Title: Read and Write BAM (Binary Alignment) Files
Description: Provides an interface to functions of the 'SAMtools' C-Library by Heng Li.
Author: Wolfgang Kaisers
Maintainer: Wolfgang Kaisers <kaisers@med.uni-duesseldorf.de>
Diff between rbamtools versions 2.16.4 dated 2017-03-20 and 2.16.5 dated 2017-03-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/rbamtools.pdf |binary src/gap_list.h | 4 ++-- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Read Spectral and Logged Data from Foreign Files
Description: Functions for reading, and in some cases writing, foreign files
containing spectral data from spectrometers and their associated software,
output from daylight simulation models in common use, and some spectral
data repositories. As well as functions for exchange of spectral data with
other R packages.
Author: Pedro J. Aphalo [aut, cre],
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.12 dated 2016-10-22 and 0.4.13 dated 2017-03-20
photobiologyInOut-0.4.12/photobiologyInOut/tests/testthat/data-test |only photobiologyInOut-0.4.12/photobiologyInOut/vignettes/data-vignettes |only photobiologyInOut-0.4.13/photobiologyInOut/DESCRIPTION | 40 photobiologyInOut-0.4.13/photobiologyInOut/MD5 | 150 photobiologyInOut-0.4.13/photobiologyInOut/NAMESPACE | 2 photobiologyInOut-0.4.13/photobiologyInOut/NEWS | 11 photobiologyInOut-0.4.13/photobiologyInOut/R/photobiologyInOut.r | 3 photobiologyInOut-0.4.13/photobiologyInOut/R/read-aster-file.r |only photobiologyInOut-0.4.13/photobiologyInOut/R/read-avaspec-csv.r | 10 photobiologyInOut-0.4.13/photobiologyInOut/R/read-csi-dat.r | 2 photobiologyInOut-0.4.13/photobiologyInOut/R/read-fmi-cum.R | 8 photobiologyInOut-0.4.13/photobiologyInOut/R/read-fred-csv.r |only photobiologyInOut-0.4.13/photobiologyInOut/R/read-libradtran.r | 16 photobiologyInOut-0.4.13/photobiologyInOut/R/read-licor-prn.r | 55 photobiologyInOut-0.4.13/photobiologyInOut/R/read-macam-dta.r | 8 photobiologyInOut-0.4.13/photobiologyInOut/R/read-oojaz-file.r | 16 photobiologyInOut-0.4.13/photobiologyInOut/R/read-oopi-file.r | 8 photobiologyInOut-0.4.13/photobiologyInOut/R/read-ooss-file.r | 16 photobiologyInOut-0.4.13/photobiologyInOut/R/read-tuv-file.r | 8 photobiologyInOut-0.4.13/photobiologyInOut/build/vignette.rds |binary photobiologyInOut-0.4.13/photobiologyInOut/inst/doc/user-guide.R | 153 photobiologyInOut-0.4.13/photobiologyInOut/inst/doc/user-guide.Rnw | 266 photobiologyInOut-0.4.13/photobiologyInOut/inst/doc/user-guide.pdf | 7692 +++++----- photobiologyInOut-0.4.13/photobiologyInOut/inst/extdata |only photobiologyInOut-0.4.13/photobiologyInOut/man/colorSpec2mspct.Rd | 6 photobiologyInOut-0.4.13/photobiologyInOut/man/hyperSpec2mspct.Rd | 2 photobiologyInOut-0.4.13/photobiologyInOut/man/mat2mspct.Rd | 1 photobiologyInOut-0.4.13/photobiologyInOut/man/photobiologyInOut-package.Rd | 29 photobiologyInOut-0.4.13/photobiologyInOut/man/read_ASTER_txt.Rd |only photobiologyInOut-0.4.13/photobiologyInOut/man/read_FReD_csv.Rd |only photobiologyInOut-0.4.13/photobiologyInOut/man/read_avaspec_csv.Rd | 1 photobiologyInOut-0.4.13/photobiologyInOut/man/read_csi_dat.Rd | 1 photobiologyInOut-0.4.13/photobiologyInOut/man/read_fmi_cum.Rd | 1 photobiologyInOut-0.4.13/photobiologyInOut/man/read_licor_prn.Rd | 9 photobiologyInOut-0.4.13/photobiologyInOut/man/read_macam_dta.Rd | 1 photobiologyInOut-0.4.13/photobiologyInOut/man/read_oo_jazirrad.Rd | 3 photobiologyInOut-0.4.13/photobiologyInOut/man/read_oo_pidata.Rd | 1 photobiologyInOut-0.4.13/photobiologyInOut/man/read_oo_ssirrad.Rd | 3 photobiologyInOut-0.4.13/photobiologyInOut/man/read_tuv_usrout.Rd | 1 photobiologyInOut-0.4.13/photobiologyInOut/man/read_uvspec_disort.Rd | 1 photobiologyInOut-0.4.13/photobiologyInOut/man/read_uvspec_disort_vesa.Rd | 1 photobiologyInOut-0.4.13/photobiologyInOut/man/rspec2mspct.Rd | 2 photobiologyInOut-0.4.13/photobiologyInOut/tests/testthat/test-aster.R |only photobiologyInOut-0.4.13/photobiologyInOut/tests/testthat/test-avantes.R | 5 photobiologyInOut-0.4.13/photobiologyInOut/tests/testthat/test-fmi.R | 19 photobiologyInOut-0.4.13/photobiologyInOut/tests/testthat/test-fred.R |only photobiologyInOut-0.4.13/photobiologyInOut/tests/testthat/test-licor.R | 70 photobiologyInOut-0.4.13/photobiologyInOut/tests/testthat/test-macam.R | 5 photobiologyInOut-0.4.13/photobiologyInOut/tests/testthat/test-oo.R | 102 photobiologyInOut-0.4.13/photobiologyInOut/vignettes/user-guide-concordance.tex | 24 photobiologyInOut-0.4.13/photobiologyInOut/vignettes/user-guide.Rnw | 266 51 files changed, 5237 insertions(+), 3781 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use in
photobiology and radiation meteorology and climatology. Calculation of
effective (weighted) and not-weighted irradiances/doses, fluence rates,
transmittance, reflectance, absorptance, absorbance and diverse
ratios and other derived quantities from spectral data. Local maxima and
minima. Conversion between energy- and photon-based units. Wavelength
interpolation. Astronomical calculations related solar angles and day
length. Colours and vision.
Author: Pedro J. Aphalo [aut, cre],
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiology versions 0.9.13 dated 2016-12-18 and 0.9.14 dated 2017-03-20
photobiology-0.9.13/photobiology/R/as.energy.r |only photobiology-0.9.13/photobiology/R/as.quantum.mol.r |only photobiology-0.9.13/photobiology/R/as.quantum.r |only photobiology-0.9.13/photobiology/R/auto.hinges.r |only photobiology-0.9.13/photobiology/R/beesxyz.data.r |only photobiology-0.9.13/photobiology/R/calc.multipliers.r |only photobiology-0.9.13/photobiology/R/calc.source.output.r |only photobiology-0.9.13/photobiology/R/check.spectrum.r |only photobiology-0.9.13/photobiology/R/cieillum.data.r |only photobiology-0.9.13/photobiology/R/ciexyz.data.r |only photobiology-0.9.13/photobiology/R/d2.fel.data.r |only photobiology-0.9.13/photobiology/R/d2.spectrum.r |only photobiology-0.9.13/photobiology/R/div.spectra.r |only photobiology-0.9.13/photobiology/R/e2qmol.multipliers.r |only photobiology-0.9.13/photobiology/R/e2quantum.multipliers.r |only photobiology-0.9.13/photobiology/R/energy.irradiance.r |only photobiology-0.9.13/photobiology/R/energy.ratio.r |only photobiology-0.9.13/photobiology/R/fel.spectrum.r |only photobiology-0.9.13/photobiology/R/filter.data.r |only photobiology-0.9.13/photobiology/R/insert.hinges.r |only photobiology-0.9.13/photobiology/R/integrate.xy.r |only photobiology-0.9.13/photobiology/R/interpolate.spectrum.r |only photobiology-0.9.13/photobiology/R/irradiance.r |only photobiology-0.9.13/photobiology/R/meeus.r |only photobiology-0.9.13/photobiology/R/normalize.range.arg.r |only photobiology-0.9.13/photobiology/R/normalized.diff.idx.r |only photobiology-0.9.13/photobiology/R/oper.spectra.r |only photobiology-0.9.13/photobiology/R/photobiology.r |only photobiology-0.9.13/photobiology/R/photon.irradiance.r |only photobiology-0.9.13/photobiology/R/photon.ratio.r |only photobiology-0.9.13/photobiology/R/photons.energy.ratio.r |only photobiology-0.9.13/photobiology/R/print.waveband.r |only photobiology-0.9.13/photobiology/R/prod.spectra.r |only photobiology-0.9.13/photobiology/R/raw.data.r |only photobiology-0.9.13/photobiology/R/response.data.r |only photobiology-0.9.13/photobiology/R/s.e.irrad2rgb.r |only photobiology-0.9.13/photobiology/R/spct.clean.r |only photobiology-0.9.13/photobiology/R/spct.fscale.r |only photobiology-0.9.13/photobiology/R/spct.fshift.r |only photobiology-0.9.13/photobiology/R/spct.insert.spct.hinges.r |only photobiology-0.9.13/photobiology/R/spct.integrate.r |only photobiology-0.9.13/photobiology/R/spct.irrad.r |only photobiology-0.9.13/photobiology/R/spct.new.r |only photobiology-0.9.13/photobiology/R/spct.normalize.r |only photobiology-0.9.13/photobiology/R/spct.operators.r |only photobiology-0.9.13/photobiology/R/spct.peaks.r |only photobiology-0.9.13/photobiology/R/spct.reflectance.r |only photobiology-0.9.13/photobiology/R/spct.rgb.spct.r |only photobiology-0.9.13/photobiology/R/spct.smooth.spct.r |only photobiology-0.9.13/photobiology/R/spct.summaries.r |only photobiology-0.9.13/photobiology/R/spct.tag.r |only photobiology-0.9.13/photobiology/R/spct.transmittance.r |only photobiology-0.9.13/photobiology/R/spct.trim.r |only photobiology-0.9.13/photobiology/R/spct.upgrade.r |only photobiology-0.9.13/photobiology/R/split.energy.irradiance.r |only photobiology-0.9.13/photobiology/R/split.irradiance.r |only photobiology-0.9.13/photobiology/R/split.photon.irradiance.r |only photobiology-0.9.13/photobiology/R/subt.spectra.r |only photobiology-0.9.13/photobiology/R/sum.spectra.r |only photobiology-0.9.13/photobiology/R/sun.data.r |only photobiology-0.9.13/photobiology/R/trim.tails.r |only photobiology-0.9.13/photobiology/R/trim.waveband.r |only photobiology-0.9.13/photobiology/R/w.length.range2rgb.r |only photobiology-0.9.13/photobiology/R/w.length2rgb.r |only photobiology-0.9.13/photobiology/R/waveband.class.r |only photobiology-0.9.13/photobiology/R/waveband.new.r |only photobiology-0.9.13/photobiology/R/waveband.ratio.r |only photobiology-0.9.14/photobiology/DESCRIPTION | 16 photobiology-0.9.14/photobiology/MD5 | 686 +++++----- photobiology-0.9.14/photobiology/NAMESPACE | 4 photobiology-0.9.14/photobiology/NEWS | 17 photobiology-0.9.14/photobiology/R/as.energy.R |only photobiology-0.9.14/photobiology/R/as.quantum.R |only photobiology-0.9.14/photobiology/R/as.quantum.mol.R |only photobiology-0.9.14/photobiology/R/auto.hinges.R |only photobiology-0.9.14/photobiology/R/beesxyz.data.R |only photobiology-0.9.14/photobiology/R/calc.multipliers.R |only photobiology-0.9.14/photobiology/R/calc.source.output.R |only photobiology-0.9.14/photobiology/R/check.spectrum.R |only photobiology-0.9.14/photobiology/R/cieillum.data.R |only photobiology-0.9.14/photobiology/R/ciexyz.data.R |only photobiology-0.9.14/photobiology/R/copy.attr.R | 8 photobiology-0.9.14/photobiology/R/d2.fel.data.R |only photobiology-0.9.14/photobiology/R/d2.spectrum.R |only photobiology-0.9.14/photobiology/R/div.spectra.R |only photobiology-0.9.14/photobiology/R/e2qmol.multipliers.R |only photobiology-0.9.14/photobiology/R/e2quantum.multipliers.R |only photobiology-0.9.14/photobiology/R/energy.irradiance.R |only photobiology-0.9.14/photobiology/R/energy.ratio.R |only photobiology-0.9.14/photobiology/R/fel.spectrum.R |only photobiology-0.9.14/photobiology/R/filter.data.R |only photobiology-0.9.14/photobiology/R/insert.hinges.R |only photobiology-0.9.14/photobiology/R/integrate.xy.R |only photobiology-0.9.14/photobiology/R/interpolate.spectrum.R |only photobiology-0.9.14/photobiology/R/irradiance.R |only photobiology-0.9.14/photobiology/R/leaf.data.R |only photobiology-0.9.14/photobiology/R/led.data.R |only photobiology-0.9.14/photobiology/R/meeus.R |only photobiology-0.9.14/photobiology/R/normalize.range.arg.R |only photobiology-0.9.14/photobiology/R/normalized.diff.idx.R |only photobiology-0.9.14/photobiology/R/object.data.r | 3 photobiology-0.9.14/photobiology/R/oper.spectra.R |only photobiology-0.9.14/photobiology/R/photobiology.R |only photobiology-0.9.14/photobiology/R/photon.irradiance.R |only photobiology-0.9.14/photobiology/R/photon.ratio.R |only photobiology-0.9.14/photobiology/R/photons.energy.ratio.R |only photobiology-0.9.14/photobiology/R/print.waveband.R |only photobiology-0.9.14/photobiology/R/prod.spectra.R |only photobiology-0.9.14/photobiology/R/raw.data.R |only photobiology-0.9.14/photobiology/R/rbindspct.r | 86 - photobiology-0.9.14/photobiology/R/response.data.R |only photobiology-0.9.14/photobiology/R/s.e.irrad2rgb.R |only photobiology-0.9.14/photobiology/R/spct.classes.r | 379 ++++- photobiology-0.9.14/photobiology/R/spct.clean.R |only photobiology-0.9.14/photobiology/R/spct.conversion.R | 8 photobiology-0.9.14/photobiology/R/spct.fscale.R |only photobiology-0.9.14/photobiology/R/spct.fshift.R |only photobiology-0.9.14/photobiology/R/spct.insert.spct.hinges.R |only photobiology-0.9.14/photobiology/R/spct.integrate.R |only photobiology-0.9.14/photobiology/R/spct.irrad.R |only photobiology-0.9.14/photobiology/R/spct.new.R |only photobiology-0.9.14/photobiology/R/spct.normalize.R |only photobiology-0.9.14/photobiology/R/spct.operators.R |only photobiology-0.9.14/photobiology/R/spct.peaks.R |only photobiology-0.9.14/photobiology/R/spct.reflectance.R |only photobiology-0.9.14/photobiology/R/spct.rgb.spct.R |only photobiology-0.9.14/photobiology/R/spct.smooth.spct.R |only photobiology-0.9.14/photobiology/R/spct.summaries.R |only photobiology-0.9.14/photobiology/R/spct.tag.R |only photobiology-0.9.14/photobiology/R/spct.transmittance.R |only photobiology-0.9.14/photobiology/R/spct.trim.R |only photobiology-0.9.14/photobiology/R/spct.upgrade.R |only photobiology-0.9.14/photobiology/R/split.energy.irradiance.R |only photobiology-0.9.14/photobiology/R/split.irradiance.R |only photobiology-0.9.14/photobiology/R/split.photon.irradiance.R |only photobiology-0.9.14/photobiology/R/subt.spectra.R |only photobiology-0.9.14/photobiology/R/sum.spectra.R |only photobiology-0.9.14/photobiology/R/sun.data.R |only photobiology-0.9.14/photobiology/R/trim.tails.R |only photobiology-0.9.14/photobiology/R/trim.waveband.R |only photobiology-0.9.14/photobiology/R/w.length.range2rgb.R |only photobiology-0.9.14/photobiology/R/w.length2rgb.R |only photobiology-0.9.14/photobiology/R/waveband.class.R |only photobiology-0.9.14/photobiology/R/waveband.new.R |only photobiology-0.9.14/photobiology/R/waveband.ratio.R |only photobiology-0.9.14/photobiology/R/zmspct.classes.R | 96 + photobiology-0.9.14/photobiology/build/vignette.rds |binary photobiology-0.9.14/photobiology/data/A.illuminant.spct.rda |binary photobiology-0.9.14/photobiology/data/D65.illuminant.spct.rda |binary photobiology-0.9.14/photobiology/data/beesxyz.spct.rda |binary photobiology-0.9.14/photobiology/data/black_body.spct.rda |binary photobiology-0.9.14/photobiology/data/ccd.spct.rda |binary photobiology-0.9.14/photobiology/data/ciev10.spct.rda |binary photobiology-0.9.14/photobiology/data/ciev2.spct.rda |binary photobiology-0.9.14/photobiology/data/ciexyzCC10.spct.rda |binary photobiology-0.9.14/photobiology/data/ciexyzCC2.spct.rda |binary photobiology-0.9.14/photobiology/data/ciexyzCMF10.spct.rda |binary photobiology-0.9.14/photobiology/data/ciexyzCMF2.spct.rda |binary photobiology-0.9.14/photobiology/data/clear.spct.rda |binary photobiology-0.9.14/photobiology/data/clear_body.spct.rda |binary photobiology-0.9.14/photobiology/data/green_leaf.spct.rda |only photobiology-0.9.14/photobiology/data/opaque.spct.rda |binary photobiology-0.9.14/photobiology/data/photodiode.spct.rda |binary photobiology-0.9.14/photobiology/data/polyester.spct.rda |binary photobiology-0.9.14/photobiology/data/sun.daily.data.rda |binary photobiology-0.9.14/photobiology/data/sun.daily.spct.rda |binary photobiology-0.9.14/photobiology/data/sun.data.rda |binary photobiology-0.9.14/photobiology/data/sun.spct.rda |binary photobiology-0.9.14/photobiology/data/white-led-spct.rda |only photobiology-0.9.14/photobiology/data/white_body.spct.rda |binary photobiology-0.9.14/photobiology/data/yellow.gel.rda |binary photobiology-0.9.14/photobiology/inst/doc/userguide-astronomy.R | 9 photobiology-0.9.14/photobiology/inst/doc/userguide-astronomy.Rmd | 4 photobiology-0.9.14/photobiology/inst/doc/userguide-astronomy.html | 121 + photobiology-0.9.14/photobiology/inst/doc/userguide-intro.Rmd | 4 photobiology-0.9.14/photobiology/inst/doc/userguide-intro.html | 14 photobiology-0.9.14/photobiology/inst/doc/userguide-radiation.R | 13 photobiology-0.9.14/photobiology/inst/doc/userguide-radiation.Rmd | 44 photobiology-0.9.14/photobiology/inst/doc/userguide-radiation.html | 455 ++++-- photobiology-0.9.14/photobiology/inst/staticdocs/index.r | 48 photobiology-0.9.14/photobiology/man/A.illuminant.spct.Rd | 19 photobiology-0.9.14/photobiology/man/A2T.Rd | 6 photobiology-0.9.14/photobiology/man/D2.UV586.Rd | 3 photobiology-0.9.14/photobiology/man/D2.UV653.Rd | 3 photobiology-0.9.14/photobiology/man/D2.UV654.Rd | 3 photobiology-0.9.14/photobiology/man/D2_spectrum.Rd | 3 photobiology-0.9.14/photobiology/man/D65.illuminant.spct.Rd | 19 photobiology-0.9.14/photobiology/man/FEL.BN.9101.165.Rd | 3 photobiology-0.9.14/photobiology/man/FEL_spectrum.Rd | 3 photobiology-0.9.14/photobiology/man/MathFun.Rd | 5 photobiology-0.9.14/photobiology/man/T2A.Rd | 6 photobiology-0.9.14/photobiology/man/Trig.Rd | 10 photobiology-0.9.14/photobiology/man/absorbance.Rd | 6 photobiology-0.9.14/photobiology/man/absorbance_spct.Rd | 1 photobiology-0.9.14/photobiology/man/absorptance.Rd | 6 photobiology-0.9.14/photobiology/man/absorptance_spct.Rd | 1 photobiology-0.9.14/photobiology/man/as.generic_mspct.Rd | 13 photobiology-0.9.14/photobiology/man/as.generic_spct.Rd | 15 photobiology-0.9.14/photobiology/man/as.solar_date.Rd | 1 photobiology-0.9.14/photobiology/man/as_energy.Rd | 3 photobiology-0.9.14/photobiology/man/as_quantum.Rd | 3 photobiology-0.9.14/photobiology/man/as_quantum_mol.Rd | 3 photobiology-0.9.14/photobiology/man/as_tod.Rd | 1 photobiology-0.9.14/photobiology/man/average_spct.Rd | 3 photobiology-0.9.14/photobiology/man/beesxyzCMF.spct.Rd | 10 photobiology-0.9.14/photobiology/man/black_body.spct.Rd | 18 photobiology-0.9.14/photobiology/man/c.generic_mspct.Rd | 1 photobiology-0.9.14/photobiology/man/calc_multipliers.Rd | 3 photobiology-0.9.14/photobiology/man/calc_source_output.Rd | 3 photobiology-0.9.14/photobiology/man/ccd.spct.Rd | 20 photobiology-0.9.14/photobiology/man/checkMspctVersion.Rd | 1 photobiology-0.9.14/photobiology/man/checkSpctVersion.Rd | 1 photobiology-0.9.14/photobiology/man/checkTimeUnit.Rd | 1 photobiology-0.9.14/photobiology/man/check_spct.Rd | 10 photobiology-0.9.14/photobiology/man/check_spectrum.Rd | 3 photobiology-0.9.14/photobiology/man/check_w.length.Rd | 3 photobiology-0.9.14/photobiology/man/ciev10.spct.Rd | 10 photobiology-0.9.14/photobiology/man/ciev2.spct.Rd | 10 photobiology-0.9.14/photobiology/man/ciexyzCC10.spct.Rd | 10 photobiology-0.9.14/photobiology/man/ciexyzCC2.spct.Rd | 10 photobiology-0.9.14/photobiology/man/ciexyzCMF10.spct.Rd | 10 photobiology-0.9.14/photobiology/man/ciexyzCMF2.spct.Rd | 10 photobiology-0.9.14/photobiology/man/class_spct.Rd | 1 photobiology-0.9.14/photobiology/man/clean.Rd | 22 photobiology-0.9.14/photobiology/man/clean_spct.Rd | 3 photobiology-0.9.14/photobiology/man/clear.spct.Rd | 20 photobiology-0.9.14/photobiology/man/clear_body.spct.Rd | 17 photobiology-0.9.14/photobiology/man/clear_photobio.cache.Rd | 3 photobiology-0.9.14/photobiology/man/clip_wl.Rd | 8 photobiology-0.9.14/photobiology/man/color.Rd | 10 photobiology-0.9.14/photobiology/man/convertTimeUnit.Rd | 1 photobiology-0.9.14/photobiology/man/convolve_each.Rd | 1 photobiology-0.9.14/photobiology/man/cps2irrad.Rd | 3 photobiology-0.9.14/photobiology/man/day_night.Rd | 5 photobiology-0.9.14/photobiology/man/defunct.Rd | 3 photobiology-0.9.14/photobiology/man/dim.generic_mspct.Rd | 1 photobiology-0.9.14/photobiology/man/div-.generic_spct.Rd | 5 photobiology-0.9.14/photobiology/man/div_spectra.Rd | 3 photobiology-0.9.14/photobiology/man/e2q.Rd | 8 photobiology-0.9.14/photobiology/man/e2qmol_multipliers.Rd | 3 photobiology-0.9.14/photobiology/man/e2quantum_multipliers.Rd | 3 photobiology-0.9.14/photobiology/man/e_fluence.Rd | 6 photobiology-0.9.14/photobiology/man/e_irrad.Rd | 6 photobiology-0.9.14/photobiology/man/e_ratio.Rd | 4 photobiology-0.9.14/photobiology/man/e_response.Rd | 4 photobiology-0.9.14/photobiology/man/energy_irradiance.Rd | 3 photobiology-0.9.14/photobiology/man/energy_ratio.Rd | 3 photobiology-0.9.14/photobiology/man/eq_ratio.Rd | 4 photobiology-0.9.14/photobiology/man/extract.Rd | 15 photobiology-0.9.14/photobiology/man/extract_mspct.Rd | 3 photobiology-0.9.14/photobiology/man/f_dispatcher_spct.Rd | 3 photobiology-0.9.14/photobiology/man/filter_cps.mspct.Rd | 19 photobiology-0.9.14/photobiology/man/find_peaks.Rd | 3 photobiology-0.9.14/photobiology/man/fluence.Rd | 6 photobiology-0.9.14/photobiology/man/format.solar_time.Rd | 1 photobiology-0.9.14/photobiology/man/fscale.Rd | 26 photobiology-0.9.14/photobiology/man/fscale_spct.Rd | 3 photobiology-0.9.14/photobiology/man/fshift.Rd | 26 photobiology-0.9.14/photobiology/man/fshift_spct.Rd | 3 photobiology-0.9.14/photobiology/man/generic_mspct.Rd | 12 photobiology-0.9.14/photobiology/man/getBSWFUsed.Rd | 1 photobiology-0.9.14/photobiology/man/getInstrDesc.Rd | 7 photobiology-0.9.14/photobiology/man/getInstrSettings.Rd | 7 photobiology-0.9.14/photobiology/man/getMspctVersion.Rd | 1 photobiology-0.9.14/photobiology/man/getMultipleWl.Rd | 1 photobiology-0.9.14/photobiology/man/getNormalized.Rd | 3 photobiology-0.9.14/photobiology/man/getRfrType.Rd | 1 photobiology-0.9.14/photobiology/man/getScaled.Rd | 3 photobiology-0.9.14/photobiology/man/getSpctVersion.Rd | 1 photobiology-0.9.14/photobiology/man/getTfrType.Rd | 1 photobiology-0.9.14/photobiology/man/getTimeUnit.Rd | 1 photobiology-0.9.14/photobiology/man/getWhatMeasured.Rd | 7 photobiology-0.9.14/photobiology/man/getWhenMeasured.Rd | 10 photobiology-0.9.14/photobiology/man/getWhereMeasured.Rd | 10 photobiology-0.9.14/photobiology/man/get_peaks.Rd | 3 photobiology-0.9.14/photobiology/man/green_leaf.spct.Rd |only photobiology-0.9.14/photobiology/man/insert_hinges.Rd | 3 photobiology-0.9.14/photobiology/man/insert_spct_hinges.Rd | 3 photobiology-0.9.14/photobiology/man/integrate_spct.Rd | 3 photobiology-0.9.14/photobiology/man/integrate_xy.Rd | 3 photobiology-0.9.14/photobiology/man/interpolate_spct.Rd | 5 photobiology-0.9.14/photobiology/man/interpolate_spectrum.Rd | 3 photobiology-0.9.14/photobiology/man/interpolate_wl.Rd | 6 photobiology-0.9.14/photobiology/man/irrad.Rd | 6 photobiology-0.9.14/photobiology/man/irradiance.Rd | 3 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photobiology-0.9.14/photobiology/man/labels.Rd | 6 photobiology-0.9.14/photobiology/man/log.Rd | 7 photobiology-0.9.14/photobiology/man/max.Rd | 8 photobiology-0.9.14/photobiology/man/merge.generic_spct.Rd | 3 photobiology-0.9.14/photobiology/man/midpoint.Rd | 8 photobiology-0.9.14/photobiology/man/min.Rd | 8 photobiology-0.9.14/photobiology/man/minus-.generic_spct.Rd | 5 photobiology-0.9.14/photobiology/man/mod-.generic_spct.Rd | 5 photobiology-0.9.14/photobiology/man/msmsply.Rd | 5 photobiology-0.9.14/photobiology/man/mspct_classes.Rd | 1 photobiology-0.9.14/photobiology/man/normalization.Rd | 4 photobiology-0.9.14/photobiology/man/normalize.Rd | 24 photobiology-0.9.14/photobiology/man/normalize_range_arg.Rd | 3 photobiology-0.9.14/photobiology/man/normalized_diff_ind.Rd | 3 photobiology-0.9.14/photobiology/man/opaque.spct.Rd | 3 photobiology-0.9.14/photobiology/man/oper_spectra.Rd | 3 photobiology-0.9.14/photobiology/man/peaks.Rd | 16 photobiology-0.9.14/photobiology/man/photobiology-package.Rd | 22 photobiology-0.9.14/photobiology/man/photodiode.spct.Rd | 19 photobiology-0.9.14/photobiology/man/photon_irradiance.Rd | 3 photobiology-0.9.14/photobiology/man/photon_ratio.Rd | 3 photobiology-0.9.14/photobiology/man/photons_energy_ratio.Rd | 3 photobiology-0.9.14/photobiology/man/plus-.generic_spct.Rd | 5 photobiology-0.9.14/photobiology/man/polyester.spct.Rd | 19 photobiology-0.9.14/photobiology/man/pow-.generic_spct.Rd | 3 photobiology-0.9.14/photobiology/man/print.Rd | 6 photobiology-0.9.14/photobiology/man/print.solar_time.Rd | 3 photobiology-0.9.14/photobiology/man/print.summary_generic_spct.Rd | 3 photobiology-0.9.14/photobiology/man/print.waveband.Rd | 3 photobiology-0.9.14/photobiology/man/prod_spectra.Rd | 3 photobiology-0.9.14/photobiology/man/q2e.Rd | 8 photobiology-0.9.14/photobiology/man/q_fluence.Rd | 6 photobiology-0.9.14/photobiology/man/q_irrad.Rd | 6 photobiology-0.9.14/photobiology/man/q_ratio.Rd | 4 photobiology-0.9.14/photobiology/man/q_response.Rd | 4 photobiology-0.9.14/photobiology/man/qe_ratio.Rd | 4 photobiology-0.9.14/photobiology/man/range.Rd | 8 photobiology-0.9.14/photobiology/man/rbindspct.Rd | 4 photobiology-0.9.14/photobiology/man/reflectance.Rd | 8 photobiology-0.9.14/photobiology/man/reflectance_spct.Rd | 3 photobiology-0.9.14/photobiology/man/resp_spct.Rd | 1 photobiology-0.9.14/photobiology/man/response.Rd | 4 photobiology-0.9.14/photobiology/man/rgb_spct.Rd | 3 photobiology-0.9.14/photobiology/man/rmDerivedMspct.Rd | 1 photobiology-0.9.14/photobiology/man/rmDerivedSpct.Rd | 4 photobiology-0.9.14/photobiology/man/round.Rd | 7 photobiology-0.9.14/photobiology/man/s_e_irrad2rgb.Rd | 3 photobiology-0.9.14/photobiology/man/setBSWFUsed.Rd | 4 photobiology-0.9.14/photobiology/man/setGenericSpct.Rd | 17 photobiology-0.9.14/photobiology/man/setInstrDesc.Rd | 13 photobiology-0.9.14/photobiology/man/setInstrSettings.Rd | 11 photobiology-0.9.14/photobiology/man/setMultipleWl.Rd | 4 photobiology-0.9.14/photobiology/man/setNormalized.Rd | 3 photobiology-0.9.14/photobiology/man/setRfrType.Rd | 4 photobiology-0.9.14/photobiology/man/setScaled.Rd | 3 photobiology-0.9.14/photobiology/man/setTfrType.Rd | 4 photobiology-0.9.14/photobiology/man/setTimeUnit.Rd | 4 photobiology-0.9.14/photobiology/man/setWhatMeasured.Rd | 11 photobiology-0.9.14/photobiology/man/setWhenMeasured.Rd | 15 photobiology-0.9.14/photobiology/man/setWhereMeasured.Rd | 13 photobiology-0.9.14/photobiology/man/shared_member_class.Rd | 1 photobiology-0.9.14/photobiology/man/sign.Rd | 3 photobiology-0.9.14/photobiology/man/slash-.generic_spct.Rd | 5 photobiology-0.9.14/photobiology/man/smooth_spct.Rd | 6 photobiology-0.9.14/photobiology/man/solar_time.Rd | 2 photobiology-0.9.14/photobiology/man/source_spct.Rd | 15 photobiology-0.9.14/photobiology/man/spct_classes.Rd | 1 photobiology-0.9.14/photobiology/man/split2mspct.Rd | 14 photobiology-0.9.14/photobiology/man/split_bands.Rd | 3 photobiology-0.9.14/photobiology/man/split_energy_irradiance.Rd | 3 photobiology-0.9.14/photobiology/man/split_irradiance.Rd | 3 photobiology-0.9.14/photobiology/man/split_photon_irradiance.Rd | 3 photobiology-0.9.14/photobiology/man/spread.Rd | 8 photobiology-0.9.14/photobiology/man/stepsize.Rd | 8 photobiology-0.9.14/photobiology/man/subset2mspct.Rd | 11 photobiology-0.9.14/photobiology/man/subt_spectra.Rd | 3 photobiology-0.9.14/photobiology/man/sum_spectra.Rd | 3 photobiology-0.9.14/photobiology/man/summary.Rd | 3 photobiology-0.9.14/photobiology/man/summary_spct_classes.Rd | 3 photobiology-0.9.14/photobiology/man/sun.daily.data.Rd | 25 photobiology-0.9.14/photobiology/man/sun.daily.spct.Rd | 25 photobiology-0.9.14/photobiology/man/sun.data.Rd | 26 photobiology-0.9.14/photobiology/man/sun.spct.Rd | 26 photobiology-0.9.14/photobiology/man/sun_angles.Rd | 3 photobiology-0.9.14/photobiology/man/tag.Rd | 8 photobiology-0.9.14/photobiology/man/times-.generic_spct.Rd | 5 photobiology-0.9.14/photobiology/man/transmittance.Rd | 8 photobiology-0.9.14/photobiology/man/transmittance_spct.Rd | 3 photobiology-0.9.14/photobiology/man/trimInstrDesc.Rd |only photobiology-0.9.14/photobiology/man/trimInstrSettings.Rd |only photobiology-0.9.14/photobiology/man/trim_spct.Rd | 9 photobiology-0.9.14/photobiology/man/trim_tails.Rd | 3 photobiology-0.9.14/photobiology/man/trim_waveband.Rd | 3 photobiology-0.9.14/photobiology/man/trim_wl.Rd | 8 photobiology-0.9.14/photobiology/man/twilight2angle.Rd | 1 photobiology-0.9.14/photobiology/man/tz_time_diff.Rd | 1 photobiology-0.9.14/photobiology/man/untag.Rd | 6 photobiology-0.9.14/photobiology/man/upgrade_spct.Rd | 3 photobiology-0.9.14/photobiology/man/upgrade_spectra.Rd | 3 photobiology-0.9.14/photobiology/man/v_insert_hinges.Rd | 3 photobiology-0.9.14/photobiology/man/valleys.Rd | 16 photobiology-0.9.14/photobiology/man/w_length2rgb.Rd | 3 photobiology-0.9.14/photobiology/man/w_length_range2rgb.Rd | 3 photobiology-0.9.14/photobiology/man/waveband.Rd | 6 photobiology-0.9.14/photobiology/man/waveband_ratio.Rd | 3 photobiology-0.9.14/photobiology/man/wb2rect_spct.Rd | 3 photobiology-0.9.14/photobiology/man/wb2spct.Rd | 3 photobiology-0.9.14/photobiology/man/wb2tagged_spct.Rd | 3 photobiology-0.9.14/photobiology/man/white_body.spct.Rd | 17 photobiology-0.9.14/photobiology/man/white_led.cps_spct.Rd |only photobiology-0.9.14/photobiology/man/white_led.raw_spct.Rd |only photobiology-0.9.14/photobiology/man/white_led.source_spct.Rd |only photobiology-0.9.14/photobiology/man/yellow_gel.spct.Rd | 19 photobiology-0.9.14/photobiology/vignettes/userguide-astronomy.Rmd | 4 photobiology-0.9.14/photobiology/vignettes/userguide-intro.Rmd | 4 photobiology-0.9.14/photobiology/vignettes/userguide-radiation.Rmd | 44 417 files changed, 2250 insertions(+), 1308 deletions(-)
Title: An Automated Approach to Evaluating Dose-Effect Experiments
Following Litchfield and Wilcoxon (1949)
Description: The manual approach of Litchfield and Wilcoxon (1949)
<http://jpet.aspetjournals.org/content/96/2/99.abstract>
for evaluating dose-effect experiments
is automated so that the computer can do the work.
Author: Jean V. Adams [aut, cre]
Maintainer: Jean V. Adams <jvadams@usgs.gov>
Diff between LW1949 versions 1.0.0 dated 2015-12-02 and 1.1.0 dated 2017-03-20
LW1949-1.0.0/LW1949/inst/DemoApp/rsconnect |only LW1949-1.1.0/LW1949/DESCRIPTION | 14 - LW1949-1.1.0/LW1949/MD5 | 104 ++++++------- LW1949-1.1.0/LW1949/NAMESPACE | 2 LW1949-1.1.0/LW1949/NEWS.md |only LW1949-1.1.0/LW1949/R/LW1949-package.R | 19 +- LW1949-1.1.0/LW1949/R/LWP.R | 5 LW1949-1.1.0/LW1949/R/LWestimate.R | 6 LW1949-1.1.0/LW1949/R/LWnomo1.R | 19 +- LW1949-1.1.0/LW1949/R/assessfit.R | 19 +- LW1949-1.1.0/LW1949/R/correctval.R | 4 LW1949-1.1.0/LW1949/R/fitlinear.R | 15 + LW1949-1.1.0/LW1949/R/plotDE.R | 11 - LW1949-1.1.0/LW1949/R/plotDELP.R | 38 +++- LW1949-1.1.0/LW1949/R/predLines.R | 9 - LW1949-1.1.0/LW1949/R/predLinesLP.R | 8 - LW1949-1.1.0/LW1949/R/predlinear.R | 5 LW1949-1.1.0/LW1949/build/vignette.rds |binary LW1949-1.1.0/LW1949/inst/CITATION |only LW1949-1.1.0/LW1949/inst/DemoApp/LW1949Interactive.Rmd | 7 LW1949-1.1.0/LW1949/inst/doc/Intro.R | 3 LW1949-1.1.0/LW1949/inst/doc/Intro.Rmd | 16 +- LW1949-1.1.0/LW1949/inst/doc/Intro.html | 132 +++++++++-------- LW1949-1.1.0/LW1949/man/LW1949.Rd | 20 +- LW1949-1.1.0/LW1949/man/LWP.Rd | 1 LW1949-1.1.0/LW1949/man/LWchi2.Rd | 1 LW1949-1.1.0/LW1949/man/LWestimate.Rd | 1 LW1949-1.1.0/LW1949/man/LWnomo1.Rd | 5 LW1949-1.1.0/LW1949/man/assessfit.Rd | 1 LW1949-1.1.0/LW1949/man/coefprobit.Rd | 1 LW1949-1.1.0/LW1949/man/constrain.Rd | 1 LW1949-1.1.0/LW1949/man/correctval.Rd | 1 LW1949-1.1.0/LW1949/man/dataprep.Rd | 1 LW1949-1.1.0/LW1949/man/estimable.Rd | 1 LW1949-1.1.0/LW1949/man/fill.Rd | 1 LW1949-1.1.0/LW1949/man/fitHand.Rd | 1 LW1949-1.1.0/LW1949/man/fitLWauto.Rd | 1 LW1949-1.1.0/LW1949/man/fitlinear.Rd | 14 + LW1949-1.1.0/LW1949/man/fitprobit.Rd | 1 LW1949-1.1.0/LW1949/man/fxcat.Rd | 1 LW1949-1.1.0/LW1949/man/gamtable1.Rd | 1 LW1949-1.1.0/LW1949/man/invprobit.Rd | 1 LW1949-1.1.0/LW1949/man/keeponly.Rd | 1 LW1949-1.1.0/LW1949/man/nomoCoord.Rd | 1 LW1949-1.1.0/LW1949/man/plotDE.Rd | 1 LW1949-1.1.0/LW1949/man/plotDELP.Rd | 6 LW1949-1.1.0/LW1949/man/predLines.Rd | 3 LW1949-1.1.0/LW1949/man/predLinesLP.Rd | 3 LW1949-1.1.0/LW1949/man/predlinear.Rd | 6 LW1949-1.1.0/LW1949/man/predprobit.Rd | 1 LW1949-1.1.0/LW1949/man/prettylog.Rd | 1 LW1949-1.1.0/LW1949/man/probit.Rd | 1 LW1949-1.1.0/LW1949/man/relPotency.Rd | 1 LW1949-1.1.0/LW1949/vignettes/Intro.Rmd | 16 +- 54 files changed, 307 insertions(+), 225 deletions(-)
Title: Extensions to 'ggplot2' for Radiation Spectra
Description: Additional annotations, and statsfor plotting "light"
spectra with 'ggplot2', together with specializations of ggplot()
and plot() methods for spectral data stored in objects of the classes
defined in package 'photobiology' and a plot() method for objects of
class "waveband", also defined in package 'photobiology'.
Author: Pedro J. Aphalo [aut, cre],
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggspectra versions 0.2.0 dated 2016-12-22 and 0.2.1 dated 2017-03-20
ggspectra-0.2.0/ggspectra/R/ggcolorchart.R |only ggspectra-0.2.1/ggspectra/DESCRIPTION | 20 ggspectra-0.2.1/ggspectra/MD5 | 142 ++-- ggspectra-0.2.1/ggspectra/NAMESPACE | 44 + ggspectra-0.2.1/ggspectra/NEWS | 12 ggspectra-0.2.1/ggspectra/R/axis-utils-cps-spct.R |only ggspectra-0.2.1/ggspectra/R/axis-utils-filter-spct.R |only ggspectra-0.2.1/ggspectra/R/axis-utils-raw-spct.R |only ggspectra-0.2.1/ggspectra/R/axis-utils-response-spct.R |only ggspectra-0.2.1/ggspectra/R/axis-utils-source-spct.R |only ggspectra-0.2.1/ggspectra/R/axis-utils_wlength.R |only ggspectra-0.2.1/ggspectra/R/color-chart.R |only ggspectra-0.2.1/ggspectra/R/ggplot-methods.R | 12 ggspectra-0.2.1/ggspectra/R/plot-filter-spct.R | 6 ggspectra-0.2.1/ggspectra/R/si-prefixes.R |only ggspectra-0.2.1/ggspectra/R/stat-wb-label.R | 2 ggspectra-0.2.1/ggspectra/R/stat-wl-strip.R | 2 ggspectra-0.2.1/ggspectra/build/vignette.rds |binary ggspectra-0.2.1/ggspectra/inst/doc/plot-methods.html | 8 ggspectra-0.2.1/ggspectra/inst/doc/user-guide.R | 147 ++++ ggspectra-0.2.1/ggspectra/inst/doc/user-guide.Rmd | 223 +++++++ ggspectra-0.2.1/ggspectra/inst/doc/user-guide.html | 298 +++++++++- ggspectra-0.2.1/ggspectra/man/A_internal_label.Rd |only ggspectra-0.2.1/ggspectra/man/A_plot.Rd | 1 ggspectra-0.2.1/ggspectra/man/Afr_plot.Rd | 1 ggspectra-0.2.1/ggspectra/man/O_plot.Rd | 1 ggspectra-0.2.1/ggspectra/man/R_plot.Rd | 1 ggspectra-0.2.1/ggspectra/man/Rfr_specular_label.Rd |only ggspectra-0.2.1/ggspectra/man/SI_pl_format.Rd |only ggspectra-0.2.1/ggspectra/man/SI_tg_format.Rd |only ggspectra-0.2.1/ggspectra/man/T_plot.Rd | 1 ggspectra-0.2.1/ggspectra/man/Tfr_internal_label.Rd |only ggspectra-0.2.1/ggspectra/man/black_or_white.Rd | 3 ggspectra-0.2.1/ggspectra/man/color_chart.Rd | 3 ggspectra-0.2.1/ggspectra/man/counts_label.Rd |only ggspectra-0.2.1/ggspectra/man/cps_label.Rd |only ggspectra-0.2.1/ggspectra/man/cps_plot.Rd | 1 ggspectra-0.2.1/ggspectra/man/decode_annotations.Rd | 1 ggspectra-0.2.1/ggspectra/man/decoration.Rd | 1 ggspectra-0.2.1/ggspectra/man/e_plot.Rd | 1 ggspectra-0.2.1/ggspectra/man/e_rsp_plot.Rd | 1 ggspectra-0.2.1/ggspectra/man/exponent2prefix.Rd |only ggspectra-0.2.1/ggspectra/man/geom_spct.Rd | 2 ggspectra-0.2.1/ggspectra/man/gg2spectra-ggproto.Rd | 13 ggspectra-0.2.1/ggspectra/man/ggplot.Rd | 9 ggspectra-0.2.1/ggspectra/man/ggspectra-package.Rd | 21 ggspectra-0.2.1/ggspectra/man/multiplot.Rd | 1 ggspectra-0.2.1/ggspectra/man/plot.cps_spct.Rd | 1 ggspectra-0.2.1/ggspectra/man/plot.filter_spct.Rd | 1 ggspectra-0.2.1/ggspectra/man/plot.object_spct.Rd | 1 ggspectra-0.2.1/ggspectra/man/plot.raw_spct.Rd | 1 ggspectra-0.2.1/ggspectra/man/plot.reflector_spct.Rd | 1 ggspectra-0.2.1/ggspectra/man/plot.response_spct.Rd | 1 ggspectra-0.2.1/ggspectra/man/plot.source_spct.Rd | 1 ggspectra-0.2.1/ggspectra/man/plot.waveband.Rd | 1 ggspectra-0.2.1/ggspectra/man/q_plot.Rd | 1 ggspectra-0.2.1/ggspectra/man/q_rsp_plot.Rd | 1 ggspectra-0.2.1/ggspectra/man/raw_plot.Rd | 1 ggspectra-0.2.1/ggspectra/man/s.e.irrad_label.Rd |only ggspectra-0.2.1/ggspectra/man/s.e.response_label.Rd |only ggspectra-0.2.1/ggspectra/man/scale_x_wl_continuous.Rd |only ggspectra-0.2.1/ggspectra/man/scale_y_A_internal_continuous.Rd |only ggspectra-0.2.1/ggspectra/man/scale_y_Rfr_specular_continuous.Rd |only ggspectra-0.2.1/ggspectra/man/scale_y_Tfr_internal_continuous.Rd |only ggspectra-0.2.1/ggspectra/man/scale_y_counts_continuous.Rd |only ggspectra-0.2.1/ggspectra/man/scale_y_cps_continuous.Rd |only ggspectra-0.2.1/ggspectra/man/scale_y_s.e.irrad_continuous.Rd |only ggspectra-0.2.1/ggspectra/man/scale_y_s.e.response_continuous.Rd |only ggspectra-0.2.1/ggspectra/man/sec_axis_w_number.Rd |only ggspectra-0.2.1/ggspectra/man/stat_color.Rd | 2 ggspectra-0.2.1/ggspectra/man/stat_label_peaks.Rd | 2 ggspectra-0.2.1/ggspectra/man/stat_peaks.Rd | 2 ggspectra-0.2.1/ggspectra/man/stat_wb_box.Rd | 2 ggspectra-0.2.1/ggspectra/man/stat_wb_column.Rd | 2 ggspectra-0.2.1/ggspectra/man/stat_wb_contribution.Rd | 2 ggspectra-0.2.1/ggspectra/man/stat_wb_hbar.Rd | 2 ggspectra-0.2.1/ggspectra/man/stat_wb_irrad.Rd | 4 ggspectra-0.2.1/ggspectra/man/stat_wb_label.Rd | 4 ggspectra-0.2.1/ggspectra/man/stat_wb_mean.Rd | 2 ggspectra-0.2.1/ggspectra/man/stat_wb_relative.Rd | 2 ggspectra-0.2.1/ggspectra/man/stat_wb_sirrad.Rd | 4 ggspectra-0.2.1/ggspectra/man/stat_wb_total.Rd | 2 ggspectra-0.2.1/ggspectra/man/stat_wl_strip.Rd | 4 ggspectra-0.2.1/ggspectra/man/stat_wl_summary.Rd | 2 ggspectra-0.2.1/ggspectra/man/w_length_label.Rd |only ggspectra-0.2.1/ggspectra/man/w_number.Rd |only ggspectra-0.2.1/ggspectra/vignettes/user-guide.Rmd | 223 +++++++ 87 files changed, 1099 insertions(+), 151 deletions(-)
Title: North Symbols and Scale Bars for Maps Created with 'ggplot2' or
'ggmap'
Description: Adds north symbols (18 options) and scale bars in kilometers to
maps in geographic or metric coordinates created with 'ggplot2' or 'ggmap'.
