 1.2.8 dated 2016-12-16 and 1.3.0 dated 2017-03-13
DESCRIPTION | 8 +- MD5 | 59 ++++++++++---------- NAMESPACE | 1 NEWS | 32 +++++++++++ R/EpiModel-package.r | 6 +- R/control.R | 21 ++++--- R/crosscheck.R | 18 +++--- R/dcm.R | 7 ++ R/init.R | 6 +- R/merge.R | 7 +- R/param.R | 6 +- R/plot.R | 42 +++----------- R/print.r | 22 ++----- R/saveout.R | 18 +++++- R/utils.R | 122 +++++++++++++++++++------------------------ build/vignette.rds |binary inst/doc/Intro.html | 6 +- man/EpiModel-package.Rd | 4 - man/control.dcm.Rd | 7 +- man/control.icm.Rd | 2 man/control.net.Rd | 2 man/get_degree.Rd | 12 ++-- man/merge.netsim.Rd | 4 - man/mutate_epi.Rd | 33 +++++++---- man/plot.dcm.Rd | 8 +- man/plot.icm.Rd | 13 ++-- man/plot.netsim.Rd | 22 +++---- tests/testthat/test-dcm.R | 4 - tests/testthat/test-mutate.R |only tests/testthat/test-print.R | 9 +-- tests/testthat/test-utils.R | 28 --------- 31 files changed, 256 insertions(+), 273 deletions(-)
Title: Colour Vision Models
Description: Colour vision models, colour spaces and colour thresholds. Includes Vorobyev & Osorio Receptor Noise Limited models, Chittka colour hexagon, and Endler & Mielke model. Models have been extended to accept any number of photoreceptor types.
Author: Felipe M. Gawryszewski
Maintainer: Felipe Malheiros Gawrysewski <f.gawry@gmail.com>
Diff between colourvision versions 1.0 dated 2017-03-08 and 1.1 dated 2017-03-13
DESCRIPTION | 8 +-- MD5 | 14 +++--- NEWS | 7 +++ R/colourvision_package.R | 105 +++++++++++++++++++++++++++++------------------ build/partial.rdb |binary man/EMmodel.Rd | 11 ++-- man/EMtriangle.Rd | 7 +-- man/colour_space.Rd | 17 ++++--- 8 files changed, 106 insertions(+), 63 deletions(-)
Title: Seismic Reflection and Scattering Coefficients
Description: Calculate and plot scattering matrix coefficients for plane waves at interface.
Author: Jonathan M. Lees <jonathan.lees@unc.edu>
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between zoeppritz versions 1.0-5 dated 2015-04-27 and 1.0-6 dated 2017-03-13
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NAMESPACE | 4 ++++ 3 files changed, 10 insertions(+), 6 deletions(-)
Title: Scrape Lakes Metadata Tables from Wikipedia
Description: Scrape lakes metadata tables from Wikipedia <http://www.wikipedia.org>.
Author: Joseph Stachelek [aut, cre]
Maintainer: Joseph Stachelek <stachel2@msu.edu>
Diff between wikilake versions 0.1 dated 2017-01-07 and 0.2 dated 2017-03-13
DESCRIPTION | 10 ++--- MD5 | 25 ++++++++---- NEWS.md |only R/get.R | 2 + R/utils.R | 26 +++++++++---- README.md | 70 +++++++++++++++++------------------- inst/doc/scrape_michigan_lakes.R | 3 - inst/doc/scrape_michigan_lakes.Rmd | 7 --- inst/doc/scrape_michigan_lakes.html | 4 +- man/lake_wiki.Rd | 2 + tests |only tools |only vignettes/scrape_michigan_lakes.Rmd | 7 --- 13 files changed, 80 insertions(+), 76 deletions(-)
Title: Visualization for Seismic Tomography
Description: Aimed at seismic tomography, the package
plots tomographic images, and allows one to interact and query
three-dimensional tomographic models.
Vertical cross-sectional cuts can be extracted by mouse click.
