Title: Spatial Modeling on Stream Networks
Description: Spatial statistical modeling and prediction for data on stream networks, including models based on in-stream distance. Models are created using moving average constructions. Spatial linear models, including explanatory variables, can be fit with (restricted) maximum likelihood. Mapping and other graphical functions are included.
Author: Jay Ver Hoef and Erin Peterson
Maintainer: Jay Ver Hoef <ver.hoef@SpatialStreamNetworks.com>
Diff between SSN versions 1.1.9 dated 2017-03-25 and 1.1.10 dated 2017-04-12
DESCRIPTION | 14 - MD5 | 12 - R/importPredpts.R | 152 ++++++++++----------- R/importSSN.R | 382 ++++++++++++++++++++++++++--------------------------- data/mf04.rda |binary data/mf04p.rda |binary data/modelFits.rda |binary 7 files changed, 280 insertions(+), 280 deletions(-)
Title: S3 Infrastructure for Regular and Irregular Time Series (Z's
Ordered Observations)
Description: An S3 class with methods for totally ordered indexed
observations. It is particularly aimed at irregular time series
of numeric vectors/matrices and factors. zoo's key design goals
are independence of a particular index/date/time class and
consistency with ts and base R by providing methods to extend
standard generics.
Author: Achim Zeileis [aut, cre],
Gabor Grothendieck [aut],
Jeffrey A. Ryan [aut],
Joshua M. Ulrich [ctb],
Felix Andrews [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between zoo versions 1.7-14 dated 2016-12-16 and 1.8-0 dated 2017-04-12
DESCRIPTION | 10 +++-- MD5 | 60 +++++++++++++++++---------------- NAMESPACE | 1 NEWS | 21 +++++++++++ R/as.zoo.R | 2 - R/na.approx.R | 3 + R/na.locf.R | 46 +++++++++++++++---------- R/read.zoo.R | 4 +- R/rollmean.R | 18 ++++++---- R/yearqtr.R | 45 +++++++++++++------------ R/zoo.R | 12 +++++- R/zooreg.R | 10 ++++- build/vignette.rds |binary inst/doc/zoo-design.pdf |binary inst/doc/zoo-faq.pdf |binary inst/doc/zoo-quickref.pdf |binary inst/doc/zoo-read.pdf |binary inst/doc/zoo.Rnw | 72 ++++++++++++++++++++++------------------ inst/doc/zoo.pdf |binary man/as.zoo.Rd | 4 +- man/na.locf.Rd | 37 +++++++++++--------- man/zoo.Rd | 6 ++- man/zooreg.Rd | 5 ++ src/coredata.c | 3 + src/lag.c | 8 ++-- tests/Examples/zoo-Ex.Rout.save | 29 ++++++++-------- tests/na.locf.R |only tests/na.locf.Rout.save |only tests/vignette-zoo.Rout.save | 18 +++++----- vignettes/zoo-refcard-raw.tex | 2 - vignettes/zoo.Rnw | 72 ++++++++++++++++++++++------------------ vignettes/zoo.bib | 22 ++++++++++-- 32 files changed, 308 insertions(+), 202 deletions(-)
More information about SeerMapperWest at CRAN
Permanent link
Title: Univariate and Multivariate Spatial-Temporal Modeling
Description: Fits univariate and multivariate spatio-temporal
random effects models for point-referenced data using Markov chain Monte Carlo (MCMC). Details are given in Finley, Banerjee, and Gelfand (2015; <doi:10.18637/jss.v063.i13>) and Finley, Banerjee, and Cook (2014; <doi:10.1111/2041-210X.12189>).
Author: Andrew O. Finley <finleya@msu.edu>, Sudipto Banerjee
<sudiptob@biostat.umn.edu>
Maintainer: Andrew Finley <finleya@msu.edu>
Diff between spBayes versions 0.3-9 dated 2015-01-27 and 0.4-0 dated 2017-04-12
DESCRIPTION | 16 ++++++++-------- MD5 | 10 ++++++---- NAMESPACE | 10 +++++++++- inst/ChangeLog | 7 ++++++- man/spPredict.Rd | 4 ++-- src/init.cpp |only src/spBayes.h |only 7 files changed, 31 insertions(+), 16 deletions(-)
Title: Pacific Decadal Oscillation Index Data
Description: Monthly Pacific Decadal Oscillation (PDO) index
values from January 1900 to February 2017.
Includes download_pdo() to scrape the latest values from
<http://research.jisao.washington.edu/pdo/PDO.latest>.
Author: Joe Thorley [aut, cre],
Nathan Mantua [aut, dtc],
Steven R. Hare [aut, dtc]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between rpdo versions 0.2.1 dated 2017-01-01 and 0.2.2 dated 2017-04-12
DESCRIPTION | 16 ++++++++-------- MD5 | 13 +++++++------ NEWS.md | 6 +++++- README.md | 46 +++++++++++++++++++++++++++------------------- data/pdo.rda |binary man/download_pdo.Rd | 1 - man/pdo.Rd | 1 - tools |only 8 files changed, 47 insertions(+), 36 deletions(-)
Title: Interface to the 'Biodiversity' 'Heritage' Library
Description: Interface to 'Biodiversity' 'Heritage' Library ('BHL')
(<http://www.biodiversitylibrary.org/>) 'API'
(<http://www.biodiversitylibrary.org/api2/docs/docs.html>). 'BHL' is a
repository of 'digitized' literature on 'biodiversity'
studies, including 'floras', research papers, and more.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rbhl versions 0.3.0 dated 2016-12-22 and 0.8.0 dated 2017-04-12
rbhl-0.3.0/rbhl/R/bhl_getpartendnote.R |only rbhl-0.3.0/rbhl/R/bhl_gettitleendnote.R |only rbhl-0.3.0/rbhl/man/bhl_getpartendnote.Rd |only rbhl-0.3.0/rbhl/man/bhl_gettitleendNote.Rd |only rbhl-0.8.0/rbhl/DESCRIPTION | 18 - rbhl-0.8.0/rbhl/LICENSE | 2 rbhl-0.8.0/rbhl/MD5 | 177 +++++----- rbhl-0.8.0/rbhl/NAMESPACE | 7 rbhl-0.8.0/rbhl/NEWS.md |only rbhl-0.8.0/rbhl/R/bhl_authorsearch.R | 3 rbhl-0.8.0/rbhl/R/bhl_bioherlib.R | 34 + rbhl-0.8.0/rbhl/R/bhl_booksearch.R | 17 rbhl-0.8.0/rbhl/R/bhl_getauthorparts.R | 4 rbhl-0.8.0/rbhl/R/bhl_getauthortitles.R | 4 rbhl-0.8.0/rbhl/R/bhl_getcollections.R | 18 - rbhl-0.8.0/rbhl/R/bhl_getitembyidentifier.R | 15 rbhl-0.8.0/rbhl/R/bhl_getitemmetadata.R | 25 - rbhl-0.8.0/rbhl/R/bhl_getitempages.R | 10 rbhl-0.8.0/rbhl/R/bhl_getitemparts.R | 4 rbhl-0.8.0/rbhl/R/bhl_getlanguages.R | 6 rbhl-0.8.0/rbhl/R/bhl_getpagemetadata.R | 14 rbhl-0.8.0/rbhl/R/bhl_getpagenames.R | 7 rbhl-0.8.0/rbhl/R/bhl_getpartbibtex.R | 3 rbhl-0.8.0/rbhl/R/bhl_getpartbyidentifier.R | 12 rbhl-0.8.0/rbhl/R/bhl_getpartmetadata.R | 8 rbhl-0.8.0/rbhl/R/bhl_getpartnames.R | 7 rbhl-0.8.0/rbhl/R/bhl_getsubjectparts.R | 8 rbhl-0.8.0/rbhl/R/bhl_gettitlebyidentifier.R | 15 rbhl-0.8.0/rbhl/R/bhl_gettitlemetadata.R | 8 rbhl-0.8.0/rbhl/R/bhl_getunpublisheditems.R | 6 rbhl-0.8.0/rbhl/R/bhl_getunpublishedparts.R | 10 rbhl-0.8.0/rbhl/R/bhl_getunpublishedtitles.R | 7 rbhl-0.8.0/rbhl/R/bhl_namecount.R | 6 rbhl-0.8.0/rbhl/R/bhl_namegetdetail.R | 11 rbhl-0.8.0/rbhl/R/bhl_namelist.R | 22 - rbhl-0.8.0/rbhl/R/bhl_namesearch.R | 3 rbhl-0.8.0/rbhl/R/bhl_openurl.R | 23 - rbhl-0.8.0/rbhl/R/bhl_partsearch.R | 28 - rbhl-0.8.0/rbhl/R/bhl_subjectsearch.R | 7 rbhl-0.8.0/rbhl/R/bhl_titlesearchsimple.R | 6 rbhl-0.8.0/rbhl/R/getpages.R | 8 rbhl-0.8.0/rbhl/R/rbhl-package.R | 19 - rbhl-0.8.0/rbhl/R/zzz.R | 20 - rbhl-0.8.0/rbhl/README.md | 7 rbhl-0.8.0/rbhl/build/vignette.rds |binary rbhl-0.8.0/rbhl/inst/vign/rbhl_vignette.md | 4 rbhl-0.8.0/rbhl/man/bhl_authorsearch.Rd | 18 - rbhl-0.8.0/rbhl/man/bhl_bioherlib.Rd | 28 - rbhl-0.8.0/rbhl/man/bhl_booksearch.Rd | 32 - rbhl-0.8.0/rbhl/man/bhl_getauthorparts.Rd | 14 rbhl-0.8.0/rbhl/man/bhl_getauthortitles.Rd | 18 - rbhl-0.8.0/rbhl/man/bhl_getcollections.Rd | 14 rbhl-0.8.0/rbhl/man/bhl_getinstitutions.Rd | 14 rbhl-0.8.0/rbhl/man/bhl_getitembyidentifier.Rd | 25 - rbhl-0.8.0/rbhl/man/bhl_getitemmetadata.Rd | 24 - rbhl-0.8.0/rbhl/man/bhl_getitempages.Rd | 16 rbhl-0.8.0/rbhl/man/bhl_getitemparts.Rd | 14 rbhl-0.8.0/rbhl/man/bhl_getlanguages.Rd | 14 rbhl-0.8.0/rbhl/man/bhl_getpagemetadata.Rd | 18 - rbhl-0.8.0/rbhl/man/bhl_getpagenames.Rd | 14 rbhl-0.8.0/rbhl/man/bhl_getpageocrtext.Rd | 14 rbhl-0.8.0/rbhl/man/bhl_getpartbibtex.Rd | 17 rbhl-0.8.0/rbhl/man/bhl_getpartbyidentifier.Rd | 17 rbhl-0.8.0/rbhl/man/bhl_getpartmetadata.Rd | 9 rbhl-0.8.0/rbhl/man/bhl_getpartnames.Rd | 17 rbhl-0.8.0/rbhl/man/bhl_getsubjectparts.Rd | 14 rbhl-0.8.0/rbhl/man/bhl_getsubjecttitles.Rd | 14 rbhl-0.8.0/rbhl/man/bhl_gettitlebibTex.Rd | 14 rbhl-0.8.0/rbhl/man/bhl_gettitlebyidentifier.Rd | 23 - rbhl-0.8.0/rbhl/man/bhl_gettitleitems.Rd | 14 rbhl-0.8.0/rbhl/man/bhl_gettitlemetadata.Rd | 14 rbhl-0.8.0/rbhl/man/bhl_getunpublisheditems.Rd | 14 rbhl-0.8.0/rbhl/man/bhl_getunpublishedparts.Rd | 20 - rbhl-0.8.0/rbhl/man/bhl_getunpublishedtitles.Rd | 14 rbhl-0.8.0/rbhl/man/bhl_namecount.Rd | 18 - rbhl-0.8.0/rbhl/man/bhl_namegetdetail.Rd | 25 - rbhl-0.8.0/rbhl/man/bhl_namelist.Rd | 31 - rbhl-0.8.0/rbhl/man/bhl_namesearch.Rd | 14 rbhl-0.8.0/rbhl/man/bhl_openurl.Rd | 17 rbhl-0.8.0/rbhl/man/bhl_partsearch.Rd | 28 - rbhl-0.8.0/rbhl/man/bhl_subjectsearch.Rd | 18 - rbhl-0.8.0/rbhl/man/bhl_titlesearchsimple.Rd | 18 - rbhl-0.8.0/rbhl/man/getpages.Rd | 3 rbhl-0.8.0/rbhl/man/rbhl-defunct.Rd |only rbhl-0.8.0/rbhl/man/rbhl-package.Rd | 7 rbhl-0.8.0/rbhl/man/rbhlmethods.Rd | 1 rbhl-0.8.0/rbhl/tests/testthat/test-bhl_gettitleitems.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_gettitlemetadata.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_getunpublisheditems.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_getunpublishedparts.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_getunpublishedtitles.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_namecount.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_namelist.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_namesearch.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_openurl.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_partsearch.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_subjectsearch.R |only rbhl-0.8.0/rbhl/tests/testthat/test-bhl_titlesearchsimple.R |only rbhl-0.8.0/rbhl/tests/testthat/test-getpages.R |only 99 files changed, 671 insertions(+), 600 deletions(-)
Title: Objective Bayesian Model Discrimination in Follow-Up Designs
Description: Implements the objective Bayesian methodology proposed in Consonni and Deldossi in order to choose the optimal experiment that better discriminate between competing models. G.Consonni, L. Deldossi (2014) Objective Bayesian Model Discrimination in Follow-up Experimental Designs, Test. <DOI:10.1007/s11749-015-0461-3>.
