Title: Forecasting Using Smoothing Functions
Description: The set of smoothing functions used for time series analysis and
in forecasting. Currently the package includes exponential smoothing models and
SARIMA in state-space form + several simulation functions.
Author: Ivan Svetunkov [aut, cre] (Research Associate at Lancaster Centre for
Forecasting, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between smooth versions 1.7.0 dated 2017-02-24 and 1.9.0 dated 2017-03-16
DESCRIPTION | 8 - MD5 | 112 ++++++++++--------- NAMESPACE | 2 NEWS | 37 ++++++ R/autoces.R | 178 ++++++++++--------------------- R/autossarima.R | 111 +------------------ R/ces.R | 140 ++++-------------------- R/error-measures.R | 7 - R/es.R | 227 ++++++++++++++++++---------------------- R/ges.R | 131 ++++------------------- R/iss.R | 18 +-- R/methods.R | 80 ++++++++++++-- R/simces.R | 58 ++++------ R/simes.R | 52 +++------ R/simges.R |only R/simssarima.R | 82 +++++++------- R/sma.R | 125 ++++++++-------------- R/smooth-package.R | 23 +--- R/ssarima.R | 232 ++++++++++++++--------------------------- R/ssfunctions.R | 50 +++++++- R/stepwise.R | 31 ++++- R/xregExpander.R |only README.md | 6 - build/vignette.rds |binary inst/doc/ces.html | 54 ++++----- inst/doc/es.R | 3 inst/doc/es.Rmd | 5 inst/doc/es.html | 115 ++++++++++++-------- inst/doc/ges.html | 20 +-- inst/doc/simulate.R | 11 + inst/doc/simulate.Rmd | 18 +++ inst/doc/simulate.html | 82 ++++++++------ inst/doc/sma.html | 12 +- inst/doc/smooth.html | 4 inst/doc/ssarima.html | 52 ++++----- man/auto.ces.Rd | 66 ++++------- man/auto.ssarima.Rd | 47 ++++---- man/ces.Rd | 46 +++----- man/error-measures.Rd | 7 - man/es.Rd | 65 +++++++---- man/ges.Rd | 44 ++++--- man/iss.Rd | 14 +- man/sim.ces.Rd | 51 +++++---- man/sim.es.Rd | 51 ++++----- man/sim.ges.Rd |only man/sim.ssarima.Rd | 53 ++++++--- man/sma.Rd | 103 ++++++++++-------- man/smooth.Rd | 49 +++++++- man/ssarima.Rd | 156 ++++++++++++++------------- man/stepwise.Rd | 10 + man/xregExpander.Rd |only src/ssgeneralfun.cpp | 7 - tests/testthat/test_ces.R | 4 tests/testthat/test_es.R | 6 - tests/testthat/test_ges.R | 2 tests/testthat/test_simulate.R | 10 + tests/testthat/test_ssarima.R | 4 vignettes/es.Rmd | 5 vignettes/simulate.Rmd | 18 +++ 59 files changed, 1405 insertions(+), 1499 deletions(-)
Title: Fast Simulation of Normal/Exponential Random Variables and
Stochastic Differential Equations
Description: Fast simulation of some random variables than the usual native functions, including rnorm() and rexp(), using Ziggurat method, reference: MARSAGLIA, George, TSANG, Wai Wan, and al. (2000) <doi:10.18637/jss.v005.i08>, and fast simulation of stochastic differential equations.
Author: Nicolas Baradel
Maintainer: Nicolas Baradel - PGM Solutions <nicolas.baradel@pgm-solutions.com>
Diff between rpgm versions 0.1.3 dated 2017-02-28 and 1.0.0 dated 2017-03-16
DESCRIPTION | 14 +- MD5 | 60 ++++++-- NAMESPACE | 1 R/bound.R |only R/jarquebera.R | 2 R/kurtosis.R | 2 R/rbernou.R |only R/rbrownian.R |only R/rcantor.R |only R/reuleur.R |only R/rgpd.R |only R/rmilstein.R |only R/rowMaxs.R |only R/rpgm.rexp.R |only R/rpgm.rgeom.R |only R/rpgm.rlnorm.R |only R/rpgm.rnorm.R | 2 R/rpgm.rt.R |only R/rvasicek.R |only R/skewness.R | 2 man/bound.Rd |only man/colMaxs.Rd |only man/jarquebera.Rd | 3 man/kurtosis.Rd | 3 man/rbernou.Rd |only man/rbrownian.Rd |only man/rcantor.Rd |only man/reuler.Rd |only man/rgpd.Rd |only man/rmilstein.Rd |only man/rpgm.rexp.Rd |only man/rpgm.rgeom.Rd |only man/rpgm.rlnorm.Rd |only man/rpgm.rnorm.Rd | 3 man/rpgm.rt.Rd |only man/rvasicek.Rd |only man/skewness.Rd | 3 src/bound.c |only src/rbernou_rpgm.c |only src/rbrownian.c |only src/rcantor_rpgm.c |only src/rexp_rpgm.c |only src/rexp_rpgm.h |only src/rgpd.c |only src/rnorm_rpgm.c | 366 ++++++++++++++++++++++++++++++++++++++++++++++++++--- src/rnorm_rpgm.h |only src/rowMaxs.c |only src/rpgm_init.c | 52 ++++++- src/vasicek.c |only 49 files changed, 462 insertions(+), 51 deletions(-)
Title: Microeconomic Analysis and Modelling
Description: Various tools for microeconomic analysis and microeconomic modelling,
e.g. estimating quadratic, Cobb-Douglas and Translog functions,
calculating partial derivatives and elasticities of these functions,
and calculating Hessian matrices, checking curvature
and preparing restrictions for imposing monotonicity of Translog functions.
Author: Arne Henningsen
Maintainer: Arne Henningsen <arne.henningsen@gmail.com>
Diff between micEcon versions 0.6-12 dated 2014-04-22 and 0.6-14 dated 2017-03-16
micEcon-0.6-12/micEcon/R/indices.R |only micEcon-0.6-12/micEcon/R/print.summary.translogRayEst.R |only micEcon-0.6-12/micEcon/R/print.translogRayEst.R |only micEcon-0.6-12/micEcon/R/summary.translogRayEst.R |only micEcon-0.6-12/micEcon/R/translogRayDeriv.R |only micEcon-0.6-12/micEcon/R/translogRayEst.R |only micEcon-0.6-12/micEcon/man/priceIndex.Rd |only micEcon-0.6-12/micEcon/man/quantityIndex.Rd |only micEcon-0.6-12/micEcon/man/summary.translogRayEst.Rd |only micEcon-0.6-12/micEcon/man/translogRayDeriv.Rd |only micEcon-0.6-12/micEcon/man/translogRayEst.Rd |only micEcon-0.6-12/micEcon/tests/indices.R |only micEcon-0.6-12/micEcon/tests/indices.Rout.save |only micEcon-0.6-12/micEcon/tests/translogRay.R |only micEcon-0.6-12/micEcon/tests/translogRay.Rout.save |only micEcon-0.6-14/micEcon/DESCRIPTION | 18 micEcon-0.6-14/micEcon/MD5 | 48 micEcon-0.6-14/micEcon/NAMESPACE | 26 micEcon-0.6-14/micEcon/NEWS | 17 micEcon-0.6-14/micEcon/R/logDataSet.R |only micEcon-0.6-14/micEcon/R/predict.quadFuncEst.R |only micEcon-0.6-14/micEcon/R/predict.translogEst.R |only micEcon-0.6-14/micEcon/R/quadFuncEst.R | 81 micEcon-0.6-14/micEcon/R/quadFuncModel.R |only micEcon-0.6-14/micEcon/R/translogProdFuncMargCost.R | 75 micEcon-0.6-14/micEcon/man/logDataSet.Rd |only micEcon-0.6-14/micEcon/man/quadFuncEst.Rd | 2 micEcon-0.6-14/micEcon/man/translogCostEst.Rd | 2 micEcon-0.6-14/micEcon/man/translogEst.Rd | 2 micEcon-0.6-14/micEcon/man/translogProdFuncMargCost.Rd | 30 micEcon-0.6-14/micEcon/tests/logDataSetTest.R |only micEcon-0.6-14/micEcon/tests/logDataSetTest.Rout.save |only micEcon-0.6-14/micEcon/tests/quadFunc.R | 140 + micEcon-0.6-14/micEcon/tests/quadFunc.Rout.save | 1771 ++++++++++++---- micEcon-0.6-14/micEcon/tests/translog.R | 26 micEcon-0.6-14/micEcon/tests/translog.Rout.save | 973 ++++---- 36 files changed, 2095 insertions(+), 1116 deletions(-)
Title: Learn Data Science Through the "Data Science Live Book"
Description: Around 10% of almost any predictive modeling project is spent in predictive modeling, 'funModeling' and the book <http://livebook.datascienceheroes.com/> are intended to cover remaining 90%: data preparation, profiling, selecting best variables 'dataViz', assessing model performance and other functions.
Author: Pablo Casas
Maintainer: Pablo Casas <pcasas.biz@gmail.com>
Diff between funModeling versions 1.6.1 dated 2017-02-26 and 1.6.2 dated 2017-03-16
DESCRIPTION | 8 +++---- MD5 | 50 +++++++++++++++++++++++------------------------ NAMESPACE | 2 - R/cross_plot.R | 26 ++++++++++++------------ R/models_lib.R | 4 ++- man/auto_grouping.Rd | 2 - man/bayesian_plot.Rd | 2 - man/categ_analysis.Rd | 2 - man/coord_plot.Rd | 2 - man/correlation_table.Rd | 2 - man/cross_plot.Rd | 2 - man/data_country.Rd | 2 - man/desc_groups.Rd | 4 +-- man/desc_groups_rank.Rd | 2 - man/df_status.Rd | 2 - man/equal_freq.Rd | 2 - man/filter_vars.Rd | 2 - man/freq.Rd | 2 - man/gain_lift.Rd | 3 +- man/get_sample.Rd | 2 - man/heart_disease.Rd | 2 - man/model_performance.Rd | 2 - man/plotar.Rd | 2 - man/prep_outliers.Rd | 2 - man/range01.Rd | 2 - man/v_compare.Rd | 2 - 26 files changed, 69 insertions(+), 66 deletions(-)
Title: Automatic Generation of Exams in R
Description: Automatic generation of exams based on exercises in Markdown or LaTeX format,
possibly including R code for dynamic generation of exercise elements.
Exercise types include single-choice and multiple-choice questions, arithmetic problems,
string questions, and combinations thereof (cloze). Output formats include standalone
files (PDF, HTML, Docx, ODT, ...), Moodle XML, QTI 1.2 (for OLAT/OpenOLAT), QTI 2.1,
Blackboard, ARSnova, and TCExam. In addition to fully customizable PDF exams, a
standardized PDF format is provided that can be printed, scanned, and automatically evaluated.
Author: Achim Zeileis [aut, cre],
Bettina Gruen [aut],
Friedrich Leisch [aut],
Nikolaus Umlauf [aut],
Niels Smits [ctb],
Mirko Birbaumer [ctb],
Dominik Ernst [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between exams versions 2.2-0 dated 2016-11-10 and 2.2-1 dated 2017-03-16
DESCRIPTION | 20 +-- MD5 | 50 ++++---- NAMESPACE | 15 +- NEWS | 30 ++++ R/exams2html.R | 7 - R/exams2moodle.R | 11 - R/exams2nops.R | 2 R/exams2pandoc.R |only R/exams2qti12.R | 31 ++++- R/pandoc.R | 15 +- R/read_exercise.R | 1 R/search_files.R | 8 + R/stresstests.R | 263 +++++++++++++++++++++++++++++-------------- R/xexams.R | 17 ++ build/vignette.rds |binary inst/doc/exams.pdf |binary inst/doc/exams2.pdf |binary inst/exercises/boxhist2.Rmd |only inst/exercises/confint.Rmd |only inst/exercises/fourfold.Rmd | 2 inst/exercises/fourfold2.Rmd |only inst/exercises/tstat2.Rmd | 2 inst/exercises/tstat2.Rnw | 2 inst/pandoc |only inst/xml/ilias.xml |only man/exams2html.Rd | 19 --- man/exams2pandoc.Rd |only man/exams2qti12.Rd | 9 + man/match_exams_call.Rd |only man/stresstests.Rd |only 30 files changed, 357 insertions(+), 147 deletions(-)
Title: A Bayesian Semiparametric Factor Analysis Model for Subtype
Identification (Clustering)
Description: Gene expression profiles are commonly utilized to infer disease
subtypes and many clustering methods can be adopted for this task.
However, existing clustering methods may not perform well when
genes are highly correlated and many uninformative genes are included
for clustering. To deal with these challenges, we develop a novel
clustering method in the Bayesian setting. This method, called BCSub,
adopts an innovative semiparametric Bayesian factor analysis model
to reduce the dimension of the data to a few factor scores for
clustering. Specifically, the factor scores are assumed to follow
the Dirichlet process mixture model in order to induce clustering.
Author: Jiehuan Sun [aut, cre], Joshua L. Warren [aut], and Hongyu Zhao [aut]
Maintainer: Jiehuan Sun <jiehuan.sun@yale.edu>
Diff between BCSub versions 0.3 dated 2017-01-20 and 0.5 dated 2017-03-16
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ R/RcppExports.R | 2 +- build/vignette.rds |binary inst/doc/BCSub.pdf |binary src/RcppExports.cpp | 50 +++++++++++++++++++++++++------------------------- src/factor_DP_fun.cpp | 3 ++- src/init.c |only 8 files changed, 39 insertions(+), 37 deletions(-)
Title: Markov Chain Monte Carlo for Potts Models
Description: Do Markov chain Monte Carlo (MCMC) simulation of Potts models
(Potts, 1952, <https://doi.org/10.1017/S0305004100027419>),
which are the multi-color generalization of Ising models
(so, as as special case, also simulates Ising models).
