Wed, 12 Apr 2017

Package SSN updated to version 1.1.10 with previous version 1.1.9 dated 2017-03-25

Title: Spatial Modeling on Stream Networks
Description: Spatial statistical modeling and prediction for data on stream networks, including models based on in-stream distance. Models are created using moving average constructions. Spatial linear models, including explanatory variables, can be fit with (restricted) maximum likelihood. Mapping and other graphical functions are included.
Author: Jay Ver Hoef and Erin Peterson
Maintainer: Jay Ver Hoef <ver.hoef@SpatialStreamNetworks.com>

Diff between SSN versions 1.1.9 dated 2017-03-25 and 1.1.10 dated 2017-04-12

 DESCRIPTION        |   14 -
 MD5                |   12 -
 R/importPredpts.R  |  152 ++++++++++-----------
 R/importSSN.R      |  382 ++++++++++++++++++++++++++---------------------------
 data/mf04.rda      |binary
 data/mf04p.rda     |binary
 data/modelFits.rda |binary
 7 files changed, 280 insertions(+), 280 deletions(-)

More information about SSN at CRAN
Permanent link

New package rarhsmm with initial version 1.0.1
Package: rarhsmm
Type: Package
Title: Regularized Autoregressive Hidden Semi Markov Model
Version: 1.0.1
Date: 2017-04-13
Author: Zekun (Jack) Xu, Ye Liu
Maintainer: Zekun Xu <zekunxu@gmail.com>
Description: Fit Gaussian hidden Markov (or semi-Markov) models with / without autoregressive coefficients and with / without regularization. The fitting algorithm for the hidden Markov model is illustrated by Rabiner (1989) <doi:10.1109/5.18626>. The shrinkage estimation on the covariance matrices is based on the graphical lasso method by Freedman (2007) <doi:10.1093/biostatistics/kxm045>. The shrinkage estimation on the autoregressive coefficients uses the elastic net shrinkage detailed in Zou (2005) <doi:10.1111/j.1467-9868.2005.00503.x>.
Depends: R(>= 3.0.0)
License: GPL
LazyData: TRUE
Imports: glmnet
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-04-12 15:53:57 UTC; xuzekun
Repository: CRAN
Date/Publication: 2017-04-12 23:16:50 UTC

More information about rarhsmm at CRAN
Permanent link

New package R2ucare with initial version 1.0.0
Package: R2ucare
Maintainer: Olivier Gimenez <olivier.gimenez@cefe.cnrs.fr>
License: GPL (>= 2)
Title: Goodness-of-Fit Tests for Capture-Recapture Models
Author: Olivier Gimenez, Jean-Dominique Lebreton, Remi Choquet, Roger Pradel
Description: Performs goodness-of-fit tests for capture-recapture models. Also contains several functions to process capture-recapture data.
Version: 1.0.0
URL: https://github.com/oliviergimenez/R2ucare
Depends: R (>= 3.3.0)
Suggests: knitr, rmarkdown
Imports: stringr, RMark, stats, utils
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1.9000
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-04-12 22:11:13 UTC; gimenez
Repository: CRAN
Date/Publication: 2017-04-13 00:09:48 UTC

More information about R2ucare at CRAN
Permanent link

Package zoo updated to version 1.8-0 with previous version 1.7-14 dated 2016-12-16

Title: S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations)
Description: An S3 class with methods for totally ordered indexed observations. It is particularly aimed at irregular time series of numeric vectors/matrices and factors. zoo's key design goals are independence of a particular index/date/time class and consistency with ts and base R by providing methods to extend standard generics.
Author: Achim Zeileis [aut, cre], Gabor Grothendieck [aut], Jeffrey A. Ryan [aut], Joshua M. Ulrich [ctb], Felix Andrews [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>

Diff between zoo versions 1.7-14 dated 2016-12-16 and 1.8-0 dated 2017-04-12

 DESCRIPTION                     |   10 +++--
 MD5                             |   60 +++++++++++++++++----------------
 NAMESPACE                       |    1 
 NEWS                            |   21 +++++++++++
 R/as.zoo.R                      |    2 -
 R/na.approx.R                   |    3 +
 R/na.locf.R                     |   46 +++++++++++++++----------
 R/read.zoo.R                    |    4 +-
 R/rollmean.R                    |   18 ++++++----
 R/yearqtr.R                     |   45 +++++++++++++------------
 R/zoo.R                         |   12 +++++-
 R/zooreg.R                      |   10 ++++-
 build/vignette.rds              |binary
 inst/doc/zoo-design.pdf         |binary
 inst/doc/zoo-faq.pdf            |binary
 inst/doc/zoo-quickref.pdf       |binary
 inst/doc/zoo-read.pdf           |binary
 inst/doc/zoo.Rnw                |   72 ++++++++++++++++++++++------------------
 inst/doc/zoo.pdf                |binary
 man/as.zoo.Rd                   |    4 +-
 man/na.locf.Rd                  |   37 +++++++++++---------
 man/zoo.Rd                      |    6 ++-
 man/zooreg.Rd                   |    5 ++
 src/coredata.c                  |    3 +
 src/lag.c                       |    8 ++--
 tests/Examples/zoo-Ex.Rout.save |   29 ++++++++--------
 tests/na.locf.R                 |only
 tests/na.locf.Rout.save         |only
 tests/vignette-zoo.Rout.save    |   18 +++++-----
 vignettes/zoo-refcard-raw.tex   |    2 -
 vignettes/zoo.Rnw               |   72 ++++++++++++++++++++++------------------
 vignettes/zoo.bib               |   22 ++++++++++--
 32 files changed, 308 insertions(+), 202 deletions(-)

More information about zoo at CRAN
Permanent link

New package SeerMapperWest with initial version 1.2.0
Package: SeerMapperWest
Type: Package
Version: 1.2.0
Date: 2017-04-12
Title: Supplemental U.S. 2000 Census Tract Boundaries for 14 Western States without Seer Registries for 'SeerMapper'
Author: "Jim Pearson" <jpearson@statnetconsulting.com> with data provided by "U. S. Census Bureau" <geo.tiger@census.gov>
Maintainer: "Jim Pearson" <jpearson@statnetconsulting.com>
Depends: R (>= 3.2.0)
Imports: sp
Suggests:
Description: Provides supplemental 2000 census tract boundaries for the 14 states without Seer Registries that are west of the Mississippi river for use with the 'SeerMapper' package. The data contained in this package is derived from U. S. Census data and is in the public domain.
License: GPL (>= 2)
LazyData: no
LazyLoad: no
BuildResaveData: yes
ByteCompile: yes
NeedsCompilation: no
Packaged: 2017-04-12 19:43:55 UTC; jpearson
Repository: CRAN
Date/Publication: 2017-04-12 23:10:58 UTC

More information about SeerMapperWest at CRAN
Permanent link

New package cbanalysis with initial version 0.1.0
Package: cbanalysis
Type: Package
Title: Coffee Break Descriptive Analysis
Version: 0.1.0
Authors@R: person("Sandip Kumar", "Gupta", email = "sandip_nitj@yahoo.co.in", role = c("aut", "cre"))
Maintainer: Sandip Kumar Gupta <sandip_nitj@yahoo.co.in>
Description: Contains function which subsets the input data frame based on the variable types and returns list of data frames.
License: GPL-2
LazyData: TRUE
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-04-12 17:22:51 UTC; Sandip
Author: Sandip Kumar Gupta [aut, cre]
Repository: CRAN
Date/Publication: 2017-04-12 23:08:42 UTC

More information about cbanalysis at CRAN
Permanent link

Package spBayes updated to version 0.4-0 with previous version 0.3-9 dated 2015-01-27

Title: Univariate and Multivariate Spatial-Temporal Modeling
Description: Fits univariate and multivariate spatio-temporal random effects models for point-referenced data using Markov chain Monte Carlo (MCMC). Details are given in Finley, Banerjee, and Gelfand (2015; <doi:10.18637/jss.v063.i13>) and Finley, Banerjee, and Cook (2014; <doi:10.1111/2041-210X.12189>).
Author: Andrew O. Finley <finleya@msu.edu>, Sudipto Banerjee <sudiptob@biostat.umn.edu>
Maintainer: Andrew Finley <finleya@msu.edu>

Diff between spBayes versions 0.3-9 dated 2015-01-27 and 0.4-0 dated 2017-04-12

 DESCRIPTION      |   16 ++++++++--------
 MD5              |   10 ++++++----
 NAMESPACE        |   10 +++++++++-
 inst/ChangeLog   |    7 ++++++-
 man/spPredict.Rd |    4 ++--
 src/init.cpp     |only
 src/spBayes.h    |only
 7 files changed, 31 insertions(+), 16 deletions(-)

More information about spBayes at CRAN
Permanent link

Package rpdo updated to version 0.2.2 with previous version 0.2.1 dated 2017-01-01

Title: Pacific Decadal Oscillation Index Data
Description: Monthly Pacific Decadal Oscillation (PDO) index values from January 1900 to February 2017. Includes download_pdo() to scrape the latest values from <http://research.jisao.washington.edu/pdo/PDO.latest>.
Author: Joe Thorley [aut, cre], Nathan Mantua [aut, dtc], Steven R. Hare [aut, dtc]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>

Diff between rpdo versions 0.2.1 dated 2017-01-01 and 0.2.2 dated 2017-04-12

 DESCRIPTION         |   16 ++++++++--------
 MD5                 |   13 +++++++------
 NEWS.md             |    6 +++++-
 README.md           |   46 +++++++++++++++++++++++++++-------------------
 data/pdo.rda        |binary
 man/download_pdo.Rd |    1 -
 man/pdo.Rd          |    1 -
 tools               |only
 8 files changed, 47 insertions(+), 36 deletions(-)

More information about rpdo at CRAN
Permanent link

Package rbhl updated to version 0.8.0 with previous version 0.3.0 dated 2016-12-22

Title: Interface to the 'Biodiversity' 'Heritage' Library
Description: Interface to 'Biodiversity' 'Heritage' Library ('BHL') (<http://www.biodiversitylibrary.org/>) 'API' (<http://www.biodiversitylibrary.org/api2/docs/docs.html>). 'BHL' is a repository of 'digitized' literature on 'biodiversity' studies, including 'floras', research papers, and more.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

Diff between rbhl versions 0.3.0 dated 2016-12-22 and 0.8.0 dated 2017-04-12

 rbhl-0.3.0/rbhl/R/bhl_getpartendnote.R                         |only
 rbhl-0.3.0/rbhl/R/bhl_gettitleendnote.R                        |only
 rbhl-0.3.0/rbhl/man/bhl_getpartendnote.Rd                      |only
 rbhl-0.3.0/rbhl/man/bhl_gettitleendNote.Rd                     |only
 rbhl-0.8.0/rbhl/DESCRIPTION                                    |   18 -
 rbhl-0.8.0/rbhl/LICENSE                                        |    2 
 rbhl-0.8.0/rbhl/MD5                                            |  177 +++++-----
 rbhl-0.8.0/rbhl/NAMESPACE                                      |    7 
 rbhl-0.8.0/rbhl/NEWS.md                                        |only
 rbhl-0.8.0/rbhl/R/bhl_authorsearch.R                           |    3 
 rbhl-0.8.0/rbhl/R/bhl_bioherlib.R                              |   34 +
 rbhl-0.8.0/rbhl/R/bhl_booksearch.R                             |   17 
 rbhl-0.8.0/rbhl/R/bhl_getauthorparts.R                         |    4 
 rbhl-0.8.0/rbhl/R/bhl_getauthortitles.R                        |    4 
 rbhl-0.8.0/rbhl/R/bhl_getcollections.R                         |   18 -
 rbhl-0.8.0/rbhl/R/bhl_getitembyidentifier.R                    |   15 
 rbhl-0.8.0/rbhl/R/bhl_getitemmetadata.R                        |   25 -
 rbhl-0.8.0/rbhl/R/bhl_getitempages.R                           |   10 
 rbhl-0.8.0/rbhl/R/bhl_getitemparts.R                           |    4 
 rbhl-0.8.0/rbhl/R/bhl_getlanguages.R                           |    6 
 rbhl-0.8.0/rbhl/R/bhl_getpagemetadata.R                        |   14 
 rbhl-0.8.0/rbhl/R/bhl_getpagenames.R                           |    7 
 rbhl-0.8.0/rbhl/R/bhl_getpartbibtex.R                          |    3 
 rbhl-0.8.0/rbhl/R/bhl_getpartbyidentifier.R                    |   12 
 rbhl-0.8.0/rbhl/R/bhl_getpartmetadata.R                        |    8 
 rbhl-0.8.0/rbhl/R/bhl_getpartnames.R                           |    7 
 rbhl-0.8.0/rbhl/R/bhl_getsubjectparts.R                        |    8 
 rbhl-0.8.0/rbhl/R/bhl_gettitlebyidentifier.R                   |   15 
 rbhl-0.8.0/rbhl/R/bhl_gettitlemetadata.R                       |    8 
 rbhl-0.8.0/rbhl/R/bhl_getunpublisheditems.R                    |    6 
 rbhl-0.8.0/rbhl/R/bhl_getunpublishedparts.R                    |   10 
 rbhl-0.8.0/rbhl/R/bhl_getunpublishedtitles.R                   |    7 
 rbhl-0.8.0/rbhl/R/bhl_namecount.R                              |    6 
 rbhl-0.8.0/rbhl/R/bhl_namegetdetail.R                          |   11 
 rbhl-0.8.0/rbhl/R/bhl_namelist.R                               |   22 -
 rbhl-0.8.0/rbhl/R/bhl_namesearch.R                             |    3 
 rbhl-0.8.0/rbhl/R/bhl_openurl.R                                |   23 -
 rbhl-0.8.0/rbhl/R/bhl_partsearch.R                             |   28 -
 rbhl-0.8.0/rbhl/R/bhl_subjectsearch.R                          |    7 
 rbhl-0.8.0/rbhl/R/bhl_titlesearchsimple.R                      |    6 
 rbhl-0.8.0/rbhl/R/getpages.R                                   |    8 
 rbhl-0.8.0/rbhl/R/rbhl-package.R                               |   19 -
 rbhl-0.8.0/rbhl/R/zzz.R                                        |   20 -
 rbhl-0.8.0/rbhl/README.md                                      |    7 
 rbhl-0.8.0/rbhl/build/vignette.rds                             |binary
 rbhl-0.8.0/rbhl/inst/vign/rbhl_vignette.md                     |    4 
 rbhl-0.8.0/rbhl/man/bhl_authorsearch.Rd                        |   18 -
 rbhl-0.8.0/rbhl/man/bhl_bioherlib.Rd                           |   28 -
 rbhl-0.8.0/rbhl/man/bhl_booksearch.Rd                          |   32 -
 rbhl-0.8.0/rbhl/man/bhl_getauthorparts.Rd                      |   14 
 rbhl-0.8.0/rbhl/man/bhl_getauthortitles.Rd                     |   18 -
 rbhl-0.8.0/rbhl/man/bhl_getcollections.Rd                      |   14 
 rbhl-0.8.0/rbhl/man/bhl_getinstitutions.Rd                     |   14 
 rbhl-0.8.0/rbhl/man/bhl_getitembyidentifier.Rd                 |   25 -
 rbhl-0.8.0/rbhl/man/bhl_getitemmetadata.Rd                     |   24 -
 rbhl-0.8.0/rbhl/man/bhl_getitempages.Rd                        |   16 
 rbhl-0.8.0/rbhl/man/bhl_getitemparts.Rd                        |   14 
 rbhl-0.8.0/rbhl/man/bhl_getlanguages.Rd                        |   14 
 rbhl-0.8.0/rbhl/man/bhl_getpagemetadata.Rd                     |   18 -
 rbhl-0.8.0/rbhl/man/bhl_getpagenames.Rd                        |   14 
 rbhl-0.8.0/rbhl/man/bhl_getpageocrtext.Rd                      |   14 
 rbhl-0.8.0/rbhl/man/bhl_getpartbibtex.Rd                       |   17 
 rbhl-0.8.0/rbhl/man/bhl_getpartbyidentifier.Rd                 |   17 
 rbhl-0.8.0/rbhl/man/bhl_getpartmetadata.Rd                     |    9 
 rbhl-0.8.0/rbhl/man/bhl_getpartnames.Rd                        |   17 
 rbhl-0.8.0/rbhl/man/bhl_getsubjectparts.Rd                     |   14 
 rbhl-0.8.0/rbhl/man/bhl_getsubjecttitles.Rd                    |   14 
 rbhl-0.8.0/rbhl/man/bhl_gettitlebibTex.Rd                      |   14 
 rbhl-0.8.0/rbhl/man/bhl_gettitlebyidentifier.Rd                |   23 -
 rbhl-0.8.0/rbhl/man/bhl_gettitleitems.Rd                       |   14 
 rbhl-0.8.0/rbhl/man/bhl_gettitlemetadata.Rd                    |   14 
 rbhl-0.8.0/rbhl/man/bhl_getunpublisheditems.Rd                 |   14 
 rbhl-0.8.0/rbhl/man/bhl_getunpublishedparts.Rd                 |   20 -
 rbhl-0.8.0/rbhl/man/bhl_getunpublishedtitles.Rd                |   14 
 rbhl-0.8.0/rbhl/man/bhl_namecount.Rd                           |   18 -
 rbhl-0.8.0/rbhl/man/bhl_namegetdetail.Rd                       |   25 -
 rbhl-0.8.0/rbhl/man/bhl_namelist.Rd                            |   31 -
 rbhl-0.8.0/rbhl/man/bhl_namesearch.Rd                          |   14 
 rbhl-0.8.0/rbhl/man/bhl_openurl.Rd                             |   17 
 rbhl-0.8.0/rbhl/man/bhl_partsearch.Rd                          |   28 -
 rbhl-0.8.0/rbhl/man/bhl_subjectsearch.Rd                       |   18 -
 rbhl-0.8.0/rbhl/man/bhl_titlesearchsimple.Rd                   |   18 -
 rbhl-0.8.0/rbhl/man/getpages.Rd                                |    3 
 rbhl-0.8.0/rbhl/man/rbhl-defunct.Rd                            |only
 rbhl-0.8.0/rbhl/man/rbhl-package.Rd                            |    7 
 rbhl-0.8.0/rbhl/man/rbhlmethods.Rd                             |    1 
 rbhl-0.8.0/rbhl/tests/testthat/test-bhl_gettitleitems.R        |only
 rbhl-0.8.0/rbhl/tests/testthat/test-bhl_gettitlemetadata.R     |only
 rbhl-0.8.0/rbhl/tests/testthat/test-bhl_getunpublisheditems.R  |only
 rbhl-0.8.0/rbhl/tests/testthat/test-bhl_getunpublishedparts.R  |only
 rbhl-0.8.0/rbhl/tests/testthat/test-bhl_getunpublishedtitles.R |only
 rbhl-0.8.0/rbhl/tests/testthat/test-bhl_namecount.R            |only
 rbhl-0.8.0/rbhl/tests/testthat/test-bhl_namelist.R             |only
 rbhl-0.8.0/rbhl/tests/testthat/test-bhl_namesearch.R           |only
 rbhl-0.8.0/rbhl/tests/testthat/test-bhl_openurl.R              |only
 rbhl-0.8.0/rbhl/tests/testthat/test-bhl_partsearch.R           |only
 rbhl-0.8.0/rbhl/tests/testthat/test-bhl_subjectsearch.R        |only
 rbhl-0.8.0/rbhl/tests/testthat/test-bhl_titlesearchsimple.R    |only
 rbhl-0.8.0/rbhl/tests/testthat/test-getpages.R                 |only
 99 files changed, 671 insertions(+), 600 deletions(-)