Geographic information can be added easily.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between RTOMO versions 1.1-3 dated 2015-04-27 and 1.1-5 dated 2017-03-13
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NAMESPACE | 7 +++++++ 3 files changed, 13 insertions(+), 6 deletions(-)
Title: Graphics for Spherical Distributions and Earthquake Focal
Mechanisms
Description: Graphics for statistics on a sphere, as applied to geological fault data, crystallography, earthquake focal mechanisms, radiation patterns, ternary plots and geographical/geological maps. Non-double couple plotting of focal spheres and source type maps are included for statistical analysis of moment tensors.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between RFOC versions 3.3-3 dated 2014-01-06 and 3.4-3 dated 2017-03-13
DESCRIPTION | 8 - MD5 | 66 ++++++++------ NAMESPACE | 7 + R/Beachfoc.R | 2 R/CONVERTSDR.R | 6 - R/PTXY2.R |only R/SourceType.R | 8 - R/StrikeDip.R | 58 ++++++++++-- R/TEACHFOC.R | 12 ++ R/TapePlot.R | 24 ++--- R/flipnodal.R |only R/getCMT.R | 2 R/getUWfocs.R | 6 - R/hudson.plot.R | 1 R/justfocXY.R | 104 +++++++++++++++++------ R/nipXY.R | 50 ++++++++++- R/plotMEC.R | 11 ++ R/plotmanyfoc.R | 229 +++++++++++++++++++++++++++++++++++---------------- R/rotateFoc.R | 16 --- R/ternfoc.point.R | 10 +- R/xsecmanyfoc.R | 233 ++++++++++++++++++++++++++++------------------------ data/egl.RData |only demo/FOCA.R | 2 demo/RFOC.R | 22 ++-- man/KAMCORN.Rd | 2 man/PTXY2.Rd |only man/PlotTernfoc.Rd | 6 - man/RFOC-package.Rd | 2 man/StrikeDip.Rd | 46 ++++++++-- man/TapePlot.Rd | 34 ++++++- man/egl.Rd |only man/flipnodal.Rd |only man/getCMT.Rd | 4 man/justfocXY.Rd | 6 - man/nipXY.Rd | 64 +++++--------- man/plotmanyfoc.Rd | 10 +- man/xsecmanyfoc.Rd | 14 +-- 37 files changed, 686 insertions(+), 379 deletions(-)
Title: Grades Setting and Exam Maker
Description: Programs to determine student grades and create
examinations from Question banks. Programs will create numerous
multiple choice exams, randomly shuffled, for different versions of same question list.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between ProfessR versions 2.3 dated 2014-05-08 and 2.3-5 dated 2017-03-13
ProfessR-2.3-5/ProfessR/DESCRIPTION | 8 +++--- ProfessR-2.3-5/ProfessR/MD5 | 18 ++++++--------- ProfessR-2.3-5/ProfessR/NAMESPACE | 6 +++++ ProfessR-2.3-5/ProfessR/R/EXAMstats.R | 5 ++-- ProfessR-2.3-5/ProfessR/build/vignette.rds |binary ProfessR-2.3-5/ProfessR/inst/doc/ExamMaker.Rnw | 2 - ProfessR-2.3-5/ProfessR/inst/doc/Grader.Rnw | 7 +---- ProfessR-2.3-5/ProfessR/man/E2grades.Rd | 2 - ProfessR-2.3-5/ProfessR/vignettes/Grader.Rnw | 7 +---- ProfessR-2.3/ProfessR/inst/doc/climate_change_abbott.txt |only ProfessR-2.3/ProfessR/inst/doc/tsunami_abbot_web.txt |only 11 files changed, 26 insertions(+), 29 deletions(-)
Title: Geophysics, Continuum Mechanics, Mogi Models, Gravity
Description: Codes for analyzing various problems of Geophysics, Continuum Mechanics and Mogi Models.
Author: Jonathan M. Lees
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between geophys versions 1.3-8 dated 2015-04-27 and 1.3-9 dated 2017-03-13
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NAMESPACE | 7 +++++++ man/okada85.Rd | 4 ++++ 4 files changed, 18 insertions(+), 7 deletions(-)
Title: Various R Functions from the Kostas Lab
Description: A collection of R functions of common use in
the Kostas Lab for microbial ecology.
Author: Luis M. Rodriguez-R [aut, cre]
Maintainer: Luis M. Rodriguez-R <lmrodriguezr@gmail.com>
Diff between enveomics.R versions 1.1.1 dated 2016-08-16 and 1.1.4 dated 2017-03-13
DESCRIPTION | 6 +++--- MD5 | 14 ++++++++------ NAMESPACE | 2 +- R/df2dist.R | 2 +- R/recplot2.R | 4 +++- R/utils.R |only README.md | 1 + man/enve.RecPlot2-class.Rd | 4 +++- man/enve.col.alpha.Rd |only 9 files changed, 20 insertions(+), 13 deletions(-)
Title: Everyone's Statistical Software
Description: A framework that brings together an abundance of common
statistical models found across packages into a unified interface, and
provides a common architecture for estimation and interpretation, as well
as bridging functions to absorb increasingly more models into the
collective library. Zelig allows each individual package, for each
statistical model, to be accessed by a common uniformly structured call and
set of arguments. Moreover, Zelig automates all the surrounding building
blocks of a statistical work-flow--procedures and algorithms that may be
essential to one user's application but which the original package
developer did not use in their own research and might not themselves
support. These include bootstrapping, jackknifing, and re-weighting of data.
In particular, Zelig automatically generates predicted and simulated
quantities of interest (such as relative risk ratios, average treatment
effects, first differences and predicted and expected values) to interpret
and visualize complex models.