Use the Swendsen-Wang algorithm (Swendsen and Wang, 1987,
<https://doi.org/10.1103/PhysRevLett.58.86>) so MCMC is fast.
Do maximum composite likelihood estimation of parameters
(Besag, 1975, <https://doi.org/10.2307/2987782>,
Lindsay, 1988, <https://doi.org/10.1090/conm/080>).
Author: Charles J. Geyer <charlie@stat.umn.edu> and Leif Johnson
<ltjohnson@google.com>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>
Diff between potts versions 0.5-6 dated 2017-03-15 and 0.5-7 dated 2017-03-16
ChangeLog | 5 +++++ DESCRIPTION | 24 ++++++++++++------------ MD5 | 8 ++++---- R/potts.R | 4 +++- inst/doc/cll.pdf |binary 5 files changed, 24 insertions(+), 17 deletions(-)
Title: Regularization Paths for SCAD and MCP Penalized Regression
Models
Description: Efficient algorithms for fitting regularization paths for linear or
logistic regression models penalized by MCP or SCAD, with optional additional
L2 penalty.
Author: Patrick Breheny [aut,cre]
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>
Diff between ncvreg versions 3.8-0 dated 2017-01-06 and 3.9-0 dated 2017-03-16
ncvreg-3.8-0/ncvreg/R/fir.R |only ncvreg-3.8-0/ncvreg/R/plot.fir.R |only ncvreg-3.8-0/ncvreg/inst/interactive-tests |only ncvreg-3.8-0/ncvreg/inst/tests/fir.R |only ncvreg-3.8-0/ncvreg/inst/tests/ncvreg.R |only ncvreg-3.8-0/ncvreg/inst/tests/single-lambda.R |only ncvreg-3.8-0/ncvreg/man/fir.Rd |only ncvreg-3.8-0/ncvreg/man/plot.fir.Rd |only ncvreg-3.8-0/ncvreg/src/ncvreg.c |only ncvreg-3.9-0/ncvreg/DESCRIPTION | 8 - ncvreg-3.9-0/ncvreg/MD5 | 67 ++++---- ncvreg-3.9-0/ncvreg/NAMESPACE | 4 ncvreg-3.9-0/ncvreg/NEWS | 8 + ncvreg-3.9-0/ncvreg/R/mfdr.R |only ncvreg-3.9-0/ncvreg/R/ncvreg.R | 24 +-- ncvreg-3.9-0/ncvreg/R/ncvsurv.R | 38 ++-- ncvreg-3.9-0/ncvreg/R/perm.ncvreg.R | 14 - ncvreg-3.9-0/ncvreg/R/permres.ncvreg.R | 6 ncvreg-3.9-0/ncvreg/R/plot.mfdr.R |only ncvreg-3.9-0/ncvreg/R/predict.surv.R | 4 ncvreg-3.9-0/ncvreg/R/std.R | 11 + ncvreg-3.9-0/ncvreg/R/summary-ncvreg.R | 15 + ncvreg-3.9-0/ncvreg/R/summary-ncvsurv.R | 9 - ncvreg-3.9-0/ncvreg/inst/doc/quick-start.pdf |binary ncvreg-3.9-0/ncvreg/inst/tests/auc.R |only ncvreg-3.9-0/ncvreg/inst/tests/binomial.R |only ncvreg-3.9-0/ncvreg/inst/tests/cv.ncvreg.R | 44 +++++ ncvreg-3.9-0/ncvreg/inst/tests/cv.ncvsurv.R | 49 ++++++ ncvreg-3.9-0/ncvreg/inst/tests/gaussian.R |only ncvreg-3.9-0/ncvreg/inst/tests/mfdr.R |only ncvreg-3.9-0/ncvreg/inst/tests/ncvsurv.R | 194 ++++++++++++++++++++++--- ncvreg-3.9-0/ncvreg/inst/tests/parallel.R | 64 +++++--- ncvreg-3.9-0/ncvreg/inst/tests/perm.R |only ncvreg-3.9-0/ncvreg/inst/tests/poisson.R |only ncvreg-3.9-0/ncvreg/inst/tests/special-cases.R |only ncvreg-3.9-0/ncvreg/man/mfdr.Rd |only ncvreg-3.9-0/ncvreg/man/ncvreg.Rd | 4 ncvreg-3.9-0/ncvreg/man/perm.ncvreg.Rd | 12 - ncvreg-3.9-0/ncvreg/man/plot-mfdr.Rd |only ncvreg-3.9-0/ncvreg/src/binomial.c | 45 +++-- ncvreg-3.9-0/ncvreg/src/mfdr_binomial.c |only ncvreg-3.9-0/ncvreg/src/mfdr_cox.c |only ncvreg-3.9-0/ncvreg/src/mfdr_gaussian.c |only ncvreg-3.9-0/ncvreg/src/ncvreg_init.c |only 44 files changed, 450 insertions(+), 170 deletions(-)
Title: Latent Variable Models
Description: Estimation and simulation of latent variable models.
Author: Klaus K. Holst [aut, cre],
Brice Ozenne [ctb],
Thomas Gerds [ctb]
Maintainer: Klaus K. Holst <klaus@holst.it>
Diff between lava versions 1.4.8 dated 2017-03-16 and 1.5 dated 2017-03-16
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 21 +++++++++++++++++++++ R/normal.R | 2 -- R/ordinal.R | 2 +- inst/doc/reference.pdf |binary 6 files changed, 31 insertions(+), 12 deletions(-)
Title: Fast and Simple Object Serialization to Protocol Buffers
Description: Optimized C++ implementations for reading and writing protocol-buffers.
Currently supports 'rexp.proto' for serializing R objects and 'geobuf.proto' for
geojson data. This lightweight package is complementary to the much larger
'RProtoBuf' package which provides a full featured toolkit for working with
protocol-buffers in R.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between protolite versions 1.5 dated 2016-09-06 and 1.6 dated 2017-03-16
DESCRIPTION | 14 +++++++------- LICENSE | 2 +- MD5 | 25 +++++++++++++------------ NEWS | 3 +++ R/RcppExports.R | 2 +- R/serialize_pb.R | 2 +- README.md | 12 ++++++------ configure | 5 ++++- man/geobuf.Rd | 3 +-- man/serialize_pb.Rd | 5 ++--- src/Makevars.win | 10 ++++++---- src/RcppExports.cpp | 34 +++++++++++++++++----------------- src/register.c |only tools/winlibs.R | 6 +++--- 14 files changed, 65 insertions(+), 58 deletions(-)
Title: A Tool for Downloading Functional Traits Data for Plant Species
Description: Plant ecologists often need to collect "traits" data
about plant species which are often scattered among various
databases: TR8 contains a set of tools which take care of
automatically retrieving some of those functional traits data
for plant species from publicly available databases (Biolflor,
The Ecological Flora of the British Isles, LEDA traitbase, Ellenberg
values for Italian Flora, Mycorrhizal intensity databases, Catminat, BROT,
PLANTS, Jepson Flora Project).
The TR8 name, inspired by "car plates" jokes, was chosen since
it both reminds of the main object of the package and is
extremely short to type.
Author: Gionata Bocci <boccigionata@gmail.com>
Maintainer: Gionata Bocci <boccigionata@gmail.com>
Diff between TR8 versions 0.9.15 dated 2016-12-14 and 0.9.16 dated 2017-03-16
DESCRIPTION | 30 ++--- MD5 | 41 +++---- NEWS | 4 R/TR8-package.R | 2 R/ecoflora.R | 228 ++++++++++++++++++++--------------------- R/ecoflora_download_url.R | 2 R/leda_general.R | 29 +++++ R/tr8.R | 10 + inst/doc/Expanding_TR8.pdf |binary inst/doc/TR8.Rnw | 2 inst/doc/TR8.pdf |binary inst/doc/TR8_workflow.Rnw | 2 inst/doc/TR8_workflow.pdf |binary man/ECOFLORA_df.Rd | 4 man/biolflor_lookup.Rd | 10 - man/leda_fc.Rd |only man/tr8.Rd | 13 +- man/traits_eco.Rd | 12 +- man/traits_pollen_Biolflor.Rd | 8 - man/traits_special_Biolflor.Rd | 6 - vignettes/TR8.Rnw | 2 vignettes/TR8_workflow.Rnw | 2 22 files changed, 225 insertions(+), 182 deletions(-)
Title: One-Way Tests for Independent Groups Designs
Description: Performs one-way tests for independent groups designs, graphical approaches, and assess variance homogeneity and normality of each group via tests and plots.
Author: Osman Dag [aut, cre], Anil Dolgun [aut], N. Meric Konar [aut]
Maintainer: Osman Dag <osman.dag@hacettepe.edu.tr>
Diff between onewaytests versions 1.2 dated 2016-07-29 and 1.3 dated 2017-03-16
DESCRIPTION | 18 ++++++++-------- MD5 | 42 ++++++++++++++++++++++++-------------- NAMESPACE | 17 ++++++++++----- R/ag.test.R | 54 +++++++++++++++++++++++++++++++++++++------------ R/aov.test.R | 56 ++++++++++++++++++++++++++++++++++++++------------- R/bf.test.R | 56 +++++++++++++++++++++++++++++++++++++-------------- R/describe.R |only R/gplot.R |only R/homog.test.R |only R/james.test.R | 45 ++++++++++++++++++++++++++++++----------- R/kw.test.R | 53 ++++++++++++++++++++++++++++++++++-------------- R/multcomp.R |only R/multcomp.jt.R |only R/nor.test.R |only R/welch.test.R | 58 ++++++++++++++++++++++++++++++++++++----------------- man/ag.test.Rd | 19 ++++++++++++----- man/aov.test.Rd | 19 +++++++++++------ man/bf.test.Rd | 21 ++++++++++--------- man/describe.Rd |only man/gplot.Rd |only man/homog.test.Rd |only man/james.test.Rd | 22 ++++++++++---------- man/kw.test.Rd | 18 ++++++++++------ man/multcomp.Rd |only man/multcomp.jt.Rd |only man/nor.test.Rd |only man/onewaytests.Rd | 8 +++---- man/welch.test.Rd | 27 ++++++++++++++++-------- 28 files changed, 366 insertions(+), 167 deletions(-)
Title: Handling Missing Values with Multivariate Data Analysis
Description: Imputation of incomplete continuous or categorical datasets; Missing values are imputed with a principal component analysis (PCA), a multiple correspondence analysis (MCA) model or a multiple factor analysis (MFA) model; Perform multiple imputation with and in PCA or MCA.
Author: Francois Husson, Julie Josse
Maintainer: Francois Husson <husson@agrocampus-ouest.fr>
Diff between missMDA versions 1.10 dated 2016-03-25 and 1.11 dated 2017-03-16
missMDA-1.10/missMDA/R/MIMCA.r |only missMDA-1.10/missMDA/R/MIPCA.r |only missMDA-1.10/missMDA/R/Overimpute.r |only missMDA-1.11/missMDA/DESCRIPTION | 14 +++---- missMDA-1.11/missMDA/MD5 | 30 ++++++++------- missMDA-1.11/missMDA/NAMESPACE | 7 ++- missMDA-1.11/missMDA/R/MIMCA.R |only missMDA-1.11/missMDA/R/MIPCA.R |only missMDA-1.11/missMDA/R/Overimpute.R |only missMDA-1.11/missMDA/R/estim_ncpFAMD.R | 60 +++++++++++++----------------- missMDA-1.11/missMDA/R/estim_ncpMCA.R | 41 ++++++++++++++------ missMDA-1.11/missMDA/R/estim_ncpPCA.R | 14 +++---- missMDA-1.11/missMDA/R/imputeCA.r |only missMDA-1.11/missMDA/R/plot.MIMCA.R |only missMDA-1.11/missMDA/R/plot.MIPCA.R | 6 +-- missMDA-1.11/missMDA/man/estim_ncpFAMD.Rd | 4 +- missMDA-1.11/missMDA/man/estim_ncpMCA.Rd | 4 +- missMDA-1.11/missMDA/man/estim_ncpPCA.Rd | 3 + missMDA-1.11/missMDA/man/imputeCA.Rd |only missMDA-1.11/missMDA/man/imputeFAMD.Rd | 1 missMDA-1.11/missMDA/man/plot.MIMCA.Rd |only 21 files changed, 103 insertions(+), 81 deletions(-)
Title: Mixed Effect Excess Hazard Models
Description: Fit flexible (excess) hazard regression models with the possibility of including non-proportional effects of covariables and of adding a random effect at the cluster level (corresponding to a shared frailty).