More information about rbhl at CRAN
Permanent link

Package OBsMD updated to version 0.2-0.00 with previous version 0.1-0.4 dated 2015-09-16

Title: Objective Bayesian Model Discrimination in Follow-Up Designs
Description: Implements the objective Bayesian methodology proposed in Consonni and Deldossi in order to choose the optimal experiment that better discriminate between competing models. G.Consonni, L. Deldossi (2014) Objective Bayesian Model Discrimination in Follow-up Experimental Designs, Test. <DOI:10.1007/s11749-015-0461-3>.
Author: Laura Deldossi and Marta Nai Ruscone based on Daniel Meyer's code (2016)
Maintainer: Marta Nai Ruscone <mnairuscone@liuc.it>

Diff between OBsMD versions 0.1-0.4 dated 2015-09-16 and 0.2-0.00 dated 2017-04-12

 DESCRIPTION          |   21 -
 MD5                  |    9 
 NAMESPACE            |   15 
 man/OBsMD-package.Rd |    8 
 src/init.c           |only
 src/obsmd.f          |  983 +++++++++++++++++++++++++++------------------------
 6 files changed, 565 insertions(+), 471 deletions(-)

More information about OBsMD at CRAN
Permanent link

Package lgcp updated to version 1.4 with previous version 1.3-15 dated 2016-07-18

Title: Log-Gaussian Cox Process
Description: Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process. Bayesian inference for spatial, spatiotemporal, multivariate and aggregated point processes using Markov chain Monte Carlo.
Author: Benjamin M. Taylor, Tilman M. Davies, Barry S. Rowlingson, Peter J. Diggle. Additional code contributions from Edzer Pebesma.
Maintainer: Benjamin M. Taylor <b.taylor1@lancaster.ac.uk>