Author: Oswaldo Santos Baquero [aut, cre]
Maintainer: Oswaldo Santos Baquero <baquero@usp.br>
Diff between ggsn versions 0.3.1 dated 2016-07-06 and 0.4.0 dated 2017-03-20
DESCRIPTION | 12 ++++++------ MD5 | 22 +++++++++++----------- NEWS | 8 ++++++++ R/blank.R | 2 +- R/ggsn-package.R | 8 ++++---- R/north.R | 2 +- R/north2.R | 2 +- R/scalebar.R | 19 +++++++++++-------- man/blank.Rd | 2 +- man/ggsn-package.Rd | 8 ++++---- man/north2.Rd | 2 +- man/scalebar.Rd | 5 +++-- 12 files changed, 52 insertions(+), 40 deletions(-)
Title: Green Finance and Environmental Risk
Description: Focuses on data collecting and analyzing in green finance and environmental
risk research and analysis. Main function includes environmental data collecting from
official websites like MEP (Ministry of Environmental Protection of China, <http://www.mep.gov.cn>), water
related projects identification and environmental data visualization.
Author: Yuanchao Xu [aut, cre]
Maintainer: Yuanchao Xu <xuyuanchao37@gmail.com>
Diff between gfer versions 0.1.3 dated 2016-12-19 and 0.1.6 dated 2017-03-20
DESCRIPTION | 16 ++-- MD5 | 44 ++++++++---- NAMESPACE | 10 ++ NEWS | 28 ++++++++ R/getCSRRating.R | 147 ++++++++++++++++++++++++++++++++++-------- R/getExchange.R |only R/getIndex.R |only R/getMktCap.R |only R/getPPPList.R | 66 +++++++++++++----- R/getProxy.R | 2 R/getTickers.R |only R/getWQ.R | 35 ++++++---- README.md |only build |only inst |only man/getCSRRating.Rd | 15 ++-- man/getCSRRating_unit.Rd |only man/getExchange.Rd |only man/getHisMktCap.Rd |only man/getHisMktCap_unit.Rd |only man/getIndex.Rd |only man/getIndexConstnt.Rd |only man/getIndexData.Rd |only man/getPPPList.Rd | 12 ++- man/getPPPList_unit.Rd | 5 - man/getProxy.Rd | 4 - man/getTickers.Rd |only man/getTickers_unit.Rd |only man/getWaterQ_MEP_all.Rd | 17 +++- man/getWaterQ_MEP_all_unit.Rd | 8 +- vignettes |only 31 files changed, 305 insertions(+), 104 deletions(-)
Title: R Interface to the Europe PubMed Central RESTful Web Service
Description: An R Client for the Europe PubMed Central RESTful Web Service
(see <https://europepmc.org/RestfulWebService> for more information). It
gives access to both metadata on life science literature and open access
full texts. Europe PMC indexes all PubMed content and other literature
sources including Agricola, a bibliographic database of citations to the
agricultural literature, or Biological Patents. In addition to bibliographic
metadata, the client allows users to fetch citations and reference lists.
Links between life-science literature and other EBI databases, including
ENA, PDB or ChEMBL are also accessible. No registration or API key is
required. See the vignettes for usage examples.
Author: Najko Jahn [aut, cre, cph]
Maintainer: Najko Jahn <najko.jahn@gmail.com>
Diff between europepmc versions 0.1.3 dated 2017-02-23 and 0.1.4 dated 2017-03-20
DESCRIPTION | 6 MD5 | 52 +++--- NEWS.md | 5 R/defunct.r | 3 R/epmc_citations.r | 2 R/epmc_db.r | 2 R/epmc_db_count.r | 2 R/epmc_details.r | 2 R/epmc_hits.r | 10 - R/epmc_lablinks.r | 12 - R/epmc_lablinks_count.r | 2 R/epmc_profile.r | 17 +- R/epmc_refs.r | 2 R/epmc_search.r | 25 +-- R/epmc_tm.r | 18 +- R/epmc_tm_count.r | 2 R/tmp.r | 3 R/utils.r | 16 + README.md | 294 +++++++++++++++++------------------- inst/doc/introducing-europepmc.R | 2 inst/doc/introducing-europepmc.Rmd | 4 inst/doc/introducing-europepmc.html | 294 +++++++++++++++++------------------- man/epmc_lablinks.Rd | 8 man/epmc_profile.Rd | 6 man/epmc_search_.Rd | 6 tests/testthat/test_epmc_lablinks.r | 2 vignettes/introducing-europepmc.Rmd | 4 27 files changed, 402 insertions(+), 399 deletions(-)
Title: Kernel Smoothing
Description: Kernel smoothers for univariate and multivariate data, including density functions, density derivatives, cumulative distributions, modal clustering, discriminant analysis, and two-sample hypothesis testing.
Author: Tarn Duong <tarn.duong@gmail.com>
Maintainer: Tarn Duong <tarn.duong@gmail.com>
Diff between ks versions 1.10.5 dated 2017-01-25 and 1.10.6 dated 2017-03-20
CHANGELOG | 5 +++++ DESCRIPTION | 14 +++++++------- MD5 | 28 +++++++++++++++------------- NAMESPACE | 12 +++++++----- R/binning.R | 12 ++++++++---- R/kdde.R | 20 ++++++++++---------- R/kde.R | 9 ++++++--- R/kfe.R | 1 + R/kms.R |only R/normal.R | 18 ++++++++---------- R/selector.R | 2 +- build/vignette.rds |binary inst/doc/kde.pdf |binary man/kms.Rd |only man/ks-package.Rd | 34 +++++++++++++++++++++++----------- src/ks.c | 53 ++++++++++++++++++++++++++++++++++++++++++++++++----- 16 files changed, 139 insertions(+), 69 deletions(-)
Title: Create Disposable R Packages for Testing
Description: Create disposable R packages for testing.
You can create, install and load multiple R packages with a single
function call, and then unload, uninstall and destroy them with another
function call. This is handy when testing how some R code or an R package
behaves with respect to other packages.
Author: Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between disposables versions 1.0.1 dated 2015-07-12 and 1.0.3 dated 2017-03-20
disposables-1.0.1/disposables/inst/NEWS.md |only disposables-1.0.1/disposables/inst/README.md |only disposables-1.0.3/disposables/DESCRIPTION | 14 +++--- disposables-1.0.3/disposables/LICENSE | 4 - disposables-1.0.3/disposables/MD5 | 18 ++++---- disposables-1.0.3/disposables/NAMESPACE | 2 disposables-1.0.3/disposables/R/disposable.r | 37 +++++++++++++----- disposables-1.0.3/disposables/inst/NEWS.markdown |only disposables-1.0.3/disposables/inst/README.Rmd | 6 +- disposables-1.0.3/disposables/inst/README.markdown |only disposables-1.0.3/disposables/man/dispose_packages.Rd | 2 disposables-1.0.3/disposables/man/make_packages.Rd | 14 ++++-- 12 files changed, 63 insertions(+), 34 deletions(-)
More information about anomalyDetection at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-04 2.4-1
Title: Simulating Phylogenetic Trees
Description: Simulation methods for phylogenetic trees where (i) all tips are sampled at one time point or (ii) tips are sampled sequentially through time. (i) For sampling at one time point, simulations are performed under a constant rate birth-death process, conditioned on having a fixed number of final tips (sim.bd.taxa()), or a fixed age (sim.bd.age()), or a fixed age and number of tips (sim.bd.taxa.age()). When conditioning on the number of final tips, the method allows for shifts in rates and mass extinction events during the birth-death process (sim.rateshift.taxa()). The function sim.bd.age() (and sim.rateshift.taxa() without extinction) allow the speciation rate to change in a density-dependent way. The LTT plots of the simulations can be displayed using LTT.plot(), LTT.plot.gen() and LTT.average.root(). TreeSim further samples trees with n final tips from a set of trees generated by the common sampling algorithm stopping when a fixed number m>>n of tips is first reached (sim.gsa.taxa()). This latter method is appropriate for m-tip trees generated under a big class of models (details in the sim.gsa.taxa() man page). For incomplete phylogeny, the missing speciation events can be added through simulations (corsim()). (ii) sim.rateshifts.taxa() is generalized to sim.bdsky.stt() for serially sampled trees, where the trees are conditioned on either the number of sampled tips or the age. Furthermore, for a multitype-branching process with sequential sampling, trees on a fixed number of tips can be simulated using sim.bdtypes.stt.taxa(). This function further allows to simulate under epidemiological models with an exposed class. The function sim.genespeciestree() simulates coalescent gene trees within birth-death species trees, and sim.genetree() simulates coalescent gene trees.
Author: Tanja Stadler
Maintainer: Tanja Stadler <tanja.stadler@bsse.ethz.ch>
Diff between TreeSim versions 2.2 dated 2015-10-05 and 2.3 dated 2017-03-20
DESCRIPTION | 10 +++++----- MD5 | 7 ++++--- NAMESPACE | 6 ++---- R/gamStat.R |only man/TreeSim-package.Rd | 4 ++-- 5 files changed, 13 insertions(+), 14 deletions(-)
Title: R Package for Aqua Culture
Description: Solves the bioenergetic balance for different aquaculture sea fish (Sea Bream and Sea Bass) and shellfish (Mussel and Clam) both at individual and population scale.