Author: Christine Choirat [aut],
Christopher Gandrud [aut, cre],
James Honaker [aut],
Kosuke Imai [aut],
Gary King [aut],
Olivia Lau [aut],
IQSS Harvard University [cph]
Maintainer: Christopher Gandrud <zelig.zee@gmail.com>
Diff between Zelig versions 5.0-16 dated 2017-02-28 and 5.0-17 dated 2017-03-13
DESCRIPTION | 8 MD5 | 55 +++-- NAMESPACE | 6 NEWS.md | 46 ++++ R/interface.R | 379 ++++++++++++++++++++++++++++---------- R/model-mlogit-bayes.R | 1 R/model-zelig.R | 231 +++++++++-------------- R/utils.R | 166 ++++++++++++++-- build/vignette.rds |binary man/Mode.Rd | 2 man/Zelig-bayes-class.Rd | 2 man/Zelig-class.Rd | 4 man/coefficients-Zelig-method.Rd |only man/combine_coef_se.Rd |only man/expand_grid_setrange.Rd | 4 man/extract_setrange.Rd | 4 man/extract_setx.Rd | 4 man/factor_coef_combine.Rd |only man/qi_slimmer.Rd | 4 man/vcov-Zelig-method.Rd | 4 man/zelig_qi_to_df.Rd | 6 man/zelig_setx_to_df.Rd |only tests/testthat.R | 2 tests/testthat/test-exp.R | 3 tests/testthat/test-interface.R | 49 ++++ tests/testthat/test-ls.R | 39 ++- tests/testthat/test-normal.R | 3 tests/testthat/test-normalbayes.R |only tests/testthat/test-qislimmer.R | 21 +- tests/testthat/test-utils.R | 42 +++- tests/testthat/test-zelig.R | 17 + 31 files changed, 769 insertions(+), 333 deletions(-)
Title: High-Speed Processing of VCF, FASTA and Alignment Data
Description: Provides very fast access to whole genome, population scale variation data
from VCF files and sequence data from FASTA-formatted files.
It also reads in alignments from FASTA, Phylip, MAF and other file formats.
Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data
from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.
Author: Ulrich Wittelsbuerger [aut, cre], Heng Li [ctb], Bob Handsaker [ctb]
Maintainer: Ulrich Wittelsbuerger <ulrich.wittelsbuerger@uni-duesseldorf.de>
Diff between WhopGenome versions 0.9.6 dated 2017-03-02 and 0.9.7 dated 2017-03-13
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/w_common.h | 7 ++++++- src/w_rsupport.h | 1 + 4 files changed, 14 insertions(+), 8 deletions(-)
Title: R Markdown Format for 'reveal.js' Presentations
Description: R Markdown format for 'reveal.js' presentations, a framework
for easily creating beautiful presentations using HTML.
Author: Hakim El Hattab [aut, cph] (reveal.js-3.2.0,
https://github.com/hakimel/reveal.js),
Asvin Goel [ctb, cph] (chalkboard plugin),
Greg Denehy [ctb, cph] (menu plugin),
JJ Allaire [aut, cre],
RStudio [cph]
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between revealjs versions 0.8 dated 2016-12-14 and 0.9 dated 2017-03-13
revealjs-0.8/revealjs/inst/reveal.js-3.3.0 |only revealjs-0.9/revealjs/DESCRIPTION | 13 revealjs-0.9/revealjs/MD5 | 240 ++--- revealjs-0.9/revealjs/R/revealjs_presentation.R | 57 - revealjs-0.9/revealjs/inst/NEWS | 10 revealjs-0.9/revealjs/inst/reveal.js-3.3.0.1 |only revealjs-0.9/revealjs/inst/rmarkdown/templates/revealjs_presentation/resources/default.html | 437 +++++++++- revealjs-0.9/revealjs/man/revealjs_presentation.Rd | 16 8 files changed, 604 insertions(+), 169 deletions(-)
Title: Parse Eye-Tracking Data into Fixations
Description: Eye-tracking data must be transformed into fixations and saccades before it can be analyzed. This package provides a non-parametric speed-based approach to do this on a trial basis. The method is especially useful when there are large differences in data quality, as the thresholds are adjusted accordingly. The same pre-processing procedure can be applied to all participants, while accounting for individual differences in data quality.
Author: Daan van Renswoude & Ingmar Visser
Maintainer: Daan van Renswoude <D.R.vanRenswoude@uva.nl>
Diff between gazepath versions 1.1 dated 2016-06-30 and 1.2 dated 2017-03-13
gazepath-1.1/gazepath/data/eye_data.RData |only gazepath-1.1/gazepath/man/eye_data.Rd |only gazepath-1.2/gazepath/DESCRIPTION | 12 ++++++------ gazepath-1.2/gazepath/MD5 | 20 ++++++++++---------- gazepath-1.2/gazepath/R/GazePath.R | 4 ++-- gazepath-1.2/gazepath/R/simplify.R | 14 +++++++++----- gazepath-1.2/gazepath/data/eye_dat.RData |only gazepath-1.2/gazepath/data/screen.RData |binary gazepath-1.2/gazepath/inst/shiny/gpApp/server.R | 10 +++++----- gazepath-1.2/gazepath/inst/shiny/gpApp/ui.R | 4 ++-- gazepath-1.2/gazepath/man/GazePath.Rd | 22 +++++++++++----------- gazepath-1.2/gazepath/man/eye_dat.Rd |only gazepath-1.2/gazepath/man/gazepath-package.Rd | 4 ++-- 13 files changed, 47 insertions(+), 43 deletions(-)
Title: R Markdown Format for Flexible Dashboards
Description: Format for converting an R Markdown document to a grid oriented
dashboard. The dashboard flexibly adapts the size of it's components to the
containing web page.