Diff between lgcp versions 1.3-15 dated 2016-07-18 and 1.4 dated 2017-04-12

 DESCRIPTION                                              |   17 
 MD5                                                      |  782 +++++++--------
 NAMESPACE                                                |    4 
 R/AggregateSpatialOnlyPlusParameters.R                   |  522 +++++-----
 R/geometryHandling.R                                     |  192 +--
 R/lgcp.R                                                 |    5 
 R/lgcpSimSpatioTemporal.R                                |  111 +-
 R/lgcpStructures.R                                       |  733 +++++++-------
 build/vignette.rds                                       |binary
 data/wpopdata.rda                                        |binary
 data/wtowncoords.rda                                     |binary
 data/wtowns.rda                                          |binary
 inst/doc/lgcp.pdf                                        |binary
 man/BetaParameters.Rd                                    |    1 
 man/C.diff.single.im.Rd                                  |    1 
 man/CovFunction.Rd                                       |    3 
 man/CovFunction.function.Rd                              |    1 
 man/CovParameters.Rd                                     |    1 
 man/Cvb.Rd                                               |    1 
 man/EvaluatePrior.Rd                                     |    1 
 man/Extract.mstppp.Rd                                    |    3 
 man/Extract.stppp.Rd                                     |    3 
 man/GAfinalise.MonteCarloAverage.Rd                      |    1 
 man/GAfinalise.Rd                                        |    1 
 man/GAfinalise.nullAverage.Rd                            |    1 
 man/GAinitialise.MonteCarloAverage.Rd                    |    1 
 man/GAinitialise.Rd                                      |    1 
 man/GAinitialise.nullAverage.Rd                          |    1 
 man/GAreturnvalue.MonteCarloAverage.Rd                   |    1 
 man/GAreturnvalue.Rd                                     |    1 
 man/GAreturnvalue.nullAverage.Rd                         |    1 
 man/GAupdate.MonteCarloAverage.Rd                        |    1 
 man/GAupdate.Rd                                          |    1 
 man/GAupdate.nullAverage.Rd                              |    1 
 man/GFfinalise.Rd                                        |    1 
 man/GFfinalise.dump2dir.Rd                               |    1 
 man/GFfinalise.nullFunction.Rd                           |    1 
 man/GFinitialise.Rd                                      |    1 
 man/GFinitialise.dump2dir.Rd                             |    1 
 man/GFinitialise.nullFunction.Rd                         |    1 
 man/GFreturnvalue.Rd                                     |    1 
 man/GFreturnvalue.dump2dir.Rd                            |    1 
 man/GFreturnvalue.nullFunction.Rd                        |    1 
 man/GFupdate.Rd                                          |    1 
 man/GFupdate.dump2dir.Rd                                 |    1 
 man/GFupdate.nullFunction.Rd                             |    1 
 man/GPdrv.Rd                                             |    1 
 man/GPdrv2.Rd                                            |    1 
 man/GPdrv2_Multitype.Rd                                  |    1 
 man/GPlist2array.Rd                                      |    1 
 man/GPrealisation.Rd                                     |    1 
 man/GammafromY.Rd                                        |    1 
 man/GaussianPrior.Rd                                     |    1 
 man/K.diff.single.Rd                                     |    1 
 man/K.u.Rd                                               |    1 
 man/K.val.Rd                                             |    1 
 man/KinhomAverage.Rd                                     |    1 
 man/LogGaussianPrior.Rd                                  |    1 
 man/MALAlgcp.Rd                                          |    1 
 man/MALAlgcpAggregateSpatial.PlusPars.Rd                 |    1 
 man/MALAlgcpMultitypeSpatial.PlusPars.Rd                 |    1 
 man/MALAlgcpSpatial.PlusPars.Rd                          |    1 
 man/MALAlgcpSpatial.Rd                                   |    1 
 man/MALAlgcpSpatioTemporal.PlusPars.Rd                   |    1 
 man/MonteCarloAverage.Rd                                 |    1 
 man/PriorSpec.Rd                                         |    1 
 man/PriorSpec.list.Rd                                    |    1 
 man/RandomFieldsCovFct.Rd                                |    1 
 man/SpatialPolygonsDataFrame.stapp.Rd                    |    1 
 man/SpikedExponentialCovFct.Rd                           |    1 
 man/YfromGamma.Rd                                        |    1 
 man/add.list.Rd                                          |    1 
 man/addTemporalCovariates.Rd                             |    7 
 man/affine.SpatialPolygonsDataFrame.Rd                   |    1 
 man/affine.fromFunction.Rd                               |    1 
 man/affine.fromSPDF.Rd                                   |    1 
 man/affine.fromXYZ.Rd                                    |    1 
 man/affine.stppp.Rd                                      |    1 
 man/aggCovInfo.ArealWeightedMean.Rd                      |    1 
 man/aggCovInfo.ArealWeightedSum.Rd                       |    1 
 man/aggCovInfo.Majority.Rd                               |    1 
 man/aggCovInfo.Rd                                        |    1 
 man/aggregateCovariateInfo.Rd                            |    1 
 man/aggregateformulaList.Rd                              |    1 
 man/andrieuthomsh.Rd                                     |    1 
 man/as.SpatialGridDataFrame.Rd                           |    1 
 man/as.SpatialGridDataFrame.fromXYZ.Rd                   |    1 
 man/as.SpatialPixelsDataFrame.Rd                         |    1 
 man/as.SpatialPixelsDataFrame.lgcpgrid.Rd                |    1 
 man/as.array.lgcpgrid.Rd                                 |    1 
 man/as.fromXYZ.Rd                                        |    1 
 man/as.fromXYZ.fromFunction.Rd                           |    1 
 man/as.im.fromFunction.Rd                                |    1 
 man/as.im.fromSPDF.Rd                                    |    1 
 man/as.im.fromXYZ.Rd                                     |    1 
 man/as.list.lgcpgrid.Rd                                  |    1 
 man/as.owin.stapp.Rd                                     |    1 
 man/as.owinlist.Rd                                       |    1 
 man/as.owinlist.SpatialPolygonsDataFrame.Rd              |    1 
 man/as.owinlist.stapp.Rd                                 |    1 
 man/as.ppp.mstppp.Rd                                     |    1 
 man/as.ppp.stppp.Rd                                      |    1 
 man/as.stppp.Rd                                          |    1 
 man/as.stppp.stapp.Rd                                    |    1 
 man/assigninterp.Rd                                      |   15 
 man/at.Rd                                                |    1 
 man/autocorr.Rd                                          |    1 
 man/autocorrMultitype.Rd                                 |    1 
 man/betavals.Rd                                          |    1 
 man/blockcircbase.Rd                                     |    1 
 man/blockcircbaseFunction.Rd                             |    5 
 man/bt.scalar.Rd                                         |    1 
 man/checkObsWin.Rd                                       |    1 
 man/chooseCellwidth.Rd                                   |    7 
 man/circulant.Rd                                         |    1 
 man/circulant.matrix.Rd                                  |    1 
 man/circulant.numeric.Rd                                 |    1 
 man/clearinterp.Rd                                       |    1 
 man/computeGradtruncSpatial.Rd                           |    1 
 man/computeGradtruncSpatioTemporal.Rd                    |    1 
 man/condProbs.Rd                                         |    3 
 man/constantInTime.Rd                                    |    1 
 man/constantInTime.numeric.Rd                            |    1 
 man/constantInTime.stppp.Rd                              |    1 
 man/constanth.Rd                                         |    1 
 man/cov.interp.fft.Rd                                    |    1 
 man/covEffects.Rd                                        |    1 
 man/d.func.Rd                                            |    1 
 man/density.stppp.Rd                                     |    1 
 man/discreteWindow.Rd                                    |    1 
 man/discreteWindow.lgcpPredict.Rd                        |    1 
 man/dump2dir.Rd                                          |    1 
 man/eigenfrombase.Rd                                     |    1 
 man/etavals.Rd                                           |    1 
 man/exceedProbs.Rd                                       |    1 
 man/exceedProbsAggregated.Rd                             |    1 
 man/expectation.Rd                                       |    1 
 man/expectation.lgcpPredict.Rd                           |    1 
 man/expectation.lgcpPredictSpatialOnlyPlusParameters.Rd  |    1 
 man/exponentialCovFct.Rd                                 |    1 
 man/extendspatialAtRisk.Rd                               |    1 
 man/extract.Rd                                           |    1 
 man/extract.lgcpPredict.Rd                               |    1 
 man/fftgrid.Rd                                           |    1 
 man/fftinterpolate.Rd                                    |    1 
 man/fftinterpolate.fromFunction.Rd                       |    1 
 man/fftinterpolate.fromSPDF.Rd                           |    1 
 man/fftinterpolate.fromXYZ.Rd                            |    1 
 man/fftmultiply.Rd                                       |    1 
 man/formulaList.Rd                                       |    1 
 man/g.diff.single.Rd                                     |    1 
 man/gOverlay.Rd                                          |    1 
 man/genFFTgrid.Rd                                        |    1 
 man/getCellCounts.Rd                                     |    1 
 man/getCounts.Rd                                         |    1 
 man/getCovParameters.GPrealisation.Rd                    |    1 
 man/getCovParameters.Rd                                  |    1 
 man/getCovParameters.list.Rd                             |    1 
 man/getLHSformulaList.Rd                                 |    1 
 man/getRotation.Rd                                       |    1 
 man/getRotation.default.Rd                               |    1 
 man/getRotation.stppp.Rd                                 |    1 
 man/getZmat.Rd                                           |    3 
 man/getZmats.Rd                                          |    1 
 man/getinterp.Rd                                         |   13 
 man/getlgcpPredictSpatialINLA.Rd                         |    1 
 man/getpolyol.Rd                                         |    3 
 man/getup.Rd                                             |    1 
 man/ginhomAverage.Rd                                     |    1 
 man/grid2spdf.Rd                                         |    1 
 man/grid2spix.Rd                                         |    1 
 man/grid2spoly.Rd                                        |    1 
 man/grid2spts.Rd                                         |    1 
 man/gridInWindow.Rd                                      |    1 
 man/gridav.Rd                                            |    1 
 man/gridav.lgcpPredict.Rd                                |    1 
 man/gridfun.Rd                                           |    1 
 man/gridfun.lgcpPredict.Rd                               |    1 
 man/gu.Rd                                                |    1 
 man/guessinterp.Rd                                       |   17 
 man/hasNext.Rd                                           |    1 
 man/hasNext.iter.Rd                                      |    1 
 man/hvals.Rd                                             |    1 
 man/hvals.lgcpPredict.Rd                                 |    1 
 man/identify.lgcpPredict.Rd                              |    1 
 man/identifygrid.Rd                                      |    1 
 man/image.lgcpgrid.Rd                                    |    1 
 man/initialiseAMCMC.Rd                                   |    1 
 man/initialiseAMCMC.andrieuthomsh.Rd                     |    1 
 man/initialiseAMCMC.constanth.Rd                         |    1 
 man/integerise.Rd                                        |    1 
 man/integerise.mstppp.Rd                                 |    1 
 man/integerise.stppp.Rd                                  |    1 
 man/intens.Rd                                            |    1 
 man/intens.lgcpPredict.Rd                                |    1 
 man/intens.lgcpSimMultitypeSpatialPlusParameters.Rd      |    1 
 man/intens.lgcpSimSpatialPlusParameters.Rd               |    1 
 man/interptypes.Rd                                       |   13 
 man/inversebase.Rd                                       |    1 
 man/is.SPD.Rd                                            |    1 
 man/is.burnin.Rd                                         |    1 
 man/is.pow2.Rd                                           |    1 
 man/is.retain.Rd                                         |    1 
 man/iteration.Rd                                         |    1 
 man/lambdaEst.Rd                                         |    1 
 man/lambdaEst.ppp.Rd                                     |    1 
 man/lambdaEst.stppp.Rd                                   |    1 
 man/lgcp-package.Rd                                      |    3 
 man/lgcpForecast.Rd                                      |    1 
 man/lgcpInits.Rd                                         |   11 
 man/lgcpPredict.Rd                                       |    1 
 man/lgcpPredictAggregateSpatialPlusPars.Rd               |   43 
 man/lgcpPredictAggregated.Rd                             |    1 
 man/lgcpPredictMultitypeSpatialPlusPars.Rd               |    1 
 man/lgcpPredictSpatial.Rd                                |    1 
 man/lgcpPredictSpatialINLA.Rd                            |    1 
 man/lgcpPredictSpatialPlusPars.Rd                        |    1 
 man/lgcpPredictSpatioTemporalPlusPars.Rd                 |    1 
 man/lgcpPrior.Rd                                         |    3 
 man/lgcpSim.Rd                                           |   17 
 man/lgcpSimMultitypeSpatialCovariates.Rd                 |    1 
 man/lgcpSimSpatial.Rd                                    |    1 
 man/lgcpSimSpatialCovariates.Rd                          |    1 
 man/lgcpbayes.Rd                                         |    1 
 man/lgcpgrid.Rd                                          |    1 
 man/lgcpgrid.array.Rd                                    |    1 
 man/lgcpgrid.list.Rd                                     |    1 
 man/lgcpgrid.matrix.Rd                                   |    1 
 man/lgcppars.Rd                                          |    1 
 man/lgcpvignette.Rd                                      |    1 
 man/loc2poly.Rd                                          |    1 
 man/loop.mcmc.Rd                                         |    1 
 man/ltar.Rd                                              |    3 
 man/matchcovariance.Rd                                   |    1 
 man/mcmcLoop.Rd                                          |    1 
 man/mcmcProgressNone.Rd                                  |    1 
 man/mcmcProgressPrint.Rd                                 |    1 
 man/mcmcProgressTextBar.Rd                               |    1 
 man/mcmcProgressTk.Rd                                    |    1 
 man/mcmcpars.Rd                                          |    1 
 man/mcmctrace.Rd                                         |    1 
 man/mcmctrace.lgcpPredict.Rd                             |    1 
 man/meanfield.Rd                                         |    1 
 man/meanfield.lgcpPredict.Rd                             |    1 
 man/meanfield.lgcpPredictINLA.Rd                         |    1 
 man/minimum.contrast.Rd                                  |    1 
 man/minimum.contrast.spatiotemporal.Rd                   |    1 
 man/mstppp.Rd                                            |    1 
 man/mstppp.list.Rd                                       |    1 
 man/mstppp.ppp.Rd                                        |    1 
 man/mstppp.stppp.Rd                                      |    1 
 man/muEst.Rd                                             |    1 
 man/multiply.list.Rd                                     |    1 
 man/my.KinhomAverage.Rd                                  |    1 
 man/my.ginhomAverage.Rd                                  |    1 
 man/neattable.Rd                                         |    1 
 man/neigh2D.Rd                                           |    1 
 man/nextStep.Rd                                          |    1 
 man/nullAverage.Rd                                       |    1 
 man/nullFunction.Rd                                      |    1 
 man/numCases.Rd                                          |    1 
 man/osppp2latlon.Rd                                      |    1 
 man/osppp2merc.Rd                                        |    1 
 man/paramprec.Rd                                         |    1 
 man/paramprecbase.Rd                                     |    1 
 man/parautocorr.Rd                                       |    1 
 man/parsummary.Rd                                        |    1 
 man/plot.fromSPDF.Rd                                     |    1 
 man/plot.fromXYZ.Rd                                      |    1 
 man/plot.lgcpAutocorr.Rd                                 |    1 
 man/plot.lgcpPredict.Rd                                  |    1 
 man/plot.lgcpQuantiles.Rd                                |    1 
 man/plot.lgcpZmat.Rd                                     |    1 
 man/plot.lgcpgrid.Rd                                     |    1 
 man/plot.mcmcdiag.Rd                                     |    1 
 man/plot.mstppp.Rd                                       |    1 
 man/plot.stppp.Rd                                        |    1 
 man/plot.temporalAtRisk.Rd                               |    1 
 man/plotExceed.Rd                                        |    1 
 man/plotExceed.array.Rd                                  |    1 
 man/plotExceed.lgcpPredict.Rd                            |    1 
 man/plotit.Rd                                            |    1 
 man/postcov.Rd                                           |    3 
 man/postcov.lgcpPredictAggregateSpatialPlusParameters.Rd |    1 
 man/postcov.lgcpPredictMultitypeSpatialPlusParameters.Rd |    1 
 man/postcov.lgcpPredictSpatialOnlyPlusParameters.Rd      |    1 
 man/postcov.lgcpPredictSpatioTemporalPlusParameters.Rd   |    1 
 man/print.dump2dir.Rd                                    |    1 
 man/print.fromFunction.Rd                                |    1 
 man/print.fromSPDF.Rd                                    |    1 
 man/print.fromXYZ.Rd                                     |    1 
 man/print.gridaverage.Rd                                 |    1 
 man/print.lgcpPredict.Rd                                 |    1 
 man/print.lgcpgrid.Rd                                    |    1 
 man/print.mcmc.Rd                                        |    1 
 man/print.mstppp.Rd                                      |    1 
 man/print.stapp.Rd                                       |    1 
 man/print.stppp.Rd                                       |    1 
 man/print.temporalAtRisk.Rd                              |    1 
 man/priorpost.Rd                                         |    1 
 man/quantile.lgcpPredict.Rd                              |    1 
 man/quantile.lgcpgrid.Rd                                 |    1 
 man/raster.lgcpgrid.Rd                                   |    1 
 man/rescale.mstppp.Rd                                    |    1 
 man/rescale.stppp.Rd                                     |    1 
 man/resetLoop.Rd                                         |    1 
 man/rgauss.Rd                                            |    1 
 man/roteffgain.Rd                                        |    1 
 man/rotmat.Rd                                            |    1 
 man/rr.Rd                                                |    1 
 man/rr.lgcpPredict.Rd                                    |    1 
 man/samplePosterior.Rd                                   |    3 
 man/segProbs.Rd                                          |    5 
 man/seintens.Rd                                          |    1 
 man/seintens.lgcpPredict.Rd                              |    1 
 man/selectObsWindow.Rd                                   |    1 
 man/selectObsWindow.default.Rd                           |    1 
 man/selectObsWindow.stppp.Rd                             |    1 
 man/serr.Rd                                              |    1 
 man/serr.lgcpPredict.Rd                                  |    1 
 man/setTxtProgressBar2.Rd                                |    1 
 man/setoutput.Rd                                         |    1 
 man/showGrid.Rd                                          |    1 
 man/showGrid.default.Rd                                  |    1 
 man/showGrid.lgcpPredict.Rd                              |    1 
 man/showGrid.stppp.Rd                                    |    1 
 man/smultiply.list.Rd                                    |    1 
 man/sparsebase.Rd                                        |    1 
 man/spatialAtRisk.Rd                                     |    1 
 man/spatialAtRisk.SpatialGridDataFrame.Rd                |    1 
 man/spatialAtRisk.SpatialPolygonsDataFrame.Rd            |    1 
 man/spatialAtRisk.bivden.Rd                              |    1 
 man/spatialAtRisk.default.Rd                             |    1 
 man/spatialAtRisk.fromXYZ.Rd                             |    1 
 man/spatialAtRisk.function.Rd                            |    1 
 man/spatialAtRisk.im.Rd                                  |    1 
 man/spatialAtRisk.lgcpgrid.Rd                            |    1 
 man/spatialIntensities.Rd                                |    1 
 man/spatialIntensities.fromSPDF.Rd                       |    1 
 man/spatialIntensities.fromXYZ.Rd                        |    1 
 man/spatialparsEst.Rd                                    |    1 
 man/stGPrealisation.Rd                                   |    1 
 man/stapp.Rd                                             |    1 
 man/stapp.SpatialPolygonsDataFrame.Rd                    |    1 
 man/stapp.list.Rd                                        |    1 
 man/stppp.Rd                                             |    1 
 man/stppp.list.Rd                                        |    1 
 man/stppp.ppp.Rd                                         |    1 
 man/summary.lgcpgrid.Rd                                  |    1 
 man/summary.mcmc.Rd                                      |    1 
 man/target.and.grad.AggregateSpatialPlusPars.Rd          |    1 
 man/target.and.grad.MultitypespatialPlusPars.Rd          |    1 
 man/target.and.grad.SpatioTemporalPlusPars.Rd            |    1 
 man/target.and.grad.spatial.Rd                           |    1 
 man/target.and.grad.spatialPlusPars.Rd                   |    1 
 man/target.and.grad.spatiotemporal.Rd                    |    1 
 man/tempRaster.Rd                                        |    1 
 man/temporalAtRisk.Rd                                    |    1 
 man/temporalAtRisk.function.Rd                           |    1 
 man/temporalAtRisk.numeric.Rd                            |    1 
 man/textsummary.Rd                                       |    1 
 man/thetaEst.Rd                                          |    1 
 man/toral.cov.mat.Rd                                     |    1 
 man/touchingowin.Rd                                      |    1 
 man/traceplots.Rd                                        |    1 
 man/transblack.Rd                                        |    1 
 man/transblue.Rd                                         |    1 
 man/transgreen.Rd                                        |    1 
 man/transred.Rd                                          |    1 
 man/txtProgressBar2.Rd                                   |    1 
 man/updateAMCMC.Rd                                       |    1 
 man/updateAMCMC.andrieuthomsh.Rd                         |    1 
 man/updateAMCMC.constanth.Rd                             |    1 
 man/varfield.Rd                                          |    1 
 man/varfield.lgcpPredict.Rd                              |    1 
 man/varfield.lgcpPredictINLA.Rd                          |    1 
 man/window.lgcpPredict.Rd                                |    1 
 man/xvals.Rd                                             |    1 
 man/xvals.SpatialGridDataFrame.Rd                        |    1 
 man/xvals.default.Rd                                     |    1 
 man/xvals.fromXYZ.Rd                                     |    1 
 man/xvals.lgcpPredict.Rd                                 |    1 
 man/yvals.Rd                                             |    1 
 man/yvals.SpatialGridDataFrame.Rd                        |    1 
 man/yvals.default.Rd                                     |    1 
 man/yvals.fromXYZ.Rd                                     |    1 
 man/yvals.lgcpPredict.Rd                                 |    1 
 man/zvals.Rd                                             |    1 
 man/zvals.SpatialGridDataFrame.Rd                        |    1 
 man/zvals.default.Rd                                     |    1 
 man/zvals.fromXYZ.Rd                                     |    1 
 tests/lgcpMethodsTest.R                                  |   22 
 392 files changed, 1369 insertions(+), 1561 deletions(-)

More information about lgcp at CRAN
Permanent link

Package convoSPAT updated to version 1.2 with previous version 1.1.1 dated 2016-10-21

Title: Convolution-Based Nonstationary Spatial Modeling
Description: Fits convolution-based nonstationary Gaussian process models to point-referenced spatial data. The nonstationary covariance function allows the user to specify the underlying correlation structure and which spatial dependence parameters should be allowed to vary over space: the anisotropy, nugget variance, and process variance. The parameters are estimated via maximum likelihood, using a local likelihood approach. Also provided are functions to fit stationary spatial models for comparison, calculate the Kriging predictor and standard errors, and create various plots to visualize nonstationarity.
Author: Mark D. Risser [aut, cre]
Maintainer: Mark D. Risser <markdrisser@gmail.com>

Diff between convoSPAT versions 1.1.1 dated 2016-10-21 and 1.2 dated 2017-04-12

 DESCRIPTION                      |    8 
 MD5                              |   26 -
 R/convoSPAT_fitpred.R            |  573 ++++++++++++++++++++++++++-------------
 R/convoSPAT_paramEst.R           |   47 +--
 R/convoSPAT_summplot.R           |   23 +
 man/Aniso_fit.Rd                 |   13 
 man/NSconvo_fit.Rd               |   49 ++-
 man/make_aniso_loglik.Rd         |    4 
 man/make_aniso_loglik_kappa.Rd   |    4 
 man/make_global_loglik1.Rd       |    8 
 man/make_global_loglik1_kappa.Rd |    4 
 man/make_global_loglik2.Rd       |    2 
 man/make_global_loglik3.Rd       |    4 
 man/make_global_loglik3_kappa.Rd |    4 
 14 files changed, 526 insertions(+), 243 deletions(-)

More information about convoSPAT at CRAN
Permanent link

Package cleanNLP updated to version 1.5.2 with previous version 0.24 dated 2016-11-11

Title: A Tidy Data Model for Natural Language Processing
Description: Provides a set of fast tools for converting a textual corpus into a set of normalized tables. Users may make use of a Python back end with 'spaCy' <https://spacy.io> or the Java back end 'CoreNLP' <http://stanfordnlp.github.io/CoreNLP/>. A minimal back end with no external dependencies is also provided. Exposed annotation tasks include tokenization, part of speech tagging, named entity recognition, entity linking, sentiment analysis, dependency parsing, coreference resolution, and word embeddings. Summary statistics regarding token unigram, part of speech tag, and dependency type frequencies are also included to assist with analyses.
Author: Taylor B. Arnold [aut, cre]
Maintainer: Taylor B. Arnold <taylor.arnold@acm.org>