Author: Hadrien Charvat, Aurelien Belot
Maintainer: Hadrien Charvat <chadrien@ncc.go.jp>
Diff between mexhaz versions 1.2 dated 2017-03-14 and 1.3 dated 2017-03-16
mexhaz-1.2/mexhaz/R/predict.mexhaz.r |only mexhaz-1.3/mexhaz/DESCRIPTION | 10 ++++----- mexhaz-1.3/mexhaz/MD5 | 38 +++++++++++++++++------------------ mexhaz-1.3/mexhaz/NEWS | 6 +++++ mexhaz-1.3/mexhaz/R/mexhaz.R | 6 ++--- mexhaz-1.3/mexhaz/R/predict.mexhaz.R |only mexhaz-1.3/mexhaz/src/DeltaBs0R.c | 2 - mexhaz-1.3/mexhaz/src/DeltaBs1R.c | 2 - mexhaz-1.3/mexhaz/src/DeltaBs23R.c | 2 - mexhaz-1.3/mexhaz/src/DeltaNsR.c | 12 +++++------ mexhaz-1.3/mexhaz/src/DeltaWeibR.c | 2 - mexhaz-1.3/mexhaz/src/FrailtyAdapt.c | 2 - mexhaz-1.3/mexhaz/src/HazardBs0C.c | 2 - mexhaz-1.3/mexhaz/src/HazardBs0R.c | 2 - mexhaz-1.3/mexhaz/src/HazardBs1C.c | 2 - mexhaz-1.3/mexhaz/src/HazardBs1R.c | 2 - mexhaz-1.3/mexhaz/src/HazardBs23C.c | 2 - mexhaz-1.3/mexhaz/src/HazardBs23R.c | 2 - mexhaz-1.3/mexhaz/src/HazardNsC.c | 22 ++++++++++---------- mexhaz-1.3/mexhaz/src/HazardNsR.c | 20 +++++++++--------- mexhaz-1.3/mexhaz/src/SplineFunc.c | 20 +++++++++--------- 21 files changed, 81 insertions(+), 75 deletions(-)
Title: Automatic Generation of Qualitative Color Palettes
Description: Automatic generation of distinct qualitative color palettes,
optionally adapted to color blindness. It takes a subspace of the HSL color
space as input and projects it to the DIN99d color space where it selects
and return colors that are maximally distinct.
Author: Johan Larsson [aut, cre]
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Diff between qualpalr versions 0.3.1 dated 2016-12-22 and 0.4.0 dated 2017-03-16
DESCRIPTION | 12 - MD5 | 43 +++-- NAMESPACE | 10 - NEWS.md | 15 + R/autopal.R |only R/color-conversion.R | 12 - R/main.R | 348 ++++++++++++++++++++++------------------- R/plotting.R |only R/qualpalr.R | 7 README.md | 48 +++-- build/vignette.rds |binary inst/CITATION |only inst/doc/introduction.html | 83 +++------ man/autopal.Rd |only man/pairs.qualpal.Rd | 17 -- man/plot.qualpal.Rd | 9 - man/print.qualpal.Rd |only man/qualpal.Rd | 111 ++++++++----- man/qualpalr-package.Rd |only src/Makevars.win | 1 src/RcppExports.cpp | 4 src/init.c |only src/main.cpp | 40 +++- tests/testthat/test_autopal.R |only tests/testthat/test_plotting.R |only tests/testthat/test_qualpal.R | 27 ++- tools |only 27 files changed, 446 insertions(+), 341 deletions(-)
Title: Demand Analysis with the Almost Ideal Demand System (AIDS)
Description: Functions and tools
for analysing consumer demand
with the Almost Ideal Demand System (AIDS)
suggested by Deaton and Muellbauer (1980).
Author: Arne Henningsen
Maintainer: Arne Henningsen <arne.henningsen@gmail.com>
Diff between micEconAids versions 0.6-16 dated 2014-05-17 and 0.6-18 dated 2017-03-16
DESCRIPTION | 14 ++++++++------ MD5 | 16 +++++++++++----- NAMESPACE | 8 ++++++++ NEWS | 5 +++++ R/aidsCalc.R | 4 ++-- build |only inst |only man/USMeatConsump.Rd | 2 +- vignettes |only 9 files changed, 35 insertions(+), 14 deletions(-)
Title: Compare Fitted Models
Description: A collection of functions for comparing fitted models.
Author: Kjell Konis <kjell.konis@me.com>.
Maintainer: Kjell Konis <kjell.konis@me.com>
Diff between fit.models versions 0.5-10 dated 2013-02-23 and 0.5-13 dated 2017-03-16
fit.models-0.5-10/fit.models/R/coef.glmfm.q |only fit.models-0.5-10/fit.models/R/coef.lmfm.q |only fit.models-0.5-10/fit.models/R/fit.models.q |only fit.models-0.5-10/fit.models/R/fit.models.registry.q |only fit.models-0.5-10/fit.models/R/fm.registry.q |only fit.models-0.5-10/fit.models/R/fmclass.add.class.q |only fit.models-0.5-10/fit.models/R/fmclass.register.q |only fit.models-0.5-10/fit.models/R/indexPlot.lmfm.q |only fit.models-0.5-10/fit.models/R/kernDenPlot.lmfm.q |only fit.models-0.5-10/fit.models/R/leverage.q |only fit.models-0.5-10/fit.models/R/library.q |only fit.models-0.5-10/fit.models/R/overlaidKernDenPlot.lmfm.q |only fit.models-0.5-10/fit.models/R/overlaidQQPlot.lmfm.q |only fit.models-0.5-10/fit.models/R/panel.addons.q |only fit.models-0.5-10/fit.models/R/plot.glmfm.q |only fit.models-0.5-10/fit.models/R/plot.lmfm.q |only fit.models-0.5-10/fit.models/R/print.glmfm.q |only fit.models-0.5-10/fit.models/R/print.lmfm.q |only fit.models-0.5-10/fit.models/R/print.summary.glmfm.q |only fit.models-0.5-10/fit.models/R/print.summary.lmfm.q |only fit.models-0.5-10/fit.models/R/qqPlot.lmfm.q |only fit.models-0.5-10/fit.models/R/rmodified.q |only fit.models-0.5-10/fit.models/R/scatterPlot.lmfm.q |only fit.models-0.5-10/fit.models/R/simpleRegPlot.lmfm.q |only fit.models-0.5-10/fit.models/R/summary.glmfm.q |only fit.models-0.5-10/fit.models/R/summary.lmfm.q |only fit.models-0.5-10/fit.models/man/fmregistry.Rd |only fit.models-0.5-10/fit.models/man/leverage.Rd |only fit.models-0.5-10/fit.models/man/rmodified.Rd |only fit.models-0.5-13/fit.models/DESCRIPTION | 20 - fit.models-0.5-13/fit.models/MD5 | 92 +++----- fit.models-0.5-13/fit.models/NAMESPACE | 106 +++++---- fit.models-0.5-13/fit.models/R/coef.glmfm.R |only fit.models-0.5-13/fit.models/R/coef.lmfm.R |only fit.models-0.5-13/fit.models/R/e.R |only fit.models-0.5-13/fit.models/R/fit.models.R |only fit.models-0.5-13/fit.models/R/fmclass.register.R |only fit.models-0.5-13/fit.models/R/indexPlot.lmfm.R |only fit.models-0.5-13/fit.models/R/kernDenPlot.lmfm.R |only fit.models-0.5-13/fit.models/R/mahalanobis.R |only fit.models-0.5-13/fit.models/R/overlaidKernDenPlot.lmfm.R |only fit.models-0.5-13/fit.models/R/overlaidQQPlot.lmfm.R |only fit.models-0.5-13/fit.models/R/panel.addons.R |only fit.models-0.5-13/fit.models/R/plot.glmfm.R |only fit.models-0.5-13/fit.models/R/plot.lmfm.R |only fit.models-0.5-13/fit.models/R/print.glmfm.R |only fit.models-0.5-13/fit.models/R/print.lmfm.R |only fit.models-0.5-13/fit.models/R/print.summary.glmfm.R |only fit.models-0.5-13/fit.models/R/print.summary.lmfm.R |only fit.models-0.5-13/fit.models/R/qqPlot.lmfm.R |only fit.models-0.5-13/fit.models/R/scatterPlot.lmfm.R |only fit.models-0.5-13/fit.models/R/simpleRegPlot.lmfm.R |only fit.models-0.5-13/fit.models/R/summary.glmfm.R |only fit.models-0.5-13/fit.models/R/summary.lmfm.R |only fit.models-0.5-13/fit.models/R/zzz.R |only fit.models-0.5-13/fit.models/man/fit.models.Rd | 82 +++---- fit.models-0.5-13/fit.models/man/fmclass.Rd |only fit.models-0.5-13/fit.models/man/indexPlot.lmfm.Rd | 31 +- fit.models-0.5-13/fit.models/man/kernDenPlot.lmfm.Rd | 23 -- fit.models-0.5-13/fit.models/man/mahalanobis.Rd |only fit.models-0.5-13/fit.models/man/overlaidKernDenPlot.lmfm.Rd | 25 -- fit.models-0.5-13/fit.models/man/overlaidQQPlot.lmfm.Rd | 25 -- fit.models-0.5-13/fit.models/man/plot.glmfm.Rd | 56 ++-- fit.models-0.5-13/fit.models/man/plot.lmfm.Rd | 78 ++---- fit.models-0.5-13/fit.models/man/qqPlot.lmfm.Rd | 44 ++- fit.models-0.5-13/fit.models/man/scatterPlot.lmfm.Rd | 31 +- fit.models-0.5-13/fit.models/man/simpleRegPlot.lmfm.Rd | 33 +- fit.models-0.5-13/fit.models/man/summary.glmfm.Rd | 30 +- fit.models-0.5-13/fit.models/man/summary.lmfm.Rd | 31 +- fit.models-0.5-13/fit.models/tests/Examples/fit.models-Ex.Rout.save | 114 +++------- fit.models-0.5-13/fit.models/tests/glmfm.R | 8 fit.models-0.5-13/fit.models/tests/glmfm.Rout.save | 35 +-- fit.models-0.5-13/fit.models/tests/lmfm.R | 12 - fit.models-0.5-13/fit.models/tests/lmfm.Rout.save | 45 ++- 74 files changed, 446 insertions(+), 475 deletions(-)
Title: Access Elevation Data from Various APIs
Description: Several web services are available that provide access to elevation
data. This package provides access to several of those services and
returns elevation data either as a SpatialPointsDataFrame from
point elevation services or as a raster object from raster
elevation services. Currently, the package supports access to the
Mapzen Elevation Service <https://mapzen.com/documentation/elevation/elevation-service/>,
Mapzen Terrain Service <https://mapzen.com/documentation/terrain-tiles/>,
Amazon Web Services Terrain Tiles <https://aws.amazon.com/public-datasets/terrain/> and the USGS
Elevation Point Query Service <http://ned.usgs.gov/epqs/>.
Author: Jeffrey Hollister [aut, cre],
Tarak Shah [ctb]
Maintainer: Jeffrey Hollister <hollister.jeff@epa.gov>
Diff between elevatr versions 0.1.1 dated 2017-01-27 and 0.1.3 dated 2017-03-16
DESCRIPTION | 6 ++-- MD5 | 21 ++++++++------- R/get_elev_raster.R | 2 - README.md | 12 ++++++++ inst/CITATION |only inst/doc/introduction_to_elevatr.R | 23 +++++++++++------ inst/doc/introduction_to_elevatr.Rmd | 24 ++++++++++++----- inst/doc/introduction_to_elevatr.html | 46 ++++++++++++++++++---------------- tests/testthat/test-get_elev_point.R | 14 +++++----- tests/testthat/test-get_elev_raster.R | 15 +++++------ tests/testthat/test-internal.R | 12 +++++++- vignettes/introduction_to_elevatr.Rmd | 24 ++++++++++++----- 12 files changed, 125 insertions(+), 74 deletions(-)
Title: Survival Analysis
Description: Contains the core survival analysis routines, including
definition of Surv objects,
Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models,
and parametric accelerated failure time models.