Author: JJ Allaire [aut, cre],
RStudio [cph],
Keen IO [ctb, cph] (Dashboard CSS),
Abdullah Almsaeed [ctb, cph] (Dashboard CSS),
Jonas Mosbech [ctb, cph] (StickyTableHeaders),
Noel Bossart [ctb, cph] (Featherlight),
Lea Verou [ctb, cph] (Prism),
Dmitry Baranovskiy [ctb, cph] (Raphael.js),
Sencha Labs [ctb, cph] (Raphael.js),
Bojan Djuricic [ctb, cph] (JustGage),
Tomas Sardyha [ctb, cph] (Sly),
Bryan Lewis [ctb, cph] (Examples),
Carson Sievert [ctb, cph] (Examples),
Joshua Kunst [ctb, cph] (Examples),
Ryan Hafen [ctb, cph] (Examples),
Bob Rudis [ctb, cph] (Examples),
Joe Cheng [ctb] (Examples)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between flexdashboard versions 0.4 dated 2017-01-31 and 0.5 dated 2017-03-13
flexdashboard-0.4/flexdashboard/README.md |only flexdashboard-0.4/flexdashboard/inst/examples/crandash/README.md |only flexdashboard-0.5/flexdashboard/DESCRIPTION | 8 ++-- flexdashboard-0.5/flexdashboard/MD5 | 20 ++++------ flexdashboard-0.5/flexdashboard/R/flex_dashboard.R | 7 +++ flexdashboard-0.5/flexdashboard/inst/NEWS | 9 ++++ flexdashboard-0.5/flexdashboard/man/flex_dashboard.Rd | 1 flexdashboard-0.5/flexdashboard/man/flexdashboard.Rd | 1 flexdashboard-0.5/flexdashboard/man/gauge-shiny.Rd | 1 flexdashboard-0.5/flexdashboard/man/gauge.Rd | 1 flexdashboard-0.5/flexdashboard/man/valueBox-shiny.Rd | 3 - flexdashboard-0.5/flexdashboard/man/valueBox.Rd | 1 12 files changed, 29 insertions(+), 23 deletions(-)
Title: Ensemble Forecast Verification for Large Data Sets
Description: Set of tools to simplify application of atomic forecast
verification metrics for (comparative) verification of ensemble forecasts
to large data sets. The forecast metrics are imported from the
'SpecsVerification' package, and additional forecast metrics are provided
with this package. Alternatively, new user-defined forecast scores can be
implemented using the example scores provided and applied using the
functionality of this package.
Author: MeteoSwiss [aut, cph],
Jonas Bhend [cre],
Jacopo Ripoldi [ctb],
Claudia Mignani [ctb],
Irina Mahlstein [ctb],
Rebecca Hiller [ctb],
Christoph Spirig [ctb],
Mark Liniger [ctb],
Andreas Weigel [ctb],
Joaqu'in Bedia Jimenez [ctb],
Matteo De Felice [ctb],
Stefan Siegert [ctb]
Maintainer: Jonas Bhend <jonas.bhend@meteoswiss.ch>
Diff between easyVerification versions 0.4.0 dated 2017-01-23 and 0.4.1 dated 2017-03-13
DESCRIPTION | 16 +++++++++------- MD5 | 21 +++++++++++---------- NAMESPACE | 2 +- NEWS | 9 +++++++++ R/convert2prob.R | 8 +++++--- R/count2prob.R | 9 ++++++--- R/easyVerification.R | 2 +- R/veriApply.R | 11 +++++++++++ R/veriUnwrap.R | 22 +++++++++++----------- build/vignette.rds |binary src/native_routine_registration.c |only tests/testthat/test_Roc.R | 2 +- 12 files changed, 65 insertions(+), 37 deletions(-)
More information about easyVerification at CRAN
Permanent link
Title: Visualizing Association Rules and Frequent Itemsets
Description: Extends package arules with various visualization techniques for association rules and itemsets. The package also includes several interactive visualizations for rule exploration.