Diff between cleanNLP versions 0.24 dated 2016-11-11 and 1.5.2 dated 2017-04-12

 cleanNLP-0.24/cleanNLP/R/engine.R                                                                   |only
 cleanNLP-0.24/cleanNLP/java/src/main/java/edu/richmond/nlp/Outputter/CSVSentimentOutputter.java     |only
 cleanNLP-0.24/cleanNLP/java/src/main/java/edu/richmond/nlp/Outputter/CSVTripleOutputter.java        |only
 cleanNLP-0.24/cleanNLP/java/src/main/java/edu/richmond/nlp/Writer/CSVSentimentDocumentWriter.java   |only
 cleanNLP-0.24/cleanNLP/java/src/main/java/edu/richmond/nlp/Writer/CSVTripleDocumentWriter.java      |only
 cleanNLP-0.24/cleanNLP/man/cleanNLP.Rd                                                              |only
 cleanNLP-0.24/cleanNLP/man/combine_annotators.Rd                                                    |only
 cleanNLP-0.24/cleanNLP/man/download_clean_nlp.Rd                                                    |only
 cleanNLP-0.24/cleanNLP/man/get_sentiment.Rd                                                         |only
 cleanNLP-0.24/cleanNLP/man/get_triple.Rd                                                            |only
 cleanNLP-0.24/cleanNLP/man/init_clean_nlp.Rd                                                        |only
 cleanNLP-0.24/cleanNLP/man/set_language.Rd                                                          |only
 cleanNLP-0.24/cleanNLP/man/set_properties.Rd                                                        |only
 cleanNLP-1.5.2/cleanNLP/DESCRIPTION                                                                 |   28 
 cleanNLP-1.5.2/cleanNLP/MD5                                                                         |  118 +-
 cleanNLP-1.5.2/cleanNLP/NAMESPACE                                                                   |   40 
 cleanNLP-1.5.2/cleanNLP/R/accessors.R                                                               |  146 +--
 cleanNLP-1.5.2/cleanNLP/R/annotate.R                                                                |  460 ++++++++--
 cleanNLP-1.5.2/cleanNLP/R/backend_coreNLP.R                                                         |only
 cleanNLP-1.5.2/cleanNLP/R/backend_spaCy.R                                                           |only
 cleanNLP-1.5.2/cleanNLP/R/backend_tokenizers.R                                                      |only
 cleanNLP-1.5.2/cleanNLP/R/download.R                                                                |   30 
 cleanNLP-1.5.2/cleanNLP/R/onLoad.R                                                                  |    7 
 cleanNLP-1.5.2/cleanNLP/R/pkg.R                                                                     |   50 -
 cleanNLP-1.5.2/cleanNLP/R/tools.R                                                                   |only
 cleanNLP-1.5.2/cleanNLP/README.md                                                                   |  227 ++++
 cleanNLP-1.5.2/cleanNLP/build                                                                       |only
 cleanNLP-1.5.2/cleanNLP/data/obama.rda                                                              |binary
 cleanNLP-1.5.2/cleanNLP/inst/doc                                                                    |only
 cleanNLP-1.5.2/cleanNLP/inst/extdata/cleanNLP-0.1.jar                                               |binary
 cleanNLP-1.5.2/cleanNLP/inst/py                                                                     |only
 cleanNLP-1.5.2/cleanNLP/inst/txt_files                                                              |only
 cleanNLP-1.5.2/cleanNLP/java/src/main/java/edu/richmond/nlp/AnnotationProcessor.java                |    9 
 cleanNLP-1.5.2/cleanNLP/java/src/main/java/edu/richmond/nlp/Outputter/CSVCoreferenceOutputter.java  |    3 
 cleanNLP-1.5.2/cleanNLP/java/src/main/java/edu/richmond/nlp/Outputter/CSVSentenceOutputter.java     |only
 cleanNLP-1.5.2/cleanNLP/java/src/main/java/edu/richmond/nlp/Writer/CSVDependencyDocumentWriter.java |   12 
 cleanNLP-1.5.2/cleanNLP/java/src/main/java/edu/richmond/nlp/Writer/CSVSentenceDocumentWriter.java   |only
 cleanNLP-1.5.2/cleanNLP/java/src/main/java/edu/richmond/nlp/Writer/CSVTokenDocumentWriter.java      |   13 
 cleanNLP-1.5.2/cleanNLP/man/annotate.Rd                                                             |   20 
 cleanNLP-1.5.2/cleanNLP/man/cleanNLP-package.Rd                                                     |only
 cleanNLP-1.5.2/cleanNLP/man/combine_documents.Rd                                                    |only
 cleanNLP-1.5.2/cleanNLP/man/dep_frequency.Rd                                                        |    1 
 cleanNLP-1.5.2/cleanNLP/man/doc_id_reset.Rd                                                         |    1 
 cleanNLP-1.5.2/cleanNLP/man/download_core_nlp.Rd                                                    |only
 cleanNLP-1.5.2/cleanNLP/man/extract_documents.Rd                                                    |only
 cleanNLP-1.5.2/cleanNLP/man/from_CoNLLU.Rd                                                          |only
 cleanNLP-1.5.2/cleanNLP/man/get_coreference.Rd                                                      |   13 
 cleanNLP-1.5.2/cleanNLP/man/get_dependency.Rd                                                       |   14 
 cleanNLP-1.5.2/cleanNLP/man/get_document.Rd                                                         |    7 
 cleanNLP-1.5.2/cleanNLP/man/get_entity.Rd                                                           |   52 -
 cleanNLP-1.5.2/cleanNLP/man/get_sentence.Rd                                                         |only
 cleanNLP-1.5.2/cleanNLP/man/get_tfidf.Rd                                                            |only
 cleanNLP-1.5.2/cleanNLP/man/get_token.Rd                                                            |   12 
 cleanNLP-1.5.2/cleanNLP/man/get_vector.Rd                                                           |only
 cleanNLP-1.5.2/cleanNLP/man/init_coreNLP.Rd                                                         |only
 cleanNLP-1.5.2/cleanNLP/man/init_spaCy.Rd                                                           |only
 cleanNLP-1.5.2/cleanNLP/man/init_tokenizers.Rd                                                      |only
 cleanNLP-1.5.2/cleanNLP/man/obama.Rd                                                                |    1 
 cleanNLP-1.5.2/cleanNLP/man/pos_frequency.Rd                                                        |    1 
 cleanNLP-1.5.2/cleanNLP/man/print.annotation.Rd                                                     |    1 
 cleanNLP-1.5.2/cleanNLP/man/read_annotation.Rd                                                      |    1 
 cleanNLP-1.5.2/cleanNLP/man/tidy_pca.Rd                                                             |only
 cleanNLP-1.5.2/cleanNLP/man/word_frequency.Rd                                                       |    1 
 cleanNLP-1.5.2/cleanNLP/man/write_annotation.Rd                                                     |    1 
 cleanNLP-1.5.2/cleanNLP/tests                                                                       |only
 cleanNLP-1.5.2/cleanNLP/vignettes                                                                   |only
 66 files changed, 934 insertions(+), 335 deletions(-)

More information about cleanNLP at CRAN
Permanent link

Package abbyyR updated to version 0.5.1 with previous version 0.5.0 dated 2016-06-20

Title: Access to Abbyy Optical Character Recognition (OCR) API
Description: Get text from images of text using Abbyy Cloud Optical Character Recognition (OCR) API. Easily OCR images, barcodes, forms, documents with machine readable zones, e.g. passports. Get the results in a variety of formats including plain text and XML. To learn more about the Abbyy OCR API, see <http://ocrsdk.com/>.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>

Diff between abbyyR versions 0.5.0 dated 2016-06-20 and 0.5.1 dated 2017-04-12

 abbyyR-0.5.0/abbyyR/inst/extdata/Page_01.tif                            |only
 abbyyR-0.5.0/abbyyR/inst/extdata/doc10003.tif                           |only
 abbyyR-0.5.0/abbyyR/inst/extdata/t1.TIF                                 |only
 abbyyR-0.5.0/abbyyR/inst/extdata/wisc_ads/PA_Casey_Rendell_Twisting.pdf |only
 abbyyR-0.5.0/abbyyR/inst/extdata/wisc_ads/PA_Fisher_Rendell_Liberal.pdf |only
 abbyyR-0.5.0/abbyyR/inst/extdata/wisc_ads/VA_Boucher_Healthcare.pdf     |only
 abbyyR-0.5.0/abbyyR/inst/extdata/wisc_ads/VA_Goode_87_Yr_Old_Mom.pdf    |only
 abbyyR-0.5.1/abbyyR/DESCRIPTION                                         |   14 -
 abbyyR-0.5.1/abbyyR/MD5                                                 |  118 ++++------
 abbyyR-0.5.1/abbyyR/NAMESPACE                                           |    1 
 abbyyR-0.5.1/abbyyR/NEWS.md                                             |   21 +
 abbyyR-0.5.1/abbyyR/R/abbyyR.R                                          |    1 
 abbyyR-0.5.1/abbyyR/R/deleteTask.R                                      |   21 +
 abbyyR-0.5.1/abbyyR/R/getAppInfo.R                                      |    2 
 abbyyR-0.5.1/abbyyR/R/getResults.R                                      |    8 
 abbyyR-0.5.1/abbyyR/R/getTaskStatus.R                                   |   12 -
 abbyyR-0.5.1/abbyyR/R/listFinishedTasks.R                               |   10 
 abbyyR-0.5.1/abbyyR/R/listTasks.R                                       |   27 --
 abbyyR-0.5.1/abbyyR/R/ocrFile.R                                         |   16 +
 abbyyR-0.5.1/abbyyR/R/processBarcodeField.R                             |    4 
 abbyyR-0.5.1/abbyyR/R/processBusinessCard.R                             |    6 
 abbyyR-0.5.1/abbyyR/R/processCheckmarkField.R                           |    2 
 abbyyR-0.5.1/abbyyR/R/processDocument.R                                 |   56 +++-
 abbyyR-0.5.1/abbyyR/R/processFields.R                                   |   12 -
 abbyyR-0.5.1/abbyyR/R/processImage.R                                    |   50 +++-
 abbyyR-0.5.1/abbyyR/R/processMRZ.R                                      |    4 
 abbyyR-0.5.1/abbyyR/R/processPhotoId.R                                  |   10 
 abbyyR-0.5.1/abbyyR/R/processRemoteImage.R                              |   42 ++-
 abbyyR-0.5.1/abbyyR/R/processTextField.R                                |    4 
 abbyyR-0.5.1/abbyyR/R/submitImage.R                                     |    2 
 abbyyR-0.5.1/abbyyR/README.md                                           |    5 
 abbyyR-0.5.1/abbyyR/build/vignette.rds                                  |binary
 abbyyR-0.5.1/abbyyR/inst/doc/example.html                               |   19 +
 abbyyR-0.5.1/abbyyR/inst/doc/overview.html                              |   19 +
 abbyyR-0.5.1/abbyyR/inst/doc/wiscads.Rmd                                |    2 
 abbyyR-0.5.1/abbyyR/inst/doc/wiscads.html                               |   21 +
 abbyyR-0.5.1/abbyyR/inst/extdata/doc10003.png                           |only
 abbyyR-0.5.1/abbyyR/man/abbyyR-package.Rd                               |    3 
 abbyyR-0.5.1/abbyyR/man/abbyy_GET.Rd                                    |    1 
 abbyyR-0.5.1/abbyyR/man/abbyy_POST.Rd                                   |    1 
 abbyyR-0.5.1/abbyyR/man/abbyy_check.Rd                                  |    1 
 abbyyR-0.5.1/abbyyR/man/deleteTask.Rd                                   |    8 
 abbyyR-0.5.1/abbyyR/man/getAppInfo.Rd                                   |    1 
 abbyyR-0.5.1/abbyyR/man/getResults.Rd                                   |    1 
 abbyyR-0.5.1/abbyyR/man/getTaskStatus.Rd                                |    7 
 abbyyR-0.5.1/abbyyR/man/listFinishedTasks.Rd                            |    3 
 abbyyR-0.5.1/abbyyR/man/listTasks.Rd                                    |    7 
 abbyyR-0.5.1/abbyyR/man/ocrFile.Rd                                      |    5 
 abbyyR-0.5.1/abbyyR/man/processBarcodeField.Rd                          |    1 
 abbyyR-0.5.1/abbyyR/man/processBusinessCard.Rd                          |    1 
 abbyyR-0.5.1/abbyyR/man/processCheckmarkField.Rd                        |    1 
 abbyyR-0.5.1/abbyyR/man/processDocument.Rd                              |   39 ++-
 abbyyR-0.5.1/abbyyR/man/processFields.Rd                                |    5 
 abbyyR-0.5.1/abbyyR/man/processImage.Rd                                 |   38 ++-
 abbyyR-0.5.1/abbyyR/man/processMRZ.Rd                                   |    1 
 abbyyR-0.5.1/abbyyR/man/processPhotoId.Rd                               |    7 
 abbyyR-0.5.1/abbyyR/man/processRemoteImage.Rd                           |   31 +-
 abbyyR-0.5.1/abbyyR/man/processTextField.Rd                             |    1 
 abbyyR-0.5.1/abbyyR/man/setapp.Rd                                       |    1 
 abbyyR-0.5.1/abbyyR/man/submitImage.Rd                                  |    1 
 abbyyR-0.5.1/abbyyR/tests/testthat/test-get-results.R                   |    4 
 abbyyR-0.5.1/abbyyR/tests/testthat/test-list-tasks.R                    |    6 
 abbyyR-0.5.1/abbyyR/vignettes/wiscads.Rmd                               |    2 
 abbyyR-0.5.1/abbyyR/vignettes/wiscads.md                                |    2 
 64 files changed, 400 insertions(+), 288 deletions(-)

More information about abbyyR at CRAN
Permanent link

Package TMB updated to version 1.7.9 with previous version 1.7.8 dated 2017-02-08

Title: Template Model Builder: A General Random Effect Tool Inspired by 'ADMB'
Description: With this tool, a user should be able to quickly implement complex random effect models through simple C++ templates. The package combines 'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain an efficient implementation of the applied Laplace approximation with exact derivatives. Key features are: Automatic sparseness detection, parallelism through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph], Brad Bell [cph], Hans Skaug [ctb], Arni Magnusson [ctb], Casper Berg [ctb], Anders Nielsen [ctb], Martin Maechler [ctb], Theo Michelot [ctb], Mollie Brooks [ctb], Alex Forrence [ctb], Christoffer Moesgaard Albertsen [ctb], Cole Monnahan [ctb]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>

Diff between TMB versions 1.7.8 dated 2017-02-08 and 1.7.9 dated 2017-04-12

 DESCRIPTION                        |   10 +++---
 MD5                                |   18 +++++------
 NEWS                               |   14 ++++++++
 R/TMB.R                            |    1 
 R/examples.R                       |    2 -
 inst/include/config.hpp            |   10 +++---
 inst/include/convert.hpp           |   11 ++++++
 inst/include/tmb_core.hpp          |   59 +++++++++++++++++++++++--------------
 inst/include/tmbutils/autodiff.hpp |   13 ++++----
 inst/include/tmbutils/vector.hpp   |   12 ++++---
 10 files changed, 99 insertions(+), 51 deletions(-)

More information about TMB at CRAN
Permanent link

Package TAM updated to version 2.0-37 with previous version 1.99999-31 dated 2017-03-02

Title: Test Analysis Modules
Description: Includes marginal maximum likelihood estimation of uni- and multidimensional item response models (Rasch, 2PL, 3PL, Generalized Partial Credit, Multi Facets, Nominal Item Response, Structured Latent Class Analysis, Mixture Distribution IRT Models, Located Latent Class Models) and joint maximum likelihood estimation for models from the Rasch family. Latent regression models and plausible value imputation are also supported.
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut], Margaret Wu [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>

Diff between TAM versions 1.99999-31 dated 2017-03-02 and 2.0-37 dated 2017-04-12