Author: Terry M Therneau [aut, cre],
Thomas Lumley [ctb, trl] (original S->R port and maintainer until 2009)
Maintainer: Terry M Therneau <therneau.terry@mayo.edu>
Diff between survival versions 2.40-1 dated 2016-10-30 and 2.41-2 dated 2017-03-16
survival-2.40-1/survival/R/format.Surv.S |only survival-2.40-1/survival/R/summary.pyears.S |only survival-2.40-1/survival/ToDo |only survival-2.40-1/survival/noweb/plot.Rnw.orig |only survival-2.40-1/survival/noweb/zzz |only survival-2.40-1/survival/tests/rounding.R |only survival-2.41-2/survival/DESCRIPTION | 6 survival-2.41-2/survival/MD5 | 267 ++++++----- survival-2.41-2/survival/NAMESPACE | 7 survival-2.41-2/survival/R/Surv.S | 15 survival-2.41-2/survival/R/aareg.S | 3 survival-2.41-2/survival/R/aeqSurv.R |only survival-2.41-2/survival/R/agreg.fit.R | 12 survival-2.41-2/survival/R/anova.coxphlist.S | 4 survival-2.41-2/survival/R/cch.R | 45 + survival-2.41-2/survival/R/cipoisson.R |only survival-2.41-2/survival/R/coxph.R | 27 - survival-2.41-2/survival/R/coxph.control.S | 7 survival-2.41-2/survival/R/finegray.R | 13 survival-2.41-2/survival/R/frailty.gamma.S | 5 survival-2.41-2/survival/R/frailty.gaussian.S | 18 survival-2.41-2/survival/R/frailty.t.S | 12 survival-2.41-2/survival/R/model.matrix.coxph.R | 2 survival-2.41-2/survival/R/predict.coxph.R | 16 survival-2.41-2/survival/R/predict.survreg.S | 81 +-- survival-2.41-2/survival/R/print.pyears.R | 409 +++++++++++++++++- survival-2.41-2/survival/R/print.summary.coxph.S | 5 survival-2.41-2/survival/R/pspline.R | 26 - survival-2.41-2/survival/R/pyears.R | 34 - survival-2.41-2/survival/R/ratetable.S | 12 survival-2.41-2/survival/R/residuals.coxph.S | 3 survival-2.41-2/survival/R/summary.aareg.S | 3 survival-2.41-2/survival/R/summary.coxph.S | 3 survival-2.41-2/survival/R/summary.survreg.S | 3 survival-2.41-2/survival/R/survSplit.R | 12 survival-2.41-2/survival/R/survdiff.S | 8 survival-2.41-2/survival/R/survexp.R | 6 survival-2.41-2/survival/R/survfit.R | 10 survival-2.41-2/survival/R/survfit.coxph.R | 9 survival-2.41-2/survival/R/survfit.matrix.R | 62 +- survival-2.41-2/survival/R/survfitCI.R | 24 - survival-2.41-2/survival/R/survpenal.fit.S | 32 - survival-2.41-2/survival/R/survreg.S | 43 - survival-2.41-2/survival/R/survreg.fit.S | 3 survival-2.41-2/survival/R/tcut.S | 6 survival-2.41-2/survival/R/tmerge.R | 81 ++- survival-2.41-2/survival/build/vignette.rds |binary survival-2.41-2/survival/inst/NEWS.Rd | 59 ++ survival-2.41-2/survival/inst/doc/adjcurve.Rnw | 2 survival-2.41-2/survival/inst/doc/adjcurve.pdf |binary survival-2.41-2/survival/inst/doc/compete.Rnw | 18 survival-2.41-2/survival/inst/doc/compete.pdf |binary survival-2.41-2/survival/inst/doc/multi.Rnw | 14 survival-2.41-2/survival/inst/doc/multi.pdf |binary survival-2.41-2/survival/inst/doc/splines.Rnw | 4 survival-2.41-2/survival/inst/doc/splines.pdf |binary survival-2.41-2/survival/inst/doc/tests.pdf |binary survival-2.41-2/survival/inst/doc/tiedtimes.R |only survival-2.41-2/survival/inst/doc/tiedtimes.Rnw |only survival-2.41-2/survival/inst/doc/tiedtimes.pdf |only survival-2.41-2/survival/inst/doc/timedep.R | 27 - survival-2.41-2/survival/inst/doc/timedep.Rnw | 54 +- survival-2.41-2/survival/inst/doc/timedep.pdf |binary survival-2.41-2/survival/inst/doc/validate.Rnw | 12 survival-2.41-2/survival/inst/doc/validate.pdf |binary survival-2.41-2/survival/man/Surv.Rd | 2 survival-2.41-2/survival/man/aareg.Rd | 8 survival-2.41-2/survival/man/aeqSurv.Rd |only survival-2.41-2/survival/man/agreg.fit.Rd | 2 survival-2.41-2/survival/man/basehaz.Rd | 2 survival-2.41-2/survival/man/bladder.Rd | 2 survival-2.41-2/survival/man/cch.Rd | 2 survival-2.41-2/survival/man/cgd.Rd | 2 survival-2.41-2/survival/man/cgd0.Rd | 2 survival-2.41-2/survival/man/cipoisson.Rd |only survival-2.41-2/survival/man/clogit.Rd | 10 survival-2.41-2/survival/man/coxph.Rd | 4 survival-2.41-2/survival/man/coxph.control.Rd | 11 survival-2.41-2/survival/man/coxph.wtest.Rd | 2 survival-2.41-2/survival/man/dsurvreg.Rd | 4 survival-2.41-2/survival/man/finegray.Rd | 6 survival-2.41-2/survival/man/frailty.Rd | 8 survival-2.41-2/survival/man/mgus.Rd | 4 survival-2.41-2/survival/man/mgus2.Rd | 4 survival-2.41-2/survival/man/model.matrix.coxph.Rd | 2 survival-2.41-2/survival/man/myeloid.Rd | 2 survival-2.41-2/survival/man/pbcseq.Rd | 4 survival-2.41-2/survival/man/plot.survfit.Rd | 2 survival-2.41-2/survival/man/predict.coxph.Rd | 6 survival-2.41-2/survival/man/pyears.Rd | 3 survival-2.41-2/survival/man/quantile.survfit.Rd | 6 survival-2.41-2/survival/man/rhDNase.Rd | 4 survival-2.41-2/survival/man/strata.Rd | 2 survival-2.41-2/survival/man/summary.pyears.Rd |only survival-2.41-2/survival/man/summary.survexp.Rd | 2 survival-2.41-2/survival/man/survConcordance.Rd | 4 survival-2.41-2/survival/man/survexp.object.Rd | 2 survival-2.41-2/survival/man/survfit.Rd | 2 survival-2.41-2/survival/man/survfit.coxph.Rd | 6 survival-2.41-2/survival/man/survfit.formula.Rd | 9 survival-2.41-2/survival/man/survfit.matrix.Rd | 40 + survival-2.41-2/survival/man/survfitcoxph.fit.Rd | 2 survival-2.41-2/survival/man/survival-internal.Rd | 4 survival-2.41-2/survival/man/survreg.distributions.Rd | 4 survival-2.41-2/survival/man/survreg.object.Rd | 2 survival-2.41-2/survival/man/tmerge.Rd | 24 - survival-2.41-2/survival/man/uspop2.Rd | 2 survival-2.41-2/survival/noweb/Makefile | 3 survival-2.41-2/survival/noweb/agreg.Rnw | 22 survival-2.41-2/survival/noweb/cch.Rnw |only survival-2.41-2/survival/noweb/coxph.Rnw | 31 - survival-2.41-2/survival/noweb/coxsurv.Rnw | 10 survival-2.41-2/survival/noweb/finegray.Rnw | 20 survival-2.41-2/survival/noweb/msurv.nw | 1 survival-2.41-2/survival/noweb/pyears.Rnw | 37 - survival-2.41-2/survival/noweb/pyears2.Rnw |only survival-2.41-2/survival/noweb/survexp.Rnw | 6 survival-2.41-2/survival/noweb/survfit.Rnw | 12 survival-2.41-2/survival/noweb/survfitCI.Rnw | 24 - survival-2.41-2/survival/noweb/survfitKM.Rnw | 2 survival-2.41-2/survival/noweb/tmerge.Rnw | 97 ++-- survival-2.41-2/survival/src/agfit5.c | 3 survival-2.41-2/survival/src/coxfit5.c | 3 survival-2.41-2/survival/src/init.c | 13 survival-2.41-2/survival/src/survfitci.c | 1 survival-2.41-2/survival/tests/coxsurv.R | 36 - survival-2.41-2/survival/tests/coxsurv.Rout.save | 49 -- survival-2.41-2/survival/tests/finegray.R | 14 survival-2.41-2/survival/tests/finegray.Rout.save | 24 - survival-2.41-2/survival/tests/r_sas.R | 1 survival-2.41-2/survival/tests/r_sas.Rout.save | 9 survival-2.41-2/survival/tests/tiedtime.R | 10 survival-2.41-2/survival/tests/tiedtime.Rout.save | 22 survival-2.41-2/survival/tests/tmerge.R | 4 survival-2.41-2/survival/tests/tmerge.Rout.save | 12 survival-2.41-2/survival/tests/tmerge2.R |only survival-2.41-2/survival/tests/tmerge2.Rout.save |only survival-2.41-2/survival/vignettes/adjcurve.Rnw | 2 survival-2.41-2/survival/vignettes/compete.Rnw | 18 survival-2.41-2/survival/vignettes/multi.Rnw | 14 survival-2.41-2/survival/vignettes/splines.Rnw | 4 survival-2.41-2/survival/vignettes/tiedtimes.Rnw |only survival-2.41-2/survival/vignettes/timedep.Rnw | 54 +- survival-2.41-2/survival/vignettes/validate.Rnw | 12 144 files changed, 1443 insertions(+), 860 deletions(-)
Title: "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et
al.
Description: Methods for Cluster analysis. Much extended the original from
Peter Rousseeuw, Anja Struyf and Mia Hubert,
based on Kaufman and Rousseeuw (1990) "Finding Groups in Data".
Author: Martin Maechler [aut, cre],
Peter Rousseeuw [aut] (Fortran original),
Anja Struyf [aut] (S original),
Mia Hubert [aut] (S original),
Kurt Hornik [trl, ctb] (port to R; maintenance(1999-2000)),
Matthias Studer [ctb],
Pierre Roudier [ctb],
Juan Gonzalez [ctb]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between cluster versions 2.0.5 dated 2016-10-08 and 2.0.6 dated 2017-03-16
cluster-2.0.5/cluster/src/mona.f |only cluster-2.0.6/cluster/ChangeLog | 6 cluster-2.0.6/cluster/DESCRIPTION | 8 cluster-2.0.6/cluster/MD5 | 41 cluster-2.0.6/cluster/R/mona.q | 96 cluster-2.0.6/cluster/R/pam.q | 47 cluster-2.0.6/cluster/inst/NEWS.Rd | 95 cluster-2.0.6/cluster/man/clusGap.Rd | 4 cluster-2.0.6/cluster/man/mona.Rd | 56 cluster-2.0.6/cluster/man/pam.Rd | 4 cluster-2.0.6/cluster/src/cluster.h | 2 cluster-2.0.6/cluster/src/init.c | 4 cluster-2.0.6/cluster/src/mona.c |only cluster-2.0.6/cluster/src/pam.c | 2 cluster-2.0.6/cluster/tests/agnes-ex.Rout.save | 30 cluster-2.0.6/cluster/tests/clara-NAs.Rout.save | 8 cluster-2.0.6/cluster/tests/clara.Rout.save | 22 cluster-2.0.6/cluster/tests/diana-ex.Rout.save | 22 cluster-2.0.6/cluster/tests/mona.R | 71 cluster-2.0.6/cluster/tests/mona.Rout.save | 2762 ++++++++++++++- cluster-2.0.6/cluster/tests/pam.Rout.save | 54 cluster-2.0.6/cluster/tests/silhouette-default.Rout.save | 16 cluster-2.0.6/cluster/tests/withAutoprint.R |only 23 files changed, 3093 insertions(+), 257 deletions(-)
Title: Genome Interval Arithmetic in R
Description: Read and manipulate genome intervals and signals. Provides
functionality similar to command-line tool suites within R,
enabling interactive analysis and visualization of genome-scale data.
Author: Jay Hesselberth [aut, cre],
Kent Riemondy [aut],
Ryan Sheridan [ctb]
Maintainer: Jay Hesselberth <jay.hesselberth@gmail.com>
Diff between valr versions 0.1.1 dated 2016-12-01 and 0.1.2 dated 2017-03-16
valr-0.1.1/valr/R/bed_sort.r |only valr-0.1.1/valr/R/launch_shiny.r |only valr-0.1.1/valr/inst/shiny |only valr-0.1.1/valr/man/launch_shiny.Rd |only valr-0.1.2/valr/DESCRIPTION | 20 - valr-0.1.2/valr/LICENSE | 4 valr-0.1.2/valr/MD5 | 189 +++++++------- valr-0.1.2/valr/NAMESPACE | 3 valr-0.1.2/valr/NEWS.md | 24 + valr-0.1.2/valr/R/bed12_to_exons.r | 2 valr-0.1.2/valr/R/bed_absdist.r | 4 valr-0.1.2/valr/R/bed_closest.r | 94 +++---- valr-0.1.2/valr/R/bed_cluster.r | 38 +- valr-0.1.2/valr/R/bed_complement.r | 2 valr-0.1.2/valr/R/bed_coverage.R | 8 valr-0.1.2/valr/R/bed_flank.r | 2 valr-0.1.2/valr/R/bed_glyph.r | 158 ++++++------ valr-0.1.2/valr/R/bed_intersect.r | 55 ++-- valr-0.1.2/valr/R/bed_makewindows.r | 54 +--- valr-0.1.2/valr/R/bed_map.r | 2 valr-0.1.2/valr/R/bed_merge.r | 12 valr-0.1.2/valr/R/bed_slop.r | 2 valr-0.1.2/valr/R/bed_subtract.r | 2 valr-0.1.2/valr/R/globals.r | 4 valr-0.1.2/valr/R/read_bed.r | 4 valr-0.1.2/valr/R/sorting.r |only valr-0.1.2/valr/R/valr.r | 2 valr-0.1.2/valr/README.md | 8 valr-0.1.2/valr/build/vignette.rds |binary valr-0.1.2/valr/inst/doc/interval-stats.R | 2 valr-0.1.2/valr/inst/doc/interval-stats.Rmd | 3 valr-0.1.2/valr/inst/doc/interval-stats.html | 134 +++++----- valr-0.1.2/valr/inst/doc/valr.R | 45 +-- valr-0.1.2/valr/inst/doc/valr.Rmd | 50 +-- valr-0.1.2/valr/inst/doc/valr.html | 106 ++++---- valr-0.1.2/valr/inst/include/IntervalTree.h | 28 +- valr-0.1.2/valr/inst/include/valr.h | 6 valr-0.1.2/valr/man/bed12_to_exons.Rd | 1 valr-0.1.2/valr/man/bed_absdist.Rd | 3 valr-0.1.2/valr/man/bed_closest.Rd | 38 +- valr-0.1.2/valr/man/bed_cluster.Rd | 7 valr-0.1.2/valr/man/bed_complement.Rd | 1 valr-0.1.2/valr/man/bed_coverage.Rd | 1 valr-0.1.2/valr/man/bed_fisher.Rd | 3 valr-0.1.2/valr/man/bed_flank.Rd | 1 valr-0.1.2/valr/man/bed_glyph.Rd | 10 valr-0.1.2/valr/man/bed_intersect.Rd | 14 - valr-0.1.2/valr/man/bed_jaccard.Rd | 3 valr-0.1.2/valr/man/bed_makewindows.Rd | 1 valr-0.1.2/valr/man/bed_map.Rd | 3 valr-0.1.2/valr/man/bed_merge.Rd | 1 valr-0.1.2/valr/man/bed_projection.Rd | 3 valr-0.1.2/valr/man/bed_random.Rd | 1 valr-0.1.2/valr/man/bed_reldist.Rd | 3 valr-0.1.2/valr/man/bed_shift.Rd | 1 valr-0.1.2/valr/man/bed_shuffle.Rd | 1 valr-0.1.2/valr/man/bed_slop.Rd | 1 valr-0.1.2/valr/man/bed_sort.Rd | 10 valr-0.1.2/valr/man/bed_subtract.Rd | 1 valr-0.1.2/valr/man/bed_window.Rd | 1 valr-0.1.2/valr/man/bound_intervals.Rd | 1 valr-0.1.2/valr/man/db.Rd | 3 valr-0.1.2/valr/man/flip_strands.Rd | 1 valr-0.1.2/valr/man/interval_spacing.Rd | 1 valr-0.1.2/valr/man/read_bed.Rd | 3 valr-0.1.2/valr/man/read_genome.Rd | 1 valr-0.1.2/valr/man/read_vcf.Rd | 1 valr-0.1.2/valr/man/sorting.Rd |only valr-0.1.2/valr/man/valr.Rd | 10 valr-0.1.2/valr/man/valr_example.Rd | 1 valr-0.1.2/valr/src/absdist.cpp | 2 valr-0.1.2/valr/src/closest.cpp | 17 - valr-0.1.2/valr/src/complement.cpp | 4 valr-0.1.2/valr/src/coverage.cpp | 16 - valr-0.1.2/valr/src/init.c |only valr-0.1.2/valr/src/intersect.cpp | 8 valr-0.1.2/valr/src/merge.cpp | 47 ++- valr-0.1.2/valr/src/random.cpp | 4 valr-0.1.2/valr/src/reldist.cpp | 2 valr-0.1.2/valr/src/shuffle.cpp | 6 valr-0.1.2/valr/src/subtract.cpp | 6 valr-0.1.2/valr/src/utils.cpp | 6 valr-0.1.2/valr/tests/testthat/test_absdist.r | 4 valr-0.1.2/valr/tests/testthat/test_closest.r | 309 ++++-------------------- valr-0.1.2/valr/tests/testthat/test_cluster.r | 41 ++- valr-0.1.2/valr/tests/testthat/test_coverage.r | 9 valr-0.1.2/valr/tests/testthat/test_flank.r | 2 valr-0.1.2/valr/tests/testthat/test_glyph.r | 10 valr-0.1.2/valr/tests/testthat/test_intersect.r | 58 ++-- valr-0.1.2/valr/tests/testthat/test_map.r | 4 valr-0.1.2/valr/tests/testthat/test_merge.r | 56 ++-- valr-0.1.2/valr/tests/testthat/test_random.r | 13 - valr-0.1.2/valr/tests/testthat/test_read_bed.r | 4 valr-0.1.2/valr/tests/testthat/test_read_vcf.r | 8 valr-0.1.2/valr/tests/testthat/test_reldist.R | 4 valr-0.1.2/valr/tests/testthat/test_shuffle.r | 33 +- valr-0.1.2/valr/tests/testthat/test_sort.r | 12 valr-0.1.2/valr/vignettes/interval-stats.Rmd | 3 valr-0.1.2/valr/vignettes/valr.Rmd | 50 +-- 99 files changed, 899 insertions(+), 1037 deletions(-)
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Title: Simulate from ODE-Based Population PK/PD and Systems
Pharmacology Models
Description: Facilitates simulation from hierarchical, ordinary
differential equation (ODE) based models typically employed in drug development.