Author: Laura Deldossi and Marta Nai Ruscone based on Daniel Meyer's code (2016)
Maintainer: Marta Nai Ruscone <mnairuscone@liuc.it>
Diff between OBsMD versions 0.1-0.4 dated 2015-09-16 and 0.2-0.00 dated 2017-04-12
DESCRIPTION | 21 - MD5 | 9 NAMESPACE | 15 man/OBsMD-package.Rd | 8 src/init.c |only src/obsmd.f | 983 +++++++++++++++++++++++++++------------------------ 6 files changed, 565 insertions(+), 471 deletions(-)
Title: Log-Gaussian Cox Process
Description: Spatial and spatio-temporal modelling of point patterns using the
log-Gaussian Cox process. Bayesian inference for spatial, spatiotemporal,
multivariate and aggregated point processes using Markov chain Monte Carlo.
Author: Benjamin M. Taylor, Tilman M. Davies, Barry S. Rowlingson, Peter J.
Diggle. Additional code contributions from Edzer Pebesma.
Maintainer: Benjamin M. Taylor <b.taylor1@lancaster.ac.uk>
Diff between lgcp versions 1.3-15 dated 2016-07-18 and 1.4 dated 2017-04-12
DESCRIPTION | 17 MD5 | 782 +++++++-------- NAMESPACE | 4 R/AggregateSpatialOnlyPlusParameters.R | 522 +++++----- R/geometryHandling.R | 192 +-- R/lgcp.R | 5 R/lgcpSimSpatioTemporal.R | 111 +- R/lgcpStructures.R | 733 +++++++------- build/vignette.rds |binary data/wpopdata.rda |binary data/wtowncoords.rda |binary data/wtowns.rda |binary inst/doc/lgcp.pdf |binary man/BetaParameters.Rd | 1 man/C.diff.single.im.Rd | 1 man/CovFunction.Rd | 3 man/CovFunction.function.Rd | 1 man/CovParameters.Rd | 1 man/Cvb.Rd | 1 man/EvaluatePrior.Rd | 1 man/Extract.mstppp.Rd | 3 man/Extract.stppp.Rd | 3 man/GAfinalise.MonteCarloAverage.Rd | 1 man/GAfinalise.Rd | 1 man/GAfinalise.nullAverage.Rd | 1 man/GAinitialise.MonteCarloAverage.Rd | 1 man/GAinitialise.Rd | 1 man/GAinitialise.nullAverage.Rd | 1 man/GAreturnvalue.MonteCarloAverage.Rd | 1 man/GAreturnvalue.Rd | 1 man/GAreturnvalue.nullAverage.Rd | 1 man/GAupdate.MonteCarloAverage.Rd | 1 man/GAupdate.Rd | 1 man/GAupdate.nullAverage.Rd | 1 man/GFfinalise.Rd | 1 man/GFfinalise.dump2dir.Rd | 1 man/GFfinalise.nullFunction.Rd | 1 man/GFinitialise.Rd | 1 man/GFinitialise.dump2dir.Rd | 1 man/GFinitialise.nullFunction.Rd | 1 man/GFreturnvalue.Rd | 1 man/GFreturnvalue.dump2dir.Rd | 1 man/GFreturnvalue.nullFunction.Rd | 1 man/GFupdate.Rd | 1 man/GFupdate.dump2dir.Rd | 1 man/GFupdate.nullFunction.Rd | 1 man/GPdrv.Rd | 1 man/GPdrv2.Rd | 1 man/GPdrv2_Multitype.Rd | 1 man/GPlist2array.Rd | 1 man/GPrealisation.Rd | 1 man/GammafromY.Rd | 1 man/GaussianPrior.Rd | 1 man/K.diff.single.Rd | 1 man/K.u.Rd | 1 man/K.val.Rd | 1 man/KinhomAverage.Rd | 1 man/LogGaussianPrior.Rd | 1 man/MALAlgcp.Rd | 1 man/MALAlgcpAggregateSpatial.PlusPars.Rd | 1 man/MALAlgcpMultitypeSpatial.PlusPars.Rd | 1 man/MALAlgcpSpatial.PlusPars.Rd | 1 man/MALAlgcpSpatial.Rd | 1 man/MALAlgcpSpatioTemporal.PlusPars.Rd | 1 man/MonteCarloAverage.Rd | 1 man/PriorSpec.Rd | 1 man/PriorSpec.list.Rd | 1 man/RandomFieldsCovFct.Rd | 1 man/SpatialPolygonsDataFrame.stapp.Rd | 1 man/SpikedExponentialCovFct.Rd | 1 man/YfromGamma.Rd | 1 man/add.list.Rd | 1 man/addTemporalCovariates.Rd | 7 man/affine.SpatialPolygonsDataFrame.Rd | 1 man/affine.fromFunction.Rd | 1 man/affine.fromSPDF.Rd | 1 man/affine.fromXYZ.Rd | 1 man/affine.stppp.Rd | 1 man/aggCovInfo.ArealWeightedMean.Rd | 1 man/aggCovInfo.ArealWeightedSum.Rd | 1 man/aggCovInfo.Majority.Rd | 1 man/aggCovInfo.Rd | 1 man/aggregateCovariateInfo.Rd | 1 man/aggregateformulaList.Rd | 1 man/andrieuthomsh.Rd | 1 man/as.SpatialGridDataFrame.Rd | 1 man/as.SpatialGridDataFrame.fromXYZ.Rd | 1 man/as.SpatialPixelsDataFrame.Rd | 1 man/as.SpatialPixelsDataFrame.lgcpgrid.Rd | 1 man/as.array.lgcpgrid.Rd | 1 man/as.fromXYZ.Rd | 1 man/as.fromXYZ.fromFunction.Rd | 1 man/as.im.fromFunction.Rd | 1 man/as.im.fromSPDF.Rd | 1 man/as.im.fromXYZ.Rd | 1 man/as.list.lgcpgrid.Rd | 1 man/as.owin.stapp.Rd | 1 man/as.owinlist.Rd | 1 man/as.owinlist.SpatialPolygonsDataFrame.Rd | 1 man/as.owinlist.stapp.Rd | 1 man/as.ppp.mstppp.Rd | 1 man/as.ppp.stppp.Rd | 1 man/as.stppp.Rd | 1 man/as.stppp.stapp.Rd | 1 man/assigninterp.Rd | 15 man/at.Rd | 1 man/autocorr.Rd | 1 man/autocorrMultitype.Rd | 1 man/betavals.Rd | 1 man/blockcircbase.Rd | 1 man/blockcircbaseFunction.Rd | 5 man/bt.scalar.Rd | 1 man/checkObsWin.Rd | 1 man/chooseCellwidth.Rd | 7 man/circulant.Rd | 1 man/circulant.matrix.Rd | 1 man/circulant.numeric.Rd | 1 man/clearinterp.Rd | 1 man/computeGradtruncSpatial.Rd | 1 man/computeGradtruncSpatioTemporal.Rd | 1 man/condProbs.Rd | 3 man/constantInTime.Rd | 1 man/constantInTime.numeric.Rd | 1 man/constantInTime.stppp.Rd | 1 man/constanth.Rd | 1 man/cov.interp.fft.Rd | 1 man/covEffects.Rd | 1 man/d.func.Rd | 1 man/density.stppp.Rd | 1 man/discreteWindow.Rd | 1 man/discreteWindow.lgcpPredict.Rd | 1 man/dump2dir.Rd | 1 man/eigenfrombase.Rd | 1 man/etavals.Rd | 1 man/exceedProbs.Rd | 1 man/exceedProbsAggregated.Rd | 1 man/expectation.Rd | 1 man/expectation.lgcpPredict.Rd | 1 man/expectation.lgcpPredictSpatialOnlyPlusParameters.Rd | 1 man/exponentialCovFct.Rd | 1 man/extendspatialAtRisk.Rd | 1 man/extract.Rd | 1 man/extract.lgcpPredict.Rd | 1 man/fftgrid.Rd | 1 man/fftinterpolate.Rd | 1 man/fftinterpolate.fromFunction.Rd | 1 man/fftinterpolate.fromSPDF.Rd | 1 man/fftinterpolate.fromXYZ.Rd | 1 man/fftmultiply.Rd | 1 man/formulaList.Rd | 1 man/g.diff.single.Rd | 1 man/gOverlay.Rd | 1 man/genFFTgrid.Rd | 1 man/getCellCounts.Rd | 1 man/getCounts.Rd | 1 man/getCovParameters.GPrealisation.Rd | 1 man/getCovParameters.Rd | 1 man/getCovParameters.list.Rd | 1 man/getLHSformulaList.Rd | 1 man/getRotation.Rd | 1 man/getRotation.default.Rd | 1 man/getRotation.stppp.Rd | 1 man/getZmat.Rd | 3 man/getZmats.Rd | 1 man/getinterp.Rd | 13 man/getlgcpPredictSpatialINLA.Rd | 1 man/getpolyol.Rd | 3 man/getup.Rd | 1 man/ginhomAverage.Rd | 1 man/grid2spdf.Rd | 1 man/grid2spix.Rd | 1 man/grid2spoly.Rd | 1 man/grid2spts.Rd | 1 man/gridInWindow.Rd | 1 man/gridav.Rd | 1 man/gridav.lgcpPredict.Rd | 1 man/gridfun.Rd | 1 man/gridfun.lgcpPredict.Rd | 1 man/gu.Rd | 1 man/guessinterp.Rd | 17 man/hasNext.Rd | 1 man/hasNext.iter.Rd | 1 man/hvals.Rd | 1 man/hvals.lgcpPredict.Rd | 1 man/identify.lgcpPredict.Rd | 1 man/identifygrid.Rd | 1 man/image.lgcpgrid.Rd | 1 man/initialiseAMCMC.Rd | 1 man/initialiseAMCMC.andrieuthomsh.Rd | 1 man/initialiseAMCMC.constanth.Rd | 1 man/integerise.Rd | 1 man/integerise.mstppp.Rd | 1 man/integerise.stppp.Rd | 1 man/intens.Rd | 1 man/intens.lgcpPredict.Rd | 1 man/intens.lgcpSimMultitypeSpatialPlusParameters.Rd | 1 man/intens.lgcpSimSpatialPlusParameters.Rd | 1 man/interptypes.Rd | 13 man/inversebase.Rd | 1 man/is.SPD.Rd | 1 man/is.burnin.Rd | 1 man/is.pow2.Rd | 1 man/is.retain.Rd | 1 man/iteration.Rd | 1 man/lambdaEst.Rd | 1 man/lambdaEst.ppp.Rd | 1 man/lambdaEst.stppp.Rd | 1 man/lgcp-package.Rd | 3 man/lgcpForecast.Rd | 1 man/lgcpInits.Rd | 11 man/lgcpPredict.Rd | 1 man/lgcpPredictAggregateSpatialPlusPars.Rd | 43 man/lgcpPredictAggregated.Rd | 1 man/lgcpPredictMultitypeSpatialPlusPars.Rd | 1 man/lgcpPredictSpatial.Rd | 1 man/lgcpPredictSpatialINLA.Rd | 1 man/lgcpPredictSpatialPlusPars.Rd | 1 man/lgcpPredictSpatioTemporalPlusPars.Rd | 1 man/lgcpPrior.Rd | 3 man/lgcpSim.Rd | 17 man/lgcpSimMultitypeSpatialCovariates.Rd | 1 man/lgcpSimSpatial.Rd | 1 man/lgcpSimSpatialCovariates.Rd | 1 man/lgcpbayes.Rd | 1 man/lgcpgrid.Rd | 1 man/lgcpgrid.array.Rd | 1 man/lgcpgrid.list.Rd | 1 man/lgcpgrid.matrix.Rd | 1 man/lgcppars.Rd | 1 man/lgcpvignette.Rd | 1 man/loc2poly.Rd | 1 man/loop.mcmc.Rd | 1 man/ltar.Rd | 3 man/matchcovariance.Rd | 1 man/mcmcLoop.Rd | 1 man/mcmcProgressNone.Rd | 1 man/mcmcProgressPrint.Rd | 1 man/mcmcProgressTextBar.Rd | 1 man/mcmcProgressTk.Rd | 1 man/mcmcpars.Rd | 1 man/mcmctrace.Rd | 1 man/mcmctrace.lgcpPredict.Rd | 1 man/meanfield.Rd | 1 man/meanfield.lgcpPredict.Rd | 1 man/meanfield.lgcpPredictINLA.Rd | 1 man/minimum.contrast.Rd | 1 man/minimum.contrast.spatiotemporal.Rd | 1 man/mstppp.Rd | 1 man/mstppp.list.Rd | 1 man/mstppp.ppp.Rd | 1 man/mstppp.stppp.Rd | 1 man/muEst.Rd | 1 man/multiply.list.Rd | 1 man/my.KinhomAverage.Rd | 1 man/my.ginhomAverage.Rd | 1 man/neattable.Rd | 1 man/neigh2D.Rd | 1 man/nextStep.Rd | 1 man/nullAverage.Rd | 1 man/nullFunction.Rd | 1 man/numCases.Rd | 1 man/osppp2latlon.Rd | 1 man/osppp2merc.Rd | 1 man/paramprec.Rd | 1 man/paramprecbase.Rd | 1 man/parautocorr.Rd | 1 man/parsummary.Rd | 1 man/plot.fromSPDF.Rd | 1 man/plot.fromXYZ.Rd | 1 man/plot.lgcpAutocorr.Rd | 1 man/plot.lgcpPredict.Rd | 1 man/plot.lgcpQuantiles.Rd | 1 man/plot.lgcpZmat.Rd | 1 man/plot.lgcpgrid.Rd | 1 man/plot.mcmcdiag.Rd | 1 man/plot.mstppp.Rd | 1 man/plot.stppp.Rd | 1 man/plot.temporalAtRisk.Rd | 1 man/plotExceed.Rd | 1 man/plotExceed.array.Rd | 1 man/plotExceed.lgcpPredict.Rd | 1 man/plotit.Rd | 1 man/postcov.Rd | 3 man/postcov.lgcpPredictAggregateSpatialPlusParameters.Rd | 1 man/postcov.lgcpPredictMultitypeSpatialPlusParameters.Rd | 1 man/postcov.lgcpPredictSpatialOnlyPlusParameters.Rd | 1 man/postcov.lgcpPredictSpatioTemporalPlusParameters.Rd | 1 man/print.dump2dir.Rd | 1 man/print.fromFunction.Rd | 1 man/print.fromSPDF.Rd | 1 man/print.fromXYZ.Rd | 1 man/print.gridaverage.Rd | 1 man/print.lgcpPredict.Rd | 1 man/print.lgcpgrid.Rd | 1 man/print.mcmc.Rd | 1 man/print.mstppp.Rd | 1 man/print.stapp.Rd | 1 man/print.stppp.Rd | 1 man/print.temporalAtRisk.Rd | 1 man/priorpost.Rd | 1 man/quantile.lgcpPredict.Rd | 1 man/quantile.lgcpgrid.Rd | 1 man/raster.lgcpgrid.Rd | 1 man/rescale.mstppp.Rd | 1 man/rescale.stppp.Rd | 1 man/resetLoop.Rd | 1 man/rgauss.Rd | 1 man/roteffgain.Rd | 1 man/rotmat.Rd | 1 man/rr.Rd | 1 man/rr.lgcpPredict.Rd | 1 man/samplePosterior.Rd | 3 man/segProbs.Rd | 5 man/seintens.Rd | 1 man/seintens.lgcpPredict.Rd | 1 man/selectObsWindow.Rd | 1 man/selectObsWindow.default.Rd | 1 man/selectObsWindow.stppp.Rd | 1 man/serr.Rd | 1 man/serr.lgcpPredict.Rd | 1 man/setTxtProgressBar2.Rd | 1 man/setoutput.Rd | 1 man/showGrid.Rd | 1 man/showGrid.default.Rd | 1 man/showGrid.lgcpPredict.Rd | 1 man/showGrid.stppp.Rd | 1 man/smultiply.list.Rd | 1 man/sparsebase.Rd | 1 man/spatialAtRisk.Rd | 1 man/spatialAtRisk.SpatialGridDataFrame.Rd | 1 man/spatialAtRisk.SpatialPolygonsDataFrame.Rd | 1 man/spatialAtRisk.bivden.Rd | 1 man/spatialAtRisk.default.Rd | 1 man/spatialAtRisk.fromXYZ.Rd | 1 man/spatialAtRisk.function.Rd | 1 man/spatialAtRisk.im.Rd | 1 man/spatialAtRisk.lgcpgrid.Rd | 1 man/spatialIntensities.Rd | 1 man/spatialIntensities.fromSPDF.Rd | 1 man/spatialIntensities.fromXYZ.Rd | 1 man/spatialparsEst.Rd | 1 man/stGPrealisation.Rd | 1 man/stapp.Rd | 1 man/stapp.SpatialPolygonsDataFrame.Rd | 1 man/stapp.list.Rd | 1 man/stppp.Rd | 1 man/stppp.list.Rd | 1 man/stppp.ppp.Rd | 1 man/summary.lgcpgrid.Rd | 1 man/summary.mcmc.Rd | 1 man/target.and.grad.AggregateSpatialPlusPars.Rd | 1 man/target.and.grad.MultitypespatialPlusPars.Rd | 1 man/target.and.grad.SpatioTemporalPlusPars.Rd | 1 man/target.and.grad.spatial.Rd | 1 man/target.and.grad.spatialPlusPars.Rd | 1 man/target.and.grad.spatiotemporal.Rd | 1 man/tempRaster.Rd | 1 man/temporalAtRisk.Rd | 1 man/temporalAtRisk.function.Rd | 1 man/temporalAtRisk.numeric.Rd | 1 man/textsummary.Rd | 1 man/thetaEst.Rd | 1 man/toral.cov.mat.Rd | 1 man/touchingowin.Rd | 1 man/traceplots.Rd | 1 man/transblack.Rd | 1 man/transblue.Rd | 1 man/transgreen.Rd | 1 man/transred.Rd | 1 man/txtProgressBar2.Rd | 1 man/updateAMCMC.Rd | 1 man/updateAMCMC.andrieuthomsh.Rd | 1 man/updateAMCMC.constanth.Rd | 1 man/varfield.Rd | 1 man/varfield.lgcpPredict.Rd | 1 man/varfield.lgcpPredictINLA.Rd | 1 man/window.lgcpPredict.Rd | 1 man/xvals.Rd | 1 man/xvals.SpatialGridDataFrame.Rd | 1 man/xvals.default.Rd | 1 man/xvals.fromXYZ.Rd | 1 man/xvals.lgcpPredict.Rd | 1 man/yvals.Rd | 1 man/yvals.SpatialGridDataFrame.Rd | 1 man/yvals.default.Rd | 1 man/yvals.fromXYZ.Rd | 1 man/yvals.lgcpPredict.Rd | 1 man/zvals.Rd | 1 man/zvals.SpatialGridDataFrame.Rd | 1 man/zvals.default.Rd | 1 man/zvals.fromXYZ.Rd | 1 tests/lgcpMethodsTest.R | 22 392 files changed, 1369 insertions(+), 1561 deletions(-)
Title: Convolution-Based Nonstationary Spatial Modeling
Description: Fits convolution-based nonstationary
Gaussian process models to point-referenced spatial data. The nonstationary
covariance function allows the user to specify the underlying correlation
structure and which spatial dependence parameters should be allowed to
vary over space: the anisotropy, nugget variance, and process variance.
The parameters are estimated via maximum likelihood, using a local
likelihood approach. Also provided are functions to fit stationary spatial
models for comparison, calculate the Kriging predictor and standard errors,
and create various plots to visualize nonstationarity.
Author: Mark D. Risser [aut, cre]
Maintainer: Mark D. Risser <markdrisser@gmail.com>
Diff between convoSPAT versions 1.1.1 dated 2016-10-21 and 1.2 dated 2017-04-12
DESCRIPTION | 8 MD5 | 26 - R/convoSPAT_fitpred.R | 573 ++++++++++++++++++++++++++------------- R/convoSPAT_paramEst.R | 47 +-- R/convoSPAT_summplot.R | 23 + man/Aniso_fit.Rd | 13 man/NSconvo_fit.Rd | 49 ++- man/make_aniso_loglik.Rd | 4 man/make_aniso_loglik_kappa.Rd | 4 man/make_global_loglik1.Rd | 8 man/make_global_loglik1_kappa.Rd | 4 man/make_global_loglik2.Rd | 2 man/make_global_loglik3.Rd | 4 man/make_global_loglik3_kappa.Rd | 4 14 files changed, 526 insertions(+), 243 deletions(-)
Title: A Tidy Data Model for Natural Language Processing
Description: Provides a set of fast tools for converting a textual corpus into a set of normalized tables. Users may make use of a Python back end with 'spaCy' <https://spacy.io> or the Java back end 'CoreNLP' <http://stanfordnlp.github.io/CoreNLP/>. A minimal back end with no external dependencies is also provided. Exposed annotation tasks include tokenization, part of speech tagging, named entity recognition, entity linking, sentiment analysis, dependency parsing, coreference resolution, and word embeddings. Summary statistics regarding token unigram, part of speech tag, and dependency type frequencies are also included to assist with analyses.