 TAM-1.99999-31/TAM/R/TAM.itempartable.R              |only
 TAM-1.99999-31/TAM/R/TAM_utils.R                     |only
 TAM-1.99999-31/TAM/R/calc_exp_TK.R                   |only
 TAM-1.99999-31/TAM/R/calc_posterior.v2.R             |only
 TAM-1.99999-31/TAM/R/calc_prob.v5.R                  |only
 TAM-1.99999-31/TAM/R/mml.3pl.TAM.ic.R                |only
 TAM-1.99999-31/TAM/R/mml.3pl.TAM.itempartable.R      |only
 TAM-1.99999-31/TAM/R/mml.3pl.calc_prob.v5.R          |only
 TAM-1.99999-31/TAM/R/mml.3pl.distrubutionmoments.R   |only
 TAM-1.99999-31/TAM/R/stud_prior.R                    |only
 TAM-2.0-37/TAM/DESCRIPTION                           |   14 
 TAM-2.0-37/TAM/MD5                                   |  141 +++---
 TAM-2.0-37/TAM/NAMESPACE                             |    8 
 TAM-2.0-37/TAM/R/IRT.drawPV.R                        |  106 ++---
 TAM-2.0-37/TAM/R/IRT.informationCurve.R              |   12 
 TAM-2.0-37/TAM/R/IRT.irfprob.tam.R                   |    4 
 TAM-2.0-37/TAM/R/Mstep_slope.v2.R                    |    2 
 TAM-2.0-37/TAM/R/RcppExports.R                       |    4 
 TAM-2.0-37/TAM/R/logLik.tam.jml.R                    |only
 TAM-2.0-37/TAM/R/plot.tam.R                          |    2 
 TAM-2.0-37/TAM/R/print.tam.R                         |    2 
 TAM-2.0-37/TAM/R/summary.msq.itemfit.R               |    1 
 TAM-2.0-37/TAM/R/summary.msq.itemfitWLE.R            |    1 
 TAM-2.0-37/TAM/R/summary.tam.R                       |   19 
 TAM-2.0-37/TAM/R/summary.tam.jml.R                   |   26 -
 TAM-2.0-37/TAM/R/summary.tam.mml.3pl.R               |   70 ++-
 TAM-2.0-37/TAM/R/summary.tamaan.3pl.intro.R          |    2 
 TAM-2.0-37/TAM/R/tam.calc.counts.R                   |   30 -
 TAM-2.0-37/TAM/R/tam.jml.R                           |  348 +---------------
 TAM-2.0-37/TAM/R/tam.jml.fit.R                       |    2 
 TAM-2.0-37/TAM/R/tam.jml.wle.R                       |    2 
 TAM-2.0-37/TAM/R/tam.jml.xsi.R                       |    7 
 TAM-2.0-37/TAM/R/tam.jml.xsi2.R                      |    8 
 TAM-2.0-37/TAM/R/tam.jml2.R                          |  360 -----------------
 TAM-2.0-37/TAM/R/tam.latreg.R                        |    6 
 TAM-2.0-37/TAM/R/tam.mml.2pl.R                       |   17 
 TAM-2.0-37/TAM/R/tam.mml.3pl.R                       |  395 +++++++++----------
 TAM-2.0-37/TAM/R/tam.mml.3pl.algorithm.R             |   62 --
 TAM-2.0-37/TAM/R/tam.mml.3pl.est.guessing.R          |    6 
 TAM-2.0-37/TAM/R/tam.mml.3pl.est.slopes.R            |   12 
 TAM-2.0-37/TAM/R/tam.mml.R                           |   35 +
 TAM-2.0-37/TAM/R/tam.mml.mfr.R                       |   38 -
 TAM-2.0-37/TAM/R/tam.pv.R                            |    9 
 TAM-2.0-37/TAM/R/tam.se.R                            |    6 
 TAM-2.0-37/TAM/R/tam.wle.R                           |    2 
 TAM-2.0-37/TAM/R/tam_calc_exp.R                      |only
 TAM-2.0-37/TAM/R/tam_calc_posterior.R                |only
 TAM-2.0-37/TAM/R/tam_calc_prob_helper_subtract_max.R |only
 TAM-2.0-37/TAM/R/tam_dtnorm.R                        |only
 TAM-2.0-37/TAM/R/tam_ginv.R                          |only
 TAM-2.0-37/TAM/R/tam_itempartable.R                  |only
 TAM-2.0-37/TAM/R/tam_jml_version1.R                  |only
 TAM-2.0-37/TAM/R/tam_jml_version2.R                  |only
 TAM-2.0-37/TAM/R/tam_mml_3pl_calc_exp.R              |    2 
 TAM-2.0-37/TAM/R/tam_mml_3pl_calc_prob.R             |   25 -
 TAM-2.0-37/TAM/R/tam_mml_3pl_deviance.R              |only
 TAM-2.0-37/TAM/R/tam_mml_3pl_distributionmoments.R   |only
 TAM-2.0-37/TAM/R/tam_mml_3pl_expected_counts.R       |only
 TAM-2.0-37/TAM/R/tam_mml_3pl_ic.R                    |only
 TAM-2.0-37/TAM/R/tam_mml_3pl_itempartable.R          |only
 TAM-2.0-37/TAM/R/tam_mml_3pl_mstep_regression.R      |   97 ++--
 TAM-2.0-37/TAM/R/tam_mml_3pl_skillspace.R            |only
 TAM-2.0-37/TAM/R/tam_mml_3pl_variance_fixed.R        |only
 TAM-2.0-37/TAM/R/tam_mml_calc_prob.R                 |only
 TAM-2.0-37/TAM/R/tam_mml_mstep_xsi.R                 |    4 
 TAM-2.0-37/TAM/R/tam_normalize_matrix_rows.R         |only
 TAM-2.0-37/TAM/R/tam_packageinfo.R                   |only
 TAM-2.0-37/TAM/R/tam_print_call.R                    |only
 TAM-2.0-37/TAM/R/tam_rsessinfo.R                     |only
 TAM-2.0-37/TAM/R/tam_stud_prior.R                    |only
 TAM-2.0-37/TAM/R/tam_stud_prior_multiple_groups.R    |only
 TAM-2.0-37/TAM/R/tam_thurstonian_threshold.R         |    2 
 TAM-2.0-37/TAM/R/tamaanify.modelprior.R              |   49 +-
 TAM-2.0-37/TAM/R/tampv2datalist.R                    |   14 
 TAM-2.0-37/TAM/R/zzz.R                               |    8 
 TAM-2.0-37/TAM/inst/CITATION                         |    6 
 TAM-2.0-37/TAM/inst/NEWS                             |   34 +
 TAM-2.0-37/TAM/man/TAM-defunct.Rd                    |only
 TAM-2.0-37/TAM/man/TAM-package.Rd                    |    2 
 TAM-2.0-37/TAM/man/TAM-utilities.Rd                  |only
 TAM-2.0-37/TAM/man/cfa.extract.itempars.Rd           |    2 
 TAM-2.0-37/TAM/man/data.geiser.Rd                    |   17 
 TAM-2.0-37/TAM/man/data.timssAusTwn.Rd               |    6 
 TAM-2.0-37/TAM/man/tam.jml.Rd                        |   53 +-
 TAM-2.0-37/TAM/man/tam.mml.3pl.Rd                    |   29 -
 TAM-2.0-37/TAM/man/tam.mml.Rd                        |   27 -
 TAM-2.0-37/TAM/src/RcppExports.cpp                   |   14 
 TAM-2.0-37/TAM/src/init.c                            |    2 
 TAM-2.0-37/TAM/src/tam_helper_ccode.cpp              |   47 ++
 89 files changed, 822 insertions(+), 1377 deletions(-)

More information about TAM at CRAN
Permanent link

New package ROI.plugin.clp with initial version 0.1
Package: ROI.plugin.clp
Version: 0.1
Date: 2017-04-10
Title: 'Clp (Coin-or linear programming)' Plugin for the 'R' Optimization Interface
Authors@R: c(person("Benoit", "Thieurmel", role = c("aut", "cre"), email = "benoit.thieurmel@datastorm.fr"))
Description: Enhances the R Optimization Infrastructure (ROI) package by registering the COIN-OR Clp open-source solver from the COIN-OR suite <https://projects.coin-or.org/>. It allows for solving linear programming with continuous objective variables keeping sparse constraints definition.
Imports: methods, stats, ROI (>= 0.2-1), clpAPI, slam, Matrix
License: EPL
URL: https://github.com/datastorm-open/ROI.plugin.clp, https://projects.coin-or.org/Clp
NeedsCompilation: no
RoxygenNote: 6.0.1
Suggests: testthat
Packaged: 2017-04-12 14:24:22 UTC; Datastorm
Author: Benoit Thieurmel [aut, cre]
Maintainer: Benoit Thieurmel <benoit.thieurmel@datastorm.fr>
Repository: CRAN
Date/Publication: 2017-04-12 14:40:48 UTC

More information about ROI.plugin.clp at CRAN
Permanent link

Package openair updated to version 2.1-0 with previous version 2.0-0 dated 2016-11-23

Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air pollution data. Data are typically hourly time series and both monitoring data and dispersion model output can be analysed. Many functions can also be applied to other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre], Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>

Diff between openair versions 2.0-0 dated 2016-11-23 and 2.1-0 dated 2017-04-12

 DESCRIPTION                 |   14 +-
 MD5                         |  133 +++++++++----------
 NAMESPACE                   |    5 
 R/TheilSen.R                |    7 +
 R/aqStats.R                 |    8 -
 R/percentileRose.R          |  307 +++++++++++++++++++++++---------------------
 R/polarPlot.R               |    4 
 R/quickText.R               |    2 
 R/scatterPlot.R             |   28 ++--
 R/trajCluster.R             |    2 
 R/utilities.R               |  116 +++++++++++++++-
 R/windRose.R                |   11 +
 README.md                   |    4 
 man/TaylorDiagram.Rd        |    7 -
 man/TheilSen.Rd             |    7 -
 man/airbaseFindCode.Rd      |    7 -
 man/airbaseInfo.Rd          |    7 -
 man/airbaseSplice.Rd        |    1 
 man/airbaseStats.Rd         |    1 
 man/aqStats.Rd              |    1 
 man/binData.Rd              |only
 man/bootMeanDF.Rd           |only
 man/calcFno2.Rd             |    7 -
 man/calcPercentile.Rd       |    7 -
 man/calendarPlot.Rd         |    7 -
 man/conditionalEval.Rd      |    7 -
 man/conditionalQuantile.Rd  |    7 -
 man/corPlot.Rd              |    9 -
 man/cutData.Rd              |    1 
 man/drawOpenKey.Rd          |   13 -
 man/import.Rd               |    7 -
 man/importADMS.Rd           |    7 -
 man/importAURN.Rd           |    7 -
 man/importAURNCsv.Rd        |    7 -
 man/importAirbase.Rd        |    7 -
 man/importKCL.Rd            |    7 -
 man/importMeta.Rd           |    7 -
 man/importSAQN.Rd           |    7 -
 man/importTraj.Rd           |    7 -
 man/kernelExceed.Rd         |    7 -
 man/linearRelation.Rd       |    7 -
 man/modStats.Rd             |    7 -
 man/mydata.Rd               |    1 
 man/openColours.Rd          |    7 -
 man/openair.Rd              |    7 -
 man/percentileRose.Rd       |  267 ++++++++++++++++++++------------------
 man/polarAnnulus.Rd         |    7 -
 man/polarCluster.Rd         |    7 -
 man/polarFreq.Rd            |    7 -
 man/polarPlot.Rd            |    7 -
 man/quickText.Rd            |    1 
 man/rollingMean.Rd          |    1 
 man/scatterPlot.Rd          |    9 -
 man/selectByDate.Rd         |    1 
 man/selectRunning.Rd        |    1 
 man/smoothTrend.Rd          |    7 -
 man/splitByDate.Rd          |    1 
 man/summaryPlot.Rd          |    1 
 man/timeAverage.Rd          |    7 -
 man/timePlot.Rd             |    7 -
 man/timeProp.Rd             |    7 -
 man/timeVariation.Rd        |    7 -
 man/trajCluster.Rd          |    7 -
 man/trajLevel.Rd            |    7 -
 man/trajPlot.Rd             |    7 -
 man/trendLevel.Rd           |    7 -
 man/windRose.Rd             |   11 -
 src/registerDynamicSymbol.c |only
 tools                       |only
 69 files changed, 667 insertions(+), 546 deletions(-)

More information about openair at CRAN
Permanent link

Package liftr updated to version 0.5 with previous version 0.4 dated 2016-08-05

Title: Containerize R Markdown Documents
Description: Persistent reproducible reporting by containerization of R Markdown documents.
Author: Nan Xiao [aut, cre], Miaozhu Li [ctb], Tengfei Yin [ctb]
Maintainer: Nan Xiao <me@nanx.me>

Diff between liftr versions 0.4 dated 2016-08-05 and 0.5 dated 2017-04-12

 liftr-0.4/liftr/R/drender.R                     |only
 liftr-0.4/liftr/inst/Dockerfile.Rmd             |only
 liftr-0.4/liftr/inst/Rabixfile.Rmd              |only
 liftr-0.4/liftr/inst/biocpkg.Rmd                |only
 liftr-0.4/liftr/inst/cranpkg.Rmd                |only
 liftr-0.4/liftr/inst/docker.Rmd                 |only
 liftr-0.4/liftr/inst/ghpkg.Rmd                  |only
 liftr-0.4/liftr/inst/pandoc.Rmd                 |only
 liftr-0.4/liftr/inst/rabix.Rmd                  |only
 liftr-0.4/liftr/inst/syslib.Rmd                 |only
 liftr-0.4/liftr/inst/texlive.Rmd                |only
 liftr-0.4/liftr/man/drender.Rd                  |only
 liftr-0.5/liftr/DESCRIPTION                     |   29 -
 liftr-0.5/liftr/LICENSE                         |only
 liftr-0.5/liftr/MD5                             |   68 +-
 liftr-0.5/liftr/NAMESPACE                       |    6 
 liftr-0.5/liftr/NEWS.md                         |   61 +-
 liftr-0.5/liftr/R/addins.R                      |only
 liftr-0.5/liftr/R/lift.R                        |  219 ++-------
 liftr-0.5/liftr/R/liftr-package.R               |   16 
 liftr-0.5/liftr/R/parsers.R                     |only
 liftr-0.5/liftr/R/purge.R                       |only
 liftr-0.5/liftr/R/render_docker.R               |only
 liftr-0.5/liftr/R/utils.R                       |   55 +-
 liftr-0.5/liftr/README.md                       |   38 +
 liftr-0.5/liftr/TODO                            |only
 liftr-0.5/liftr/build/vignette.rds              |binary
 liftr-0.5/liftr/inst/doc/liftr-intro.R          |   23 -
 liftr-0.5/liftr/inst/doc/liftr-intro.Rmd        |  228 +++++----
 liftr-0.5/liftr/inst/doc/liftr-intro.html       |  551 +++++++++++++++---------
 liftr-0.5/liftr/inst/examples                   |only
 liftr-0.5/liftr/inst/rstudio                    |only
 liftr-0.5/liftr/inst/templates                  |only
 liftr-0.5/liftr/man/addin_lift.Rd               |only
 liftr-0.5/liftr/man/addin_lift_render_docker.Rd |only
 liftr-0.5/liftr/man/addin_purge_image.Rd        |only
 liftr-0.5/liftr/man/lift.Rd                     |   48 +-
 liftr-0.5/liftr/man/liftr-package.Rd            |   13 
 liftr-0.5/liftr/man/purge_container.Rd          |only
 liftr-0.5/liftr/man/purge_image.Rd              |only
 liftr-0.5/liftr/man/render_docker.Rd            |only
 liftr-0.5/liftr/vignettes/header.html           |    2 
 liftr-0.5/liftr/vignettes/liftr-intro.Rmd       |  228 +++++----
 liftr-0.5/liftr/vignettes/liftr.css             |   95 +++-
 44 files changed, 972 insertions(+), 708 deletions(-)

More information about liftr at CRAN
Permanent link

Package imp4p updated to version 0.3 with previous version 0.2 dated 2016-10-25

Title: Imputation for Proteomics
Description: Functions to analyse missing value mechanisms and to impute data sets in the context of bottom-up MS-based proteomics.
Author: Quentin Giai Gianetto
Maintainer: Quentin Giai Gianetto <quentin2g@yahoo.fr>

Diff between imp4p versions 0.2 dated 2016-10-25 and 0.3 dated 2017-04-12

 DESCRIPTION                   |   11 ++-
 MD5                           |   65 ++++++++++++++---------
 NAMESPACE                     |    2 
 R/RcppExports.R               |only
 R/estim_bound.R               |   10 +--
 R/estim_mix.R                 |   88 ++++++++++++++++++-------------
 R/impute_igcda.R              |   14 +----
 R/impute_mi.R                 |   39 ++++++--------
 R/impute_slsa.R               |  100 ++++++++++++++++++------------------
 R/mi_mix.R                    |  116 +++++++++++++++++++++---------------------
 R/sim_data.R                  |   85 +++++++++++++++---------------
 man/estim_bound.Rd            |    8 +-
 man/estim_mix.Rd              |   58 ++++++++++-----------
 man/fast_apply_nb_na.Rd       |only
 man/fast_apply_nb_not_na.Rd   |only
 man/fast_apply_sd_na_rm_T.Rd  |only
 man/fast_apply_sum_na_rm_T.Rd |only
 man/fast_sim.Rd               |only
 man/impute_igcda.Rd           |    6 +-
 man/impute_mi.Rd              |   16 ++---
 man/impute_mix.Rd             |   12 ++--
 man/impute_pa.Rd              |    4 -
 man/impute_rand.Rd            |    6 +-
 man/impute_slsa.Rd            |    6 +-
 man/mi_mix.Rd                 |    4 -
 man/miss_mcar_process.Rd      |    2 
 man/miss_mnar_process.Rd      |    2 
 man/miss_total_process.Rd     |    2 
 man/pi_mcar_karpievitch.Rd    |    2 
 man/pi_mcar_logit.Rd          |    2 
 man/pi_mcar_probit.Rd         |    2 
 man/proba_mcar_tab.Rd         |   12 +++-
 man/sim_data.Rd               |   10 +--
 src                           |only
 34 files changed, 359 insertions(+), 325 deletions(-)

More information about imp4p at CRAN
Permanent link

Package bayesplot updated to version 1.2.0 with previous version 1.1.0 dated 2016-12-20

Title: Plotting for Bayesian Models
Description: Plotting functions for posterior analysis, model checking, and MCMC diagnostics. The package is designed not only to provide convenient functionality for users, but also a common set of functions that can be easily used by developers working on a variety of R packages for Bayesian modeling, particularly (but not exclusively) packages interfacing with Stan.
Author: Jonah Gabry [aut, cre], Paul-Christian Buerkner [ctb]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>

Diff between bayesplot versions 1.1.0 dated 2016-12-20 and 1.2.0 dated 2017-04-12