Author: Michael Hahsler [aut, cre, cph],
Sudheer Chelluboina [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arulesViz versions 1.2-0 dated 2016-10-03 and 1.2-1 dated 2017-03-13
DESCRIPTION | 18 +- MD5 | 36 ++--- NAMESPACE | 2 NEWS.md | 45 ++++--- R/AAAhelpers.R | 10 - R/graph.R | 4 R/groupedmatrix.R | 101 +++++++++++----- R/inspectDT.R | 9 - R/plotly.R | 90 +++++++++----- R/scatterplot.R | 31 +++- README.md | 72 ++++++++--- inst/doc/arulesViz.R | 2 inst/doc/arulesViz.Rnw | 300 ++++++++++++++++++++++++------------------------ inst/doc/arulesViz.pdf |binary man/inspectDT.Rd | 5 man/plot.Rd | 34 +++-- man/plotly_arules.Rd | 27 ++-- man/save.Rd | 4 vignettes/arulesViz.Rnw | 300 ++++++++++++++++++++++++------------------------ 19 files changed, 629 insertions(+), 461 deletions(-)
Title: Image Processing Library Based on 'CImg'
Description: Fast image processing for images in up to 4 dimensions (two spatial
dimensions, one time/depth dimension, one colour dimension). Provides most
traditional image processing tools (filtering, morphology, transformations,
etc.) as well as various functions for easily analysing image data using R. The
package wraps CImg, <http://cimg.eu>, a simple, modern C++ library for image
processing.
Author: Simon Barthelme [aut, cre]
Maintainer: Simon Barthelme <simon.barthelme@gipsa-lab.fr>
Diff between imager versions 0.40 dated 2017-03-12 and 0.40.1 dated 2017-03-13
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS.md | 4 ++++ R/pixset.R | 2 +- build/vignette.rds |binary inst/doc/gettingstarted.html | 19 ++++++++++++------- inst/doc/pixsets.Rmd | 2 +- inst/doc/pixsets.html | 17 +++++++++++------ inst/include/CImg.h | 22 +++++++++++----------- src/RcppExports.cpp | 2 +- src/drawing.cpp | 14 +++++++------- vignettes/pixsets.Rmd | 2 +- 12 files changed, 64 insertions(+), 50 deletions(-)
Title: Miscellaneous Tools for Chinese Text Mining and More
Description: Efforts are made to make Chinese text mining easier, faster, and robust to errors.
Document term matrix can be generated by only one line of code; detecting encoding,
segmenting and removing stop words are done automatically.
Some convenient tools are also supplied.
Author: Jiang Wu [aut, cre] (from Tsinghua University)
Maintainer: Jiang Wu <textidea@sina.com>
Diff between chinese.misc versions 0.1.2 dated 2017-03-05 and 0.1.3 dated 2017-03-13
chinese.misc-0.1.2/chinese.misc/R/mUltIEncOdE.R |only chinese.misc-0.1.3/chinese.misc/DESCRIPTION | 10 - chinese.misc-0.1.3/chinese.misc/MD5 | 62 +++--- chinese.misc-0.1.3/chinese.misc/NAMESPACE | 6 chinese.misc-0.1.3/chinese.misc/NEWS | 12 + chinese.misc-0.1.3/chinese.misc/R/AftEr_myfUn.R | 1 chinese.misc-0.1.3/chinese.misc/R/UsEstrIngI.R | 51 +++-- chinese.misc-0.1.3/chinese.misc/R/aboutlocale.R |only chinese.misc-0.1.3/chinese.misc/R/chEck_cOntrOl.R | 1 chinese.misc-0.1.3/chinese.misc/R/corp_or_dtm.R | 22 +- chinese.misc-0.1.3/chinese.misc/R/csv2txt.R | 2 chinese.misc-0.1.3/chinese.misc/R/dir_or_file.R | 7 chinese.misc-0.1.3/chinese.misc/R/dir_or_file_self.R |only chinese.misc-0.1.3/chinese.misc/R/find_jiebar_stop.R |only chinese.misc-0.1.3/chinese.misc/R/m2doc.R | 1 chinese.misc-0.1.3/chinese.misc/R/make_stoplist.R | 15 + chinese.misc-0.1.3/chinese.misc/R/make_valid_folder.R | 3 chinese.misc-0.1.3/chinese.misc/R/match_pattern.R | 2 chinese.misc-0.1.3/chinese.misc/R/output_dtm.R | 2 chinese.misc-0.1.3/chinese.misc/R/scancn.R | 7 chinese.misc-0.1.3/chinese.misc/R/second_dtm.R | 163 ++++++++---------- chinese.misc-0.1.3/chinese.misc/R/seg_file.R | 27 +- chinese.misc-0.1.3/chinese.misc/R/slim_text.R | 12 - chinese.misc-0.1.3/chinese.misc/R/sort_tf.R | 21 +- chinese.misc-0.1.3/chinese.misc/R/tf2doc.R | 4 chinese.misc-0.1.3/chinese.misc/R/topic_trend.R |only chinese.misc-0.1.3/chinese.misc/R/tryscAn.R | 51 ++--- chinese.misc-0.1.3/chinese.misc/R/txt2csv.R | 8 chinese.misc-0.1.3/chinese.misc/R/word_cor.R |only chinese.misc-0.1.3/chinese.misc/R/zzz.r | 6 chinese.misc-0.1.3/chinese.misc/man/make_stoplist.Rd | 4 chinese.misc-0.1.3/chinese.misc/man/seg_file.Rd | 5 chinese.misc-0.1.3/chinese.misc/man/slim_text.Rd | 3 chinese.misc-0.1.3/chinese.misc/man/sort_tf.Rd | 8 chinese.misc-0.1.3/chinese.misc/man/topic_trend.Rd |only chinese.misc-0.1.3/chinese.misc/man/word_cor.Rd |only 36 files changed, 284 insertions(+), 232 deletions(-)
Title: Computed ABC Analysis
Description: For a given data set, the package provides a novel method of computing precise limits to acquire subsets which are easily interpreted. Closely related to the Lorenz curve, the ABC curve visualizes the data by graphically representing the cumulative distribution function. Based on an ABC analysis the algorithm calculates, with the help of the ABC curve, the optimal limits by exploiting the mathematical properties pertaining to distribution of analyzed items. The data containing positive values is divided into three disjoint subsets A, B and C, with subset A comprising very profitable values, i.e. largest data values ("the important few"), subset B comprising values where the yield equals to the effort required to obtain it, and the subset C comprising of non-profitable values, i.e., the smallest data sets ("the trivial many"). Package is based on "Computed ABC Analysis for rational Selection of most informative Variables in multivariate Data", PLoS One. Ultsch. A., Lotsch J. (2015) <DOI:10.1371/journal.pone.0129767>.