Author: Taylor B. Arnold [aut, cre]
Maintainer: Taylor B. Arnold <taylor.arnold@acm.org>
Diff between cleanNLP versions 0.24 dated 2016-11-11 and 1.5.2 dated 2017-04-12
cleanNLP-0.24/cleanNLP/R/engine.R |only cleanNLP-0.24/cleanNLP/java/src/main/java/edu/richmond/nlp/Outputter/CSVSentimentOutputter.java |only cleanNLP-0.24/cleanNLP/java/src/main/java/edu/richmond/nlp/Outputter/CSVTripleOutputter.java |only cleanNLP-0.24/cleanNLP/java/src/main/java/edu/richmond/nlp/Writer/CSVSentimentDocumentWriter.java |only cleanNLP-0.24/cleanNLP/java/src/main/java/edu/richmond/nlp/Writer/CSVTripleDocumentWriter.java |only cleanNLP-0.24/cleanNLP/man/cleanNLP.Rd |only cleanNLP-0.24/cleanNLP/man/combine_annotators.Rd |only cleanNLP-0.24/cleanNLP/man/download_clean_nlp.Rd |only cleanNLP-0.24/cleanNLP/man/get_sentiment.Rd |only cleanNLP-0.24/cleanNLP/man/get_triple.Rd |only cleanNLP-0.24/cleanNLP/man/init_clean_nlp.Rd |only cleanNLP-0.24/cleanNLP/man/set_language.Rd |only cleanNLP-0.24/cleanNLP/man/set_properties.Rd |only cleanNLP-1.5.2/cleanNLP/DESCRIPTION | 28 cleanNLP-1.5.2/cleanNLP/MD5 | 118 +- cleanNLP-1.5.2/cleanNLP/NAMESPACE | 40 cleanNLP-1.5.2/cleanNLP/R/accessors.R | 146 +-- cleanNLP-1.5.2/cleanNLP/R/annotate.R | 460 ++++++++-- cleanNLP-1.5.2/cleanNLP/R/backend_coreNLP.R |only cleanNLP-1.5.2/cleanNLP/R/backend_spaCy.R |only cleanNLP-1.5.2/cleanNLP/R/backend_tokenizers.R |only cleanNLP-1.5.2/cleanNLP/R/download.R | 30 cleanNLP-1.5.2/cleanNLP/R/onLoad.R | 7 cleanNLP-1.5.2/cleanNLP/R/pkg.R | 50 - cleanNLP-1.5.2/cleanNLP/R/tools.R |only cleanNLP-1.5.2/cleanNLP/README.md | 227 ++++ cleanNLP-1.5.2/cleanNLP/build |only cleanNLP-1.5.2/cleanNLP/data/obama.rda |binary cleanNLP-1.5.2/cleanNLP/inst/doc |only cleanNLP-1.5.2/cleanNLP/inst/extdata/cleanNLP-0.1.jar |binary cleanNLP-1.5.2/cleanNLP/inst/py |only cleanNLP-1.5.2/cleanNLP/inst/txt_files |only cleanNLP-1.5.2/cleanNLP/java/src/main/java/edu/richmond/nlp/AnnotationProcessor.java | 9 cleanNLP-1.5.2/cleanNLP/java/src/main/java/edu/richmond/nlp/Outputter/CSVCoreferenceOutputter.java | 3 cleanNLP-1.5.2/cleanNLP/java/src/main/java/edu/richmond/nlp/Outputter/CSVSentenceOutputter.java |only cleanNLP-1.5.2/cleanNLP/java/src/main/java/edu/richmond/nlp/Writer/CSVDependencyDocumentWriter.java | 12 cleanNLP-1.5.2/cleanNLP/java/src/main/java/edu/richmond/nlp/Writer/CSVSentenceDocumentWriter.java |only cleanNLP-1.5.2/cleanNLP/java/src/main/java/edu/richmond/nlp/Writer/CSVTokenDocumentWriter.java | 13 cleanNLP-1.5.2/cleanNLP/man/annotate.Rd | 20 cleanNLP-1.5.2/cleanNLP/man/cleanNLP-package.Rd |only cleanNLP-1.5.2/cleanNLP/man/combine_documents.Rd |only cleanNLP-1.5.2/cleanNLP/man/dep_frequency.Rd | 1 cleanNLP-1.5.2/cleanNLP/man/doc_id_reset.Rd | 1 cleanNLP-1.5.2/cleanNLP/man/download_core_nlp.Rd |only cleanNLP-1.5.2/cleanNLP/man/extract_documents.Rd |only cleanNLP-1.5.2/cleanNLP/man/from_CoNLLU.Rd |only cleanNLP-1.5.2/cleanNLP/man/get_coreference.Rd | 13 cleanNLP-1.5.2/cleanNLP/man/get_dependency.Rd | 14 cleanNLP-1.5.2/cleanNLP/man/get_document.Rd | 7 cleanNLP-1.5.2/cleanNLP/man/get_entity.Rd | 52 - cleanNLP-1.5.2/cleanNLP/man/get_sentence.Rd |only cleanNLP-1.5.2/cleanNLP/man/get_tfidf.Rd |only cleanNLP-1.5.2/cleanNLP/man/get_token.Rd | 12 cleanNLP-1.5.2/cleanNLP/man/get_vector.Rd |only cleanNLP-1.5.2/cleanNLP/man/init_coreNLP.Rd |only cleanNLP-1.5.2/cleanNLP/man/init_spaCy.Rd |only cleanNLP-1.5.2/cleanNLP/man/init_tokenizers.Rd |only cleanNLP-1.5.2/cleanNLP/man/obama.Rd | 1 cleanNLP-1.5.2/cleanNLP/man/pos_frequency.Rd | 1 cleanNLP-1.5.2/cleanNLP/man/print.annotation.Rd | 1 cleanNLP-1.5.2/cleanNLP/man/read_annotation.Rd | 1 cleanNLP-1.5.2/cleanNLP/man/tidy_pca.Rd |only cleanNLP-1.5.2/cleanNLP/man/word_frequency.Rd | 1 cleanNLP-1.5.2/cleanNLP/man/write_annotation.Rd | 1 cleanNLP-1.5.2/cleanNLP/tests |only cleanNLP-1.5.2/cleanNLP/vignettes |only 66 files changed, 934 insertions(+), 335 deletions(-)
Title: Access to Abbyy Optical Character Recognition (OCR) API
Description: Get text from images of text using Abbyy Cloud Optical Character
Recognition (OCR) API. Easily OCR images, barcodes, forms, documents with
machine readable zones, e.g. passports. Get the results in a variety of formats
including plain text and XML. To learn more about the Abbyy OCR API, see
<http://ocrsdk.com/>.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between abbyyR versions 0.5.0 dated 2016-06-20 and 0.5.1 dated 2017-04-12
abbyyR-0.5.0/abbyyR/inst/extdata/Page_01.tif |only abbyyR-0.5.0/abbyyR/inst/extdata/doc10003.tif |only abbyyR-0.5.0/abbyyR/inst/extdata/t1.TIF |only abbyyR-0.5.0/abbyyR/inst/extdata/wisc_ads/PA_Casey_Rendell_Twisting.pdf |only abbyyR-0.5.0/abbyyR/inst/extdata/wisc_ads/PA_Fisher_Rendell_Liberal.pdf |only abbyyR-0.5.0/abbyyR/inst/extdata/wisc_ads/VA_Boucher_Healthcare.pdf |only abbyyR-0.5.0/abbyyR/inst/extdata/wisc_ads/VA_Goode_87_Yr_Old_Mom.pdf |only abbyyR-0.5.1/abbyyR/DESCRIPTION | 14 - abbyyR-0.5.1/abbyyR/MD5 | 118 ++++------ abbyyR-0.5.1/abbyyR/NAMESPACE | 1 abbyyR-0.5.1/abbyyR/NEWS.md | 21 + abbyyR-0.5.1/abbyyR/R/abbyyR.R | 1 abbyyR-0.5.1/abbyyR/R/deleteTask.R | 21 + abbyyR-0.5.1/abbyyR/R/getAppInfo.R | 2 abbyyR-0.5.1/abbyyR/R/getResults.R | 8 abbyyR-0.5.1/abbyyR/R/getTaskStatus.R | 12 - abbyyR-0.5.1/abbyyR/R/listFinishedTasks.R | 10 abbyyR-0.5.1/abbyyR/R/listTasks.R | 27 -- abbyyR-0.5.1/abbyyR/R/ocrFile.R | 16 + abbyyR-0.5.1/abbyyR/R/processBarcodeField.R | 4 abbyyR-0.5.1/abbyyR/R/processBusinessCard.R | 6 abbyyR-0.5.1/abbyyR/R/processCheckmarkField.R | 2 abbyyR-0.5.1/abbyyR/R/processDocument.R | 56 +++- abbyyR-0.5.1/abbyyR/R/processFields.R | 12 - abbyyR-0.5.1/abbyyR/R/processImage.R | 50 +++- abbyyR-0.5.1/abbyyR/R/processMRZ.R | 4 abbyyR-0.5.1/abbyyR/R/processPhotoId.R | 10 abbyyR-0.5.1/abbyyR/R/processRemoteImage.R | 42 ++- abbyyR-0.5.1/abbyyR/R/processTextField.R | 4 abbyyR-0.5.1/abbyyR/R/submitImage.R | 2 abbyyR-0.5.1/abbyyR/README.md | 5 abbyyR-0.5.1/abbyyR/build/vignette.rds |binary abbyyR-0.5.1/abbyyR/inst/doc/example.html | 19 + abbyyR-0.5.1/abbyyR/inst/doc/overview.html | 19 + abbyyR-0.5.1/abbyyR/inst/doc/wiscads.Rmd | 2 abbyyR-0.5.1/abbyyR/inst/doc/wiscads.html | 21 + abbyyR-0.5.1/abbyyR/inst/extdata/doc10003.png |only abbyyR-0.5.1/abbyyR/man/abbyyR-package.Rd | 3 abbyyR-0.5.1/abbyyR/man/abbyy_GET.Rd | 1 abbyyR-0.5.1/abbyyR/man/abbyy_POST.Rd | 1 abbyyR-0.5.1/abbyyR/man/abbyy_check.Rd | 1 abbyyR-0.5.1/abbyyR/man/deleteTask.Rd | 8 abbyyR-0.5.1/abbyyR/man/getAppInfo.Rd | 1 abbyyR-0.5.1/abbyyR/man/getResults.Rd | 1 abbyyR-0.5.1/abbyyR/man/getTaskStatus.Rd | 7 abbyyR-0.5.1/abbyyR/man/listFinishedTasks.Rd | 3 abbyyR-0.5.1/abbyyR/man/listTasks.Rd | 7 abbyyR-0.5.1/abbyyR/man/ocrFile.Rd | 5 abbyyR-0.5.1/abbyyR/man/processBarcodeField.Rd | 1 abbyyR-0.5.1/abbyyR/man/processBusinessCard.Rd | 1 abbyyR-0.5.1/abbyyR/man/processCheckmarkField.Rd | 1 abbyyR-0.5.1/abbyyR/man/processDocument.Rd | 39 ++- abbyyR-0.5.1/abbyyR/man/processFields.Rd | 5 abbyyR-0.5.1/abbyyR/man/processImage.Rd | 38 ++- abbyyR-0.5.1/abbyyR/man/processMRZ.Rd | 1 abbyyR-0.5.1/abbyyR/man/processPhotoId.Rd | 7 abbyyR-0.5.1/abbyyR/man/processRemoteImage.Rd | 31 +- abbyyR-0.5.1/abbyyR/man/processTextField.Rd | 1 abbyyR-0.5.1/abbyyR/man/setapp.Rd | 1 abbyyR-0.5.1/abbyyR/man/submitImage.Rd | 1 abbyyR-0.5.1/abbyyR/tests/testthat/test-get-results.R | 4 abbyyR-0.5.1/abbyyR/tests/testthat/test-list-tasks.R | 6 abbyyR-0.5.1/abbyyR/vignettes/wiscads.Rmd | 2 abbyyR-0.5.1/abbyyR/vignettes/wiscads.md | 2 64 files changed, 400 insertions(+), 288 deletions(-)
Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement complex
random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain an
efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Alex Forrence [ctb],
Christoffer Moesgaard Albertsen [ctb],
Cole Monnahan [ctb]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.7.8 dated 2017-02-08 and 1.7.9 dated 2017-04-12
DESCRIPTION | 10 +++--- MD5 | 18 +++++------ NEWS | 14 ++++++++ R/TMB.R | 1 R/examples.R | 2 - inst/include/config.hpp | 10 +++--- inst/include/convert.hpp | 11 ++++++ inst/include/tmb_core.hpp | 59 +++++++++++++++++++++++-------------- inst/include/tmbutils/autodiff.hpp | 13 ++++---- inst/include/tmbutils/vector.hpp | 12 ++++--- 10 files changed, 99 insertions(+), 51 deletions(-)
Title: Test Analysis Modules
Description:
Includes marginal maximum likelihood estimation of uni- and
multidimensional item response models (Rasch, 2PL, 3PL,
Generalized Partial Credit, Multi Facets,
Nominal Item Response, Structured Latent Class Analysis,
Mixture Distribution IRT Models, Located Latent Class Models)
and joint maximum likelihood estimation for models
from the Rasch family.
Latent regression models and plausible value imputation are
also supported.