A model specification file is created consisting of R and C++ code that
is parsed, compiled, and dynamically loaded into the R session. Input data are
passed in and simulated data are returned as R objects. A dosing event engine
allows interventions (bolus and infusion) to be managed separately from the
model code. Differential equations are solved with the 'DLSODA' routine
in 'ODEPACK' (<https://computation.llnl.gov/casc/odepack/>).
Author: Kyle T Baron [aut, cre],
Alan C Hindmarsh [ctb],
Linda R Petzold [ctb],
Bill Gillespie [ctb],
Charles Margossian [ctb],
Devin Pastoor [ctb],
Metrum Research Group LLC [cph]
Maintainer: Kyle T Baron <kyleb@metrumrg.com>
Diff between mrgsolve versions 0.8.2 dated 2017-03-12 and 0.8.6 dated 2017-03-16
mrgsolve-0.8.2/mrgsolve/tests/testthat/test-D-R-F.R |only mrgsolve-0.8.2/mrgsolve/tests/testthat/test-alag.R |only mrgsolve-0.8.2/mrgsolve/tests/testthat/test-bioav.R |only mrgsolve-0.8.2/mrgsolve/tests/testthat/test-cache.R |only mrgsolve-0.8.2/mrgsolve/tests/testthat/test-error.R |only mrgsolve-0.8.2/mrgsolve/tests/testthat/test-initials.R |only mrgsolve-0.8.2/mrgsolve/tests/testthat/test-iv-po.R |only mrgsolve-0.8.2/mrgsolve/tests/testthat/test-modlib.R |only mrgsolve-0.8.2/mrgsolve/tests/testthat/test-mread.R |only mrgsolve-0.8.2/mrgsolve/tests/testthat/test-nmxml.R |only mrgsolve-0.8.2/mrgsolve/tests/testthat/test-pkmodel.R |only mrgsolve-0.8.2/mrgsolve/tests/testthat/test-plot.R |only mrgsolve-0.8.2/mrgsolve/tests/testthat/test-plugin.R |only mrgsolve-0.8.2/mrgsolve/tests/testthat/test-request.R |only mrgsolve-0.8.2/mrgsolve/tests/testthat/test-update.R |only mrgsolve-0.8.2/mrgsolve/tests/testthat/test-z-alag-f.R |only mrgsolve-0.8.6/mrgsolve/DESCRIPTION | 6 - mrgsolve-0.8.6/mrgsolve/MD5 | 76 +++++---------- mrgsolve-0.8.6/mrgsolve/R/RcppExports.R | 4 mrgsolve-0.8.6/mrgsolve/R/library.R | 4 mrgsolve-0.8.6/mrgsolve/R/mread.R | 7 - mrgsolve-0.8.6/mrgsolve/R/package.R | 4 mrgsolve-0.8.6/mrgsolve/R/qsim.R | 1 mrgsolve-0.8.6/mrgsolve/R/simtime.R | 5 mrgsolve-0.8.6/mrgsolve/R/update.R | 2 mrgsolve-0.8.6/mrgsolve/inst/base/modelheader.h | 8 - mrgsolve-0.8.6/mrgsolve/inst/base/mrgsolv.h | 7 - mrgsolve-0.8.6/mrgsolve/inst/include/datarecord.h | 7 - mrgsolve-0.8.6/mrgsolve/inst/include/modelheader.h | 8 - mrgsolve-0.8.6/mrgsolve/inst/include/mrgsolv.h | 7 - mrgsolve-0.8.6/mrgsolve/inst/include/odeproblem.h | 20 ++- mrgsolve-0.8.6/mrgsolve/inst/project/housemodel.RDS |binary mrgsolve-0.8.6/mrgsolve/man/mcode.Rd | 3 mrgsolve-0.8.6/mrgsolve/man/mread.Rd | 4 mrgsolve-0.8.6/mrgsolve/man/mrgsolve_package.Rd | 4 mrgsolve-0.8.6/mrgsolve/man/pk_model.Rd | 4 mrgsolve-0.8.6/mrgsolve/man/tgrid.Rd | 3 mrgsolve-0.8.6/mrgsolve/man/update.Rd | 2 mrgsolve-0.8.6/mrgsolve/src/RcppExports.cpp | 18 --- mrgsolve-0.8.6/mrgsolve/src/datarecord.cpp | 4 mrgsolve-0.8.6/mrgsolve/src/odepack_dlsoda.cpp | 4 mrgsolve-0.8.6/mrgsolve/src/odeproblem.cpp | 12 +- mrgsolve-0.8.6/mrgsolve/src/quick.cpp | 59 +++++------ mrgsolve-0.8.6/mrgsolve/tests/testthat/test-fixed-cmtn.R | 8 - mrgsolve-0.8.6/mrgsolve/tests/testthat/test-matlist.R | 18 +-- mrgsolve-0.8.6/mrgsolve/tests/testthat/test-modspec.R | 2 mrgsolve-0.8.6/mrgsolve/tests/testthat/test-opts.R | 2 47 files changed, 142 insertions(+), 171 deletions(-)
Title: Latent Variable Models
Description: Estimation and simulation of latent variable models.
Author: Klaus K. Holst [aut, cre],
Brice Ozenne [ctb],
Thomas Gerds [ctb]
Maintainer: Klaus K. Holst <klaus@holst.it>
Diff between lava versions 1.4.7 dated 2017-01-27 and 1.4.8 dated 2017-03-16
lava-1.4.7/lava/R/weight.R |only lava-1.4.8/lava/DESCRIPTION | 24 - lava-1.4.8/lava/MD5 | 289 +++++++++++----------- lava-1.4.8/lava/NAMESPACE | 9 lava-1.4.8/lava/R/Objective.R | 30 +- lava-1.4.8/lava/R/addhook.R | 2 lava-1.4.8/lava/R/assoc.R | 2 lava-1.4.8/lava/R/bootstrap.R | 8 lava-1.4.8/lava/R/combine.R | 24 + lava-1.4.8/lava/R/compare.R | 4 lava-1.4.8/lava/R/complik.R | 26 + lava-1.4.8/lava/R/confband.R | 15 - lava-1.4.8/lava/R/contr.R | 24 + lava-1.4.8/lava/R/correlation.R | 118 ++++++-- lava-1.4.8/lava/R/diagtest.R | 2 lava-1.4.8/lava/R/distribution.R | 7 lava-1.4.8/lava/R/equivalence.R | 2 lava-1.4.8/lava/R/estimate.default.R | 83 +++--- lava-1.4.8/lava/R/estimate.lvm.R | 315 ++++++++++++++---------- lava-1.4.8/lava/R/estimate.multigroup.R | 179 +++++++------ lava-1.4.8/lava/R/glmest.R | 44 ++- lava-1.4.8/lava/R/gof.R | 16 - lava-1.4.8/lava/R/information.R | 58 ++-- lava-1.4.8/lava/R/latent.R | 5 lava-1.4.8/lava/R/lava-package.R | 5 lava-1.4.8/lava/R/logLik.R | 48 +-- lava-1.4.8/lava/R/missingMLE.R | 51 +-- lava-1.4.8/lava/R/modelsearch.R | 6 lava-1.4.8/lava/R/multigroup.R | 5 lava-1.4.8/lava/R/normal.R | 32 +- lava-1.4.8/lava/R/onload.R | 4 lava-1.4.8/lava/R/ordinal.R | 137 ++++++++++ lava-1.4.8/lava/R/parsedesign.R |only lava-1.4.8/lava/R/plotConf.R | 63 +++- lava-1.4.8/lava/R/revdiag.R | 5 lava-1.4.8/lava/R/score.R | 20 - lava-1.4.8/lava/R/spaghetti.R | 52 ++- lava-1.4.8/lava/R/stack.R | 18 - lava-1.4.8/lava/R/startvalues.R | 2 lava-1.4.8/lava/R/utils.R | 36 -- lava-1.4.8/lava/R/weights.R |only lava-1.4.8/lava/demo/estimation.R | 2 lava-1.4.8/lava/inst/doc/reference.pdf |binary lava-1.4.8/lava/inst/mediation1.png |binary lava-1.4.8/lava/man/By.Rd | 1 lava-1.4.8/lava/man/Col.Rd | 1 lava-1.4.8/lava/man/Combine.Rd | 4 lava-1.4.8/lava/man/Expand.Rd | 1 lava-1.4.8/lava/man/Graph.Rd | 11 lava-1.4.8/lava/man/Missing.Rd | 1 lava-1.4.8/lava/man/Model.Rd | 11 lava-1.4.8/lava/man/PD.Rd | 1 lava-1.4.8/lava/man/Range.lvm.Rd | 1 lava-1.4.8/lava/man/addvar.Rd | 1 lava-1.4.8/lava/man/backdoor.Rd | 1 lava-1.4.8/lava/man/baptize.Rd | 1 lava-1.4.8/lava/man/blockdiag.Rd | 5 lava-1.4.8/lava/man/bmd.Rd | 1 lava-1.4.8/lava/man/bmidata.Rd | 1 lava-1.4.8/lava/man/bootstrap.Rd | 7 lava-1.4.8/lava/man/bootstrap.lvm.Rd | 15 - lava-1.4.8/lava/man/brisa.Rd | 1 lava-1.4.8/lava/man/calcium.Rd | 1 lava-1.4.8/lava/man/cancel.Rd | 1 lava-1.4.8/lava/man/children.Rd | 9 lava-1.4.8/lava/man/click.Rd | 13 lava-1.4.8/lava/man/closed.testing.Rd | 1 lava-1.4.8/lava/man/colorbar.Rd | 1 lava-1.4.8/lava/man/commutation.Rd | 1 lava-1.4.8/lava/man/compare.Rd | 7 lava-1.4.8/lava/man/complik.Rd | 11 lava-1.4.8/lava/man/confband.Rd | 8 lava-1.4.8/lava/man/confint.lvmfit.Rd | 7 lava-1.4.8/lava/man/constrain-set.Rd | 15 - lava-1.4.8/lava/man/contr.Rd | 8 lava-1.4.8/lava/man/correlation.Rd | 1 lava-1.4.8/lava/man/covariance.Rd | 19 - lava-1.4.8/lava/man/density.sim.Rd | 1 lava-1.4.8/lava/man/devcoords.Rd | 1 lava-1.4.8/lava/man/diagtest.Rd | 7 lava-1.4.8/lava/man/dsep.lvm.Rd | 3 lava-1.4.8/lava/man/equivalence.Rd | 7 lava-1.4.8/lava/man/estimate.default.Rd | 15 - lava-1.4.8/lava/man/estimate.lvm.Rd | 30 +- lava-1.4.8/lava/man/eventTime.Rd | 1 lava-1.4.8/lava/man/fplot.Rd | 1 lava-1.4.8/lava/man/getMplus.Rd | 7 lava-1.4.8/lava/man/getSAS.Rd | 7 lava-1.4.8/lava/man/gof.Rd | 23 - lava-1.4.8/lava/man/hubble.Rd | 1 lava-1.4.8/lava/man/hubble2.Rd | 1 lava-1.4.8/lava/man/iid.Rd | 1 lava-1.4.8/lava/man/images.Rd | 1 lava-1.4.8/lava/man/indoorenv.Rd | 1 lava-1.4.8/lava/man/intercept.Rd | 15 - lava-1.4.8/lava/man/internal.Rd | 114 ++++---- lava-1.4.8/lava/man/kill.Rd | 11 lava-1.4.8/lava/man/ksmooth2.Rd | 1 lava-1.4.8/lava/man/labels-set.Rd | 19 - lava-1.4.8/lava/man/lava-package.Rd | 3 lava-1.4.8/lava/man/lava.options.Rd | 1 lava-1.4.8/lava/man/lvm.Rd | 11 lava-1.4.8/lava/man/makemissing.Rd | 1 lava-1.4.8/lava/man/measurement.error.Rd | 1 lava-1.4.8/lava/man/missingdata.Rd | 1 lava-1.4.8/lava/man/modelsearch.Rd | 7 lava-1.4.8/lava/man/multinomial.Rd | 5 lava-1.4.8/lava/man/nldata.Rd | 1 lava-1.4.8/lava/man/nsem.Rd | 1 lava-1.4.8/lava/man/op_concat.Rd | 7 lava-1.4.8/lava/man/op_match.Rd | 7 lava-1.4.8/lava/man/ordreg.Rd | 1 lava-1.4.8/lava/man/org.Rd | 1 lava-1.4.8/lava/man/parpos.Rd | 1 lava-1.4.8/lava/man/partialcor.Rd | 1 lava-1.4.8/lava/man/path.Rd | 15 - lava-1.4.8/lava/man/pcor.Rd | 1 lava-1.4.8/lava/man/pdfconvert.Rd | 7 lava-1.4.8/lava/man/plot.lvm.Rd | 1 lava-1.4.8/lava/man/plotConf.Rd | 23 - lava-1.4.8/lava/man/predict.lvm.Rd | 1 lava-1.4.8/lava/man/predictlvm.Rd | 1 lava-1.4.8/lava/man/regression-set.Rd | 21 - lava-1.4.8/lava/man/revdiag.Rd | 9 lava-1.4.8/lava/man/scheffe.Rd | 1 lava-1.4.8/lava/man/semdata.Rd | 1 lava-1.4.8/lava/man/serotonin.Rd | 1 lava-1.4.8/lava/man/serotonin2.Rd | 1 lava-1.4.8/lava/man/sim.Rd | 77 ++--- lava-1.4.8/lava/man/sim.default.Rd | 1 lava-1.4.8/lava/man/spaghetti.Rd | 25 + lava-1.4.8/lava/man/stack.estimate.Rd | 7 lava-1.4.8/lava/man/subset.lvm.Rd | 3 lava-1.4.8/lava/man/timedep.Rd | 1 lava-1.4.8/lava/man/toformula.Rd | 7 lava-1.4.8/lava/man/tr.Rd | 7 lava-1.4.8/lava/man/trim.Rd | 1 lava-1.4.8/lava/man/twindata.Rd | 1 lava-1.4.8/lava/man/twostage.Rd | 1 lava-1.4.8/lava/man/twostage.lvmfit.Rd | 5 lava-1.4.8/lava/man/vars.Rd | 41 +-- lava-1.4.8/lava/man/vec.Rd | 1 lava-1.4.8/lava/man/wrapvec.Rd | 1 lava-1.4.8/lava/man/zibreg.Rd | 1 lava-1.4.8/lava/tests/testthat/test-constrain.R | 5 lava-1.4.8/lava/tests/testthat/test-inference.R | 42 ++- lava-1.4.8/lava/tests/testthat/test-plot.R | 12 147 files changed, 1442 insertions(+), 1138 deletions(-)
Title: Easily Download and Visualise Climate Data from CliFlo
Description: CliFlo is a web portal to the New Zealand National Climate
Database and provides public access (via subscription) to around 6,500