 DESCRIPTION                                 |   18 
 MD5                                         |  157 ++---
 NAMESPACE                                   |   18 
 NEWS.md                                     |   56 +
 R/available-module-functions.R              |   66 +-
 R/bayesplot-colors.R                        |   70 +-
 R/bayesplot-helpers.R                       |   71 ++
 R/helpers-gg.R                              |    3 
 R/helpers-mcmc.R                            |   16 
 R/helpers-ppc.R                             |   15 
 R/helpers-testthat.R                        |    3 
 R/mcmc-alg-nuts.R                           |  310 ++++------
 R/mcmc-combo.R                              |   10 
 R/mcmc-diagnostics.R                        |   13 
 R/mcmc-distributions.R                      |    3 
 R/mcmc-intervals.R                          |   11 
 R/mcmc-overview.R                           |    6 
 R/mcmc-recover.R                            |  202 ++++++
 R/mcmc-scatterplots.R                       |  833 ++++++++++++++++++++++++----
 R/mcmc-traces.R                             |   52 +
 R/ppc-discrete.R                            |only
 R/ppc-distributions.R                       |   80 ++
 R/ppc-intervals.R                           |   69 +-
 R/ppc-loo.R                                 |only
 R/ppc-overview.R                            |   25 
 build/vignette.rds                          |binary
 inst/CITATION                               |only
 inst/doc/MCMC-diagnostics.R                 |    4 
 inst/doc/MCMC-diagnostics.Rmd               |   55 -
 inst/doc/MCMC-diagnostics.html              |  102 +--
 inst/doc/MCMC.R                             |   14 
 inst/doc/MCMC.Rmd                           |   39 -
 inst/doc/MCMC.html                          |   62 +-
 inst/doc/PPC.R                              |   20 
 inst/doc/PPC.Rmd                            |   36 -
 inst/doc/PPC.html                           |   97 +--
 man/MCMC-combos.Rd                          |    1 
 man/MCMC-diagnostics.Rd                     |   27 
 man/MCMC-distributions.Rd                   |   37 -
 man/MCMC-intervals.Rd                       |   43 +
 man/MCMC-nuts.Rd                            |   55 +
 man/MCMC-overview.Rd                        |   10 
 man/MCMC-recover.Rd                         |   54 +
 man/MCMC-scatterplots.Rd                    |  292 ++++++++-
 man/MCMC-traces.Rd                          |   48 +
 man/PPC-discrete.Rd                         |only
 man/PPC-distributions.Rd                    |   42 +
 man/PPC-errors.Rd                           |   10 
 man/PPC-intervals.Rd                        |   15 
 man/PPC-loo.Rd                              |only
 man/PPC-overview.Rd                         |   34 -
 man/PPC-scatterplots.Rd                     |    7 
 man/PPC-test-statistics.Rd                  |   11 
 man/available_ppc.Rd                        |   14 
 man/bayesplot-colors.Rd                     |   41 -
 man/bayesplot-extractors.Rd                 |   13 
 man/bayesplot-helpers.Rd                    |   76 ++
 man/bayesplot-package.Rd                    |    4 
 man/bayesplot_grid.Rd                       |    1 
 man/example-data.Rd                         |    7 
 man/pp_check.Rd                             |    1 
 man/theme_default.Rd                        |    1 
 tests/testthat.R                            |    1 
 tests/testthat/Rplots.pdf                   |binary
 tests/testthat/test-aesthetics.R            |   24 
 tests/testthat/test-available_ppc.R         |    6 
 tests/testthat/test-bayesplot_grid.R        |    1 
 tests/testthat/test-convenience-functions.R |   44 +
 tests/testthat/test-extractors.R            |    6 
 tests/testthat/test-helpers-mcmc.R          |    9 
 tests/testthat/test-helpers-ppc.R           |   17 
 tests/testthat/test-mcmc-nuts.R             |   14 
 tests/testthat/test-mcmc-recover.R          |   23 
 tests/testthat/test-mcmc-scatterplots.R     |  283 ++++++++-
 tests/testthat/test-mcmc-traces.R           |    9 
 tests/testthat/test-ppc-discrete.R          |only
 tests/testthat/test-ppc-distributions.R     |    1 
 tests/testthat/test-ppc-intervals.R         |    4 
 tests/testthat/test-ppc-loo.R               |only
 vignettes/MCMC-diagnostics.Rmd              |   55 -
 vignettes/MCMC.Rmd                          |   39 -
 vignettes/PPC.Rmd                           |   36 -
 vignettes/children/SETTINGS-knitr.txt       |    2 
 83 files changed, 2913 insertions(+), 1041 deletions(-)

More information about bayesplot at CRAN
Permanent link

New package SeerMapperEast with initial version 1.2.0
Package: SeerMapperEast
Type: Package
Version: 1.2.0
Date: 2017-04-10
Title: Supplemental U. S. 2000 Census Tract Boundaries for 23 Eastern States without Seer Registries
Author: "Jim Pearson" <jpearson@statnetconsulting.com> with data provided by "U. S. Census Bureau" <geo.tiger@census.gov>
Maintainer: "Jim Pearson" <jpearson@statnetconsulting.com>
Depends: R (>= 3.2.0)
Imports: sp
Suggests:
Description: Provides supplemental 2000 census tract boundaries for the 23 states without Seer Registries that are east of the Mississippi river for use with the 'SeerMapper' package. The data contained in this package is derived from U. S. Census data and is in the public domain.
License: GPL (>= 2)
LazyData: no
LazyLoad: no
BuildResaveData: yes
ByteCompile: yes
NeedsCompilation: no
Packaged: 2017-04-12 07:09:24 UTC; jpearson
Repository: CRAN
Date/Publication: 2017-04-12 14:15:09 UTC

More information about SeerMapperEast at CRAN
Permanent link

Package party updated to version 1.2-3 with previous version 1.2-2 dated 2017-02-27

Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning. The core of the package is ctree(), an implementation of conditional inference trees which embed tree-structured regression models into a well defined theory of conditional inference procedures. This non-parametric class of regression trees is applicable to all kinds of regression problems, including nominal, ordinal, numeric, censored as well as multivariate response variables and arbitrary measurement scales of the covariates. Based on conditional inference trees, cforest() provides an implementation of Breiman's random forests. The function mob() implements an algorithm for recursive partitioning based on parametric models (e.g. linear models, GLMs or survival regression) employing parameter instability tests for split selection. Extensible functionality for visualizing tree-structured regression models is available. The methods are described in Hothorn et al. (2006) <doi:10.1198/106186006X133933>, Zeileis et al. (2008) <doi:10.1198/106186008X319331> and Strobl et al. (2007) <doi:10.1186/1471-2105-8-25>.
Author: Torsten Hothorn [aut, cre], Kurt Hornik [aut], Carolin Strobl [aut], Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

Diff between party versions 1.2-2 dated 2017-02-27 and 1.2-3 dated 2017-04-12

 DESCRIPTION                       |   10 +++++-----
 MD5                               |   24 ++++++++++++------------
 build/vignette.rds                |binary
 inst/NEWS                         |   17 +++++++++++++++++
 inst/doc/MOB.pdf                  |binary
 inst/doc/party.pdf                |binary
 src/Convenience.c                 |    4 +++-
 src/IndependenceTest.c            |    8 +++++++-
 src/Predict.c                     |   24 +++++++++---------------
 src/Splits.c                      |    4 +++-
 src/SurrogateSplits.c             |    4 +++-
 src/Utils.c                       |    7 ++++++-
 tests/Examples/party-Ex.Rout.save |   18 +++++++++---------
 13 files changed, 74 insertions(+), 46 deletions(-)

More information about party at CRAN
Permanent link

New package optrcdmaeAT with initial version 1.0.0
Package: optrcdmaeAT
Version: 1.0.0
Date: 2017-04-12
Title: Optimal Row-Column Designs for Two-Colour cDNA Microarray Experiments
Author: Legesse Kassa Debusho, Dibaba Bayisa Gemechu, and Linda Haines
Maintainer: Dibaba Bayisa Gemechu <diboobayu@gmail.com>
Depends: R (>= 3.3.2), MASS, Matrix, igraph, tcltk
License: GPL-2
Description: Computes A-, MV-, D- and E-optimal or near-optimal row-column designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all pairwise treatment contrasts. The algorithms used in this package are based on the array exchange and treatment exchange algorithms adopted from Debusho, Gemechu and Haines (2016, unpublished) algorithms after adjusting for the row-column designs setup. The package also provides an optional method of using the graphical user interface (GUI) R package tcltk to ensure that it is user friendly.
NeedsCompilation: no
Packaged: 2017-04-12 11:01:58 UTC; Dibaba B Gemechu
Repository: CRAN
Date/Publication: 2017-04-12 14:24:01 UTC

More information about optrcdmaeAT at CRAN
Permanent link

Package nortestARMA updated to version 1.0.1 with previous version 1.0 dated 2016-05-04

Title: Neyman Smooth Tests of Normality for the Errors of ARMA Models
Description: Tests the goodness-of-fit to the Normal distribution for the errors of an ARMA model.
Author: Pierre Duchesne and Pierre Lafaye de Micheaux
Maintainer: Pierre Lafaye de Micheaux <lafaye@unsw.edu.au>

Diff between nortestARMA versions 1.0 dated 2016-05-04 and 1.0.1 dated 2017-04-12

 DESCRIPTION                 |   10 +++++-----
 MD5                         |   29 ++++++++++++++++-------------
 NAMESPACE                   |    2 +-
 inst                        |only
 src/calcstat.cpp            |    2 ++
 src/polys/H1.cpp            |   18 ++++++------------
 src/polys/H10.cpp           |   18 ++++++------------
 src/polys/H2.cpp            |   16 +++++-----------
 src/polys/H3.cpp            |   18 ++++++------------
 src/polys/H4.cpp            |   18 ++++++------------
 src/polys/H5.cpp            |   18 ++++++------------
 src/polys/H6.cpp            |   18 ++++++------------
 src/polys/H7.cpp            |   18 ++++++------------
 src/polys/H8.cpp            |   18 ++++++------------
 src/polys/H9.cpp            |   18 ++++++------------
 src/registerDynamicSymbol.c |only
 16 files changed, 83 insertions(+), 138 deletions(-)

More information about nortestARMA at CRAN
Permanent link

New package marcher with initial version 0.0-2
Package: marcher
Type: Package
Title: Migration and Range Change Estimation in R
Version: 0.0-2
Authors@R: c(person("Eliezer", "Gurarie", role = c("aut", "cre"), email = "egurarie@umd.edu"), person("Farid", "Cheraghi", role = "aut"))
Description: A set of tools for likelihood-based estimation, model selection and testing of two- and three-range shift and migration models for animal movement data as described in Gurarie et al. (2017) <doi: 10.1111/1365-2656.12674>. Provided movement data (X, Y and Time), including irregularly sampled data, functions estimate the time, duration and location of one or two range shifts, as well as the ranging area and auto-correlation structure of the movment. Tests assess, for example, whether the shift was "significant", and whether a two-shift migration was a true return migration.
License: GPL-2
Depends: R (>= 3.3.0)
Imports: stats, Matrix, graphics, grDevices, plyr, mvtnorm, RColorBrewer, minpack.lm, zoo, numDeriv, magrittr, scales
VignetteBuilder: knitr
BugReports: https://github.com/EliGurarie/marcher/issues
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown, lubridate
NeedsCompilation: no
Packaged: 2017-04-12 02:31:07 UTC; Farid
Author: Eliezer Gurarie [aut, cre], Farid Cheraghi [aut]
Maintainer: Eliezer Gurarie <egurarie@umd.edu>
Repository: CRAN
Date/Publication: 2017-04-12 14:26:18 UTC

More information about marcher at CRAN
Permanent link

Package CompQuadForm updated to version 1.4.3 with previous version 1.4.2 dated 2016-09-19

Title: Distribution Function of Quadratic Forms in Normal Variables
Description: Computes the distribution function of quadratic forms in normal variables using Imhof's method, Davies's algorithm, Farebrother's algorithm or Liu et al.'s algorithm.
Author: P. Lafaye de Micheaux
Maintainer: P. Lafaye de Micheaux <lafaye@unsw.edu.au>

Diff between CompQuadForm versions 1.4.2 dated 2016-09-19 and 1.4.3 dated 2017-04-12

 DESCRIPTION                 |   10 +++++-----
 MD5                         |   23 ++++++++++++-----------
 NAMESPACE                   |    2 +-
 TODO                        |   26 ++++++++++++++++++++++++++
 inst/HISTORY                |   10 ++++++++++
 man/davies.Rd               |    4 ++--
 man/farebrother.Rd          |    7 ++++---
 man/imhof.Rd                |    7 ++++---
 man/liu.Rd                  |    5 +++--
 src/imhof.cpp               |    5 +++++
 src/qfc.cpp                 |    9 +++++++++
 src/registerDynamicSymbol.c |only
 src/ruben.cpp               |    6 ++++++
 13 files changed, 87 insertions(+), 27 deletions(-)

More information about CompQuadForm at CRAN
Permanent link

New package BisRNA with initial version 0.2.1
Package: BisRNA
Type: Package
Title: Analysis of RNA Cytosine-5 Methylation
Version: 0.2.1
Author: Carine Legrand
Maintainer: Carine Legrand <c.legrand@dkfz.de>
Description: Bisulfite-treated RNA non-conversion in a set of samples is analysed as follows: each sample's Poisson parameter is estimated, and non-conversion p-values are calculated for each sample and adjusted for multiple testing. Finally, combined non-conversion p-value and standard error of the non-conversion are calculated on the intersection of the set of samples. A low combined non-conversion p-value points to methylation of the corresponding RNA cytosine, or another event blocking bisulfite conversion.
Date: 2017-04-11
License: GPL (>= 2)
LazyData: TRUE
Depends: R (>= 3.3.2)
Imports: MASS, knitr, graphics, stats, utils
Suggests: IHW, testthat
NeedsCompilation: no
Packaged: 2017-04-12 10:55:19 UTC; legrand
Repository: CRAN
Date/Publication: 2017-04-12 14:13:34 UTC

More information about BisRNA at CRAN
Permanent link

Package stddiff updated to version 2.0 with previous version 1.0 dated 2016-06-16

Title: Calculate the Standardized Difference for Numeric, Binary and Category Variables
Description: Contains three main functions including stddiff.numeric(), stddiff.binary() and stddiff.category(). These are used to calculate the standardized difference between two groups. It is especially used to evaluate the balance between two groups before and after propensity score matching.
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>

Diff between stddiff versions 1.0 dated 2016-06-16 and 2.0 dated 2017-04-12

 DESCRIPTION    |   10 ++--
 MD5            |    8 +--
 NAMESPACE      |    1 
 R/stddiff.R    |  133 ++++++++++++++++++++++++++++-----------------------------
 man/stddiff.Rd |   18 ++++---
 5 files changed, 87 insertions(+), 83 deletions(-)

More information about stddiff at CRAN
Permanent link

Package r.jive updated to version 2.1 with previous version 1.7 dated 2016-07-25

Title: Perform JIVE Decomposition for Multi-Source Data
Description: Performs the JIVE decomposition on a list of data sets when the data share a dimension, returning low-rank matrices that capture the joint and individual structure of the data [O'Connell, MJ and Lock, EF (2016) <doi:10.1093/bioinformatics/btw324>]. It provides two methods of rank selection when the rank is unknown, a permutation test and a BIC selection algorithm. Also included in the package are three plotting functions for visualizing the variance attributed to each data source: a bar plot that shows the percentages of the variability attributable to joint and individual structure, a heatmap that shows the structure of the variability, and principal component plots.
Author: Michael J. O'Connell and Eric F. Lock
Maintainer: Michael J. O'Connell <oconn725@umn.edu>

Diff between r.jive versions 1.7 dated 2016-07-25 and 2.1 dated 2017-04-12

 DESCRIPTION           |   14 +++++++-------
 MD5                   |   14 ++++++++------
 NAMESPACE             |    2 +-
 R/jive.predict.r      |only
 R/jive.r              |   21 ++++++++++++++++++---
 data/SimResults.rda   |binary
 man/jive.Rd           |    3 ++-
 man/jive.predict.Rd   |only
 man/r.jive-package.Rd |    6 +++---
 9 files changed, 39 insertions(+), 21 deletions(-)

More information about r.jive at CRAN
Permanent link

Package red updated to version 1.0.1 with previous version 1.0.0 dated 2017-02-23