Author:
Alexander Robitzsch [aut, cre], Thomas Kiefer [aut], Margaret Wu [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between TAM versions 1.99999-31 dated 2017-03-02 and 2.0-37 dated 2017-04-12
TAM-1.99999-31/TAM/R/TAM.itempartable.R |only TAM-1.99999-31/TAM/R/TAM_utils.R |only TAM-1.99999-31/TAM/R/calc_exp_TK.R |only TAM-1.99999-31/TAM/R/calc_posterior.v2.R |only TAM-1.99999-31/TAM/R/calc_prob.v5.R |only TAM-1.99999-31/TAM/R/mml.3pl.TAM.ic.R |only TAM-1.99999-31/TAM/R/mml.3pl.TAM.itempartable.R |only TAM-1.99999-31/TAM/R/mml.3pl.calc_prob.v5.R |only TAM-1.99999-31/TAM/R/mml.3pl.distrubutionmoments.R |only TAM-1.99999-31/TAM/R/stud_prior.R |only TAM-2.0-37/TAM/DESCRIPTION | 14 TAM-2.0-37/TAM/MD5 | 141 +++--- TAM-2.0-37/TAM/NAMESPACE | 8 TAM-2.0-37/TAM/R/IRT.drawPV.R | 106 ++--- TAM-2.0-37/TAM/R/IRT.informationCurve.R | 12 TAM-2.0-37/TAM/R/IRT.irfprob.tam.R | 4 TAM-2.0-37/TAM/R/Mstep_slope.v2.R | 2 TAM-2.0-37/TAM/R/RcppExports.R | 4 TAM-2.0-37/TAM/R/logLik.tam.jml.R |only TAM-2.0-37/TAM/R/plot.tam.R | 2 TAM-2.0-37/TAM/R/print.tam.R | 2 TAM-2.0-37/TAM/R/summary.msq.itemfit.R | 1 TAM-2.0-37/TAM/R/summary.msq.itemfitWLE.R | 1 TAM-2.0-37/TAM/R/summary.tam.R | 19 TAM-2.0-37/TAM/R/summary.tam.jml.R | 26 - TAM-2.0-37/TAM/R/summary.tam.mml.3pl.R | 70 ++- TAM-2.0-37/TAM/R/summary.tamaan.3pl.intro.R | 2 TAM-2.0-37/TAM/R/tam.calc.counts.R | 30 - TAM-2.0-37/TAM/R/tam.jml.R | 348 +--------------- TAM-2.0-37/TAM/R/tam.jml.fit.R | 2 TAM-2.0-37/TAM/R/tam.jml.wle.R | 2 TAM-2.0-37/TAM/R/tam.jml.xsi.R | 7 TAM-2.0-37/TAM/R/tam.jml.xsi2.R | 8 TAM-2.0-37/TAM/R/tam.jml2.R | 360 ----------------- TAM-2.0-37/TAM/R/tam.latreg.R | 6 TAM-2.0-37/TAM/R/tam.mml.2pl.R | 17 TAM-2.0-37/TAM/R/tam.mml.3pl.R | 395 +++++++++---------- TAM-2.0-37/TAM/R/tam.mml.3pl.algorithm.R | 62 -- TAM-2.0-37/TAM/R/tam.mml.3pl.est.guessing.R | 6 TAM-2.0-37/TAM/R/tam.mml.3pl.est.slopes.R | 12 TAM-2.0-37/TAM/R/tam.mml.R | 35 + TAM-2.0-37/TAM/R/tam.mml.mfr.R | 38 - TAM-2.0-37/TAM/R/tam.pv.R | 9 TAM-2.0-37/TAM/R/tam.se.R | 6 TAM-2.0-37/TAM/R/tam.wle.R | 2 TAM-2.0-37/TAM/R/tam_calc_exp.R |only TAM-2.0-37/TAM/R/tam_calc_posterior.R |only TAM-2.0-37/TAM/R/tam_calc_prob_helper_subtract_max.R |only TAM-2.0-37/TAM/R/tam_dtnorm.R |only TAM-2.0-37/TAM/R/tam_ginv.R |only TAM-2.0-37/TAM/R/tam_itempartable.R |only TAM-2.0-37/TAM/R/tam_jml_version1.R |only TAM-2.0-37/TAM/R/tam_jml_version2.R |only TAM-2.0-37/TAM/R/tam_mml_3pl_calc_exp.R | 2 TAM-2.0-37/TAM/R/tam_mml_3pl_calc_prob.R | 25 - TAM-2.0-37/TAM/R/tam_mml_3pl_deviance.R |only TAM-2.0-37/TAM/R/tam_mml_3pl_distributionmoments.R |only TAM-2.0-37/TAM/R/tam_mml_3pl_expected_counts.R |only TAM-2.0-37/TAM/R/tam_mml_3pl_ic.R |only TAM-2.0-37/TAM/R/tam_mml_3pl_itempartable.R |only TAM-2.0-37/TAM/R/tam_mml_3pl_mstep_regression.R | 97 ++-- TAM-2.0-37/TAM/R/tam_mml_3pl_skillspace.R |only TAM-2.0-37/TAM/R/tam_mml_3pl_variance_fixed.R |only TAM-2.0-37/TAM/R/tam_mml_calc_prob.R |only TAM-2.0-37/TAM/R/tam_mml_mstep_xsi.R | 4 TAM-2.0-37/TAM/R/tam_normalize_matrix_rows.R |only TAM-2.0-37/TAM/R/tam_packageinfo.R |only TAM-2.0-37/TAM/R/tam_print_call.R |only TAM-2.0-37/TAM/R/tam_rsessinfo.R |only TAM-2.0-37/TAM/R/tam_stud_prior.R |only TAM-2.0-37/TAM/R/tam_stud_prior_multiple_groups.R |only TAM-2.0-37/TAM/R/tam_thurstonian_threshold.R | 2 TAM-2.0-37/TAM/R/tamaanify.modelprior.R | 49 +- TAM-2.0-37/TAM/R/tampv2datalist.R | 14 TAM-2.0-37/TAM/R/zzz.R | 8 TAM-2.0-37/TAM/inst/CITATION | 6 TAM-2.0-37/TAM/inst/NEWS | 34 + TAM-2.0-37/TAM/man/TAM-defunct.Rd |only TAM-2.0-37/TAM/man/TAM-package.Rd | 2 TAM-2.0-37/TAM/man/TAM-utilities.Rd |only TAM-2.0-37/TAM/man/cfa.extract.itempars.Rd | 2 TAM-2.0-37/TAM/man/data.geiser.Rd | 17 TAM-2.0-37/TAM/man/data.timssAusTwn.Rd | 6 TAM-2.0-37/TAM/man/tam.jml.Rd | 53 +- TAM-2.0-37/TAM/man/tam.mml.3pl.Rd | 29 - TAM-2.0-37/TAM/man/tam.mml.Rd | 27 - TAM-2.0-37/TAM/src/RcppExports.cpp | 14 TAM-2.0-37/TAM/src/init.c | 2 TAM-2.0-37/TAM/src/tam_helper_ccode.cpp | 47 ++ 89 files changed, 822 insertions(+), 1377 deletions(-)
More information about ROI.plugin.clp at CRAN
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Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air
pollution data. Data are typically hourly time series
and both monitoring data and dispersion model output
can be analysed. Many functions can also be applied to
other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 2.0-0 dated 2016-11-23 and 2.1-0 dated 2017-04-12
DESCRIPTION | 14 +- MD5 | 133 +++++++++---------- NAMESPACE | 5 R/TheilSen.R | 7 + R/aqStats.R | 8 - R/percentileRose.R | 307 +++++++++++++++++++++++--------------------- R/polarPlot.R | 4 R/quickText.R | 2 R/scatterPlot.R | 28 ++-- R/trajCluster.R | 2 R/utilities.R | 116 +++++++++++++++- R/windRose.R | 11 + README.md | 4 man/TaylorDiagram.Rd | 7 - man/TheilSen.Rd | 7 - man/airbaseFindCode.Rd | 7 - man/airbaseInfo.Rd | 7 - man/airbaseSplice.Rd | 1 man/airbaseStats.Rd | 1 man/aqStats.Rd | 1 man/binData.Rd |only man/bootMeanDF.Rd |only man/calcFno2.Rd | 7 - man/calcPercentile.Rd | 7 - man/calendarPlot.Rd | 7 - man/conditionalEval.Rd | 7 - man/conditionalQuantile.Rd | 7 - man/corPlot.Rd | 9 - man/cutData.Rd | 1 man/drawOpenKey.Rd | 13 - man/import.Rd | 7 - man/importADMS.Rd | 7 - man/importAURN.Rd | 7 - man/importAURNCsv.Rd | 7 - man/importAirbase.Rd | 7 - man/importKCL.Rd | 7 - man/importMeta.Rd | 7 - man/importSAQN.Rd | 7 - man/importTraj.Rd | 7 - man/kernelExceed.Rd | 7 - man/linearRelation.Rd | 7 - man/modStats.Rd | 7 - man/mydata.Rd | 1 man/openColours.Rd | 7 - man/openair.Rd | 7 - man/percentileRose.Rd | 267 ++++++++++++++++++++------------------ man/polarAnnulus.Rd | 7 - man/polarCluster.Rd | 7 - man/polarFreq.Rd | 7 - man/polarPlot.Rd | 7 - man/quickText.Rd | 1 man/rollingMean.Rd | 1 man/scatterPlot.Rd | 9 - man/selectByDate.Rd | 1 man/selectRunning.Rd | 1 man/smoothTrend.Rd | 7 - man/splitByDate.Rd | 1 man/summaryPlot.Rd | 1 man/timeAverage.Rd | 7 - man/timePlot.Rd | 7 - man/timeProp.Rd | 7 - man/timeVariation.Rd | 7 - man/trajCluster.Rd | 7 - man/trajLevel.Rd | 7 - man/trajPlot.Rd | 7 - man/trendLevel.Rd | 7 - man/windRose.Rd | 11 - src/registerDynamicSymbol.c |only tools |only 69 files changed, 667 insertions(+), 546 deletions(-)
Title: Containerize R Markdown Documents
Description: Persistent reproducible reporting by containerization of R Markdown documents.
Author: Nan Xiao [aut, cre],
Miaozhu Li [ctb],
Tengfei Yin [ctb]
Maintainer: Nan Xiao <me@nanx.me>
Diff between liftr versions 0.4 dated 2016-08-05 and 0.5 dated 2017-04-12
liftr-0.4/liftr/R/drender.R |only liftr-0.4/liftr/inst/Dockerfile.Rmd |only liftr-0.4/liftr/inst/Rabixfile.Rmd |only liftr-0.4/liftr/inst/biocpkg.Rmd |only liftr-0.4/liftr/inst/cranpkg.Rmd |only liftr-0.4/liftr/inst/docker.Rmd |only liftr-0.4/liftr/inst/ghpkg.Rmd |only liftr-0.4/liftr/inst/pandoc.Rmd |only liftr-0.4/liftr/inst/rabix.Rmd |only liftr-0.4/liftr/inst/syslib.Rmd |only liftr-0.4/liftr/inst/texlive.Rmd |only liftr-0.4/liftr/man/drender.Rd |only liftr-0.5/liftr/DESCRIPTION | 29 - liftr-0.5/liftr/LICENSE |only liftr-0.5/liftr/MD5 | 68 +- liftr-0.5/liftr/NAMESPACE | 6 liftr-0.5/liftr/NEWS.md | 61 +- liftr-0.5/liftr/R/addins.R |only liftr-0.5/liftr/R/lift.R | 219 ++------- liftr-0.5/liftr/R/liftr-package.R | 16 liftr-0.5/liftr/R/parsers.R |only liftr-0.5/liftr/R/purge.R |only liftr-0.5/liftr/R/render_docker.R |only liftr-0.5/liftr/R/utils.R | 55 +- liftr-0.5/liftr/README.md | 38 + liftr-0.5/liftr/TODO |only liftr-0.5/liftr/build/vignette.rds |binary liftr-0.5/liftr/inst/doc/liftr-intro.R | 23 - liftr-0.5/liftr/inst/doc/liftr-intro.Rmd | 228 +++++---- liftr-0.5/liftr/inst/doc/liftr-intro.html | 551 +++++++++++++++--------- liftr-0.5/liftr/inst/examples |only liftr-0.5/liftr/inst/rstudio |only liftr-0.5/liftr/inst/templates |only liftr-0.5/liftr/man/addin_lift.Rd |only liftr-0.5/liftr/man/addin_lift_render_docker.Rd |only liftr-0.5/liftr/man/addin_purge_image.Rd |only liftr-0.5/liftr/man/lift.Rd | 48 +- liftr-0.5/liftr/man/liftr-package.Rd | 13 liftr-0.5/liftr/man/purge_container.Rd |only liftr-0.5/liftr/man/purge_image.Rd |only liftr-0.5/liftr/man/render_docker.Rd |only liftr-0.5/liftr/vignettes/header.html | 2 liftr-0.5/liftr/vignettes/liftr-intro.Rmd | 228 +++++---- liftr-0.5/liftr/vignettes/liftr.css | 95 +++- 44 files changed, 972 insertions(+), 708 deletions(-)
Title: Imputation for Proteomics
Description: Functions to analyse missing value mechanisms and to impute data sets in the context of bottom-up MS-based proteomics.
Author: Quentin Giai Gianetto
Maintainer: Quentin Giai Gianetto <quentin2g@yahoo.fr>
Diff between imp4p versions 0.2 dated 2016-10-25 and 0.3 dated 2017-04-12
DESCRIPTION | 11 ++- MD5 | 65 ++++++++++++++--------- NAMESPACE | 2 R/RcppExports.R |only R/estim_bound.R | 10 +-- R/estim_mix.R | 88 ++++++++++++++++++------------- R/impute_igcda.R | 14 +---- R/impute_mi.R | 39 ++++++-------- R/impute_slsa.R | 100 ++++++++++++++++++------------------ R/mi_mix.R | 116 +++++++++++++++++++++--------------------- R/sim_data.R | 85 +++++++++++++++--------------- man/estim_bound.Rd | 8 +- man/estim_mix.Rd | 58 ++++++++++----------- man/fast_apply_nb_na.Rd |only man/fast_apply_nb_not_na.Rd |only man/fast_apply_sd_na_rm_T.Rd |only man/fast_apply_sum_na_rm_T.Rd |only man/fast_sim.Rd |only man/impute_igcda.Rd | 6 +- man/impute_mi.Rd | 16 ++--- man/impute_mix.Rd | 12 ++-- man/impute_pa.Rd | 4 - man/impute_rand.Rd | 6 +- man/impute_slsa.Rd | 6 +- man/mi_mix.Rd | 4 - man/miss_mcar_process.Rd | 2 man/miss_mnar_process.Rd | 2 man/miss_total_process.Rd | 2 man/pi_mcar_karpievitch.Rd | 2 man/pi_mcar_logit.Rd | 2 man/pi_mcar_probit.Rd | 2 man/proba_mcar_tab.Rd | 12 +++- man/sim_data.Rd | 10 +-- src |only 34 files changed, 359 insertions(+), 325 deletions(-)
Title: Plotting for Bayesian Models
Description: Plotting functions for posterior analysis, model checking,
and MCMC diagnostics. The package is designed not only to provide convenient
functionality for users, but also a common set of functions that can be
easily used by developers working on a variety of R packages for Bayesian
modeling, particularly (but not exclusively) packages interfacing with Stan.