various climate stations (see <https://cliflo.niwa.co.nz/> for more
information). Collating and manipulating data from CliFlo
(hence clifro) and importing into R for further analysis, exploration and
visualisation is now straightforward and coherent. The user is required to
have an internet connection, and a current CliFlo subscription (free) if
data from stations, other than the public Reefton electronic weather
station, is sought.
Author: Blake Seers [aut, cre]
Maintainer: Blake Seers <blake.seers@gmail.com>
Diff between clifro versions 3.1-2 dated 2017-01-09 and 3.1-3 dated 2017-03-16
clifro-3.1-2/clifro/vignettes/cfStation_cache |only clifro-3.1-3/clifro/DESCRIPTION | 12 +- clifro-3.1-3/clifro/MD5 | 73 ++++++------- clifro-3.1-3/clifro/NEWS.md | 8 + clifro-3.1-3/clifro/README.md | 10 - clifro-3.1-3/clifro/inst/doc/cfStation.R | 38 +++--- clifro-3.1-3/clifro/inst/doc/cfStation.Rmd | 4 clifro-3.1-3/clifro/inst/doc/cfStation.html | 9 + clifro-3.1-3/clifro/inst/doc/choose-datatype.html | 4 clifro-3.1-3/clifro/inst/doc/choose-station.html | 4 clifro-3.1-3/clifro/inst/doc/clifro.html | 4 clifro-3.1-3/clifro/man/Extract.Rd | 14 +- clifro-3.1-3/clifro/man/cfDatatype-class.Rd | 3 clifro-3.1-3/clifro/man/cfStation-class.Rd | 3 clifro-3.1-3/clifro/man/cfUser-class.Rd | 5 clifro-3.1-3/clifro/man/cf_curl_opts.Rd | 1 clifro-3.1-3/clifro/man/cf_find_station.Rd | 1 clifro-3.1-3/clifro/man/cf_last_query.Rd | 1 clifro-3.1-3/clifro/man/cf_query.Rd | 2 clifro-3.1-3/clifro/man/cf_save_kml.Rd | 1 clifro-3.1-3/clifro/man/clifro.Rd | 2 clifro-3.1-3/clifro/man/clifroAdd.Rd | 3 clifro-3.1-3/clifro/man/dim.Rd | 3 clifro-3.1-3/clifro/man/plot-cfEarthTemp-missing-method.Rd | 1 clifro-3.1-3/clifro/man/plot-cfPressure-missing-method.Rd | 1 clifro-3.1-3/clifro/man/plot-cfRain-missing-method.Rd | 1 clifro-3.1-3/clifro/man/plot-cfScreenObs-missing-method.Rd | 1 clifro-3.1-3/clifro/man/plot-cfSunshine-missing-method.Rd | 1 clifro-3.1-3/clifro/man/plot-cfTemp-missing-method.Rd | 1 clifro-3.1-3/clifro/man/plot-cfWind-missing-method.Rd | 10 - clifro-3.1-3/clifro/man/plot.cfDataList.Rd | 5 clifro-3.1-3/clifro/man/summary-cfUser-method.Rd | 1 clifro-3.1-3/clifro/man/summary-cfWind-method.Rd | 1 clifro-3.1-3/clifro/man/valid_cfuser.Rd | 3 clifro-3.1-3/clifro/man/windrose.Rd | 2 clifro-3.1-3/clifro/tools |only clifro-3.1-3/clifro/vignettes/cfStation.Rmd | 4 clifro-3.1-3/clifro/vignettes/figures/ggmap.png |only 38 files changed, 119 insertions(+), 118 deletions(-)
Title: Mining Frequent Sequences
Description: Add-on for arules to handle and mine frequent sequences.
Provides interfaces to the C++ implementation of cSPADE by
Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler, with contributions from
Daniel Diaz
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>
Diff between arulesSequences versions 0.2-17 dated 2017-01-18 and 0.2-18 dated 2017-03-16
arulesSequences-0.2-17/arulesSequences/R/native.R |only arulesSequences-0.2-18/arulesSequences/CHANGELOG | 4 + arulesSequences-0.2-18/arulesSequences/DESCRIPTION | 8 +-- arulesSequences-0.2-18/arulesSequences/MD5 | 7 +- arulesSequences-0.2-18/arulesSequences/src/dll.c | 54 ++++++++++++++------- 5 files changed, 48 insertions(+), 25 deletions(-)
More information about arulesSequences at CRAN
Permanent link
Title: Power and Sample Size Based on Two One-Sided t-Tests (TOST) for
(Bio)Equivalence Studies
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies.
See function known.designs() for study designs covered.
Moreover the package contains functions for power and sample size
based on 'expected' power in case of uncertain (estimated) variability
and/or uncertain theta0.
-----
Added are functions for the power and sample size for the ratio of
two means with normally distributed data on the original scale
(based on Fieller's confidence ('fiducial') interval).
-----
Contains further functions for power and sample size calculations based on
non-inferiority t-test. This is not a TOST procedure but eventually useful
if the question of 'non-superiority' must be evaluated.
The power and sample size calculations based on non-inferiority test may
also performed via 'expected' power in case of uncertain (estimated)
variability and/or uncertain theta0.
-----
Contains functions power.scABEL() and sampleN.scABEL() to calculate power
and sample size for the BE decision via scaled (widened) BE acceptance
limits (EMA recommended) based on simulations.
Contains also functions scABEL.ad() and sampleN.scABEL.ad() to iteratively
adjust alpha in order to maintain the overall consumer risk in ABEL studies
and adapt the sample size for the loss in power.
Contains further functions power.RSABE() and sampleN.RSABE() to calculate
power and sample size for the BE decision via reference scaled ABE criterion
according to the FDA procedure based on simulations.
Contains further functions power.NTIDFDA() and sampleN.NTIDFDA() to calculate
power and sample size for the BE decision via the FDA procedure for NTID's
based on simulations.
Contains further functions power.HVNTID() and sampleN.HVNTID() to calculate
power and sample size for the BE decision via the FDA procedure for
highly variable NTID's (see FDA Dabigatran / rivaroxaban guidances)
-----
Contains functions for power analysis of a sample size plan for ABE
(pa.ABE()), scaled ABE (pa.scABE()) and scaled ABE for NTID's (pa.NTIDFDA())
analysing power if deviating from assumptions of the plan.
-----
Contains further functions for power calculations / sample size estimation
for dose proportionality studies using the Power model.
Author: Detlew Labes [aut, cre],
Helmut Schuetz [aut],
Benjamin Lang [aut]
Maintainer: Detlew Labes <DetlewLabes@gmx.de>
Diff between PowerTOST versions 1.4-3 dated 2016-11-01 and 1.4-4 dated 2017-03-16
PowerTOST-1.4-3/PowerTOST/R/power_scABEL_3.R |only PowerTOST-1.4-4/PowerTOST/DESCRIPTION | 10 PowerTOST-1.4-4/PowerTOST/MD5 | 93 +-- PowerTOST-1.4-4/PowerTOST/NAMESPACE | 9 PowerTOST-1.4-4/PowerTOST/NEWS | 22 PowerTOST-1.4-4/PowerTOST/R/critical_value_nct.R | 46 + PowerTOST-1.4-4/PowerTOST/R/exppower.R | 8 PowerTOST-1.4-4/PowerTOST/R/pa.scABE.R | 40 - PowerTOST-1.4-4/PowerTOST/R/power_scABEL.R | 253 ---------- PowerTOST-1.4-4/PowerTOST/R/power_scABEL1.R |only PowerTOST-1.4-4/PowerTOST/R/power_scABEL2.R | 5 PowerTOST-1.4-4/PowerTOST/R/power_scABEL_0.R |only PowerTOST-1.4-4/PowerTOST/R/power_scABEL_sdsims.R |only PowerTOST-1.4-4/PowerTOST/R/sampleN.scABEL.ad.R | 14 PowerTOST-1.4-4/PowerTOST/R/samplesize_scABEL2.R | 5 PowerTOST-1.4-4/PowerTOST/R/scABEL.ad.R | 5 PowerTOST-1.4-4/PowerTOST/R/simulate_replicate_fixed.R |only PowerTOST-1.4-4/PowerTOST/build/partial.rdb |binary PowerTOST-1.4-4/PowerTOST/inst/doc/BE_power_sample_size_excerpt.pdf |binary PowerTOST-1.4-4/PowerTOST/inst/doc/Expected_Power_for_TOST.pdf |only PowerTOST-1.4-4/PowerTOST/man/OwensQ.Rd | 14 PowerTOST-1.4-4/PowerTOST/man/OwensQOwen.Rd | 7 PowerTOST-1.4-4/PowerTOST/man/OwensT.Rd | 67 +- PowerTOST-1.4-4/PowerTOST/man/exppower.TOST.Rd | 47 - PowerTOST-1.4-4/PowerTOST/man/exppower.noninf.Rd | 60 +- PowerTOST-1.4-4/PowerTOST/man/expsampleN.TOST.Rd | 45 - PowerTOST-1.4-4/PowerTOST/man/expsampleN.noninf.Rd | 56 -- PowerTOST-1.4-4/PowerTOST/man/power.2TOST.Rd | 18 PowerTOST-1.4-4/PowerTOST/man/power.HVNTID.Rd | 12 PowerTOST-1.4-4/PowerTOST/man/power.NTIDFDA.Rd | 31 - PowerTOST-1.4-4/PowerTOST/man/power.RSABE.Rd | 23 PowerTOST-1.4-4/PowerTOST/man/power.RatioF.Rd | 13 PowerTOST-1.4-4/PowerTOST/man/power.TOST.Rd | 14 PowerTOST-1.4-4/PowerTOST/man/power.dp.Rd | 20 PowerTOST-1.4-4/PowerTOST/man/power.noninf.Rd | 8 PowerTOST-1.4-4/PowerTOST/man/power.scABEL.Rd | 7 PowerTOST-1.4-4/PowerTOST/man/power.scABEL.sdsims.Rd |only PowerTOST-1.4-4/PowerTOST/man/pvalue.TOST.Rd | 14 PowerTOST-1.4-4/PowerTOST/man/sampleN.2TOST.Rd | 16 PowerTOST-1.4-4/PowerTOST/man/sampleN.HVNTID.Rd | 14 PowerTOST-1.4-4/PowerTOST/man/sampleN.NTIDFDA.Rd | 22 PowerTOST-1.4-4/PowerTOST/man/sampleN.RSABE.Rd | 30 - PowerTOST-1.4-4/PowerTOST/man/sampleN.RatioF.Rd | 18 PowerTOST-1.4-4/PowerTOST/man/sampleN.TOST.Rd | 26 - PowerTOST-1.4-4/PowerTOST/man/sampleN.dp.Rd | 20 PowerTOST-1.4-4/PowerTOST/man/sampleN.noninf.Rd | 7 PowerTOST-1.4-4/PowerTOST/man/sampleN.scABEL.Rd | 15 PowerTOST-1.4-4/PowerTOST/man/sampleN.scABEL.ad.Rd | 36 - PowerTOST-1.4-4/PowerTOST/man/scABEL.Rd | 7 PowerTOST-1.4-4/PowerTOST/man/scABEL.ad.Rd | 30 - PowerTOST-1.4-4/PowerTOST/man/type1error.2TOST.Rd | 12 51 files changed, 466 insertions(+), 753 deletions(-)
Title: Spatio-Temporal Generalised Linear Mixed Models for Areal Unit
Data
Description: Implements a class of spatio-temporal generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (MCMC) simulation. The response variable can be binomial, Gaussian or Poisson, but for some models only the binomial and Poisson data likelihoods are available. The spatio-temporal autocorrelation is modelled by random effects, which are assigned conditional autoregressive (CAR) style prior distributions. A number of different random effects structures are available, and full details are given in the vignette accompanying this package and the references in the help files. The creation of this package was supported by the Engineering and Physical Sciences Research Council (EPSRC) grant EP/J017442/1 and the Medical Research Council (MRC) grant MR/L022184/1.