Author: Baldan D. [aut, cre],
Palazzo D. [ctb],
Porporato E.M.D [ctb],
Brigolin D. [ctb]
Maintainer: Baldan D. <damiano.baldan91@gmail.com>
Diff between RAC versions 1.0.1 dated 2016-10-15 and 1.1.1 dated 2017-03-20
DESCRIPTION | 8 MD5 | 302 ++++++++++++++-------------- R/Bass_ind_RKsolver.R | 2 R/Bass_ind_dataloader.R | 2 R/Bass_ind_equations.R | 4 R/Bass_ind_main.R | 9 R/Bass_ind_post.R | 25 +- R/Bass_ind_pre.R | 14 - R/Bass_ind_skeleton.R | 2 R/Bass_pop_RKsolver.R | 2 R/Bass_pop_dataloader.R | 2 R/Bass_pop_equations.R | 4 R/Bass_pop_loop.R | 2 R/Bass_pop_main.R | 9 R/Bass_pop_post.R | 50 ++++ R/Bass_pop_pre.R | 10 R/Bass_pop_skeleton.R | 2 R/Bream_ind_RKsolver.R | 2 R/Bream_ind_dataloader.R | 2 R/Bream_ind_equations.R | 4 R/Bream_ind_main.R | 9 R/Bream_ind_post.R | 25 +- R/Bream_ind_pre.R | 9 R/Bream_ind_skeleton.R | 2 R/Bream_pop_RKsolver.R | 2 R/Bream_pop_dataloader.R | 2 R/Bream_pop_equations.R | 4 R/Bream_pop_loop.R | 2 R/Bream_pop_main.R | 9 R/Bream_pop_post.R | 48 ++++ R/Bream_pop_pre.R | 12 - R/Bream_pop_skeleton.R | 2 R/ClamF_ind_RKsolver.R | 2 R/ClamF_ind_dataloader.R | 2 R/ClamF_ind_equations.R | 4 R/ClamF_ind_main.R | 7 R/ClamF_ind_post.R | 24 +- R/ClamF_ind_pre.R | 8 R/ClamF_pop_RKsolver.R | 2 R/ClamF_pop_dataloader.R | 2 R/ClamF_pop_equations.R | 4 R/ClamF_pop_loop.R | 2 R/ClamF_pop_main.R | 7 R/ClamF_pop_post.R | 50 ++++ R/ClamF_pop_pre.R | 9 R/Clam_ind_RKsolver.R | 6 R/Clam_ind_equations.R | 2 R/Clam_ind_main.R | 5 R/Clam_ind_post.R | 24 +- R/Clam_ind_pre.R | 10 R/Clam_pop_RKsolver.R | 4 R/Clam_pop_equations.R | 4 R/Clam_pop_loop.R | 2 R/Clam_pop_main.R | 7 R/Clam_pop_post.R | 48 ++++ R/Clam_pop_pre.R | 11 - R/Mussel_ind_RKsolver.R | 19 + R/Mussel_ind_equations.R | 33 +-- R/Mussel_ind_main.R | 5 R/Mussel_ind_post.R | 57 ++++- R/Mussel_ind_pre.R | 9 R/Mussel_pop_RKsolver.R | 19 + R/Mussel_pop_dataloader.R | 14 - R/Mussel_pop_equations.R | 11 - R/Mussel_pop_loop.R | 33 ++- R/Mussel_pop_main.R | 4 R/Mussel_pop_post.R | 159 ++++++++++++-- R/Mussel_pop_pre.R | 9 R/Pop_fun.R | 2 inst/doc/vignette.Rmd | 61 ++--- inst/doc/vignette.html | 61 +++-- inst/extdata/Bass_ind_data/Parameters.csv | 3 inst/extdata/Bass_pop_data/Parameters.csv | 3 inst/extdata/Bass_pop_data/Population.csv | 2 inst/extdata/Bream_ind_data/Parameters.csv | 1 inst/extdata/Bream_pop_data/Parameters.csv | 1 inst/extdata/Bream_pop_data/Population.csv | 2 inst/extdata/ClamF_ind_data/Parameters.csv | 3 inst/extdata/ClamF_pop_data/Parameters.csv | 3 inst/extdata/ClamF_pop_data/Population.csv | 2 inst/extdata/Clam_ind_data/Parameters.csv | 1 inst/extdata/Clam_pop_data/Parameters.csv | 3 inst/extdata/Clam_pop_data/Population.csv | 2 inst/extdata/Mussel_ind_data/Parameters.csv | 3 inst/extdata/Mussel_pop_data/Parameters.csv | 3 inst/extdata/Mussel_pop_data/Population.csv | 2 man/Bass_ind_RKsolver.Rd | 4 man/Bass_ind_dataloader.Rd | 4 man/Bass_ind_equations.Rd | 4 man/Bass_ind_main.Rd | 6 man/Bass_ind_post.Rd | 10 man/Bass_ind_pre.Rd | 4 man/Bass_ind_skeleton.Rd | 4 man/Bass_pop_RKsolver.Rd | 4 man/Bass_pop_dataloader.Rd | 4 man/Bass_pop_equations.Rd | 4 man/Bass_pop_loop.Rd | 4 man/Bass_pop_main.Rd | 6 man/Bass_pop_post.Rd | 10 man/Bass_pop_pre.Rd | 4 man/Bass_pop_skeleton.Rd | 4 man/Bream_ind_RKsolver.Rd | 4 man/Bream_ind_dataloader.Rd | 4 man/Bream_ind_equations.Rd | 4 man/Bream_ind_main.Rd | 6 man/Bream_ind_post.Rd | 10 man/Bream_ind_pre.Rd | 2 man/Bream_ind_skeleton.Rd | 4 man/Bream_pop_RKsolver.Rd | 4 man/Bream_pop_dataloader.Rd | 4 man/Bream_pop_equations.Rd | 4 man/Bream_pop_loop.Rd | 4 man/Bream_pop_main.Rd | 6 man/Bream_pop_post.Rd | 6 man/Bream_pop_pre.Rd | 2 man/Bream_pop_skeleton.Rd | 4 man/ClamF_ind_RKsolver.Rd | 4 man/ClamF_ind_dataloader.Rd | 4 man/ClamF_ind_equations.Rd | 4 man/ClamF_ind_main.Rd | 4 man/ClamF_ind_post.Rd | 10 man/ClamF_ind_pre.Rd | 4 man/ClamF_pop_RKsolver.Rd | 4 man/ClamF_pop_dataloader.Rd | 4 man/ClamF_pop_equations.Rd | 4 man/ClamF_pop_loop.Rd | 4 man/ClamF_pop_main.Rd | 4 man/ClamF_pop_post.Rd | 10 man/ClamF_pop_pre.Rd | 4 man/Clam_ind_equations.Rd | 2 man/Clam_ind_main.Rd | 2 man/Clam_ind_post.Rd | 10 man/Clam_ind_pre.Rd | 2 man/Clam_pop_RKsolver.Rd | 4 man/Clam_pop_equations.Rd | 4 man/Clam_pop_loop.Rd | 4 man/Clam_pop_main.Rd | 4 man/Clam_pop_post.Rd | 6 man/Clam_pop_pre.Rd | 2 man/Mussel_ind_RKsolver.Rd | 4 man/Mussel_ind_equations.Rd | 2 man/Mussel_ind_main.Rd | 2 man/Mussel_ind_post.Rd | 6 man/Mussel_ind_pre.Rd | 2 man/Mussel_pop_RKsolver.Rd | 4 man/Mussel_pop_equations.Rd | 4 man/Mussel_pop_loop.Rd | 4 man/Mussel_pop_post.Rd | 6 man/Mussel_pop_pre.Rd | 2 man/Pop_fun.Rd | 2 man/clam_ind_RKsolver.Rd | 4 vignettes/vignette.Rmd | 75 +++--- 152 files changed, 1070 insertions(+), 654 deletions(-)
Title: Functions for Medical Statistics Book with some Demographic Data
Description: Several utility functions for the book entitled
"Practices of Medical and Health Data Analysis using R"
(Pearson Education Japan, 2007) with Japanese demographic
data and some demographic analysis related functions.
Author: Minato Nakazawa <minato-nakazawa@umin.net>
Maintainer: Minato Nakazawa <minato-nakazawa@umin.net>
Diff between fmsb versions 0.5.2 dated 2015-09-11 and 0.6.0 dated 2017-03-20
DESCRIPTION | 8 +- MD5 | 29 ++++---- NAMESPACE | 8 +- NEWS | 11 +++ R/demogjpn.R | 175 ++++++++++++++++++++++++++++++++++++++++--------- R/fmsb.R | 48 ++++++++++++- man/JASM.Rd | 25 ++++--- man/Jfert.Rd | 38 +++++----- man/Jlife.Rd | 11 +-- man/Jpop.Rd | 15 +++- man/Jpopl.Rd | 15 ++-- man/Jvital.Rd | 6 + man/lifetable.Rd | 12 +++ man/oddsratio.Rd | 8 +- man/riskratio.Rd | 8 +- man/spearman.ci.sas.Rd |only 16 files changed, 318 insertions(+), 99 deletions(-)
Title: A Computational Tool for Astrochronology
Description: Routines for astrochronologic testing, astronomical time scale construction, and time series analysis. Also included are a range of statistical analysis and modeling routines that are relevant to time scale development and paleoclimate analysis.
Author: Stephen Meyers
Maintainer: Stephen Meyers <smeyers@geology.wisc.edu>
Diff between astrochron versions 0.6.5 dated 2016-09-05 and 0.6.6 dated 2017-03-20
astrochron-0.6.5/astrochron/R/FUNCTION-anchorTime_v2.R |only astrochron-0.6.5/astrochron/R/FUNCTION-asm_v10a.R |only astrochron-0.6.5/astrochron/R/FUNCTION-autoPlot_v8.R |only astrochron-0.6.5/astrochron/R/FUNCTION-eha_v19.R |only astrochron-0.6.5/astrochron/R/FUNCTION-getLaskar_v2.R |only astrochron-0.6.5/astrochron/R/FUNCTION-integratePower_v8.R |only astrochron-0.6.5/astrochron/R/FUNCTION-lowspec_v19.R |only astrochron-0.6.5/astrochron/R/FUNCTION-mtmML96_v13.R |only astrochron-0.6.5/astrochron/R/FUNCTION-mtm_v17.R |only astrochron-0.6.5/astrochron/R/FUNCTION-peak_v6.R |only astrochron-0.6.5/astrochron/R/FUNCTION-plotEha_v3.R |only astrochron-0.6.5/astrochron/R/FUNCTION-readMatrix_v6.R |only astrochron-0.6.5/astrochron/R/FUNCTION-read_v27.R |only astrochron-0.6.5/astrochron/R/FUNCTION-sortNave_v7.R |only astrochron-0.6.5/astrochron/R/FUNCTION-stepHeat_v4.R |only astrochron-0.6.5/astrochron/R/FUNCTION-testPrecession_v3.R |only astrochron-0.6.5/astrochron/R/FUNCTION-timeOptSim_v7b.R |only astrochron-0.6.5/astrochron/R/FUNCTION-timeOpt_v7c.R |only astrochron-0.6.5/astrochron/R/FUNCTION-traceFreq_v5.R |only astrochron-0.6.5/astrochron/R/FUNCTION-trough_v2.R |only astrochron-0.6.5/astrochron/R/FUNCTION-tune_v7a.R |only astrochron-0.6.5/astrochron/R/FUNCTION-wtMean_v12.R |only astrochron-0.6.6/astrochron/DESCRIPTION | 8 - astrochron-0.6.6/astrochron/MD5 | 73 ++++++------- astrochron-0.6.6/astrochron/NAMESPACE | 3 astrochron-0.6.6/astrochron/R/FUNCTION-anchorTime_v3.R |only astrochron-0.6.6/astrochron/R/FUNCTION-asm_v10b.R |only astrochron-0.6.6/astrochron/R/FUNCTION-autoPlot_v9.R |only astrochron-0.6.6/astrochron/R/FUNCTION-eha_v21a.R |only astrochron-0.6.6/astrochron/R/FUNCTION-getLaskar_v3.R |only astrochron-0.6.6/astrochron/R/FUNCTION-integratePower_v9.R |only astrochron-0.6.6/astrochron/R/FUNCTION-lowspec_v19a.R |only astrochron-0.6.6/astrochron/R/FUNCTION-mtmML96_v14a.R |only astrochron-0.6.6/astrochron/R/FUNCTION-mtm_v18a.R |only astrochron-0.6.6/astrochron/R/FUNCTION-peak_v6a.R |only astrochron-0.6.6/astrochron/R/FUNCTION-plotEha_v4.R |only astrochron-0.6.6/astrochron/R/FUNCTION-readMatrix_v7.R |only astrochron-0.6.6/astrochron/R/FUNCTION-read_v28a.R |only astrochron-0.6.6/astrochron/R/FUNCTION-sortNave_v7a.R |only astrochron-0.6.6/astrochron/R/FUNCTION-stepHeat_v5.R |only astrochron-0.6.6/astrochron/R/FUNCTION-testPrecession_v4.R |only astrochron-0.6.6/astrochron/R/FUNCTION-timeOptSim_v7c.R |only astrochron-0.6.6/astrochron/R/FUNCTION-timeOpt_v8c.R |only astrochron-0.6.6/astrochron/R/FUNCTION-traceFreq_v6.R |only astrochron-0.6.6/astrochron/R/FUNCTION-trough_v2a.R |only astrochron-0.6.6/astrochron/R/FUNCTION-tune_v7b.R |only astrochron-0.6.6/astrochron/R/FUNCTION-wtMean_v13.R |only astrochron-0.6.6/astrochron/data/modelA.rda |binary astrochron-0.6.6/astrochron/inst/CITATION | 4 astrochron-0.6.6/astrochron/man/astrochron-package.Rd | 6 - astrochron-0.6.6/astrochron/man/autoPlot.Rd | 4 astrochron-0.6.6/astrochron/man/bandpass.Rd | 6 - astrochron-0.6.6/astrochron/man/eha.Rd | 6 - astrochron-0.6.6/astrochron/man/periodogram.Rd | 5 astrochron-0.6.6/astrochron/man/plotEha.Rd | 19 +-- astrochron-0.6.6/astrochron/man/read.Rd | 3 astrochron-0.6.6/astrochron/man/readMatrix.Rd | 3 astrochron-0.6.6/astrochron/man/timeOpt.Rd | 6 - astrochron-0.6.6/astrochron/man/traceFreq.Rd | 6 - astrochron-0.6.6/astrochron/src/init.c |only 60 files changed, 84 insertions(+), 68 deletions(-)
Title: Gene and Splice Site Annotation Using Annotation Data from
Ensembl and UCSC Genome Browsers
Description: Contains functionality for import and managing of downloaded genome annotation Data from Ensembl genome browser (European Bioinformatics Institute) and from UCSC genome browser (University of California, Santa Cruz) and annotation routines for genomic positions and splice site positions.
Author: Wolfgang Kaisers
Maintainer: Wolfgang Kaisers <kaisers@med.uni-duesseldorf.de>
Diff between refGenome versions 1.7.0 dated 2016-05-13 and 1.7.3 dated 2017-03-20
refGenome-1.7.0/refGenome/R/geneModel.r |only refGenome-1.7.0/refGenome/R/refGenome.r |only refGenome-1.7.0/refGenome/tests/test_overlap_juncs.r |only refGenome-1.7.0/refGenome/tests/test_read_gtf.r |only refGenome-1.7.0/refGenome/tests/test_unify_juncs.r |only refGenome-1.7.0/refGenome/tests/test_unify_ranges.r |only refGenome-1.7.3/refGenome/ChangeLog | 1 refGenome-1.7.3/refGenome/DESCRIPTION | 10 - refGenome-1.7.3/refGenome/MD5 | 28 +- refGenome-1.7.3/refGenome/NAMESPACE | 2 refGenome-1.7.3/refGenome/R/geneModel.R |only refGenome-1.7.3/refGenome/R/refGenome.R |only refGenome-1.7.3/refGenome/build/vignette.rds |binary refGenome-1.7.3/refGenome/inst/doc/readGTF.pdf |binary refGenome-1.7.3/refGenome/inst/doc/refGenome.R | 2 refGenome-1.7.3/refGenome/inst/doc/refGenome.Rnw | 3 refGenome-1.7.3/refGenome/inst/doc/refGenome.pdf |binary refGenome-1.7.3/refGenome/src/refGenome.cpp | 2 refGenome-1.7.3/refGenome/tests/test-all.R | 181 ++++++++++++++++--- 19 files changed, 185 insertions(+), 44 deletions(-)
Title: Read and Write BAM (Binary Alignment) Files
Description: Provides an interface to functions of the 'SAMtools' C-Library by Heng Li.