Author: Jonah Gabry [aut, cre],
Paul-Christian Buerkner [ctb]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between bayesplot versions 1.1.0 dated 2016-12-20 and 1.2.0 dated 2017-04-12
DESCRIPTION | 18 MD5 | 157 ++--- NAMESPACE | 18 NEWS.md | 56 + R/available-module-functions.R | 66 +- R/bayesplot-colors.R | 70 +- R/bayesplot-helpers.R | 71 ++ R/helpers-gg.R | 3 R/helpers-mcmc.R | 16 R/helpers-ppc.R | 15 R/helpers-testthat.R | 3 R/mcmc-alg-nuts.R | 310 ++++------ R/mcmc-combo.R | 10 R/mcmc-diagnostics.R | 13 R/mcmc-distributions.R | 3 R/mcmc-intervals.R | 11 R/mcmc-overview.R | 6 R/mcmc-recover.R | 202 ++++++ R/mcmc-scatterplots.R | 833 ++++++++++++++++++++++++---- R/mcmc-traces.R | 52 + R/ppc-discrete.R |only R/ppc-distributions.R | 80 ++ R/ppc-intervals.R | 69 +- R/ppc-loo.R |only R/ppc-overview.R | 25 build/vignette.rds |binary inst/CITATION |only inst/doc/MCMC-diagnostics.R | 4 inst/doc/MCMC-diagnostics.Rmd | 55 - inst/doc/MCMC-diagnostics.html | 102 +-- inst/doc/MCMC.R | 14 inst/doc/MCMC.Rmd | 39 - inst/doc/MCMC.html | 62 +- inst/doc/PPC.R | 20 inst/doc/PPC.Rmd | 36 - inst/doc/PPC.html | 97 +-- man/MCMC-combos.Rd | 1 man/MCMC-diagnostics.Rd | 27 man/MCMC-distributions.Rd | 37 - man/MCMC-intervals.Rd | 43 + man/MCMC-nuts.Rd | 55 + man/MCMC-overview.Rd | 10 man/MCMC-recover.Rd | 54 + man/MCMC-scatterplots.Rd | 292 ++++++++- man/MCMC-traces.Rd | 48 + man/PPC-discrete.Rd |only man/PPC-distributions.Rd | 42 + man/PPC-errors.Rd | 10 man/PPC-intervals.Rd | 15 man/PPC-loo.Rd |only man/PPC-overview.Rd | 34 - man/PPC-scatterplots.Rd | 7 man/PPC-test-statistics.Rd | 11 man/available_ppc.Rd | 14 man/bayesplot-colors.Rd | 41 - man/bayesplot-extractors.Rd | 13 man/bayesplot-helpers.Rd | 76 ++ man/bayesplot-package.Rd | 4 man/bayesplot_grid.Rd | 1 man/example-data.Rd | 7 man/pp_check.Rd | 1 man/theme_default.Rd | 1 tests/testthat.R | 1 tests/testthat/Rplots.pdf |binary tests/testthat/test-aesthetics.R | 24 tests/testthat/test-available_ppc.R | 6 tests/testthat/test-bayesplot_grid.R | 1 tests/testthat/test-convenience-functions.R | 44 + tests/testthat/test-extractors.R | 6 tests/testthat/test-helpers-mcmc.R | 9 tests/testthat/test-helpers-ppc.R | 17 tests/testthat/test-mcmc-nuts.R | 14 tests/testthat/test-mcmc-recover.R | 23 tests/testthat/test-mcmc-scatterplots.R | 283 ++++++++- tests/testthat/test-mcmc-traces.R | 9 tests/testthat/test-ppc-discrete.R |only tests/testthat/test-ppc-distributions.R | 1 tests/testthat/test-ppc-intervals.R | 4 tests/testthat/test-ppc-loo.R |only vignettes/MCMC-diagnostics.Rmd | 55 - vignettes/MCMC.Rmd | 39 - vignettes/PPC.Rmd | 36 - vignettes/children/SETTINGS-knitr.txt | 2 83 files changed, 2913 insertions(+), 1041 deletions(-)
More information about SeerMapperEast at CRAN
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Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available. The methods are described in
Hothorn et al. (2006) <doi:10.1198/106186006X133933>,
Zeileis et al. (2008) <doi:10.1198/106186008X319331> and
Strobl et al. (2007) <doi:10.1186/1471-2105-8-25>.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut],
Carolin Strobl [aut],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.2-2 dated 2017-02-27 and 1.2-3 dated 2017-04-12
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ build/vignette.rds |binary inst/NEWS | 17 +++++++++++++++++ inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary src/Convenience.c | 4 +++- src/IndependenceTest.c | 8 +++++++- src/Predict.c | 24 +++++++++--------------- src/Splits.c | 4 +++- src/SurrogateSplits.c | 4 +++- src/Utils.c | 7 ++++++- tests/Examples/party-Ex.Rout.save | 18 +++++++++--------- 13 files changed, 74 insertions(+), 46 deletions(-)
Title: Neyman Smooth Tests of Normality for the Errors of ARMA Models
Description: Tests the goodness-of-fit to the Normal distribution for the errors of an ARMA model.
Author: Pierre Duchesne and Pierre Lafaye de Micheaux
Maintainer: Pierre Lafaye de Micheaux <lafaye@unsw.edu.au>
Diff between nortestARMA versions 1.0 dated 2016-05-04 and 1.0.1 dated 2017-04-12
DESCRIPTION | 10 +++++----- MD5 | 29 ++++++++++++++++------------- NAMESPACE | 2 +- inst |only src/calcstat.cpp | 2 ++ src/polys/H1.cpp | 18 ++++++------------ src/polys/H10.cpp | 18 ++++++------------ src/polys/H2.cpp | 16 +++++----------- src/polys/H3.cpp | 18 ++++++------------ src/polys/H4.cpp | 18 ++++++------------ src/polys/H5.cpp | 18 ++++++------------ src/polys/H6.cpp | 18 ++++++------------ src/polys/H7.cpp | 18 ++++++------------ src/polys/H8.cpp | 18 ++++++------------ src/polys/H9.cpp | 18 ++++++------------ src/registerDynamicSymbol.c |only 16 files changed, 83 insertions(+), 138 deletions(-)
Title: Distribution Function of Quadratic Forms in Normal Variables
Description: Computes the distribution function of quadratic forms in normal variables using Imhof's method, Davies's algorithm, Farebrother's algorithm or Liu et al.'s algorithm.
Author: P. Lafaye de Micheaux
Maintainer: P. Lafaye de Micheaux <lafaye@unsw.edu.au>
Diff between CompQuadForm versions 1.4.2 dated 2016-09-19 and 1.4.3 dated 2017-04-12
DESCRIPTION | 10 +++++----- MD5 | 23 ++++++++++++----------- NAMESPACE | 2 +- TODO | 26 ++++++++++++++++++++++++++ inst/HISTORY | 10 ++++++++++ man/davies.Rd | 4 ++-- man/farebrother.Rd | 7 ++++--- man/imhof.Rd | 7 ++++--- man/liu.Rd | 5 +++-- src/imhof.cpp | 5 +++++ src/qfc.cpp | 9 +++++++++ src/registerDynamicSymbol.c |only src/ruben.cpp | 6 ++++++ 13 files changed, 87 insertions(+), 27 deletions(-)
Title: Calculate the Standardized Difference for Numeric, Binary and
Category Variables
Description: Contains three main functions including
stddiff.numeric(), stddiff.binary() and stddiff.category().
These are used to calculate the standardized difference between two groups.
It is especially used to evaluate the balance between two groups
before and after propensity score matching.
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>
Diff between stddiff versions 1.0 dated 2016-06-16 and 2.0 dated 2017-04-12
DESCRIPTION | 10 ++-- MD5 | 8 +-- NAMESPACE | 1 R/stddiff.R | 133 ++++++++++++++++++++++++++++----------------------------- man/stddiff.Rd | 18 ++++--- 5 files changed, 87 insertions(+), 83 deletions(-)
Title: Perform JIVE Decomposition for Multi-Source Data
Description: Performs the JIVE decomposition on a list of data sets when the data share a dimension, returning low-rank matrices that capture the joint and individual structure of the data [O'Connell, MJ and Lock, EF (2016) <doi:10.1093/bioinformatics/btw324>]. It provides two methods of rank selection when the rank is unknown, a permutation test and a BIC selection algorithm. Also included in the package are three plotting functions for visualizing the variance attributed to each data source: a bar plot that shows the percentages of the variability attributable to joint and individual structure, a heatmap that shows the structure of the variability, and principal component plots.
Author: Michael J. O'Connell and Eric F. Lock
Maintainer: Michael J. O'Connell <oconn725@umn.edu>
Diff between r.jive versions 1.7 dated 2016-07-25 and 2.1 dated 2017-04-12
DESCRIPTION | 14 +++++++------- MD5 | 14 ++++++++------ NAMESPACE | 2 +- R/jive.predict.r |only R/jive.r | 21 ++++++++++++++++++--- data/SimResults.rda |binary man/jive.Rd | 3 ++- man/jive.predict.Rd |only man/r.jive-package.Rd | 6 +++--- 9 files changed, 39 insertions(+), 21 deletions(-)
Title: IUCN Redlisting Tools
Description: Includes algorithms to facilitate the assessment of extinction
risk of species according to the IUCN (International Union for Conservation of
Nature, see <http://www.iucn.org> for more information) red list criteria.
Author: Pedro Cardoso
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Diff between red versions 1.0.0 dated 2017-02-23 and 1.0.1 dated 2017-04-12
DESCRIPTION | 14 +++++----- MD5 | 66 ++++++++++++++++++++++++------------------------ NAMESPACE | 1 R/red.R | 27 ++++++------------- man/aoo.Rd | 1 man/countries.Rd | 1 man/elevation.Rd | 1 man/eoo.Rd | 1 man/kml.Rd | 1 man/map.draw.Rd | 1 man/map.easy.Rd | 1 man/map.habitat.Rd | 1 man/map.points.Rd | 1 man/map.sdm.Rd | 1 man/outliers.Rd | 1 man/raster.clean.Rd | 1 man/raster.east.Rd | 1 man/raster.lat.Rd | 1 man/raster.long.Rd | 1 man/raster.north.Rd | 1 man/raster.read.Rd | 1 man/raster.reduce.Rd | 1 man/records.Rd | 1 man/red.distribution.Rd | 1 man/red.getDir.Rd | 1 man/red.layers.Rd | 1 man/red.records.Rd | 1 man/red.setDir.Rd | 1 man/red.setup.Rd | 1 man/rli.Rd | 1 man/rli.multi.Rd | 1 man/rli.sampled.Rd | 1 man/thin.Rd | 1 man/worldborders.Rd | 1 34 files changed, 50 insertions(+), 88 deletions(-)
Title: Add a Scale Bar to 'OpenStreetMap' Plots
Description: Functionality to handle and project lat-long coordinates, easily download background maps
and add a correct scale bar to 'OpenStreetMap' plots in any map projection.
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>
Diff between OSMscale versions 0.4.1 dated 2017-01-19 and 0.5.1 dated 2017-04-12
DESCRIPTION | 13 +-- MD5 | 48 +++++++------ NAMESPACE | 3 NEWS | 12 +++ R/OSMscale-package.R | 4 - R/checkLL.R | 154 ++++++++++++++++++++---------------------- R/earthDist.R | 174 ++++++++++++++++++++++-------------------------- R/maxEarthDist.R |only R/pointsMap.R | 12 ++- R/projectPoints.R | 4 - R/scaleBar.R | 50 +++++++++++-- README.md | 43 ++++++++--- man/OSMscale-package.Rd | 13 +-- man/biketrack.Rd | 1 man/checkLL.Rd | 23 ++---- man/degree.Rd | 7 - man/earthDist.Rd | 29 +------- man/equidistPoints.Rd | 7 - man/maxEarthDist.Rd |only man/pointsMap.Rd | 20 +++-- man/proj.Rd | 13 +-- man/projectPoints.Rd | 11 +-- man/randomPoints.Rd | 7 - man/scaleBar.Rd | 30 ++++++-- man/triangleArea.Rd | 7 - tests |only 26 files changed, 368 insertions(+), 317 deletions(-)
Title: Isoscape Computation and Inference of Spatial Origins using
Mixed Models
Description:
Building isoscapes using mixed models and inferring the geographic origin of
organisms based on their isotopic ratios. This package is essentially a
simplified interface to several other packages. It uses 'spaMM' for fitting
and predicting isoscapes, and assigning an organism's origin depending on its
isotopic ratio. 'IsoriX' also relies heavily on the package 'rasterVis' for
plotting the maps using lattice.