Author: Michael Thrun, Jorn Lotsch, Alfred Ultsch
Maintainer: Florian Lerch <lerch@mathematik.uni-marburg.de>
Diff between ABCanalysis versions 1.1.2 dated 2016-08-23 and 1.2.1 dated 2017-03-13
DESCRIPTION | 11 +++-- MD5 | 20 ++++++---- NAMESPACE | 1 R/ABCanalysis.R | 90 +++++++++++++++++++++++++++-------------------- R/ABCanalysis4curve.R |only R/ABCanalysisPlot.R | 35 +++++++++--------- R/ABCcurve.R | 26 +++++++------ R/ABCplot.R | 16 +++++++- R/Gini4ABC.R |only R/GiniIndex.R |only man/ABCanalysis4curve.Rd |only man/ABCcurve.Rd | 20 +++++++++- man/Gini4ABC.Rd |only man/GiniIndex.Rd |only 14 files changed, 138 insertions(+), 81 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-08 2.1-11
Title: Parametric Linkage and Other Pedigree Analysis in R
Description: A suite of tools for analysing pedigrees with marker data, including parametric linkage analysis, forensic computations, relatedness analysis and marker simulations. The core of the package is an implementation of the Elston-Stewart algorithm for pedigree likelihoods, extended to allow mutations as well as complex inbreeding. Features for linkage analysis include singlepoint LOD scores, power analysis, and multipoint analysis (the latter through a wrapper to the MERLIN software). Forensic applications include exclusion probabilities, genotype distributions and conditional simulations. Data from the Familias software can be imported and analysed in paramlink. Finally, paramlink offers many utility functions for creating, manipulating and plotting pedigrees with or without marker data (the actual plotting is done by the kinship2 package).
Author: Magnus Dehli Vigeland
Maintainer: Magnus Dehli Vigeland <magnusdv@studmed.uio.no>
Diff between paramlink versions 0.9-9 dated 2016-10-16 and 1.1-0 dated 2017-03-13
DESCRIPTION | 18 - MD5 | 99 ++++--- NAMESPACE | 5 NEWS | 69 +++++ R/SNPsim.R | 209 ++++++++------- R/as.data.frame.linkdat.R | 16 - R/as.matrix.linkdat.R | 72 ++--- R/createPedigree.R | 102 +++---- R/examineKinships.R | 84 ++++-- R/exclusionPower.R | 117 ++++---- R/familias2linkdat.R |only R/likelihood.R | 266 ++++++++++++------- R/likelihoodSNP.R | 194 +++++++------- R/likelihood_LINKAGE.R | 576 +++++++++++++++++++++---------------------- R/linkage.power.R | 183 ++++++------- R/linkageSim.R | 20 - R/linkdat.R | 151 +++++------ R/lod.R | 179 ++++++------- R/loops.R |only R/markerSim.R | 424 +++++++++++++++++++++---------- R/markers.R | 180 +++++++++---- R/merlin.R | 92 +++--- R/modify.R | 6 R/oneMarkerDistribution.R | 26 + R/plot.linkdat.R | 125 +++++---- R/plotPedList.R |only R/print.linkdat.R | 96 +++---- R/randomPed.R | 90 +++--- R/relationLR.R | 7 R/setMap.R | 100 +++---- R/setModel.R | 140 +++++----- R/subset.linkdat.R | 14 - R/twoMarkerDistribution.R | 4 R/utils.R | 157 ++++------- man/Familias2linkdat.Rd |only man/IBDtriangle.Rd |only man/examineKinships.Rd | 16 - man/exclusionPower.Rd | 36 +- man/inbreeding.Rd | 46 ++- man/is.linkdat.Rd |only man/likelihood.Rd | 19 + man/linkageSim.Rd | 3 man/linkdat.Rd | 4 man/linkdat.utils.Rd | 26 - man/lod.Rd | 10 man/loops.Rd |only man/markerSim.Rd | 24 - man/markers.Rd | 51 ++- man/merlin.Rd | 2 man/oneMarkerDistribution.Rd | 8 man/paramlink-package.Rd | 51 --- man/plot.linkdat.Rd | 38 +- man/plotPedList.Rd |only man/setPlotLabels.Rd |only man/simpleSim.Rd | 6 55 files changed, 2309 insertions(+), 1852 deletions(-)
Title: Modelling and Inferencing Attachment Mechanisms of Temporal
Complex Networks
Description: A framework for modelling and inferencing attachment mechanisms of temporal complex networks is implemented in this package. For estimating the preferential attachment (PA) function in isolation, we implement Jeong's method, the corrected Newman's method and the PAFit method. For jointly estimating the PA function and node fitnesses, we implement the PAFit method. The package also provides flexible methods to generate a wide range of temporal networks based on PA and fitness.