Author: Duncan Lee, Alastair Rushworth and Gary Napier
Maintainer: Duncan Lee <Duncan.Lee@glasgow.ac.uk>
Diff between CARBayesST versions 2.4 dated 2016-07-28 and 2.5 dated 2017-03-16
CARBayesST-2.4/CARBayesST/vignettes/figsim.png |only CARBayesST-2.4/CARBayesST/vignettes/figsim2.png |only CARBayesST-2.4/CARBayesST/vignettes/figsim3.png |only CARBayesST-2.4/CARBayesST/vignettes/pollution_scatterplot.png |only CARBayesST-2.5/CARBayesST/DESCRIPTION | 14 CARBayesST-2.5/CARBayesST/MD5 | 115 CARBayesST-2.5/CARBayesST/NAMESPACE | 4 CARBayesST-2.5/CARBayesST/R/RcppExports.R | 104 CARBayesST-2.5/CARBayesST/R/ST.CARadaptive.R | 6 CARBayesST-2.5/CARBayesST/R/ST.CARanova.R | 6 CARBayesST-2.5/CARBayesST/R/ST.CARar.R | 6 CARBayesST-2.5/CARBayesST/R/ST.CARlinear.R | 6 CARBayesST-2.5/CARBayesST/R/ST.CARlocalised.R | 6 CARBayesST-2.5/CARBayesST/R/ST.CARsepspatial.R | 6 CARBayesST-2.5/CARBayesST/R/binomial.CARadaptive.R | 152 CARBayesST-2.5/CARBayesST/R/binomial.CARanova.R | 994 +--- CARBayesST-2.5/CARBayesST/R/binomial.CARar.R | 751 +-- CARBayesST-2.5/CARBayesST/R/binomial.CARlinear.R | 872 +-- CARBayesST-2.5/CARBayesST/R/binomial.CARlocalised.R | 943 +-- CARBayesST-2.5/CARBayesST/R/binomial.CARsepspatial.R | 643 -- CARBayesST-2.5/CARBayesST/R/common.functions.R |only CARBayesST-2.5/CARBayesST/R/gaussian.CARadaptive.R | 71 CARBayesST-2.5/CARBayesST/R/gaussian.CARanova.R | 752 +-- CARBayesST-2.5/CARBayesST/R/gaussian.CARar.R | 652 +- CARBayesST-2.5/CARBayesST/R/gaussian.CARlinear.R | 620 -- CARBayesST-2.5/CARBayesST/R/poisson.CARadaptive.R | 198 CARBayesST-2.5/CARBayesST/R/poisson.CARanova.R | 907 +-- CARBayesST-2.5/CARBayesST/R/poisson.CARar.R | 662 -- CARBayesST-2.5/CARBayesST/R/poisson.CARlinear.R | 863 +-- CARBayesST-2.5/CARBayesST/R/poisson.CARlocalised.R | 942 +-- CARBayesST-2.5/CARBayesST/R/poisson.CARsepspatial.R | 692 -- CARBayesST-2.5/CARBayesST/R/residuals.CARBayesST.R | 3 CARBayesST-2.5/CARBayesST/build/vignette.rds |binary CARBayesST-2.5/CARBayesST/inst/doc/CARBayesST.R | 109 CARBayesST-2.5/CARBayesST/inst/doc/CARBayesST.Rnw | 437 + CARBayesST-2.5/CARBayesST/inst/doc/CARBayesST.pdf |binary CARBayesST-2.5/CARBayesST/man/CARBayesST-package.Rd | 32 CARBayesST-2.5/CARBayesST/man/ST.CARadaptive.Rd | 38 CARBayesST-2.5/CARBayesST/man/ST.CARanova.Rd | 37 CARBayesST-2.5/CARBayesST/man/ST.CARar.Rd | 101 CARBayesST-2.5/CARBayesST/man/ST.CARlinear.Rd | 35 CARBayesST-2.5/CARBayesST/man/ST.CARlocalised.Rd | 32 CARBayesST-2.5/CARBayesST/man/ST.CARsepspatial.Rd | 61 CARBayesST-2.5/CARBayesST/man/coef.CARBayesST.Rd | 2 CARBayesST-2.5/CARBayesST/man/logLik.CARBayesST.Rd | 3 CARBayesST-2.5/CARBayesST/man/residuals.CARBayesST.Rd | 6 CARBayesST-2.5/CARBayesST/src/CARBayesST.cpp | 2371 +++++++--- CARBayesST-2.5/CARBayesST/src/RcppExports.cpp | 437 + CARBayesST-2.5/CARBayesST/src/registerDynamicSymbol.c |only CARBayesST-2.5/CARBayesST/tests |only CARBayesST-2.5/CARBayesST/vignettes/CARBayesST.Rnw | 437 + CARBayesST-2.5/CARBayesST/vignettes/CARBayesST.bib | 61 CARBayesST-2.5/CARBayesST/vignettes/Chicago.bst |only CARBayesST-2.5/CARBayesST/vignettes/SMRmap.png |binary CARBayesST-2.5/CARBayesST/vignettes/figsim1.png |only CARBayesST-2.5/CARBayesST/vignettes/jss.dtx |only CARBayesST-2.5/CARBayesST/vignettes/jsslogo.jpg |only CARBayesST-2.5/CARBayesST/vignettes/pollution_mcmc.png |binary CARBayesST-2.5/CARBayesST/vignettes/pollutionscatterplot.png |only CARBayesST-2.5/CARBayesST/vignettes/salesboxplot.png |binary CARBayesST-2.5/CARBayesST/vignettes/salesmap.png |binary CARBayesST-2.5/CARBayesST/vignettes/salesmapest.png |binary CARBayesST-2.5/CARBayesST/vignettes/salestrend.png |binary 63 files changed, 7178 insertions(+), 8011 deletions(-)
Title: Drawing Survival Curves using 'ggplot2'
Description: Contains the function 'ggsurvplot()' for drawing easily beautiful
and 'ready-to-publish' survival curves with the 'number at risk' table
and 'censoring count plot'. Other functions are also available to plot
adjusted curves for `Cox` model and to visually examine 'Cox' model assumptions.
Author: Alboukadel Kassambara [aut, cre],
Marcin Kosinski [aut],
Przemyslaw Biecek [ctb]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between survminer versions 0.2.4 dated 2016-12-11 and 0.3.0 dated 2017-03-16
DESCRIPTION | 41 MD5 | 84 - NAMESPACE | 25 NEWS.md | 167 ++ R/add_ggsurvplot.R |only R/arrange_ggsurvplots.R |only R/ggcompetingrisks.R |only R/ggcoxadjustedcurves.R |only R/ggcoxdiagnostics.R | 71 - R/ggcoxfunctional.R | 54 R/ggcoxzph.R | 58 R/ggcumcensor.R |only R/ggcumevents.R |only R/ggforest.R |only R/ggrisktable.R |only R/ggsurvevents.R |only R/ggsurvplot.R | 888 ++++++++------ R/ggsurvtheme.R |only R/pairwise_survdiff.R |only R/surv_cutpoint.R | 10 R/surv_summary.R | 70 - R/utilities.R | 343 ++--- README.md | 205 ++- build/vignette.rds |binary inst/doc/Informative_Survival_Plots.R | 3 inst/doc/Informative_Survival_Plots.Rmd | 5 inst/doc/Informative_Survival_Plots.html | 21 inst/doc/Playing_with_fonts_and_texts.R |only inst/doc/Playing_with_fonts_and_texts.Rmd |only inst/doc/Playing_with_fonts_and_texts.html |only inst/doc/Specifiying_weights_in_log-rank_comparisons.R |only inst/doc/Specifiying_weights_in_log-rank_comparisons.Rmd |only inst/doc/Specifiying_weights_in_log-rank_comparisons.html |only man/add_ggsurvplot.Rd |only man/arrange_ggsurvplots.Rd |only man/ggcompetingrisks.Rd |only man/ggcoxadjustedcurves.Rd |only man/ggcoxdiagnostics.Rd | 48 man/ggcoxfunctional.Rd | 40 man/ggcoxzph.Rd | 35 man/ggcumcensor.Rd |only man/ggcumevents.Rd |only man/ggforest.Rd |only man/ggrisktable.Rd |only man/ggsurvevents.Rd |only man/ggsurvplot.Rd | 297 ++-- man/ggsurvtheme.Rd |only man/myeloma.Rd | 1 man/pairwise_survdiff.Rd |only man/surv_cutpoint.Rd | 16 man/surv_summary.Rd | 13 man/theme_classic2.Rd | 1 tools |only vignettes/Informative_Survival_Plots.Rmd | 5 vignettes/Playing_with_fonts_and_texts.Rmd |only vignettes/Specifiying_weights_in_log-rank_comparisons.Rmd |only 56 files changed, 1530 insertions(+), 971 deletions(-)
Title: Tools for Making and Spoiling Sudoku Games
Description: Tools for making, retrieving, displaying and solving sudoku games.
This package is an alternative to the earlier sudoku-solver package,
'sudoku'. The present package uses a slightly different algorithm, has a
simpler coding and presents a few more sugar tools, such as plot and print
methods. Solved sudoku games are of some interest in Experimental Design
as examples of Latin Square designs with additional balance constraints.
Author: Bill Venables <Bill.Venables@gmail.com>
Maintainer: Bill Venables <Bill.Venables@gmail.com>
Diff between sudokuAlt versions 0.1-9 dated 2016-12-05 and 0.1-10 dated 2017-03-16
DESCRIPTION | 10 MD5 | 33 - NAMESPACE | 1 R/sudokuAlt.R | 870 ++++++++++++++++++++++++------------------------ man/as.sudoku.Rd | 1 man/as.sudoku.matrix.Rd | 1 man/as.sudoku.sudoku.Rd | 1 man/daysAgo.Rd | 1 man/emptyGame.Rd |only man/fetchAUGame.Rd | 71 +-- man/fetchUKGame.Rd | 1 man/makeGame.Rd | 1 man/originalGame.Rd | 1 man/plot.sudoku.Rd | 1 man/print.sudoku.Rd | 1 man/seedGame.Rd | 1 man/solve.sudoku.Rd | 5 man/solveGame.Rd | 5 18 files changed, 515 insertions(+), 490 deletions(-)
Title: Perceptual Analysis, Visualization and Organization of Spectral
Color Data in R
Description: A cohesive framework for parsing, analyzing and organizing color from spectral data.