Author: Wolfgang Kaisers
Maintainer: Wolfgang Kaisers <kaisers@med.uni-duesseldorf.de>
Diff between rbamtools versions 2.16.0 dated 2016-05-29 and 2.16.4 dated 2017-03-20
rbamtools-2.16.0/rbamtools/R/rbamtools.r |only rbamtools-2.16.0/rbamtools/R/sampleBamFiles.r |only rbamtools-2.16.0/rbamtools/R/segmentize.r |only rbamtools-2.16.0/rbamtools/tests/test_bam_align.r |only rbamtools-2.16.0/rbamtools/tests/test_bam_header.r |only rbamtools-2.16.0/rbamtools/tests/test_bam_range.r |only rbamtools-2.16.0/rbamtools/tests/test_genome_partition.r |only rbamtools-2.16.0/rbamtools/tests/test_range_seg_count.r |only rbamtools-2.16.0/rbamtools/tests/test_vector_segmentation.r |only rbamtools-2.16.4/rbamtools/ChangeLog | 6 rbamtools-2.16.4/rbamtools/DESCRIPTION | 10 rbamtools-2.16.4/rbamtools/MD5 | 30 - rbamtools-2.16.4/rbamtools/NAMESPACE | 2 rbamtools-2.16.4/rbamtools/R/rbamtools.R |only rbamtools-2.16.4/rbamtools/R/sampleBamFiles.R |only rbamtools-2.16.4/rbamtools/R/segmentize.R |only rbamtools-2.16.4/rbamtools/build/vignette.rds |binary rbamtools-2.16.4/rbamtools/inst/doc/rbamtools.R | 42 ++ rbamtools-2.16.4/rbamtools/inst/doc/rbamtools.Rnw | 95 ++++- rbamtools-2.16.4/rbamtools/inst/doc/rbamtools.pdf |binary rbamtools-2.16.4/rbamtools/src/rbamtools.cpp | 2 rbamtools-2.16.4/rbamtools/tests/test-all.R | 200 +++++++++++- 22 files changed, 329 insertions(+), 58 deletions(-)
More information about Rvoterdistance at CRAN
Permanent link
Title: Interact with the UK AIR Pollution Database from DEFRA
Description: Get data from DEFRA's UK-AIR website <https://uk-air.defra.gov.uk/>. It basically scrapes the HTML content.
Author: Claudia Vitolo [aut, cre],
Andrew Russell [ctb] (This package is part of the KEHRA project and
Andrew supervised the technical/software development.),
Allan Tucker [ctb] (This package is part of the KEHRA project and Allan
supervised the technical/software development.),
Maëlle Salmon [ctb] (Maëlle Salmon reviewed the package for rOpenSci,
see https://github.com/ropensci/onboarding/issues/68),
Hao Zhu [ctb] (Hao Zhu reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/68)
Maintainer: Claudia Vitolo <cvitolodev@gmail.com>
Diff between rdefra versions 0.1 dated 2016-06-13 and 0.3.4 dated 2017-03-20
rdefra-0.1/rdefra/R/EastingNorthing.R |only rdefra-0.1/rdefra/R/catalogue.R |only rdefra-0.1/rdefra/R/get1Hdata.R |only rdefra-0.1/rdefra/R/getSiteID.R |only rdefra-0.1/rdefra/man/EastingNorthing.Rd |only rdefra-0.1/rdefra/man/catalogue.Rd |only rdefra-0.1/rdefra/man/get1Hdata.Rd |only rdefra-0.1/rdefra/man/getSiteID.Rd |only rdefra-0.3.4/rdefra/DESCRIPTION | 34 +++++++++--- rdefra-0.3.4/rdefra/MD5 | 43 +++++++++++----- rdefra-0.3.4/rdefra/NAMESPACE | 36 +++++++++---- rdefra-0.3.4/rdefra/NEWS.md |only rdefra-0.3.4/rdefra/R/rdefra-package.R |only rdefra-0.3.4/rdefra/R/stations.R |only rdefra-0.3.4/rdefra/R/ukair_catalogue.R |only rdefra-0.3.4/rdefra/R/ukair_get_coordinates.R |only rdefra-0.3.4/rdefra/R/ukair_get_hourly_data.R |only rdefra-0.3.4/rdefra/R/ukair_get_site_id.R |only rdefra-0.3.4/rdefra/README.md |only rdefra-0.3.4/rdefra/build |only rdefra-0.3.4/rdefra/data/stations.rda |binary rdefra-0.3.4/rdefra/inst |only rdefra-0.3.4/rdefra/man/rdefra.Rd |only rdefra-0.3.4/rdefra/man/stations.Rd | 61 +++++++++++------------ rdefra-0.3.4/rdefra/man/ukair_catalogue.Rd |only rdefra-0.3.4/rdefra/man/ukair_get_coordinates.Rd |only rdefra-0.3.4/rdefra/man/ukair_get_hourly_data.Rd |only rdefra-0.3.4/rdefra/man/ukair_get_site_id.Rd |only rdefra-0.3.4/rdefra/tests |only rdefra-0.3.4/rdefra/vignettes |only 30 files changed, 109 insertions(+), 65 deletions(-)
Title: LogNormal Response Time Item Response Theory Models
Description: Allows the simultaneous analysis of responses and response times in an Item Response Theory (IRT) modelling framework. Supports covariates for item and person (random) parameters. Parameter estimation is done with a MCMC algorithm. LNIRT replaces the package CIRT, which was written by Rinke Klein Entink. For reference, see the paper by Fox, Klein Entink and Van der Linden (2007), "Modeling of Responses and Response Times with the Package cirt", Journal of Statistical Software, <doi:10.18637/jss.v020.i07>.
Author: Jean-Paul Fox, Rinke Klein Entink, Konrad Klotzke
Maintainer: Konrad Klotzke <omd.bms.utwente.stats@gmail.com>
Diff between LNIRT versions 0.1.0 dated 2016-10-06 and 0.2.0 dated 2017-03-20
DESCRIPTION | 10 - MD5 | 20 +- R/LNIRT.R | 131 +++++++++++++++-- R/LNRT.R | 61 ++++++-- R/MCMC.R | 28 +++ R/print.R | 409 +++++++++++++++++++++++++++++++++++++++++++++++++------- R/simLNIRT.R | 253 ++++++++++++++++++++++------------ R/summary.R | 47 ++++++ man/LNIRT.Rd | 17 +- man/LNRT.Rd | 1 man/simLNIRT.Rd | 11 + 11 files changed, 797 insertions(+), 191 deletions(-)
More information about EstimateGroupNetwork at CRAN
Permanent link
Title: A Package for Graphical Modelling in R
Description: The 'gRbase' package provides general features
which are used by other graphical modelling packages, in particular
by the packages 'gRain', 'gRim' and 'gRc'.
'gRbase' contains several data sets relevant for use in connection with
graphical models. Almost all data sets used in the book Graphical
Models with R (2012) are contained in 'gRbase'.
'gRbase' implements several graph algorithms (based mainly on
representing graphs as adjacency matrices - either in the form
of a standard matrix or a sparse matrix). Some graph
algorithms are:
(i) maximum cardinality search (for marked and unmarked graphs).
(ii) moralize.
(iii) triangulate.
(iv) junction tree.
'gRbase' facilitates array operations,
'gRbase' implements functions for testing for conditional independence.
'gRbase' illustrates how hierarchical log-linear models may be
implemented and describes concept of graphical meta
data. These features, however, are not maintained anymore and
remains in 'gRbase' only because there exists a paper describing
these facilities: A Common Platform for Graphical Models in R:
The 'gRbase' Package, Journal of Statistical Software, Vol 14,
No 17, 2005.
NOTICE Proper functionality of 'gRbase' requires that the packages graph,
'Rgraphviz' and 'RBGL' are installed from 'bioconductor'; for
installation instructions please refer to the web page given below.
Author: Søren Højsgaard <sorenh@math.aau.dk>
Maintainer: Søren Højsgaard <sorenh@math.aau.dk>
Diff between gRbase versions 1.8-1 dated 2016-10-16 and 1.8-3 dated 2017-03-20
gRbase-1.8-1/gRbase/R/data-ashtrees.R |only gRbase-1.8-1/gRbase/R/data-bodyfat.R |only gRbase-1.8-1/gRbase/R/data-breastcancer.R |only gRbase-1.8-1/gRbase/R/data-cad.R |only gRbase-1.8-1/gRbase/R/data-carcass.R |only gRbase-1.8-1/gRbase/R/data-chestsim.R |only gRbase-1.8-1/gRbase/R/data-dietox.R |only gRbase-1.8-1/gRbase/R/data-dumping.R |only gRbase-1.8-1/gRbase/R/data-lizard.R |only gRbase-1.8-1/gRbase/R/data-mathmark.R |only gRbase-1.8-1/gRbase/R/data-mildew.R |only gRbase-1.8-1/gRbase/R/data-milkcomp.R |only gRbase-1.8-1/gRbase/R/data-nutrimouse.R |only gRbase-1.8-1/gRbase/R/data-rats.R |only gRbase-1.8-1/gRbase/R/data-reinis.R |only gRbase-1.8-1/gRbase/R/data-winecomp.R |only gRbase-1.8-1/gRbase/R/gRbase-utilities-FIXME-cleanup.R |only gRbase-1.8-1/gRbase/R/t_array-algebra-cR.R |only gRbase-1.8-3/gRbase/ChangeLog | 38 gRbase-1.8-3/gRbase/DESCRIPTION | 9 gRbase-1.8-3/gRbase/MD5 | 165 - gRbase-1.8-3/gRbase/NAMESPACE | 20 gRbase-1.8-3/gRbase/R/Generics.R | 10 gRbase-1.8-3/gRbase/R/RcppExports.R | 562 ++-- gRbase-1.8-3/gRbase/R/data-description.R |only gRbase-1.8-3/gRbase/R/gRbase-internal.R | 2 gRbase-1.8-3/gRbase/R/gRbase-utilities.R |only gRbase-1.8-3/gRbase/R/graph-querygraph.R | 2 gRbase-1.8-3/gRbase/R/graph-rip.R | 43 gRbase-1.8-3/gRbase/R/graph-triang.R |only gRbase-1.8-3/gRbase/R/graph-triangulate.R | 81 gRbase-1.8-3/gRbase/R/graph-utilities.R | 129 - gRbase-1.8-3/gRbase/R/t_arDist.R | 73 gRbase-1.8-3/gRbase/R/t_array-algebra.R | 64 gRbase-1.8-3/gRbase/R/t_array-create.R | 24 gRbase-1.8-3/gRbase/R/t_array-operations-bristol.R | 6 gRbase-1.8-3/gRbase/R/t_array-operations.R | 124 - gRbase-1.8-3/gRbase/R/t_array-parray.R | 22 gRbase-1.8-3/gRbase/R/t_array-properties.R | 20 gRbase-1.8-3/gRbase/R/t_array-simulate-R.R | 8 gRbase-1.8-3/gRbase/R/t_array-slice.R | 47 gRbase-1.8-3/gRbase/R/yyyPrim.R | 8 gRbase-1.8-3/gRbase/README.md |only gRbase-1.8-3/gRbase/TODO | 6 gRbase-1.8-3/gRbase/build/vignette.rds |binary gRbase-1.8-3/gRbase/inst/doc/gRbase-arrays.R | 486 +--- gRbase-1.8-3/gRbase/inst/doc/gRbase-arrays.Rnw | 641 +++-- gRbase-1.8-3/gRbase/inst/doc/gRbase-arrays.pdf |binary gRbase-1.8-3/gRbase/inst/doc/gRbase-graphs.R | 386 +-- gRbase-1.8-3/gRbase/inst/doc/gRbase-graphs.Rnw | 1989 ++++++++--------- gRbase-1.8-3/gRbase/inst/doc/gRbase-graphs.pdf |binary gRbase-1.8-3/gRbase/man/BodyFat.Rd | 2 gRbase-1.8-3/gRbase/man/Nutrimouse.Rd | 2 gRbase-1.8-3/gRbase/man/array-algebra.Rd | 43 gRbase-1.8-3/gRbase/man/array-create.Rd | 11 gRbase-1.8-3/gRbase/man/array-dimnames.Rd | 16 gRbase-1.8-3/gRbase/man/array-distribution.Rd | 59 gRbase-1.8-3/gRbase/man/array-normalize.Rd | 11 gRbase-1.8-3/gRbase/man/array-operations.Rd | 105 gRbase-1.8-3/gRbase/man/array-slice.Rd | 40 gRbase-1.8-3/gRbase/man/ashtrees.Rd | 4 gRbase-1.8-3/gRbase/man/breastcancer.Rd | 2 gRbase-1.8-3/gRbase/man/cad.Rd | 2 gRbase-1.8-3/gRbase/man/carcass.Rd | 2 gRbase-1.8-3/gRbase/man/chestSim.Rd | 2 gRbase-1.8-3/gRbase/man/dietox.Rd | 2 gRbase-1.8-3/gRbase/man/dumping.Rd | 2 gRbase-1.8-3/gRbase/man/gRbase-generics.Rd | 10 gRbase-1.8-3/gRbase/man/gRbase-internal.Rd | 3 gRbase-1.8-3/gRbase/man/graph-cliques.Rd | 6 gRbase-1.8-3/gRbase/man/graph-edgeList.Rd | 9 gRbase-1.8-3/gRbase/man/graph-rip.Rd | 12 gRbase-1.8-3/gRbase/man/graph-triang.Rd |only gRbase-1.8-3/gRbase/man/graph-triangulate.Rd | 28 gRbase-1.8-3/gRbase/man/graph-vpar.Rd | 23 gRbase-1.8-3/gRbase/man/lizard.Rd | 6 gRbase-1.8-3/gRbase/man/mathmark.Rd | 2 gRbase-1.8-3/gRbase/man/mildew.Rd | 2 gRbase-1.8-3/gRbase/man/milkcomp.Rd | 2 gRbase-1.8-3/gRbase/man/old-parray.Rd | 18 gRbase-1.8-3/gRbase/man/rats.Rd | 2 gRbase-1.8-3/gRbase/man/reinis.Rd | 2 gRbase-1.8-3/gRbase/man/simulateArray.Rd | 8 gRbase-1.8-3/gRbase/man/wine.Rd | 2 gRbase-1.8-3/gRbase/src/Makevars | 5 gRbase-1.8-3/gRbase/src/RcppExports.cpp | 56 gRbase-1.8-3/gRbase/src/_g_mcsMAT.cpp | 4 gRbase-1.8-3/gRbase/src/_g_triangulate-elo-MAT.cpp |only gRbase-1.8-3/gRbase/src/_g_triangulateMAT.cpp | 61 gRbase-1.8-3/gRbase/src/_t_tableClass.cpp | 2 gRbase-1.8-3/gRbase/src/_t_tableCore.cpp | 79 gRbase-1.8-3/gRbase/src/_u_utilities.c | 16 gRbase-1.8-3/gRbase/src/init.c |only gRbase-1.8-3/gRbase/vignettes/fulldef.bib | 212 - gRbase-1.8-3/gRbase/vignettes/gRbase-arrays.Rnw | 641 +++-- gRbase-1.8-3/gRbase/vignettes/gRbase-graphs.Rnw | 1989 ++++++++--------- 96 files changed, 4318 insertions(+), 4152 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis.