Title: IUCN Redlisting Tools
Description: Includes algorithms to facilitate the assessment of extinction risk of species according to the IUCN (International Union for Conservation of Nature, see <http://www.iucn.org> for more information) red list criteria.
Author: Pedro Cardoso
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>

Diff between red versions 1.0.0 dated 2017-02-23 and 1.0.1 dated 2017-04-12

 DESCRIPTION             |   14 +++++-----
 MD5                     |   66 ++++++++++++++++++++++++------------------------
 NAMESPACE               |    1 
 R/red.R                 |   27 ++++++-------------
 man/aoo.Rd              |    1 
 man/countries.Rd        |    1 
 man/elevation.Rd        |    1 
 man/eoo.Rd              |    1 
 man/kml.Rd              |    1 
 man/map.draw.Rd         |    1 
 man/map.easy.Rd         |    1 
 man/map.habitat.Rd      |    1 
 man/map.points.Rd       |    1 
 man/map.sdm.Rd          |    1 
 man/outliers.Rd         |    1 
 man/raster.clean.Rd     |    1 
 man/raster.east.Rd      |    1 
 man/raster.lat.Rd       |    1 
 man/raster.long.Rd      |    1 
 man/raster.north.Rd     |    1 
 man/raster.read.Rd      |    1 
 man/raster.reduce.Rd    |    1 
 man/records.Rd          |    1 
 man/red.distribution.Rd |    1 
 man/red.getDir.Rd       |    1 
 man/red.layers.Rd       |    1 
 man/red.records.Rd      |    1 
 man/red.setDir.Rd       |    1 
 man/red.setup.Rd        |    1 
 man/rli.Rd              |    1 
 man/rli.multi.Rd        |    1 
 man/rli.sampled.Rd      |    1 
 man/thin.Rd             |    1 
 man/worldborders.Rd     |    1 
 34 files changed, 50 insertions(+), 88 deletions(-)

More information about red at CRAN
Permanent link

Package OSMscale updated to version 0.5.1 with previous version 0.4.1 dated 2017-01-19

Title: Add a Scale Bar to 'OpenStreetMap' Plots
Description: Functionality to handle and project lat-long coordinates, easily download background maps and add a correct scale bar to 'OpenStreetMap' plots in any map projection.
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>

Diff between OSMscale versions 0.4.1 dated 2017-01-19 and 0.5.1 dated 2017-04-12

 DESCRIPTION             |   13 +--
 MD5                     |   48 +++++++------
 NAMESPACE               |    3 
 NEWS                    |   12 +++
 R/OSMscale-package.R    |    4 -
 R/checkLL.R             |  154 ++++++++++++++++++++----------------------
 R/earthDist.R           |  174 ++++++++++++++++++++++--------------------------
 R/maxEarthDist.R        |only
 R/pointsMap.R           |   12 ++-
 R/projectPoints.R       |    4 -
 R/scaleBar.R            |   50 +++++++++++--
 README.md               |   43 ++++++++---
 man/OSMscale-package.Rd |   13 +--
 man/biketrack.Rd        |    1 
 man/checkLL.Rd          |   23 ++----
 man/degree.Rd           |    7 -
 man/earthDist.Rd        |   29 +-------
 man/equidistPoints.Rd   |    7 -
 man/maxEarthDist.Rd     |only
 man/pointsMap.Rd        |   20 +++--
 man/proj.Rd             |   13 +--
 man/projectPoints.Rd    |   11 +--
 man/randomPoints.Rd     |    7 -
 man/scaleBar.Rd         |   30 ++++++--
 man/triangleArea.Rd     |    7 -
 tests                   |only
 26 files changed, 368 insertions(+), 317 deletions(-)

More information about OSMscale at CRAN
Permanent link

Package IsoriX updated to version 0.5 with previous version 0.4-1 dated 2016-09-11

Title: Isoscape Computation and Inference of Spatial Origins using Mixed Models
Description: Building isoscapes using mixed models and inferring the geographic origin of organisms based on their isotopic ratios. This package is essentially a simplified interface to several other packages. It uses 'spaMM' for fitting and predicting isoscapes, and assigning an organism's origin depending on its isotopic ratio. 'IsoriX' also relies heavily on the package 'rasterVis' for plotting the maps using lattice.
Author: Alexandre Courtiol [aut, cre], François Rousset [aut], Stephanie Kramer-Schadt [aut]
Maintainer: Alexandre Courtiol <alexandre.courtiol@gmail.com>

Diff between IsoriX versions 0.4-1 dated 2016-09-11 and 0.5 dated 2017-04-12

 IsoriX-0.4-1/IsoriX/R/Calibfit.R                     |only
 IsoriX-0.4-1/IsoriX/R/GetElev.R                      |only
 IsoriX-0.4-1/IsoriX/R/Isofit.R                       |only
 IsoriX-0.4-1/IsoriX/R/Isorix.R                       |only
 IsoriX-0.4-1/IsoriX/R/Isoscape.R                     |only
 IsoriX-0.4-1/IsoriX/R/Isosim.R                       |only
 IsoriX-0.4-1/IsoriX/R/QueryGNIP.R                    |only
 IsoriX-0.4-1/IsoriX/R/RElevate.R                     |only
 IsoriX-0.4-1/IsoriX/R/plot.isorix.R                  |only
 IsoriX-0.4-1/IsoriX/R/plot.isoscape.R                |only
 IsoriX-0.4-1/IsoriX/R/print.methods.R                |only
 IsoriX-0.4-1/IsoriX/data/GNIP_Europe.rda             |only
 IsoriX-0.4-1/IsoriX/data/GNIP_Model.rda              |only
 IsoriX-0.4-1/IsoriX/data/GNIP_World.rda              |only
 IsoriX-0.4-1/IsoriX/data/assignmentdata.rda          |only
 IsoriX-0.4-1/IsoriX/data/calibrationdata.rda         |only
 IsoriX-0.4-1/IsoriX/data/elevationrastersmall.rda    |only
 IsoriX-0.4-1/IsoriX/data/isorixpalette.rda           |only
 IsoriX-0.4-1/IsoriX/data/isoscapepalette.rda         |only
 IsoriX-0.4-1/IsoriX/data/worldcountries.rda          |only
 IsoriX-0.4-1/IsoriX/man/Calibfit.Rd                  |only
 IsoriX-0.4-1/IsoriX/man/GNIP_Europe.Rd               |only
 IsoriX-0.4-1/IsoriX/man/GNIP_Model.Rd                |only
 IsoriX-0.4-1/IsoriX/man/GNIP_World.Rd                |only
 IsoriX-0.4-1/IsoriX/man/GetElev.Rd                   |only
 IsoriX-0.4-1/IsoriX/man/Isofit.Rd                    |only
 IsoriX-0.4-1/IsoriX/man/Isorix.Rd                    |only
 IsoriX-0.4-1/IsoriX/man/Isoscape.Rd                  |only
 IsoriX-0.4-1/IsoriX/man/Isosim.Rd                    |only
 IsoriX-0.4-1/IsoriX/man/QueryGNIP.Rd                 |only
 IsoriX-0.4-1/IsoriX/man/RElevate.Rd                  |only
 IsoriX-0.4-1/IsoriX/man/assignmentdata.Rd            |only
 IsoriX-0.4-1/IsoriX/man/calibrationdata.Rd           |only
 IsoriX-0.4-1/IsoriX/man/elevationrastersmall.Rd      |only
 IsoriX-0.4-1/IsoriX/man/isorixpalette.Rd             |only
 IsoriX-0.4-1/IsoriX/man/print.methods.Rd             |only
 IsoriX-0.5/IsoriX/DESCRIPTION                        |   26 +-
 IsoriX-0.5/IsoriX/MD5                                |  102 ++++-----
 IsoriX-0.5/IsoriX/NAMESPACE                          |    4 
 IsoriX-0.5/IsoriX/R/IsoriX-internal.R                |  138 ++++++-------
 IsoriX-0.5/IsoriX/R/calibfit.R                       |only
 IsoriX-0.5/IsoriX/R/getelev.R                        |only
 IsoriX-0.5/IsoriX/R/isofit.R                         |only
 IsoriX-0.5/IsoriX/R/isorix.R                         |only
 IsoriX-0.5/IsoriX/R/isoscape.R                       |only
 IsoriX-0.5/IsoriX/R/isosim.R                         |only
 IsoriX-0.5/IsoriX/R/plot.methods.R                   |only
 IsoriX-0.5/IsoriX/R/queryGNIP.R                      |only
 IsoriX-0.5/IsoriX/R/relevate.R                       |only
 IsoriX-0.5/IsoriX/build/vignette.rds                 |binary
 IsoriX-0.5/IsoriX/data/Europefit.rda                 |only
 IsoriX-0.5/IsoriX/data/GNIPdata.rda                  |only
 IsoriX-0.5/IsoriX/data/assigndata.rda                |only
 IsoriX-0.5/IsoriX/data/calibdata.rda                 |only
 IsoriX-0.5/IsoriX/data/countries.rda                 |only
 IsoriX-0.5/IsoriX/data/datalist                      |   17 -
 IsoriX-0.5/IsoriX/data/elevraster.rda                |only
 IsoriX-0.5/IsoriX/data/isopalette1.rda               |only
 IsoriX-0.5/IsoriX/data/isopalette2.rda               |only
 IsoriX-0.5/IsoriX/inst/CITATION                      |   23 +-
 IsoriX-0.5/IsoriX/inst/NEWS.Rd                       |   42 +++-
 IsoriX-0.5/IsoriX/inst/doc/Saveplot.pdf              |binary
 IsoriX-0.5/IsoriX/inst/doc/Workflow.pdf              |binary
 IsoriX-0.5/IsoriX/inst/doc/exportGIS.pdf             |only
 IsoriX-0.5/IsoriX/inst/doc/exportGIS.pdf.asis        |only
 IsoriX-0.5/IsoriX/inst/doc/sources_for_Saveplot.Rmd  |   10 
 IsoriX-0.5/IsoriX/inst/doc/sources_for_Workflow.Rmd  |  116 +++++------
 IsoriX-0.5/IsoriX/inst/doc/sources_for_exportGIS.Rmd |only
 IsoriX-0.5/IsoriX/man/Europefit.Rd                   |only
 IsoriX-0.5/IsoriX/man/GNIPdata.Rd                    |only
 IsoriX-0.5/IsoriX/man/IsoriX-defunct.Rd              |only
 IsoriX-0.5/IsoriX/man/IsoriX-package.Rd              |   24 +-
 IsoriX-0.5/IsoriX/man/assigndata.Rd                  |only
 IsoriX-0.5/IsoriX/man/calibdata.Rd                   |only
 IsoriX-0.5/IsoriX/man/calibfit.Rd                    |only
 IsoriX-0.5/IsoriX/man/elevraster.Rd                  |only
 IsoriX-0.5/IsoriX/man/getelev.Rd                     |only
 IsoriX-0.5/IsoriX/man/isofit.Rd                      |only
 IsoriX-0.5/IsoriX/man/isopalettes.Rd                 |only
 IsoriX-0.5/IsoriX/man/isorix.Rd                      |only
 IsoriX-0.5/IsoriX/man/isoscape.Rd                    |only
 IsoriX-0.5/IsoriX/man/isosim.Rd                      |only
 IsoriX-0.5/IsoriX/man/oceanmask.Rd                   |   10 
 IsoriX-0.5/IsoriX/man/plot.methods.Rd                |  196 +++++++++----------
 IsoriX-0.5/IsoriX/man/queryGNIP.Rd                   |only
 IsoriX-0.5/IsoriX/man/relevate.Rd                    |only
 IsoriX-0.5/IsoriX/man/worldcountries.Rd              |   22 +-
 IsoriX-0.5/IsoriX/vignettes/exportGIS.pdf.asis       |only
 88 files changed, 380 insertions(+), 350 deletions(-)

More information about IsoriX at CRAN
Permanent link

Package fullfact updated to version 1.2 with previous version 1.1 dated 2016-12-17

Title: Full Factorial Breeding Analysis
Description: We facilitate the analysis of full factorial mating designs with mixed-effects models. The observed data functions extract the variance explained by random and fixed effects and provide their significance. We then calculate the additive genetic, nonadditive genetic, and maternal variance components explaining the phenotype. In particular, we integrate nonnormal error structures for estimating these components for nonnormal data types. The resampled data functions are used to produce bootstrap confidence intervals, which can then be plotted using a simple function. This package will facilitate the analyses of full factorial mating designs in R, especially for the analysis of binary, proportion, and/or count data types and for the ability to incorporate additional random and fixed effects and power analyses. The paper associated with the package including worked examples is: Houde ALS, Pitcher TE (2016) <doi:10.1002/ece3.1943>.
Author: Aimee Lee Houde [aut, cre], Trevor Pitcher [aut]
Maintainer: Aimee Lee Houde <aimee.lee.houde@gmail.com>

Diff between fullfact versions 1.1 dated 2016-12-17 and 1.2 dated 2017-04-12

 DESCRIPTION       |   12 ++++++------
 MD5               |    6 +++---
 NAMESPACE         |    7 ++-----
 build/partial.rdb |binary
 4 files changed, 11 insertions(+), 14 deletions(-)

More information about fullfact at CRAN
Permanent link

Package exampletestr updated to version 0.4.0 with previous version 0.3.0 dated 2017-03-18

Title: Help for Writing Unit Tests Based on Function Examples
Description: Take the examples written in your documentation of functions and use them to create shells (skeletons which must be manually completed by the user) of test files to be tested with the 'testthat' package.
Author: Rory Nolan [aut, cre], Sergi Padilla-Parra [ths]
Maintainer: Rory Nolan <rorynoolan@gmail.com>

Diff between exampletestr versions 0.3.0 dated 2017-03-18 and 0.4.0 dated 2017-04-12

 exampletestr-0.3.0/exampletestr/inst/extdata/extract_examples_error1.R   |only
 exampletestr-0.3.0/exampletestr/inst/extdata/extract_examples_error2.R   |only
 exampletestr-0.3.0/exampletestr/inst/extdata/extract_examples_error3.R   |only
 exampletestr-0.3.0/exampletestr/inst/extdata/test_exemplar.R             |only
 exampletestr-0.3.0/exampletestr/man/TextEval.Rd                          |only
 exampletestr-0.3.0/exampletestr/man/text_eval_error.Rd                   |only
 exampletestr-0.4.0/exampletestr/DESCRIPTION                              |   14 
 exampletestr-0.4.0/exampletestr/MD5                                      |   54 -
 exampletestr-0.4.0/exampletestr/NAMESPACE                                |    5 
 exampletestr-0.4.0/exampletestr/NEWS.md                                  |   11 
 exampletestr-0.4.0/exampletestr/R/exampletestr.R                         |    1 
 exampletestr-0.4.0/exampletestr/R/exemplar.R                             |  302 ++++------
 exampletestr-0.4.0/exampletestr/R/utils.R                                |   80 +-
 exampletestr-0.4.0/exampletestr/README.md                                |  290 +++++----
 exampletestr-0.4.0/exampletestr/inst/doc/exampletestr.R                  |  159 ++---
 exampletestr-0.4.0/exampletestr/inst/doc/exampletestr.Rmd                |  168 +++--
 exampletestr-0.4.0/exampletestr/inst/doc/exampletestr.html               |  296 +++++----
 exampletestr-0.4.0/exampletestr/inst/extdata/exampletestr.R              |    1 
 exampletestr-0.4.0/exampletestr/inst/extdata/exemplar.R                  |  280 ++++-----
 exampletestr-0.4.0/exampletestr/inst/extdata/extract_examples_rd.Rd      |only
 exampletestr-0.4.0/exampletestr/inst/extdata/extract_examples_rd_noex.Rd |only
 exampletestr-0.4.0/exampletestr/inst/extdata/non_documented_fun.R        |only
 exampletestr-0.4.0/exampletestr/inst/extdata/test_exemplar_uncompleted.R |only
 exampletestr-0.4.0/exampletestr/inst/extdata/utils.R                     |   94 +--
 exampletestr-0.4.0/exampletestr/man/construct_expect_equal.Rd            |    2 
 exampletestr-0.4.0/exampletestr/man/extract_examples.Rd                  |   36 -
 exampletestr-0.4.0/exampletestr/man/extract_examples_rd.Rd               |only
 exampletestr-0.4.0/exampletestr/man/extract_expressions.Rd               |    8 
 exampletestr-0.4.0/exampletestr/man/make_test_shell.Rd                   |   29 
 exampletestr-0.4.0/exampletestr/man/make_tests_shells_file.Rd            |   47 -
 exampletestr-0.4.0/exampletestr/man/text_parse_error.Rd                  |only
 exampletestr-0.4.0/exampletestr/tests/testthat/test_exemplar.R           |  170 +++--
 exampletestr-0.4.0/exampletestr/tests/testthat/test_utils.R              |   16 
 exampletestr-0.4.0/exampletestr/vignettes/exampletestr.Rmd               |  168 +++--
 34 files changed, 1224 insertions(+), 1007 deletions(-)