Author: Rafael Maia [aut, cre],
Chad Eliason [aut],
Pierre-Paul Bitton [aut],
Thomas White [aut]
Maintainer: Rafael Maia <rm72@zips.uakron.edu>
Diff between pavo versions 1.0.0 dated 2016-12-05 and 1.0.1 dated 2017-03-16
DESCRIPTION | 10 +- MD5 | 153 +++++++++++++++++----------------- NEWS | 15 +++ R/aggplot.R | 20 +++- R/aggspec.R | 2 R/as.rspec.r | 173 ++++++++++++++++++++++----------------- R/categorical.R | 18 +--- R/explorespec.R | 4 R/getspec.R | 11 +- R/getspecf.R | 1 R/getspecf2.R |only R/plotsmooth.R | 5 + R/segclass.R | 2 R/sensmodel.R | 22 +++- R/spec2rgb.R | 2 R/subset.rspec.R | 4 R/summary.rspec.R | 7 - R/triplot.R | 4 R/vismodel.R | 31 ++++-- R/voloverlap.R | 8 + build/vignette.rds |binary inst/doc/pavo-1_0.html | 6 - inst/doc/pavo.html | 52 +++++------ man/aggplot.Rd | 9 -- man/aggspec.Rd | 7 - man/as.rspec.Rd | 3 man/axistetra.Rd | 1 man/bgandilum.Rd | 7 - man/categorical.Rd | 7 - man/catplot.Rd | 7 - man/cie.Rd | 7 - man/cieplot.Rd | 7 - man/coc.Rd | 7 - man/cocplot.Rd | 7 - man/coldist.Rd | 8 - man/colspace.Rd | 9 -- man/diplot.Rd | 7 - man/dispace.Rd | 7 - man/explorespec.Rd | 1 man/flowers.Rd | 1 man/getspec.Rd | 7 - man/getspecf.Rd | 7 - man/getspecf2.Rd |only man/hexagon.Rd | 7 - man/hexplot.Rd | 7 - man/irrad2flux.Rd | 3 man/legendtetra.Rd | 1 man/merge.rspec.Rd | 7 - man/pavo-deprecated.Rd | 2 man/pavo-package.Rd | 3 man/peakshape.Rd | 7 - man/plot.colspace.Rd | 9 -- man/plot.rspec.Rd | 7 - man/plotsmooth.Rd | 1 man/points.colspace.Rd | 1 man/procspec.Rd | 7 - man/projplot.Rd | 7 - man/segclass.Rd | 7 - man/sensmodel.Rd | 11 +- man/sicalis.Rd | 1 man/spec2rgb.Rd | 7 - man/subset.rspec.Rd | 3 man/summary.colspace.Rd | 7 - man/summary.rspec.Rd | 7 - man/summary.vismodel.Rd | 7 - man/tcspace.Rd | 7 - man/tcsplot.Rd | 7 - man/teal.Rd | 1 man/tetraplot.Rd | 11 +- man/transmissiondata.Rd | 7 - man/triplot.Rd | 7 - man/trispace.Rd | 7 - man/ttvertex.Rd | 7 - man/vismodel.Rd | 12 +- man/vissyst.Rd | 7 - man/vol.Rd | 1 man/voloverlap.Rd | 7 - tests/testthat/test-processing.R |only tests/testthat/test-vismodel.R | 2 79 files changed, 452 insertions(+), 416 deletions(-)
Title: Multivariate Normal Mixture Models and Mixtures of Generalized
Linear Mixed Models Including Model Based Clustering
Description: Contains a mixture of statistical methods including the MCMC methods to analyze normal mixtures. Additionally, model based clustering methods are implemented to perform classification based on (multivariate) longitudinal (or otherwise correlated) data. The basis for such clustering is a mixture of multivariate generalized linear mixed models.
Author: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Maintainer: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Diff between mixAK versions 4.4 dated 2016-10-11 and 5.0 dated 2017-03-16
DESCRIPTION | 8 - MD5 | 155 ++++++++++++++++++------------------- NAMESPACE | 2 NEWS | 3 R/BLA.R | 3 R/GLMM_MCMC.R | 3 R/GLMM_MCMCwrapper.R | 3 R/GLMM_longitDA.R | 3 R/GLMM_longitDA2.R | 3 R/MatMPpinv.R | 3 R/MatSqrt.R | 3 R/NMixChainsDerived.R | 5 - R/NMixMCMC.R | 5 - R/NMixMCMCwrapper.R | 3 R/NMixPredCDFMarg.default.R | 3 R/NMixPredCondCDFMarg.default.R | 3 R/NMixPredCondDensJoint2.default.R | 3 R/NMixPredCondDensMarg.default.R | 3 R/NMixPredDA.R | 3 R/NMixPredDensJoint2.default.R | 3 R/NMixPredDensMarg.default.R | 3 R/NMixRelabel.GLMM_MCMC.R | 3 R/NMixRelabel.NMixMCMC.R | 3 R/dMVN.R | 3 R/dMVNmixture.R | 3 R/dMVNmixture2.R | 5 - R/dMVT.R | 3 R/dWISHART.R | 3 R/generatePermutations.R | 3 R/rDirichlet.R | 3 R/rMVN.R | 3 R/rMVNmixture.R | 4 R/rMVNmixture2.R | 5 - R/rMVT.R | 3 R/rRotationMatrix.R | 3 R/rSamplePair.R | 3 R/rTMVN.R | 3 R/rTNorm.R | 3 R/rWISHART.R | 3 R/rcMVN.R | 3 data/Acidity.rda |binary data/Enzyme.rda |binary data/Galaxy.rda |binary inst/doc/Faithful.R | 4 man/BLA.Rd | 1 man/Dirichlet.Rd | 1 man/GLMMMCMC.Rd | 2 man/GLMMlongitDA.Rd | 1 man/GLMMlongitDA2.Rd | 1 man/MVN.Rd | 3 man/MVNmixture.Rd | 4 man/MVT.Rd | 3 man/MatMPpinv.Rd | 1 man/MatSqrt.Rd | 1 man/NMixChainsDerived.Rd | 1 man/NMixMCMC.Rd | 2 man/NMixPredCDFMarg.Rd | 1 man/NMixPredCondDensJoint2.Rd | 1 man/NMixPredCondDensMarg.Rd | 1 man/NMixPredDA.Rd | 1 man/NMixPredDensJoint2.Rd | 1 man/NMixPredDensMarg.Rd | 1 man/NMixRelabel.Rd | 2 man/TMVN.Rd | 1 man/TNorm.Rd | 1 man/Wishart.Rd | 2 man/generatePermutations.Rd | 1 man/rRotationMatrix.Rd | 1 man/rSamplePair.Rd | 1 src/00mixAK_init.cpp |only src/Dist_MVT.cpp | 7 - src/Dist_MVT.h | 8 - src/GLMM_Deviance2.cpp | 12 +- src/GLMM_Deviance2.h | 16 --- src/NMix_Pr_y_and_cum_Pr_y.cpp | 12 +- src/NMix_Pr_y_and_cum_Pr_y.h | 12 +- src/NMix_RJMCMC_logJac_part3.h | 1 src/NMix_Stephens_costMatrix.cpp | 12 +- src/NMix_Stephens_costMatrix.h | 12 +- 79 files changed, 242 insertions(+), 175 deletions(-)
Title: Geographically-Weighted Models
Description: In GWmodel, we introduce techniques from a particular branch of spatial statistics,termed geographically-weighted (GW) models. GW models suit situations when data are not described well by some global model, but where there are spatial regions where a suitably localised calibration provides a better description. GWmodel includes functions to calibrate: GW summary statistics, GW principal components analysis, GW discriminant analysis and various forms of GW regression; some of which are provided in basic and robust (outlier resistant) forms.
Author: Binbin Lu[aut], Paul Harris[aut], Martin Charlton[aut], Chris Brunsdon[aut], Tomoki Nakaya[aut], Isabella Gollini[ctb]
Maintainer: Binbin Lu <binbinlu@whu.edu.cn>
Diff between GWmodel versions 2.0-1 dated 2016-11-30 and 2.0-2 dated 2017-03-16
DESCRIPTION | 8 +-- MD5 | 11 ++-- NAMESPACE | 3 - R/RcppExports.R | 2 R/gw.weight.r | 135 +++++++++++++++++++++++++++++++++++++++++++++----------- R/zzz.r | 2 src/init.c |only 7 files changed, 123 insertions(+), 38 deletions(-)
Title: Tools for Eurostat Open Data
Description: Tools to download data from the Eurostat database
<http://ec.europa.eu/eurostat> together with search and
manipulation utilities.
Author: Leo Lahti [aut, cre],
Przemyslaw Biecek [aut],
Markus Kainu [aut],
Janne Huovari [aut],
Joona Lehtomaki [ctb],
Francois Briatte [ctb],
Oliver Reiter [ctb]
Maintainer: Leo Lahti <leo.lahti@iki.fi>
Diff between eurostat versions 2.2.43 dated 2017-02-21 and 3.1.1 dated 2017-03-16
eurostat-2.2.43/eurostat/vignettes/2015-RJournal |only eurostat-3.1.1/eurostat/DESCRIPTION | 28 - eurostat-3.1.1/eurostat/MD5 | 145 ++++--- eurostat-3.1.1/eurostat/R/clean_eurostat_cache.R | 1 eurostat-3.1.1/eurostat/R/dic_order.R | 1 eurostat-3.1.1/eurostat/R/eurostat-package.R | 6 eurostat-3.1.1/eurostat/R/eurostat_url.R | 2 eurostat-3.1.1/eurostat/R/eurotime2date.R | 2 eurostat-3.1.1/eurostat/R/eurotime2num.R | 3 eurostat-3.1.1/eurostat/R/get_eurostat.R | 1 eurostat-3.1.1/eurostat/R/get_eurostat_json.R | 1 eurostat-3.1.1/eurostat/README.md | 66 +-- eurostat-3.1.1/eurostat/build/vignette.rds |binary eurostat-3.1.1/eurostat/inst/CITATION | 13 eurostat-3.1.1/eurostat/inst/doc/blogposts.Rmd |only eurostat-3.1.1/eurostat/inst/doc/blogposts.html |only eurostat-3.1.1/eurostat/inst/doc/cheatsheet.Rmd |only eurostat-3.1.1/eurostat/inst/doc/cheatsheet.html |only eurostat-3.1.1/eurostat/inst/doc/eurostat_tutorial.R | 72 +++ eurostat-3.1.1/eurostat/inst/doc/eurostat_tutorial.Rmd | 103 +++-- eurostat-3.1.1/eurostat/inst/doc/eurostat_tutorial.pdf |binary eurostat-3.1.1/eurostat/inst/doc/publications.Rmd |only eurostat-3.1.1/eurostat/inst/doc/publications.html |only eurostat-3.1.1/eurostat/man/clean_eurostat_cache.Rd | 4 eurostat-3.1.1/eurostat/man/convert_time_col.Rd | 1 eurostat-3.1.1/eurostat/man/cut_to_classes.Rd | 1 eurostat-3.1.1/eurostat/man/dic_order.Rd | 4 eurostat-3.1.1/eurostat/man/eu_countries.Rd | 3 eurostat-3.1.1/eurostat/man/eurostat-package.Rd | 13 eurostat-3.1.1/eurostat/man/eurostat_url.Rd | 7 eurostat-3.1.1/eurostat/man/eurotime2date.Rd | 3 eurostat-3.1.1/eurostat/man/eurotime2num.Rd | 4 eurostat-3.1.1/eurostat/man/get_eurostat.Rd | 4 eurostat-3.1.1/eurostat/man/get_eurostat_dic.Rd | 7 eurostat-3.1.1/eurostat/man/get_eurostat_geospatial.Rd | 1 eurostat-3.1.1/eurostat/man/get_eurostat_json.Rd | 4 eurostat-3.1.1/eurostat/man/get_eurostat_raw.Rd | 7 eurostat-3.1.1/eurostat/man/get_eurostat_toc.Rd | 7 eurostat-3.1.1/eurostat/man/harmonize_country_code.Rd | 1 eurostat-3.1.1/eurostat/man/label_eurostat.Rd | 4 eurostat-3.1.1/eurostat/man/merge_eurostat_geodata.Rd | 1 eurostat-3.1.1/eurostat/man/search_eurostat.Rd | 10 eurostat-3.1.1/eurostat/man/set_eurostat_toc.Rd | 7 eurostat-3.1.1/eurostat/man/tidy_eurostat.Rd | 7 eurostat-3.1.1/eurostat/tests/testthat/test-all.R | 9 eurostat-3.1.1/eurostat/vignettes/2017_RJournal_manuscript |only eurostat-3.1.1/eurostat/vignettes/blogposts.Rmd |only eurostat-3.1.1/eurostat/vignettes/cheatsheet |only eurostat-3.1.1/eurostat/vignettes/cheatsheet.Rmd |only eurostat-3.1.1/eurostat/vignettes/eurostat_tutorial.Rmd | 103 +++-- eurostat-3.1.1/eurostat/vignettes/eurostat_tutorial.html | 263 +++++++++---- eurostat-3.1.1/eurostat/vignettes/eurostat_tutorial.md | 246 ++++++++---- eurostat-3.1.1/eurostat/vignettes/fig/maps1-1.pdf |binary eurostat-3.1.1/eurostat/vignettes/fig/maps1-1.png |binary eurostat-3.1.1/eurostat/vignettes/fig/maps2-1.pdf |binary eurostat-3.1.1/eurostat/vignettes/fig/maps2-1.png |binary eurostat-3.1.1/eurostat/vignettes/fig/maps3-1.png |binary eurostat-3.1.1/eurostat/vignettes/fig/plotGallery-1.pdf |binary eurostat-3.1.1/eurostat/vignettes/fig/plotGallery-1.png |binary eurostat-3.1.1/eurostat/vignettes/fig/trains_plot-1.pdf |binary eurostat-3.1.1/eurostat/vignettes/fig/trains_plot-1.png |binary eurostat-3.1.1/eurostat/vignettes/publications.Rmd |only eurostat-3.1.1/eurostat/vignettes/tmp.R |only 63 files changed, 775 insertions(+), 390 deletions(-)
Title: Translate Integers into English
Description: Allow numbers to be presented in an English language
version, one, two, three, ...
Author: John Fox, Bill Venables and Anthony Damico
Maintainer: Bill Venables <Bill.Venables@gmail.com>
Diff between english versions 1.1-1 dated 2017-01-31 and 1.1-2 dated 2017-03-16
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 1 + R/english.R | 4 ++++ man/as.english.Rd | 6 ++++-- man/english-package.Rd | 4 ++-- 6 files changed, 20 insertions(+), 13 deletions(-)