Author: Alexandre Courtiol [aut, cre], François Rousset [aut],
Stephanie Kramer-Schadt [aut]
Maintainer: Alexandre Courtiol <alexandre.courtiol@gmail.com>
Diff between IsoriX versions 0.4-1 dated 2016-09-11 and 0.5 dated 2017-04-12
IsoriX-0.4-1/IsoriX/R/Calibfit.R |only IsoriX-0.4-1/IsoriX/R/GetElev.R |only IsoriX-0.4-1/IsoriX/R/Isofit.R |only IsoriX-0.4-1/IsoriX/R/Isorix.R |only IsoriX-0.4-1/IsoriX/R/Isoscape.R |only IsoriX-0.4-1/IsoriX/R/Isosim.R |only IsoriX-0.4-1/IsoriX/R/QueryGNIP.R |only IsoriX-0.4-1/IsoriX/R/RElevate.R |only IsoriX-0.4-1/IsoriX/R/plot.isorix.R |only IsoriX-0.4-1/IsoriX/R/plot.isoscape.R |only IsoriX-0.4-1/IsoriX/R/print.methods.R |only IsoriX-0.4-1/IsoriX/data/GNIP_Europe.rda |only IsoriX-0.4-1/IsoriX/data/GNIP_Model.rda |only IsoriX-0.4-1/IsoriX/data/GNIP_World.rda |only IsoriX-0.4-1/IsoriX/data/assignmentdata.rda |only IsoriX-0.4-1/IsoriX/data/calibrationdata.rda |only IsoriX-0.4-1/IsoriX/data/elevationrastersmall.rda |only IsoriX-0.4-1/IsoriX/data/isorixpalette.rda |only IsoriX-0.4-1/IsoriX/data/isoscapepalette.rda |only IsoriX-0.4-1/IsoriX/data/worldcountries.rda |only IsoriX-0.4-1/IsoriX/man/Calibfit.Rd |only IsoriX-0.4-1/IsoriX/man/GNIP_Europe.Rd |only IsoriX-0.4-1/IsoriX/man/GNIP_Model.Rd |only IsoriX-0.4-1/IsoriX/man/GNIP_World.Rd |only IsoriX-0.4-1/IsoriX/man/GetElev.Rd |only IsoriX-0.4-1/IsoriX/man/Isofit.Rd |only IsoriX-0.4-1/IsoriX/man/Isorix.Rd |only IsoriX-0.4-1/IsoriX/man/Isoscape.Rd |only IsoriX-0.4-1/IsoriX/man/Isosim.Rd |only IsoriX-0.4-1/IsoriX/man/QueryGNIP.Rd |only IsoriX-0.4-1/IsoriX/man/RElevate.Rd |only IsoriX-0.4-1/IsoriX/man/assignmentdata.Rd |only IsoriX-0.4-1/IsoriX/man/calibrationdata.Rd |only IsoriX-0.4-1/IsoriX/man/elevationrastersmall.Rd |only IsoriX-0.4-1/IsoriX/man/isorixpalette.Rd |only IsoriX-0.4-1/IsoriX/man/print.methods.Rd |only IsoriX-0.5/IsoriX/DESCRIPTION | 26 +- IsoriX-0.5/IsoriX/MD5 | 102 ++++----- IsoriX-0.5/IsoriX/NAMESPACE | 4 IsoriX-0.5/IsoriX/R/IsoriX-internal.R | 138 ++++++------- IsoriX-0.5/IsoriX/R/calibfit.R |only IsoriX-0.5/IsoriX/R/getelev.R |only IsoriX-0.5/IsoriX/R/isofit.R |only IsoriX-0.5/IsoriX/R/isorix.R |only IsoriX-0.5/IsoriX/R/isoscape.R |only IsoriX-0.5/IsoriX/R/isosim.R |only IsoriX-0.5/IsoriX/R/plot.methods.R |only IsoriX-0.5/IsoriX/R/queryGNIP.R |only IsoriX-0.5/IsoriX/R/relevate.R |only IsoriX-0.5/IsoriX/build/vignette.rds |binary IsoriX-0.5/IsoriX/data/Europefit.rda |only IsoriX-0.5/IsoriX/data/GNIPdata.rda |only IsoriX-0.5/IsoriX/data/assigndata.rda |only IsoriX-0.5/IsoriX/data/calibdata.rda |only IsoriX-0.5/IsoriX/data/countries.rda |only IsoriX-0.5/IsoriX/data/datalist | 17 - IsoriX-0.5/IsoriX/data/elevraster.rda |only IsoriX-0.5/IsoriX/data/isopalette1.rda |only IsoriX-0.5/IsoriX/data/isopalette2.rda |only IsoriX-0.5/IsoriX/inst/CITATION | 23 +- IsoriX-0.5/IsoriX/inst/NEWS.Rd | 42 +++- IsoriX-0.5/IsoriX/inst/doc/Saveplot.pdf |binary IsoriX-0.5/IsoriX/inst/doc/Workflow.pdf |binary IsoriX-0.5/IsoriX/inst/doc/exportGIS.pdf |only IsoriX-0.5/IsoriX/inst/doc/exportGIS.pdf.asis |only IsoriX-0.5/IsoriX/inst/doc/sources_for_Saveplot.Rmd | 10 IsoriX-0.5/IsoriX/inst/doc/sources_for_Workflow.Rmd | 116 +++++------ IsoriX-0.5/IsoriX/inst/doc/sources_for_exportGIS.Rmd |only IsoriX-0.5/IsoriX/man/Europefit.Rd |only IsoriX-0.5/IsoriX/man/GNIPdata.Rd |only IsoriX-0.5/IsoriX/man/IsoriX-defunct.Rd |only IsoriX-0.5/IsoriX/man/IsoriX-package.Rd | 24 +- IsoriX-0.5/IsoriX/man/assigndata.Rd |only IsoriX-0.5/IsoriX/man/calibdata.Rd |only IsoriX-0.5/IsoriX/man/calibfit.Rd |only IsoriX-0.5/IsoriX/man/elevraster.Rd |only IsoriX-0.5/IsoriX/man/getelev.Rd |only IsoriX-0.5/IsoriX/man/isofit.Rd |only IsoriX-0.5/IsoriX/man/isopalettes.Rd |only IsoriX-0.5/IsoriX/man/isorix.Rd |only IsoriX-0.5/IsoriX/man/isoscape.Rd |only IsoriX-0.5/IsoriX/man/isosim.Rd |only IsoriX-0.5/IsoriX/man/oceanmask.Rd | 10 IsoriX-0.5/IsoriX/man/plot.methods.Rd | 196 +++++++++---------- IsoriX-0.5/IsoriX/man/queryGNIP.Rd |only IsoriX-0.5/IsoriX/man/relevate.Rd |only IsoriX-0.5/IsoriX/man/worldcountries.Rd | 22 +- IsoriX-0.5/IsoriX/vignettes/exportGIS.pdf.asis |only 88 files changed, 380 insertions(+), 350 deletions(-)
Title: Full Factorial Breeding Analysis
Description: We facilitate the analysis of full factorial mating designs with mixed-effects models. The observed data functions extract the variance explained by random and fixed effects and provide their significance. We then calculate the additive genetic, nonadditive genetic, and maternal variance components explaining the phenotype. In particular, we integrate nonnormal error structures for estimating these components for nonnormal data types. The resampled data functions are used to produce bootstrap confidence intervals, which can then be plotted using a simple function. This package will facilitate the analyses of full factorial mating designs in R, especially for the analysis of binary, proportion, and/or count data types and for the ability to incorporate additional random and fixed effects and power analyses. The paper associated with the package including worked examples is: Houde ALS, Pitcher TE (2016) <doi:10.1002/ece3.1943>.
Author: Aimee Lee Houde [aut, cre], Trevor Pitcher [aut]
Maintainer: Aimee Lee Houde <aimee.lee.houde@gmail.com>
Diff between fullfact versions 1.1 dated 2016-12-17 and 1.2 dated 2017-04-12
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NAMESPACE | 7 ++----- build/partial.rdb |binary 4 files changed, 11 insertions(+), 14 deletions(-)
Title: Help for Writing Unit Tests Based on Function Examples
Description: Take the examples written in your documentation of functions and
use them to create shells (skeletons which must be manually completed by
the user) of test files to be tested with the 'testthat' package.
Author: Rory Nolan [aut, cre],
Sergi Padilla-Parra [ths]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between exampletestr versions 0.3.0 dated 2017-03-18 and 0.4.0 dated 2017-04-12
exampletestr-0.3.0/exampletestr/inst/extdata/extract_examples_error1.R |only exampletestr-0.3.0/exampletestr/inst/extdata/extract_examples_error2.R |only exampletestr-0.3.0/exampletestr/inst/extdata/extract_examples_error3.R |only exampletestr-0.3.0/exampletestr/inst/extdata/test_exemplar.R |only exampletestr-0.3.0/exampletestr/man/TextEval.Rd |only exampletestr-0.3.0/exampletestr/man/text_eval_error.Rd |only exampletestr-0.4.0/exampletestr/DESCRIPTION | 14 exampletestr-0.4.0/exampletestr/MD5 | 54 - exampletestr-0.4.0/exampletestr/NAMESPACE | 5 exampletestr-0.4.0/exampletestr/NEWS.md | 11 exampletestr-0.4.0/exampletestr/R/exampletestr.R | 1 exampletestr-0.4.0/exampletestr/R/exemplar.R | 302 ++++------ exampletestr-0.4.0/exampletestr/R/utils.R | 80 +- exampletestr-0.4.0/exampletestr/README.md | 290 +++++---- exampletestr-0.4.0/exampletestr/inst/doc/exampletestr.R | 159 ++--- exampletestr-0.4.0/exampletestr/inst/doc/exampletestr.Rmd | 168 +++-- exampletestr-0.4.0/exampletestr/inst/doc/exampletestr.html | 296 +++++---- exampletestr-0.4.0/exampletestr/inst/extdata/exampletestr.R | 1 exampletestr-0.4.0/exampletestr/inst/extdata/exemplar.R | 280 ++++----- exampletestr-0.4.0/exampletestr/inst/extdata/extract_examples_rd.Rd |only exampletestr-0.4.0/exampletestr/inst/extdata/extract_examples_rd_noex.Rd |only exampletestr-0.4.0/exampletestr/inst/extdata/non_documented_fun.R |only exampletestr-0.4.0/exampletestr/inst/extdata/test_exemplar_uncompleted.R |only exampletestr-0.4.0/exampletestr/inst/extdata/utils.R | 94 +-- exampletestr-0.4.0/exampletestr/man/construct_expect_equal.Rd | 2 exampletestr-0.4.0/exampletestr/man/extract_examples.Rd | 36 - exampletestr-0.4.0/exampletestr/man/extract_examples_rd.Rd |only exampletestr-0.4.0/exampletestr/man/extract_expressions.Rd | 8 exampletestr-0.4.0/exampletestr/man/make_test_shell.Rd | 29 exampletestr-0.4.0/exampletestr/man/make_tests_shells_file.Rd | 47 - exampletestr-0.4.0/exampletestr/man/text_parse_error.Rd |only exampletestr-0.4.0/exampletestr/tests/testthat/test_exemplar.R | 170 +++-- exampletestr-0.4.0/exampletestr/tests/testthat/test_utils.R | 16 exampletestr-0.4.0/exampletestr/vignettes/exampletestr.Rmd | 168 +++-- 34 files changed, 1224 insertions(+), 1007 deletions(-)
Title: Access to Clarifai API
Description: Get description of images from Clarifai API. For more information,
see <http://clarifai.com>. Clarifai uses a large deep learning cloud to come
up with descriptive labels of the things in an image. It also provides how
confident it is about each of the labels.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between clarifai versions 0.4.0 dated 2016-08-28 and 0.4.2 dated 2017-04-12
DESCRIPTION | 10 +++--- MD5 | 66 +++++++++++++++++++++--------------------- NEWS.md | 13 +++++++- R/clarifai.R | 4 ++ R/feedback.R | 10 ++++-- R/get_color.R | 8 +++-- R/get_color_urls.R | 16 +++++----- R/get_info.R | 10 ++++-- R/get_langs.R | 9 +++-- R/get_token.R | 10 ++++-- R/get_usage.R | 9 +++-- R/secret_id.R | 4 ++ R/tag_image_urls.R | 38 ++++++++++++------------ R/tag_images.R | 45 ++++++++++++++-------------- README.md | 9 +++-- build/vignette.rds |binary inst/doc/poligrams.html | 15 ++++++--- inst/doc/using_clarifai.html | 15 ++++++--- man/clarifai-package.Rd | 9 ++--- man/clarifai_GET.Rd | 1 man/clarifai_POST.Rd | 1 man/clarifai_check_auth.Rd | 1 man/clarifai_check_results.Rd | 1 man/clarifai_check_token.Rd | 1 man/feedback.Rd | 5 ++- man/get_color.Rd | 5 ++- man/get_color_urls.Rd | 5 ++- man/get_info.Rd | 5 ++- man/get_langs.Rd | 5 ++- man/get_token.Rd | 4 +- man/get_usage.Rd | 5 ++- man/secret_id.Rd | 1 man/tag_image_urls.Rd | 5 ++- man/tag_images.Rd | 5 ++- 34 files changed, 212 insertions(+), 138 deletions(-)
Title: Install Packages from Snapshots on the Checkpoint Server for
Reproducibility
Description: The goal of checkpoint is to solve the problem of package
reproducibility in R. Specifically, checkpoint allows you to install packages
as they existed on CRAN on a specific snapshot date as if you had a CRAN time
machine. To achieve reproducibility, the checkpoint() function installs the
packages required or called by your project and scripts to a local library
exactly as they existed at the specified point in time. Only those packages
are available to your project, thereby avoiding any package updates that came
later and may have altered your results. In this way, anyone using checkpoint's
checkpoint() can ensure the reproducibility of your scripts or projects at any
time. To create the snapshot archives, once a day (at midnight UTC) Microsoft
refreshes the Austria CRAN mirror on the "Microsoft R Archived Network"
server (<https://mran.microsoft.com/>). Immediately after completion
of the rsync mirror process, the process takes a snapshot, thus creating the
archive. Snapshot archives exist starting from 2014-09-17.