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut, cre],
Martina Morris [aut],
Li Wang [ctb],
Kirk Li [ctb],
Skye Bender-deMoll [ctb]
Maintainer: Pavel N. Krivitsky <pavel@uow.edu.au>
Diff between ergm versions 3.6.1 dated 2017-01-05 and 3.7.0 dated 2017-03-20
ergm-3.6.1/ergm/tests/ergm.mixed.R |only ergm-3.7.0/ergm/BUGS | 5 ergm-3.7.0/ergm/DESCRIPTION | 8 ergm-3.7.0/ergm/MD5 | 371 +++--- ergm-3.7.0/ergm/NAMESPACE | 2 ergm-3.7.0/ergm/R/InitErgm.bipartite.R | 9 ergm-3.7.0/ergm/R/InitErgmTerm.R | 159 +- ergm-3.7.0/ergm/R/InitErgmTerm.bipartite.degree.R | 9 ergm-3.7.0/ergm/R/InitErgmTerm.dgw_sp.R | 939 ++++++++-------- ergm-3.7.0/ergm/R/InitErgmTerm.extra.R | 13 ergm-3.7.0/ergm/R/InitErgmTerm.indices.R | 9 ergm-3.7.0/ergm/R/InitWtErgmTerm.R | 35 ergm-3.7.0/ergm/R/approx.hotelling.diff.test.R | 9 ergm-3.7.0/ergm/R/build_term_index.R | 633 +++++----- ergm-3.7.0/ergm/R/check.ErgmTerm.R | 4 ergm-3.7.0/ergm/R/control.ergm.R | 14 ergm-3.7.0/ergm/R/control.simulate.R | 12 ergm-3.7.0/ergm/R/ergm.CD.fixed.R | 11 ergm-3.7.0/ergm/R/ergm.MCMCse.lognormal.R | 6 ergm-3.7.0/ergm/R/ergm.MCMLE.R | 3 ergm-3.7.0/ergm/R/ergm.R | 10 ergm-3.7.0/ergm/R/ergm.bridge.R | 8 ergm-3.7.0/ergm/R/ergm.getCDsample.R | 9 ergm-3.7.0/ergm/R/ergm.getglobalstats.R | 2 ergm-3.7.0/ergm/R/ergm.mapl.R | 2 ergm-3.7.0/ergm/R/ergm.mple.R | 9 ergm-3.7.0/ergm/R/ergm.pen.glm.R | 9 ergm-3.7.0/ergm/R/ergm.san.R | 3 ergm-3.7.0/ergm/R/ergm.stepping.R | 134 +- ergm-3.7.0/ergm/R/ergmMPLE.R | 10 ergm-3.7.0/ergm/R/formula.utils.R | 4 ergm-3.7.0/ergm/R/get.node.attr.R | 9 ergm-3.7.0/ergm/R/gof.ergm.R | 29 ergm-3.7.0/ergm/R/is.durational.R | 79 - ergm-3.7.0/ergm/R/logLik.ergm.R | 16 ergm-3.7.0/ergm/R/simulate.ergm.R | 8 ergm-3.7.0/ergm/build/partial.rdb |binary ergm-3.7.0/ergm/build/vignette.rds |binary ergm-3.7.0/ergm/inst/NEWS.Rd | 104 + ergm-3.7.0/ergm/inst/doc/ergm.R | 2 ergm-3.7.0/ergm/inst/doc/ergm.Rnw | 2 ergm-3.7.0/ergm/inst/doc/ergm.pdf |binary ergm-3.7.0/ergm/inst/include/MCMC.h | 2 ergm-3.7.0/ergm/inst/include/MHproposal.h | 2 ergm-3.7.0/ergm/inst/include/changestat.h | 5 ergm-3.7.0/ergm/inst/include/edgelist.h | 2 ergm-3.7.0/ergm/inst/include/edgetree.h | 4 ergm-3.7.0/ergm/inst/include/ergm_stubs.c | 18 ergm-3.7.0/ergm/inst/include/model.h | 2 ergm-3.7.0/ergm/inst/include/wtMCMC.h | 2 ergm-3.7.0/ergm/inst/include/wtMHproposal.h | 2 ergm-3.7.0/ergm/inst/include/wtchangestat.h | 4 ergm-3.7.0/ergm/inst/include/wtedgetree.h | 2 ergm-3.7.0/ergm/inst/include/wtmodel.h | 2 ergm-3.7.0/ergm/man/MHproposal.Rd | 2 ergm-3.7.0/ergm/man/approx.hotelling.diff.test.Rd | 60 - ergm-3.7.0/ergm/man/as.edgelist.Rd | 9 ergm-3.7.0/ergm/man/check.ErgmTerm.Rd | 9 ergm-3.7.0/ergm/man/degreedist.Rd | 9 ergm-3.7.0/ergm/man/enformulate.curved.Rd | 2 ergm-3.7.0/ergm/man/ergm-MetropolisHastingsProposals.Rd | 9 ergm-3.7.0/ergm/man/ergm-terms.Rd | 121 +- ergm-3.7.0/ergm/man/ergm.ConstraintImplication.Rd | 2 ergm-3.7.0/ergm/man/ergm.Cprepare.Rd | 9 ergm-3.7.0/ergm/man/ergm.MHP.table.Rd | 2 ergm-3.7.0/ergm/man/ergm.bounddeg.Rd | 9 ergm-3.7.0/ergm/man/ergm.degeneracy.Rd | 9 ergm-3.7.0/ergm/man/ergm.eta.Rd | 9 ergm-3.7.0/ergm/man/ergm.geodistdist.Rd | 9 ergm-3.7.0/ergm/man/ergm.getMCMCsample.Rd | 9 ergm-3.7.0/ergm/man/ergm.getglobalstats.Rd | 9 ergm-3.7.0/ergm/man/ergm.init.methods.Rd | 2 ergm-3.7.0/ergm/man/ergm.mple.Rd | 9 ergm-3.7.0/ergm/man/ergmMPLE.Rd | 9 ergm-3.7.0/ergm/man/ergm_deprecated.Rd | 9 ergm-3.7.0/ergm/man/ergm_formula_utils.Rd | 9 ergm-3.7.0/ergm/man/faux.desert.high.Rd | 216 +-- ergm-3.7.0/ergm/man/faux.dixon.high.Rd | 216 +-- ergm-3.7.0/ergm/man/fix.curved.Rd | 2 ergm-3.7.0/ergm/man/get.free.dyads.Rd | 9 ergm-3.7.0/ergm/man/get.node.attr.Rd | 9 ergm-3.7.0/ergm/man/gof.ergm.Rd | 8 ergm-3.7.0/ergm/man/is.durational.Rd | 9 ergm-3.7.0/ergm/man/mcmc.list_utils.Rd | 9 ergm-3.7.0/ergm/man/newnw.extract.Rd | 9 ergm-3.7.0/ergm/man/nvattr.copy.network.Rd | 9 ergm-3.7.0/ergm/man/search.ergmTerms.Rd | 9 ergm-3.7.0/ergm/man/standardize.network.Rd | 9 ergm-3.7.0/ergm/man/vcov.ergm.Rd | 104 - ergm-3.7.0/ergm/src/CD.c | 14 ergm-3.7.0/ergm/src/CD.h | 9 ergm-3.7.0/ergm/src/MCMC.c | 2 ergm-3.7.0/ergm/src/MCMC.h | 2 ergm-3.7.0/ergm/src/MHproposal.c | 2 ergm-3.7.0/ergm/src/MHproposal.h | 2 ergm-3.7.0/ergm/src/MHproposals.c | 2 ergm-3.7.0/ergm/src/MHproposals.h | 2 ergm-3.7.0/ergm/src/MHproposals_bipartite.c | 2 ergm-3.7.0/ergm/src/MHproposals_bipartite.h | 2 ergm-3.7.0/ergm/src/MHproposals_block.c | 2 ergm-3.7.0/ergm/src/MHproposals_block.h | 2 ergm-3.7.0/ergm/src/MHproposals_degree.c | 2 ergm-3.7.0/ergm/src/MHproposals_degree.h | 2 ergm-3.7.0/ergm/src/MPLE.c | 2 ergm-3.7.0/ergm/src/MPLE.h | 2 ergm-3.7.0/ergm/src/MPLEconddeg.c | 2 ergm-3.7.0/ergm/src/MPLEconddeg.h | 2 ergm-3.7.0/ergm/src/SAN.c | 2 ergm-3.7.0/ergm/src/SAN.h | 2 ergm-3.7.0/ergm/src/allstatistics.c | 2 ergm-3.7.0/ergm/src/changestat.c | 2 ergm-3.7.0/ergm/src/changestat.h | 5 ergm-3.7.0/ergm/src/changestats.c | 89 - ergm-3.7.0/ergm/src/changestats.dgw_sp.c | 235 +--- ergm-3.7.0/ergm/src/changestats.dgw_sp.h | 9 ergm-3.7.0/ergm/src/changestats.h | 4 ergm-3.7.0/ergm/src/changestats_coincidence.c | 9 ergm-3.7.0/ergm/src/changestats_coincidence.h | 9 ergm-3.7.0/ergm/src/changestats_concurrentties.c | 9 ergm-3.7.0/ergm/src/changestats_concurrentties.h | 9 ergm-3.7.0/ergm/src/changestats_experimental.c | 9 ergm-3.7.0/ergm/src/changestats_experimental.h | 9 ergm-3.7.0/ergm/src/changestats_homoproportion.c | 9 ergm-3.7.0/ergm/src/changestats_homoproportion.h | 9 ergm-3.7.0/ergm/src/changestats_indices.c | 9 ergm-3.7.0/ergm/src/changestats_indices.h | 9 ergm-3.7.0/ergm/src/changestats_internal.c | 9 ergm-3.7.0/ergm/src/changestats_internal.h | 9 ergm-3.7.0/ergm/src/changestats_transitiveties.c | 9 ergm-3.7.0/ergm/src/changestats_transitiveties.h | 9 ergm-3.7.0/ergm/src/conddegmple.c | 2 ergm-3.7.0/ergm/src/conddegmple.h | 2 ergm-3.7.0/ergm/src/edgelist.c | 2 ergm-3.7.0/ergm/src/edgelist.h | 2 ergm-3.7.0/ergm/src/edgetree.c | 2 ergm-3.7.0/ergm/src/edgetree.h | 2 ergm-3.7.0/ergm/src/geodist.c | 2 ergm-3.7.0/ergm/src/geodist.h | 2 ergm-3.7.0/ergm/src/model.c | 2 ergm-3.7.0/ergm/src/model.h | 2 ergm-3.7.0/ergm/src/netstats.c | 2 ergm-3.7.0/ergm/src/netstats.h | 2 ergm-3.7.0/ergm/src/wtCD.c | 14 ergm-3.7.0/ergm/src/wtCD.h | 9 ergm-3.7.0/ergm/src/wtMCMC.c | 2 ergm-3.7.0/ergm/src/wtMCMC.h | 2 ergm-3.7.0/ergm/src/wtMHproposal.c | 2 ergm-3.7.0/ergm/src/wtMHproposal.h | 2 ergm-3.7.0/ergm/src/wtMHproposals.c | 2 ergm-3.7.0/ergm/src/wtMHproposals.h | 2 ergm-3.7.0/ergm/src/wtSAN.c | 2 ergm-3.7.0/ergm/src/wtSAN.h | 2 ergm-3.7.0/ergm/src/wtchangestat.h | 4 ergm-3.7.0/ergm/src/wtchangestats.c | 81 + ergm-3.7.0/ergm/src/wtchangestats.h | 6 ergm-3.7.0/ergm/src/wtedgetree.c | 2 ergm-3.7.0/ergm/src/wtedgetree.h | 2 ergm-3.7.0/ergm/src/wtmodel.c | 2 ergm-3.7.0/ergm/src/wtmodel.h | 2 ergm-3.7.0/ergm/src/wtnetstats.c | 2 ergm-3.7.0/ergm/src/wtnetstats.h | 2 ergm-3.7.0/ergm/tests/constraint_generalized.R | 2 ergm-3.7.0/ergm/tests/ergm_term_doc_test.R | 9 ergm-3.7.0/ergm/tests/fix.curved.R | 4 ergm-3.7.0/ergm/tests/gw_sp_tests.R | 653 +++++------ ergm-3.7.0/ergm/tests/miss_tests.CD.R | 9 ergm-3.7.0/ergm/tests/parallel.R | 2 ergm-3.7.0/ergm/tests/requireNamespaceTest.R | 47 ergm-3.7.0/ergm/tests/runtime_diags.R | 2 ergm-3.7.0/ergm/tests/scoping.R | 2 ergm-3.7.0/ergm/tests/simpletests.R | 2 ergm-3.7.0/ergm/tests/steppingtest.R | 2 ergm-3.7.0/ergm/tests/stocapprox.R | 54 ergm-3.7.0/ergm/tests/target_offset.R | 51 ergm-3.7.0/ergm/tests/termTests.b12factor.R | 9 ergm-3.7.0/ergm/tests/termTests.b12nodematch.R | 9 ergm-3.7.0/ergm/tests/termTests.bipartite.R | 2 ergm-3.7.0/ergm/tests/termTests.directed.R | 2 ergm-3.7.0/ergm/tests/termTests.flexible.R | 38 ergm-3.7.0/ergm/tests/termTests.undirected.R | 2 ergm-3.7.0/ergm/tests/termTests.valued.R | 23 ergm-3.7.0/ergm/tests/testgflomiss.R | 2 ergm-3.7.0/ergm/tests/testgmonkmiss.R | 2 ergm-3.7.0/ergm/tests/utils_tests.R | 9 ergm-3.7.0/ergm/tests/valued_sim.R | 2 ergm-3.7.0/ergm/tests/valued_terms.R | 2 ergm-3.7.0/ergm/vignettes/ergm.Rnw | 2 187 files changed, 3106 insertions(+), 2225 deletions(-)
Title: Persist Attributes Across Data Operations
Description: In base R, object attributes are lost when objects are modified by
common data operations such as subset, filter, slice, append, extract
etc. This packages allows objects to be marked as 'sticky' and have
attributes persisted during these operations or when inserted
into or extracted from recursive (i.e. list- or table-like) objects.
Author: Christopher Brown [aut, cre],
Decision Patterns [cph]
Maintainer: Christopher Brown <chris.brown@decisionpatterns.com>
Diff between sticky versions 0.4.0 dated 2016-11-01 and 0.5.2 dated 2017-03-20
sticky-0.4.0/sticky/NEWS |only sticky-0.4.0/sticky/man/extract.Rd |only sticky-0.5.2/sticky/DESCRIPTION | 10 sticky-0.5.2/sticky/MD5 | 35 +- sticky-0.5.2/sticky/NAMESPACE | 2 sticky-0.5.2/sticky/NEWS.md |only sticky-0.5.2/sticky/R/extract1.R | 17 sticky-0.5.2/sticky/R/print.R | 2 sticky-0.5.2/sticky/R/sticky.R | 22 + sticky-0.5.2/sticky/README.md | 24 - sticky-0.5.2/sticky/build/vignette.rds |binary sticky-0.5.2/sticky/inst/doc/introduction.html | 331 +++++++++++++------ sticky-0.5.2/sticky/man/append.Rd | 1 sticky-0.5.2/sticky/man/extract1.Rd |only sticky-0.5.2/sticky/man/init.Rd | 3 sticky-0.5.2/sticky/man/print.sticky.Rd | 1 sticky-0.5.2/sticky/man/sticky.Rd | 9 sticky-0.5.2/sticky/man/subset.sticky.Rd | 3 sticky-0.5.2/sticky/tests/testthat/test-data.table.r | 9 sticky-0.5.2/sticky/tests/testthat/test-matrix.r | 12 sticky-0.5.2/sticky/tests/testthat/test-sticky_all.r |only 21 files changed, 329 insertions(+), 152 deletions(-)
Title: Some Additional Distributions
Description: Provides the density, distribution, quantile and generation
functions of some obscure probability distributions, including the doubly non-
central t, F, Beta, and Eta distributions; the lambda-prime and K-prime; the
upsilon distribution; the (weighted) sum of non-central chi-squares to a power;
the (weighted) sum of log non-central chi-squares; the product of non-central
chi-squares to powers; the product of doubly non-central F variables; the
product of independent normals.