Author: Thong Pham, Paul Sheridan, Hidetoshi Shimodaira
Maintainer: Thong Pham <thongpham@thongpham.net>
Diff between PAFit versions 0.9.8.2 dated 2017-03-12 and 0.9.8.3 dated 2017-03-13
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/JointEstimate.R | 35 ++++++++++++++++++++++++++--------- R/perform_CV_core.R | 2 +- man/JointEstimate.rd | 8 ++++++-- src/Cpp_code.cpp | 12 ++++++------ tests/loop_joint_estimate.R | 15 +++++++++++---- 7 files changed, 59 insertions(+), 31 deletions(-)
Title: Gaussian Mixture Modelling for Model-Based Clustering,
Classification, and Density Estimation
Description: Gaussian finite mixture models fitted via EM algorithm for model-based clustering, classification, and density estimation, including Bayesian regularization, dimension reduction for visualisation, and resampling-based inference.
Author: Chris Fraley [aut],
Adrian E. Raftery [aut],
Luca Scrucca [aut, cre],
Thomas Brendan Murphy [ctb],
Michael Fop [ctb]
Maintainer: Luca Scrucca <luca.scrucca@unipg.it>
Diff between mclust versions 5.2.2 dated 2017-01-22 and 5.2.3 dated 2017-03-13
DESCRIPTION | 8 +- MD5 | 19 ++-- NAMESPACE | 2 R/mclustaddson.R | 91 +++++++++-------------- R/util.R | 7 + build/vignette.rds |binary inst/NEWS | 4 + inst/doc/mclust.html | 194 ++++++++++++++++++++++++++++++++++++--------------- src/init.c |only src/mclust.f | 2 src/mclustaddson.f | 4 - 11 files changed, 201 insertions(+), 130 deletions(-)
Title: The 'jamovi' Analyses
Description: 'jamovi' is a rich graphical statistics program providing many
common statistical tests such as t-tests, ANOVAs, correlation matrices,
proportion tests, contingency tables, etc (see <https://www.jamovi.org> for
more information). This package makes all of the basic 'jamovi' analyses
available to the R user.
Author: Jonathon Love, Damian Dropmann, Ravi Selker
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmv versions 0.7.0.3 dated 2017-02-21 and 0.7.0.6 dated 2017-03-13
DESCRIPTION | 11 +++++----- MD5 | 50 +++++++++++++++++++++++++++---------------------- NAMESPACE | 2 - R/ancova.h.R | 5 ++-- R/anova.h.R | 10 +++++---- R/anovanp.h.R | 5 ++-- R/anovarm.h.R | 5 ++-- R/anovarmnp.h.R | 5 ++-- R/conttables.h.R | 5 ++-- R/conttablespaired.h.R | 5 ++-- R/corrmatrix.h.R | 5 ++-- R/descriptives.b.R | 14 +++++-------- R/descriptives.h.R | 5 ++-- R/linreg.h.R | 5 ++-- R/loglinear.h.R | 5 ++-- R/mancova.h.R | 5 ++-- R/proptest2.h.R | 5 ++-- R/proptestn.h.R | 5 ++-- R/reliability.h.R | 5 ++-- R/ttestis.h.R | 5 ++-- R/ttestones.h.R | 5 ++-- R/ttestps.h.R | 5 ++-- man/anova.Rd | 10 ++++----- tests |only 24 files changed, 102 insertions(+), 80 deletions(-)
Title: Discrete Time Survival Analysis
Description: Provides data transformations, estimation utilities,
predictive evaluation measures and simulation functions for discrete time
survival analysis.
Author: Thomas Welchowski <welchow@imbie.meb.uni-bonn.de> and Matthias Schmid <matthias.schmid@imbie.uni-bonn.de>
Maintainer: Thomas Welchowski <welchow@imbie.meb.uni-bonn.de>
Diff between discSurv versions 1.1.6 dated 2017-03-12 and 1.1.7 dated 2017-03-13
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/DiscSurvEstimation.R | 10 +++++++--- man/discSurv-package.Rd | 4 ++-- tests/UnitTestsDiscSurvEstimation.R | 6 ++++++ 5 files changed, 23 insertions(+), 13 deletions(-)
Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and
unified Future API for sequential and parallel processing of R
expression via futures. The simplest way to evaluate an expression
in parallel is to use `x %<-% { expression }` with `plan(multiprocess)`.