Author: Microsoft Corporation
Maintainer: Andrie de Vries <adevries@microsoft.com>
Diff between checkpoint versions 0.3.22 dated 2017-04-07 and 0.4.0 dated 2017-04-12
DESCRIPTION | 10 - MD5 | 42 +++--- R/checkpoint.R | 41 ++---- R/checkpoint_internals.R | 8 - R/mock-install-packages.R | 21 +-- R/scanRepoPackages.R | 10 + build/vignette.rds |binary inst/doc/checkpoint.R | 26 +--- inst/doc/checkpoint.Rmd | 33 +++-- inst/doc/checkpoint.html | 181 ++++++++--------------------- inst/doc/managing-checkpoint-archives.R | 8 - inst/doc/managing-checkpoint-archives.Rmd | 15 +- inst/doc/managing-checkpoint-archives.html | 54 +++++--- inst/doc/using-checkpoint-with-knitr.R | 5 inst/doc/using-checkpoint-with-knitr.Rmd | 12 + inst/doc/using-checkpoint-with-knitr.html | 77 ++++++------ man/checkpoint.Rd | 4 tests/testthat/test-1-scan.R | 18 +- tests/testthat/test-3-checkpoint.R | 135 +++++++++++---------- vignettes/checkpoint.Rmd | 33 +++-- vignettes/managing-checkpoint-archives.Rmd | 15 +- vignettes/using-checkpoint-with-knitr.Rmd | 12 + 22 files changed, 360 insertions(+), 400 deletions(-)
Title: Brazilian Economic Time Series
Description: It provides access to and information about the most important
Brazilian economic time series - from the Getulio Vargas Foundation,
the Central Bank of Brazil and the Brazilian Institute of Geography
and Statistics. It also presents tools for managing, analysing (e.g.
generating dynamic reports with a complete analysis of a series) and exporting
these time series.
Author: Pedro Costa Ferreira [aut, cre],
Talitha Speranza [aut],
Jonatha Azevedo [aut]
Maintainer: Pedro Costa Ferreira <pedro.guilherme@fgv.br>
Diff between BETS versions 0.1.0 dated 2017-03-29 and 0.2.0 dated 2017-04-12
BETS-0.1.0/BETS/R/chart.add_basic.R |only BETS-0.1.0/BETS/R/chart.add_extra.R |only BETS-0.1.0/BETS/R/chart.add_notes.R |only BETS-0.1.0/BETS/R/draw.cdb.R |only BETS-0.1.0/BETS/R/draw.eap.R |only BETS-0.1.0/BETS/R/draw.indprod.R |only BETS-0.1.0/BETS/R/draw.ipca.R |only BETS-0.1.0/BETS/R/draw.selic.R |only BETS-0.1.0/BETS/R/draw.ulc.R |only BETS-0.1.0/BETS/R/draw.unemp.R |only BETS-0.1.0/BETS/R/draw.vargdp.R |only BETS-0.1.0/BETS/inst/inflation_dashboard.Rmd |only BETS-0.1.0/BETS/inst/inflation_dashboard.pdf |only BETS-0.1.0/BETS/inst/logo_bets.png |only BETS-0.1.0/BETS/inst/logo_fgv.png |only BETS-0.1.0/BETS/inst/logo_ibre.png |only BETS-0.1.0/BETS/inst/target_selic.csv |only BETS-0.1.0/BETS/inst/text.txt |only BETS-0.1.0/BETS/man/chart.add_basic.Rd |only BETS-0.1.0/BETS/man/chart.add_extra.Rd |only BETS-0.1.0/BETS/man/chart.add_notes.Rd |only BETS-0.1.0/BETS/man/draw.cdb.Rd |only BETS-0.1.0/BETS/man/draw.eap.Rd |only BETS-0.1.0/BETS/man/draw.indprod.Rd |only BETS-0.1.0/BETS/man/draw.ipca.Rd |only BETS-0.1.0/BETS/man/draw.selic.Rd |only BETS-0.1.0/BETS/man/draw.ulc.Rd |only BETS-0.1.0/BETS/man/draw.unemp.Rd |only BETS-0.1.0/BETS/man/draw.vargdp.Rd |only BETS-0.2.0/BETS/DESCRIPTION | 25 + BETS-0.2.0/BETS/MD5 | 152 ++++++----- BETS-0.2.0/BETS/NAMESPACE | 27 +- BETS-0.2.0/BETS/R/BETS.addin_en.R | 12 BETS-0.2.0/BETS/R/BETS.addin_pt.R | 30 +- BETS-0.2.0/BETS/R/BETS.chart.R | 165 ++++++------ BETS-0.2.0/BETS/R/BETS.corrgram.R | 3 BETS-0.2.0/BETS/R/BETS.dashboard.R | 36 -- BETS-0.2.0/BETS/R/BETS.deflate.R | 81 +++--- BETS-0.2.0/BETS/R/BETS.get.R | 134 +++++----- BETS-0.2.0/BETS/R/BETS.report.R | 63 ++++ BETS-0.2.0/BETS/R/BETS.save.R | 20 + BETS-0.2.0/BETS/R/BETS.search.R | 310 ++++++++++++------------ BETS-0.2.0/BETS/R/draw.animal_spirits.R |only BETS-0.2.0/BETS/R/draw.cap_utl.R |only BETS-0.2.0/BETS/R/draw.conf_lvl.R |only BETS-0.2.0/BETS/R/draw.ei_comps.R |only BETS-0.2.0/BETS/R/draw.ei_vars.R |only BETS-0.2.0/BETS/R/draw.gdp_comps.R |only BETS-0.2.0/BETS/R/draw.gdp_unemp.R |only BETS-0.2.0/BETS/R/draw.gdp_vars.R |only BETS-0.2.0/BETS/R/draw.iie_br.R |only BETS-0.2.0/BETS/R/draw.lab_mrkt.R |only BETS-0.2.0/BETS/R/draw.misery_index.R |only BETS-0.2.0/BETS/R/draw.survey.R |only BETS-0.2.0/BETS/R/msg.R | 3 BETS-0.2.0/BETS/inst/analysis_GRNN.Rmd | 1 BETS-0.2.0/BETS/inst/analysis_HOLT-WINTERS.Rmd | 3 BETS-0.2.0/BETS/inst/analysis_SARIMA.Rmd | 5 BETS-0.2.0/BETS/inst/cei.csv |only BETS-0.2.0/BETS/inst/ei_vars.csv |only BETS-0.2.0/BETS/inst/fecomercio.csv |only BETS-0.2.0/BETS/inst/fix_figs.tex | 2 BETS-0.2.0/BETS/inst/incerteza_fgv.csv |only BETS-0.2.0/BETS/inst/lei.csv |only BETS-0.2.0/BETS/inst/logo_sentiment.png |only BETS-0.2.0/BETS/inst/pib_comps.csv |only BETS-0.2.0/BETS/inst/pib_vars.csv |only BETS-0.2.0/BETS/inst/rstudio/addins.dcf | 22 - BETS-0.2.0/BETS/inst/sentiment_dashboard.Rmd |only BETS-0.2.0/BETS/inst/sondagem_fgv.csv |only BETS-0.2.0/BETS/inst/sondagens_completo_fgv.csv |only BETS-0.2.0/BETS/man/BETS.Rd | 1 BETS-0.2.0/BETS/man/BETS.addin_en.Rd | 1 BETS-0.2.0/BETS/man/BETS.addin_pt.Rd | 1 BETS-0.2.0/BETS/man/BETS.chart.Rd | 67 +++-- BETS-0.2.0/BETS/man/BETS.corrgram.Rd | 1 BETS-0.2.0/BETS/man/BETS.dashboard.Rd | 23 - BETS-0.2.0/BETS/man/BETS.deflate.Rd | 1 BETS-0.2.0/BETS/man/BETS.dummy.Rd | 1 BETS-0.2.0/BETS/man/BETS.get.Rd | 8 BETS-0.2.0/BETS/man/BETS.grnn.test.Rd | 1 BETS-0.2.0/BETS/man/BETS.grnn.train.Rd | 1 BETS-0.2.0/BETS/man/BETS.normalize.Rd | 1 BETS-0.2.0/BETS/man/BETS.predict.Rd | 1 BETS-0.2.0/BETS/man/BETS.report.Rd | 61 ++++ BETS-0.2.0/BETS/man/BETS.save.Rd | 1 BETS-0.2.0/BETS/man/BETS.save.sas.Rd | 1 BETS-0.2.0/BETS/man/BETS.save.spss.Rd | 1 BETS-0.2.0/BETS/man/BETS.save.stata.Rd | 1 BETS-0.2.0/BETS/man/BETS.search.Rd | 10 BETS-0.2.0/BETS/man/BETS.std_resid.Rd | 1 BETS-0.2.0/BETS/man/BETS.t_test.Rd | 1 BETS-0.2.0/BETS/man/BETS.ur_test.Rd | 1 BETS-0.2.0/BETS/man/check.series.Rd | 1 BETS-0.2.0/BETS/man/draw.animal_spirits.Rd |only BETS-0.2.0/BETS/man/draw.cap_utl.Rd |only BETS-0.2.0/BETS/man/draw.conf_lvl.Rd |only BETS-0.2.0/BETS/man/draw.ei_comps.Rd |only BETS-0.2.0/BETS/man/draw.ei_vars.Rd |only BETS-0.2.0/BETS/man/draw.gdp_comps.Rd |only BETS-0.2.0/BETS/man/draw.gdp_unemp.Rd |only BETS-0.2.0/BETS/man/draw.gdp_vars.Rd |only BETS-0.2.0/BETS/man/draw.iie_br.Rd |only BETS-0.2.0/BETS/man/draw.lab_mrkt.Rd |only BETS-0.2.0/BETS/man/draw.misery_index.Rd |only BETS-0.2.0/BETS/man/draw.survey.Rd |only BETS-0.2.0/BETS/man/get.data.frame.Rd | 1 BETS-0.2.0/BETS/man/get.series.bacen.Rd | 1 BETS-0.2.0/BETS/man/msg.Rd | 1 109 files changed, 718 insertions(+), 566 deletions(-)
Title: Analysis of Means
Description: Analysis of means (ANOM) as used in technometrical computing. The package takes results from multiple comparisons with the grand mean (obtained with 'multcomp', 'SimComp', 'nparcomp', or 'MCPAN') or corresponding simultaneous confidence intervals as input and produces ANOM decision charts that illustrate which group means deviate significantly from the grand mean.
Author: Philip Pallmann
Maintainer: Philip Pallmann <p.pallmann@lancaster.ac.uk>
Diff between ANOM versions 0.4.3 dated 2016-02-15 and 0.5 dated 2017-04-12
DESCRIPTION | 8 ++-- MD5 | 18 ++++----- R/ANOM.R | 103 ++++++++++++++++++++++++++++++++++++------------------ R/ANOMgen.R | 89 +++++++++++++++++++++++++++------------------- R/ANOMintern.R | 89 +++++++++++++++++++++++++++------------------- inst/CITATION | 5 ++ inst/NEWS | 7 +++ inst/doc/ANOM.pdf |binary man/ANOM.Rd | 16 ++++++-- man/ANOMgen.Rd | 14 ++++++- 10 files changed, 225 insertions(+), 124 deletions(-)