Author: Steven E. Pav [aut, cre]
Maintainer: Steven E. Pav <shabbychef@gmail.com>
Diff between sadists versions 0.2.2 dated 2016-03-03 and 0.2.3 dated 2017-03-20
ChangeLog |only DESCRIPTION | 21 ++++++++--------- MD5 | 39 ++++++++++++++++++++++--------- NAMESPACE | 4 +++ R/prodnormal.r |only R/sadists.r | 11 +++++++- R/utils.r | 1 README.md | 54 +++++++++++++++++++++++++++++--------------- build/vignette.rds |binary inst/doc/sadists.R | 12 +++++++-- inst/doc/sadists.Rnw | 30 +++++++++++++++++++++--- inst/doc/sadists.pdf |binary man/NEWS.Rd | 13 ++++++++-- man/dprodnormal.Rd |only tests/testthat/test-basic.r | 8 ++++++ tools |only vignettes/sadists.Rnw | 30 +++++++++++++++++++++--- 17 files changed, 168 insertions(+), 55 deletions(-)
Title: Analysing Remotely Sensed Forest Data
Description: Forest Tools provides functions for analyzing remotely sensed forest data.
Author: Andrew Plowright
Maintainer: Andrew Plowright <andrew.plowright@alumni.ubc.ca>
Diff between ForestTools versions 0.1.1 dated 2017-03-06 and 0.1.2 dated 2017-03-20
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++++++++---- NEWS.md | 4 ++++ R/Quesnel.R |only build/vignette.rds |binary data/datalist |only data/quesnelBlocks.rda |only data/quesnelCHM.rda |only data/quesnelTrees.rda |only inst/doc/inventoryAttributes.R |only inst/doc/inventoryAttributes.Rmd |only inst/doc/inventoryAttributes.html |only inst/doc/treetopAnalysis.html | 16 ++++++++-------- man/quesnelBlocks.Rd |only man/quesnelCHM.Rd |only man/quesnelTrees.Rd |only vignettes/inventoryAttributes.Rmd |only 17 files changed, 32 insertions(+), 16 deletions(-)
Title: Waveband Definitions for UV, VIS, and IR Radiation
Description: Constructors of waveband objects for commonly used biological
spectral weighting functions (BSWFs) and for different wavebands describing
named ranges of wavelengths in the ultraviolet (UV), visible (VIS)
and infrared (IR) regions of the electromagnetic spectrum.
Author: Pedro J. Aphalo [aut, cre],
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyWavebands versions 0.4.1 dated 2016-08-01 and 0.4.2 dated 2017-03-20
photobiologyWavebands-0.4.1/photobiologyWavebands/inst/doc/dataplotswb.pdf |only photobiologyWavebands-0.4.1/photobiologyWavebands/inst/doc/user-guide.Rnw |only photobiologyWavebands-0.4.1/photobiologyWavebands/inst/doc/user-guide.pdf |only photobiologyWavebands-0.4.1/photobiologyWavebands/inst/doc/userguideWB.pdf |only photobiologyWavebands-0.4.1/photobiologyWavebands/vignettes/user-guide.Rnw |only photobiologyWavebands-0.4.2/photobiologyWavebands/DESCRIPTION | 24 - photobiologyWavebands-0.4.2/photobiologyWavebands/MD5 | 224 +++++----- photobiologyWavebands-0.4.2/photobiologyWavebands/NAMESPACE | 21 photobiologyWavebands-0.4.2/photobiologyWavebands/NEWS | 30 + photobiologyWavebands-0.4.2/photobiologyWavebands/R/blue.r | 24 - photobiologyWavebands-0.4.2/photobiologyWavebands/R/cie.e.fun.r | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/R/cie.q.fun.r | 4 photobiologyWavebands-0.4.2/photobiologyWavebands/R/cie.r | 2 photobiologyWavebands-0.4.2/photobiologyWavebands/R/dna.gm.q.fun.r | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/R/dna.gm.r | 4 photobiologyWavebands-0.4.2/photobiologyWavebands/R/dna.n.q.fun.r | 2 photobiologyWavebands-0.4.2/photobiologyWavebands/R/dna.n.r | 4 photobiologyWavebands-0.4.2/photobiologyWavebands/R/dna.p.q.fun.r | 4 photobiologyWavebands-0.4.2/photobiologyWavebands/R/dna.p.r | 4 photobiologyWavebands-0.4.2/photobiologyWavebands/R/far.red.r | 31 - photobiologyWavebands-0.4.2/photobiologyWavebands/R/flav.q.fun.r | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/R/flav.r | 2 photobiologyWavebands-0.4.2/photobiologyWavebands/R/gen.g.q.fun.r | 2 photobiologyWavebands-0.4.2/photobiologyWavebands/R/gen.g.r | 4 photobiologyWavebands-0.4.2/photobiologyWavebands/R/gen.m.q.fun.r | 5 photobiologyWavebands-0.4.2/photobiologyWavebands/R/gen.m.r | 4 photobiologyWavebands-0.4.2/photobiologyWavebands/R/gen.t.q.fun.r | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/R/gen.t.r | 4 photobiologyWavebands-0.4.2/photobiologyWavebands/R/green.r | 25 - photobiologyWavebands-0.4.2/photobiologyWavebands/R/icnirp.e.fun.r | 2 photobiologyWavebands-0.4.2/photobiologyWavebands/R/icnirp.r | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/R/ir.bands.r |only photobiologyWavebands-0.4.2/photobiologyWavebands/R/ir.r |only photobiologyWavebands-0.4.2/photobiologyWavebands/R/landsat.bands.r |only photobiologyWavebands-0.4.2/photobiologyWavebands/R/meth.e.fun.r | 2 photobiologyWavebands-0.4.2/photobiologyWavebands/R/meth.q.fun.r | 2 photobiologyWavebands-0.4.2/photobiologyWavebands/R/meth.r | 2 photobiologyWavebands-0.4.2/photobiologyWavebands/R/orange.r | 10 photobiologyWavebands-0.4.2/photobiologyWavebands/R/par.r | 10 photobiologyWavebands-0.4.2/photobiologyWavebands/R/pg.q.fun.r | 2 photobiologyWavebands-0.4.2/photobiologyWavebands/R/pg.r | 2 photobiologyWavebands-0.4.2/photobiologyWavebands/R/photobiologyWavebands.R | 41 + photobiologyWavebands-0.4.2/photobiologyWavebands/R/plant.bands.r | 22 photobiologyWavebands-0.4.2/photobiologyWavebands/R/purple.r | 14 photobiologyWavebands-0.4.2/photobiologyWavebands/R/red.r | 41 + photobiologyWavebands-0.4.2/photobiologyWavebands/R/uv.bands.r | 19 photobiologyWavebands-0.4.2/photobiologyWavebands/R/uv.r | 9 photobiologyWavebands-0.4.2/photobiologyWavebands/R/uva.r | 46 +- photobiologyWavebands-0.4.2/photobiologyWavebands/R/uvb.r | 24 - photobiologyWavebands-0.4.2/photobiologyWavebands/R/uvc.r | 18 photobiologyWavebands-0.4.2/photobiologyWavebands/R/uvi.wb.r | 2 photobiologyWavebands-0.4.2/photobiologyWavebands/R/vis.bands.r | 13 photobiologyWavebands-0.4.2/photobiologyWavebands/R/vis.r | 25 - photobiologyWavebands-0.4.2/photobiologyWavebands/R/yellow.r | 10 photobiologyWavebands-0.4.2/photobiologyWavebands/README.md | 10 photobiologyWavebands-0.4.2/photobiologyWavebands/build/vignette.rds |binary photobiologyWavebands-0.4.2/photobiologyWavebands/inst/CITATION |only photobiologyWavebands-0.4.2/photobiologyWavebands/inst/doc/user-guide.R | 51 +- photobiologyWavebands-0.4.2/photobiologyWavebands/inst/doc/user-guide.Rmd |only photobiologyWavebands-0.4.2/photobiologyWavebands/inst/doc/user-guide.html |only photobiologyWavebands-0.4.2/photobiologyWavebands/inst/staticdocs/README.md |only photobiologyWavebands-0.4.2/photobiologyWavebands/inst/staticdocs/index.r | 17 photobiologyWavebands-0.4.2/photobiologyWavebands/man/Blue.Rd | 18 photobiologyWavebands-0.4.2/photobiologyWavebands/man/CH4.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/CH4_e_fun.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/CH4_q_fun.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/CIE.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/CIE1924_lef.spct.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/CIE1951_scotopic_lef.spct.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/CIE2008_lef2deg.spct.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/CIE_e_fun.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/CIE_q_fun.Rd | 2 photobiologyWavebands-0.4.2/photobiologyWavebands/man/DNA.GM.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/DNA.N.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/DNA.P.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/DNA_GM.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/DNA_GM_q_fun.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/DNA_N.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/DNA_N_q_fun.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/DNA_P.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/DNA_P_q_fun.Rd | 2 photobiologyWavebands-0.4.2/photobiologyWavebands/man/FLAV.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/FLAV_q_fun.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/Far_red.Rd | 15 photobiologyWavebands-0.4.2/photobiologyWavebands/man/GEN.G.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/GEN.M.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/GEN.T.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/GEN_G.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/GEN_G_q_fun.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/GEN_M.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/GEN_M_q_fun.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/GEN_T.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/GEN_T_q_fun.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/Green.Rd | 15 photobiologyWavebands-0.4.2/photobiologyWavebands/man/ICNIRP.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/ICNIRP_e_fun.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/IR.Rd |only photobiologyWavebands-0.4.2/photobiologyWavebands/man/IR_bands.Rd |only photobiologyWavebands-0.4.2/photobiologyWavebands/man/Landsat_bands.Rd |only photobiologyWavebands-0.4.2/photobiologyWavebands/man/Orange.Rd | 10 photobiologyWavebands-0.4.2/photobiologyWavebands/man/PAR.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/PG.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/PG_q_fun.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/Plant_bands.Rd | 13 photobiologyWavebands-0.4.2/photobiologyWavebands/man/Purple.Rd | 12 photobiologyWavebands-0.4.2/photobiologyWavebands/man/Red.Rd | 13 photobiologyWavebands-0.4.2/photobiologyWavebands/man/SetlowTUV.spct.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/UV.Rd | 11 photobiologyWavebands-0.4.2/photobiologyWavebands/man/UVA.Rd | 22 photobiologyWavebands-0.4.2/photobiologyWavebands/man/UVB.Rd | 10 photobiologyWavebands-0.4.2/photobiologyWavebands/man/UVC.Rd | 10 photobiologyWavebands-0.4.2/photobiologyWavebands/man/UVI.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/UVI_wb.Rd | 3 photobiologyWavebands-0.4.2/photobiologyWavebands/man/UV_bands.Rd | 11 photobiologyWavebands-0.4.2/photobiologyWavebands/man/VIS.Rd | 17 photobiologyWavebands-0.4.2/photobiologyWavebands/man/VIS_bands.Rd | 8 photobiologyWavebands-0.4.2/photobiologyWavebands/man/Yellow.Rd | 10 photobiologyWavebands-0.4.2/photobiologyWavebands/man/photobiologyWavebands-package.Rd | 66 ++ photobiologyWavebands-0.4.2/photobiologyWavebands/man/photopic_sensitivity.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/man/scotopic_sensitivity.Rd | 1 photobiologyWavebands-0.4.2/photobiologyWavebands/vignettes/user-guide.Rmd |only 121 files changed, 685 insertions(+), 488 deletions(-)
More information about photobiologyWavebands at CRAN
Permanent link
Title: Component-Wise MOEA/D Implementation
Description: Modular implementation of Multiobjective Evolutionary Algorithms
based on Decomposition (MOEA/D) [Zhang and Li (2007),
<DOI:10.1109/TEVC.2007.892759>] for quick assembling and
testing of new algorithmic components, as well as easy
replication of published MOEA/D proposals.
Author: Felipe Campelo [aut, cre],
Lucas Batista [com],
Claus Aranha [aut]
Maintainer: Felipe Campelo <fcampelo@ufmg.br>
Diff between MOEADr versions 0.2.0 dated 2017-03-16 and 0.2.1 dated 2017-03-20
DESCRIPTION | 32 ++++++++++++++----------- MD5 | 9 ++++--- NEWS.md |only README.md | 45 +++++++++++++++++++++++++++++++++++- tests/testthat/test_decomposition.R | 24 ++++++++----------- tests/testthat/test_scalarization.R | 1 6 files changed, 79 insertions(+), 32 deletions(-)
Title: Evidential Distance-Based Classification
Description: Different evidential distance-based classifiers, which provide
outputs in the form of Dempster-Shafer mass functions. The methods are: the
evidential K-nearest neighbor rule and the evidential neural network.
Author: Thierry Denoeux
Maintainer: Thierry Denoeux <tdenoeux@utc.fr>
Diff between evclass versions 1.1.0 dated 2016-07-01 and 1.1.1 dated 2017-03-20
DESCRIPTION | 10 +++---- MD5 | 46 +++++++++++++++++------------------ R/EkNNfit.R | 6 ++-- R/EkNNinit.R | 4 +-- R/EkNNval.R | 12 ++++----- R/proDSfit.R | 4 +-- R/proDSinit.R | 4 +-- R/proDSval.R | 5 ++- build/vignette.rds |binary inst/doc/Introduction.R | 2 - inst/doc/Introduction.Rmd | 2 - inst/doc/Introduction.html | 59 ++++++++++++++++++++++----------------------- man/EkNNfit.Rd | 11 +++----- man/EkNNinit.Rd | 9 +++--- man/EkNNval.Rd | 13 ++++----- man/decision.Rd | 7 ++--- man/evclass.Rd | 1 man/glass.Rd | 1 man/ionosphere.Rd | 1 man/proDSfit.Rd | 9 +++--- man/proDSinit.Rd | 9 +++--- man/proDSval.Rd | 9 +++--- man/vehicles.Rd | 1 vignettes/Introduction.Rmd | 2 - 24 files changed, 108 insertions(+), 119 deletions(-)
Title: Circle Manhattan Plot
Description: Manhattan plot, a type of scatter plot, was widely used to display the association results. However, it is usually time-consuming and laborious for a
non-specialist user to write scripts and adjust parameters of an elaborate plot. Moreover, the ever-growing traits measured have necessitated the
integration of results from different Genome-wide association study researches. Circle Manhattan Plot is the first open R package that can lay out
Genome-wide association study P-value results in both traditional rectangular patterns, QQ-plot and novel circular ones. United in only one bull's eye style
plot, association results from multiple traits can be compared interactively, thereby to reveal both similarities and differences between signals.
Author: LiLin-Yin
Maintainer: LiLin-Yin <ylilin@163.com>
Diff between CMplot versions 3.1.4 dated 2016-07-13 and 3.2.0 dated 2017-03-20
DESCRIPTION | 8 MD5 | 8 NAMESPACE | 4 R/CMplot.r | 1111 ++++++++++++++++++++++++-------------------------- man/CMplot-package.Rd | 34 - 5 files changed, 580 insertions(+), 585 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-29 0.4
2014-11-23 0.2