More information about exampletestr at CRAN
Permanent link

Package clarifai updated to version 0.4.2 with previous version 0.4.0 dated 2016-08-28

Title: Access to Clarifai API
Description: Get description of images from Clarifai API. For more information, see <http://clarifai.com>. Clarifai uses a large deep learning cloud to come up with descriptive labels of the things in an image. It also provides how confident it is about each of the labels.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>

Diff between clarifai versions 0.4.0 dated 2016-08-28 and 0.4.2 dated 2017-04-12

 DESCRIPTION                   |   10 +++---
 MD5                           |   66 +++++++++++++++++++++---------------------
 NEWS.md                       |   13 +++++++-
 R/clarifai.R                  |    4 ++
 R/feedback.R                  |   10 ++++--
 R/get_color.R                 |    8 +++--
 R/get_color_urls.R            |   16 +++++-----
 R/get_info.R                  |   10 ++++--
 R/get_langs.R                 |    9 +++--
 R/get_token.R                 |   10 ++++--
 R/get_usage.R                 |    9 +++--
 R/secret_id.R                 |    4 ++
 R/tag_image_urls.R            |   38 ++++++++++++------------
 R/tag_images.R                |   45 ++++++++++++++--------------
 README.md                     |    9 +++--
 build/vignette.rds            |binary
 inst/doc/poligrams.html       |   15 ++++++---
 inst/doc/using_clarifai.html  |   15 ++++++---
 man/clarifai-package.Rd       |    9 ++---
 man/clarifai_GET.Rd           |    1 
 man/clarifai_POST.Rd          |    1 
 man/clarifai_check_auth.Rd    |    1 
 man/clarifai_check_results.Rd |    1 
 man/clarifai_check_token.Rd   |    1 
 man/feedback.Rd               |    5 ++-
 man/get_color.Rd              |    5 ++-
 man/get_color_urls.Rd         |    5 ++-
 man/get_info.Rd               |    5 ++-
 man/get_langs.Rd              |    5 ++-
 man/get_token.Rd              |    4 +-
 man/get_usage.Rd              |    5 ++-
 man/secret_id.Rd              |    1 
 man/tag_image_urls.Rd         |    5 ++-
 man/tag_images.Rd             |    5 ++-
 34 files changed, 212 insertions(+), 138 deletions(-)

More information about clarifai at CRAN
Permanent link

Package checkpoint updated to version 0.4.0 with previous version 0.3.22 dated 2017-04-07

Title: Install Packages from Snapshots on the Checkpoint Server for Reproducibility
Description: The goal of checkpoint is to solve the problem of package reproducibility in R. Specifically, checkpoint allows you to install packages as they existed on CRAN on a specific snapshot date as if you had a CRAN time machine. To achieve reproducibility, the checkpoint() function installs the packages required or called by your project and scripts to a local library exactly as they existed at the specified point in time. Only those packages are available to your project, thereby avoiding any package updates that came later and may have altered your results. In this way, anyone using checkpoint's checkpoint() can ensure the reproducibility of your scripts or projects at any time. To create the snapshot archives, once a day (at midnight UTC) Microsoft refreshes the Austria CRAN mirror on the "Microsoft R Archived Network" server (<https://mran.microsoft.com/>). Immediately after completion of the rsync mirror process, the process takes a snapshot, thus creating the archive. Snapshot archives exist starting from 2014-09-17.
Author: Microsoft Corporation
Maintainer: Andrie de Vries <adevries@microsoft.com>

Diff between checkpoint versions 0.3.22 dated 2017-04-07 and 0.4.0 dated 2017-04-12

 DESCRIPTION                                |   10 -
 MD5                                        |   42 +++---
 R/checkpoint.R                             |   41 ++----
 R/checkpoint_internals.R                   |    8 -
 R/mock-install-packages.R                  |   21 +--
 R/scanRepoPackages.R                       |   10 +
 build/vignette.rds                         |binary
 inst/doc/checkpoint.R                      |   26 +---
 inst/doc/checkpoint.Rmd                    |   33 +++--
 inst/doc/checkpoint.html                   |  181 ++++++++---------------------
 inst/doc/managing-checkpoint-archives.R    |    8 -
 inst/doc/managing-checkpoint-archives.Rmd  |   15 +-
 inst/doc/managing-checkpoint-archives.html |   54 +++++---
 inst/doc/using-checkpoint-with-knitr.R     |    5 
 inst/doc/using-checkpoint-with-knitr.Rmd   |   12 +
 inst/doc/using-checkpoint-with-knitr.html  |   77 ++++++------
 man/checkpoint.Rd                          |    4 
 tests/testthat/test-1-scan.R               |   18 +-
 tests/testthat/test-3-checkpoint.R         |  135 +++++++++++----------
 vignettes/checkpoint.Rmd                   |   33 +++--
 vignettes/managing-checkpoint-archives.Rmd |   15 +-
 vignettes/using-checkpoint-with-knitr.Rmd  |   12 +
 22 files changed, 360 insertions(+), 400 deletions(-)

More information about checkpoint at CRAN
Permanent link

Package BETS updated to version 0.2.0 with previous version 0.1.0 dated 2017-03-29

Title: Brazilian Economic Time Series
Description: It provides access to and information about the most important Brazilian economic time series - from the Getulio Vargas Foundation, the Central Bank of Brazil and the Brazilian Institute of Geography and Statistics. It also presents tools for managing, analysing (e.g. generating dynamic reports with a complete analysis of a series) and exporting these time series.
Author: Pedro Costa Ferreira [aut, cre], Talitha Speranza [aut], Jonatha Azevedo [aut]
Maintainer: Pedro Costa Ferreira <pedro.guilherme@fgv.br>

Diff between BETS versions 0.1.0 dated 2017-03-29 and 0.2.0 dated 2017-04-12

 BETS-0.1.0/BETS/R/chart.add_basic.R             |only
 BETS-0.1.0/BETS/R/chart.add_extra.R             |only
 BETS-0.1.0/BETS/R/chart.add_notes.R             |only
 BETS-0.1.0/BETS/R/draw.cdb.R                    |only
 BETS-0.1.0/BETS/R/draw.eap.R                    |only
 BETS-0.1.0/BETS/R/draw.indprod.R                |only
 BETS-0.1.0/BETS/R/draw.ipca.R                   |only
 BETS-0.1.0/BETS/R/draw.selic.R                  |only
 BETS-0.1.0/BETS/R/draw.ulc.R                    |only
 BETS-0.1.0/BETS/R/draw.unemp.R                  |only
 BETS-0.1.0/BETS/R/draw.vargdp.R                 |only
 BETS-0.1.0/BETS/inst/inflation_dashboard.Rmd    |only
 BETS-0.1.0/BETS/inst/inflation_dashboard.pdf    |only
 BETS-0.1.0/BETS/inst/logo_bets.png              |only
 BETS-0.1.0/BETS/inst/logo_fgv.png               |only
 BETS-0.1.0/BETS/inst/logo_ibre.png              |only
 BETS-0.1.0/BETS/inst/target_selic.csv           |only
 BETS-0.1.0/BETS/inst/text.txt                   |only
 BETS-0.1.0/BETS/man/chart.add_basic.Rd          |only
 BETS-0.1.0/BETS/man/chart.add_extra.Rd          |only
 BETS-0.1.0/BETS/man/chart.add_notes.Rd          |only
 BETS-0.1.0/BETS/man/draw.cdb.Rd                 |only
 BETS-0.1.0/BETS/man/draw.eap.Rd                 |only
 BETS-0.1.0/BETS/man/draw.indprod.Rd             |only
 BETS-0.1.0/BETS/man/draw.ipca.Rd                |only
 BETS-0.1.0/BETS/man/draw.selic.Rd               |only
 BETS-0.1.0/BETS/man/draw.ulc.Rd                 |only
 BETS-0.1.0/BETS/man/draw.unemp.Rd               |only
 BETS-0.1.0/BETS/man/draw.vargdp.Rd              |only
 BETS-0.2.0/BETS/DESCRIPTION                     |   25 +
 BETS-0.2.0/BETS/MD5                             |  152 ++++++-----
 BETS-0.2.0/BETS/NAMESPACE                       |   27 +-
 BETS-0.2.0/BETS/R/BETS.addin_en.R               |   12 
 BETS-0.2.0/BETS/R/BETS.addin_pt.R               |   30 +-
 BETS-0.2.0/BETS/R/BETS.chart.R                  |  165 ++++++------
 BETS-0.2.0/BETS/R/BETS.corrgram.R               |    3 
 BETS-0.2.0/BETS/R/BETS.dashboard.R              |   36 --
 BETS-0.2.0/BETS/R/BETS.deflate.R                |   81 +++---
 BETS-0.2.0/BETS/R/BETS.get.R                    |  134 +++++-----
 BETS-0.2.0/BETS/R/BETS.report.R                 |   63 ++++
 BETS-0.2.0/BETS/R/BETS.save.R                   |   20 +
 BETS-0.2.0/BETS/R/BETS.search.R                 |  310 ++++++++++++------------
 BETS-0.2.0/BETS/R/draw.animal_spirits.R         |only
 BETS-0.2.0/BETS/R/draw.cap_utl.R                |only
 BETS-0.2.0/BETS/R/draw.conf_lvl.R               |only
 BETS-0.2.0/BETS/R/draw.ei_comps.R               |only
 BETS-0.2.0/BETS/R/draw.ei_vars.R                |only
 BETS-0.2.0/BETS/R/draw.gdp_comps.R              |only
 BETS-0.2.0/BETS/R/draw.gdp_unemp.R              |only
 BETS-0.2.0/BETS/R/draw.gdp_vars.R               |only
 BETS-0.2.0/BETS/R/draw.iie_br.R                 |only
 BETS-0.2.0/BETS/R/draw.lab_mrkt.R               |only
 BETS-0.2.0/BETS/R/draw.misery_index.R           |only
 BETS-0.2.0/BETS/R/draw.survey.R                 |only
 BETS-0.2.0/BETS/R/msg.R                         |    3 
 BETS-0.2.0/BETS/inst/analysis_GRNN.Rmd          |    1 
 BETS-0.2.0/BETS/inst/analysis_HOLT-WINTERS.Rmd  |    3 
 BETS-0.2.0/BETS/inst/analysis_SARIMA.Rmd        |    5 
 BETS-0.2.0/BETS/inst/cei.csv                    |only
 BETS-0.2.0/BETS/inst/ei_vars.csv                |only
 BETS-0.2.0/BETS/inst/fecomercio.csv             |only
 BETS-0.2.0/BETS/inst/fix_figs.tex               |    2 
 BETS-0.2.0/BETS/inst/incerteza_fgv.csv          |only
 BETS-0.2.0/BETS/inst/lei.csv                    |only
 BETS-0.2.0/BETS/inst/logo_sentiment.png         |only
 BETS-0.2.0/BETS/inst/pib_comps.csv              |only
 BETS-0.2.0/BETS/inst/pib_vars.csv               |only
 BETS-0.2.0/BETS/inst/rstudio/addins.dcf         |   22 -
 BETS-0.2.0/BETS/inst/sentiment_dashboard.Rmd    |only
 BETS-0.2.0/BETS/inst/sondagem_fgv.csv           |only
 BETS-0.2.0/BETS/inst/sondagens_completo_fgv.csv |only
 BETS-0.2.0/BETS/man/BETS.Rd                     |    1 
 BETS-0.2.0/BETS/man/BETS.addin_en.Rd            |    1 
 BETS-0.2.0/BETS/man/BETS.addin_pt.Rd            |    1 
 BETS-0.2.0/BETS/man/BETS.chart.Rd               |   67 +++--
 BETS-0.2.0/BETS/man/BETS.corrgram.Rd            |    1 
 BETS-0.2.0/BETS/man/BETS.dashboard.Rd           |   23 -
 BETS-0.2.0/BETS/man/BETS.deflate.Rd             |    1 
 BETS-0.2.0/BETS/man/BETS.dummy.Rd               |    1 
 BETS-0.2.0/BETS/man/BETS.get.Rd                 |    8 
 BETS-0.2.0/BETS/man/BETS.grnn.test.Rd           |    1 
 BETS-0.2.0/BETS/man/BETS.grnn.train.Rd          |    1 
 BETS-0.2.0/BETS/man/BETS.normalize.Rd           |    1 
 BETS-0.2.0/BETS/man/BETS.predict.Rd             |    1 
 BETS-0.2.0/BETS/man/BETS.report.Rd              |   61 ++++
 BETS-0.2.0/BETS/man/BETS.save.Rd                |    1 
 BETS-0.2.0/BETS/man/BETS.save.sas.Rd            |    1 
 BETS-0.2.0/BETS/man/BETS.save.spss.Rd           |    1 
 BETS-0.2.0/BETS/man/BETS.save.stata.Rd          |    1 
 BETS-0.2.0/BETS/man/BETS.search.Rd              |   10 
 BETS-0.2.0/BETS/man/BETS.std_resid.Rd           |    1 
 BETS-0.2.0/BETS/man/BETS.t_test.Rd              |    1 
 BETS-0.2.0/BETS/man/BETS.ur_test.Rd             |    1 
 BETS-0.2.0/BETS/man/check.series.Rd             |    1 
 BETS-0.2.0/BETS/man/draw.animal_spirits.Rd      |only
 BETS-0.2.0/BETS/man/draw.cap_utl.Rd             |only
 BETS-0.2.0/BETS/man/draw.conf_lvl.Rd            |only
 BETS-0.2.0/BETS/man/draw.ei_comps.Rd            |only
 BETS-0.2.0/BETS/man/draw.ei_vars.Rd             |only
 BETS-0.2.0/BETS/man/draw.gdp_comps.Rd           |only
 BETS-0.2.0/BETS/man/draw.gdp_unemp.Rd           |only
 BETS-0.2.0/BETS/man/draw.gdp_vars.Rd            |only
 BETS-0.2.0/BETS/man/draw.iie_br.Rd              |only
 BETS-0.2.0/BETS/man/draw.lab_mrkt.Rd            |only
 BETS-0.2.0/BETS/man/draw.misery_index.Rd        |only
 BETS-0.2.0/BETS/man/draw.survey.Rd              |only
 BETS-0.2.0/BETS/man/get.data.frame.Rd           |    1 
 BETS-0.2.0/BETS/man/get.series.bacen.Rd         |    1 
 BETS-0.2.0/BETS/man/msg.Rd                      |    1 
 109 files changed, 718 insertions(+), 566 deletions(-)

More information about BETS at CRAN
Permanent link

Package ANOM updated to version 0.5 with previous version 0.4.3 dated 2016-02-15

Title: Analysis of Means
Description: Analysis of means (ANOM) as used in technometrical computing. The package takes results from multiple comparisons with the grand mean (obtained with 'multcomp', 'SimComp', 'nparcomp', or 'MCPAN') or corresponding simultaneous confidence intervals as input and produces ANOM decision charts that illustrate which group means deviate significantly from the grand mean.
Author: Philip Pallmann
Maintainer: Philip Pallmann <p.pallmann@lancaster.ac.uk>

Diff between ANOM versions 0.4.3 dated 2016-02-15 and 0.5 dated 2017-04-12

 DESCRIPTION       |    8 ++--
 MD5               |   18 ++++-----
 R/ANOM.R          |  103 ++++++++++++++++++++++++++++++++++++------------------
 R/ANOMgen.R       |   89 +++++++++++++++++++++++++++-------------------
 R/ANOMintern.R    |   89 +++++++++++++++++++++++++++-------------------
 inst/CITATION     |    5 ++
 inst/NEWS         |    7 +++
 inst/doc/ANOM.pdf |binary
 man/ANOM.Rd       |   16 ++++++--
 man/ANOMgen.Rd    |   14 ++++++-
 10 files changed, 225 insertions(+), 124 deletions(-)

More information about ANOM at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.