This package implements sequential, multicore, multisession, and
cluster futures. With these, R expressions can be evaluated on the
local machine, on in parallel a set of local machines, or distributed
on a mix of local and remote machines.
Extensions to this package implements additional backends for
processing futures via compute cluster schedulers etc.
Because of its unified API, there is no need to modify code in order
switch from sequential on the local machine to, say, distributed
processing on a remote compute cluster.
Another strength of this package is that global variables and functions
are automatically identified and exported as needed, making it
straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.3.0 dated 2017-02-19 and 1.4.0 dated 2017-03-13
DESCRIPTION | 8 MD5 | 90 +++++---- NAMESPACE | 11 + NEWS | 74 +++++++ R/ClusterFuture-class.R | 122 +++++++------ R/ConstantFuture-class.R | 5 R/Future-class.R | 125 +++++++++---- R/FutureGlobals-class.R |only R/MultiprocessFuture-class.R | 5 R/MultisessionFuture-class.R | 4 R/UniprocessFuture-class.R | 6 R/availableCores.R | 3 R/cluster.R | 7 R/future.R | 17 + R/futureAssign_OP.R | 19 -- R/future_lapply.R | 325 +++++++++++++++++++++-------------- R/globals.R | 95 ++++++---- R/makeClusterPSOCK.R | 13 + R/multicore.R | 11 - R/multisession.R | 7 R/nbrOfWorkers.R | 8 R/resolve.R | 32 ++- R/tweak.R | 12 - R/utils.R | 135 ++++++++++++++ build/vignette.rds |binary inst/doc/future-1-overview.html | 78 ++++---- man/ClusterFuture-class.Rd | 11 - man/ConstantFuture-class.Rd | 11 - man/Future-class.Rd | 17 + man/FutureGlobals.Rd |only man/MultiprocessFuture-class.Rd | 5 man/UniprocessFuture-class.Rd | 8 man/future.Rd | 16 + man/future_lapply.Rd | 58 ++++-- man/makeClusterPSOCK.Rd | 19 +- man/private_length.Rd |only tests/availableCores.R | 6 tests/deprecated.R | 50 ++--- tests/futureAssign_OP.R | 6 tests/future_lapply,RNG.R |only tests/future_lapply,tricky_globals.R |only tests/future_lapply.R | 99 ---------- tests/globals,tricky_recursive.R |only tests/globalsOf,tweaks.R | 2 tests/incl/start,load-only.R | 1 tests/nbrOfWorkers.R | 10 + tests/objectSize.R | 14 + tests/resolve.R | 13 + tests/uuid.R | 32 +++ 49 files changed, 998 insertions(+), 592 deletions(-)
Title: Partial Dependence Plots
Description: A general framework for constructing partial dependence (i.e.,
marginal effect) plots from various types machine learning models in R.
Author: Brandon Greenwell [aut, cre]
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>
Diff between pdp versions 0.4.0 dated 2017-01-07 and 0.5.2 dated 2017-03-13
DESCRIPTION | 20 +- MD5 | 55 +++--- NAMESPACE | 19 ++ NEWS.md | 19 ++ R/autoplot.R |only R/partial.R | 356 ++++++++++++++++++++++++++---------------- R/pdClassification.R | 248 +++++++++++++++++++++++------ R/pdGBM.R |only R/pdManual.R |only R/pdRegression.R | 64 +++---- R/pdp.R | 6 R/plotPartial.R | 31 +-- R/predGrid.R | 104 ++++++++++-- R/superType.R | 21 ++ R/utils.R | 11 - README.md | 171 ++++++++------------ man/autoplot.Rd |only man/boston.Rd | 1 man/grid.arrange.Rd | 1 man/partial.Rd | 119 +++++++++----- man/pdp.Rd | 7 man/pima.Rd | 1 man/pipe.Rd | 1 man/plotPartial.Rd | 16 - man/topPredictors.Rd | 1 man/trellis.last.object.Rd | 1 src |only tests/testthat/test-partial.R | 101 +++++++++-- tests/testthat/test-utils.R | 41 ++-- tools |only 30 files changed, 941 insertions(+), 474 deletions(-)
Title: Flexible Tools for Multiple Imputation
Description: Provides a set of tools that can be used across 'data.frame' and
'imputationList' objects.
Author: James Conigrave
Maintainer: James Conigrave <james.conigrave@gmail.com>
Diff between Conigrave versions 0.1.0 dated 2016-06-16 and 0.1.1 dated 2017-03-13
DESCRIPTION | 13 +++--- MD5 | 12 +++--- NAMESPACE | 4 +- R/Interaction.plot.R | 6 +-- R/correlatrix.R | 99 +++++++++++++++++++++++++++++++++++++++++---------- man/correlatrix.Rd | 15 ++++--- man/int.plot.Rd | 3 - 7 files changed, 107 insertions(+), 45 deletions(-)