Title: R Interface to 'FishBase'
Description: A programmatic interface to <http://www.fishbase.org>, re-written
based on an accompanying 'RESTful' API. Access tables describing over 30,000
species of fish, their biology, ecology, morphology, and more. This package also
supports experimental access to <http://www.sealifebase.org> data, which contains
nearly 200,000 species records for all types of aquatic life not covered by
'FishBase.'
Author: Carl Boettiger [cre, aut],
Scott Chamberlain [aut],
Duncan Temple Lang [aut],
Peter Wainwright [aut]
Maintainer: Carl Boettiger <cboettig@ropensci.org>
Diff between rfishbase versions 2.1.1 dated 2016-07-21 and 2.1.2 dated 2017-04-19
DESCRIPTION | 12 +-- MD5 | 128 +++++++++++++++++++------------------- NAMESPACE | 2 NEWS | 7 ++ R/common_names.R | 2 R/list_fields.R | 2 R/load_taxa.R | 25 ++----- R/refs.R |only R/reproduction.R | 13 ++- R/species.R | 2 README.md | 22 ++++-- build/vignette.rds |binary data/sealifebase.rda |binary inst/doc/tutorial.R | 21 ++++-- inst/doc/tutorial.Rmd | 30 +++++++- inst/doc/tutorial.html | 35 +++++++--- man/c_code.Rd | 3 man/common_names.Rd | 3 man/common_to_sci.Rd | 3 man/country.Rd | 3 man/countrysub.Rd | 3 man/countrysubref.Rd | 3 man/diet.Rd | 3 man/distribution.Rd | 3 man/docs.Rd | 3 man/ecology.Rd | 3 man/ecosystem.Rd | 3 man/faoareas.Rd | 3 man/fecundity.Rd | 3 man/fishbase.Rd | 7 -- man/fooditems.Rd | 3 man/heartbeat.Rd | 3 man/introductions.Rd | 3 man/larvae.Rd |only man/length_freq.Rd | 3 man/length_length.Rd | 3 man/length_weight.Rd | 3 man/list_fields.Rd | 3 man/load_taxa.Rd | 3 man/maturity.Rd | 3 man/morphology.Rd | 3 man/morphometrics.Rd | 3 man/occurrence.Rd | 1 man/oxygen.Rd | 3 man/ping.Rd | 3 man/popchar.Rd | 3 man/popgrowth.Rd | 3 man/popqb.Rd | 3 man/predators.Rd | 3 man/ration.Rd | 3 man/references.Rd |only man/reproduction.Rd | 3 man/rfishbase-package.Rd | 3 man/sci_to_common.Rd | 3 man/sealifebase.Rd | 7 -- man/spawning.Rd | 3 man/species.Rd | 3 man/species_fields.Rd | 7 -- man/species_list.Rd | 1 man/species_names.Rd | 3 man/speed.Rd | 3 man/stocks.Rd | 3 man/swimming.Rd | 3 man/synonyms.Rd | 3 man/validate_names.Rd | 3 tests/testthat/test_sealifebase.R |only vignettes/tutorial.Rmd | 30 +++++++- 67 files changed, 254 insertions(+), 226 deletions(-)
Title: Regularized Autoregressive Hidden Semi Markov Model
Description: Fit Gaussian hidden Markov (or semi-Markov) models with / without autoregressive coefficients and with / without regularization. The fitting algorithm for the hidden Markov model is illustrated by Rabiner (1989) <doi:10.1109/5.18626>. The shrinkage estimation on the covariance matrices is based on the graphical lasso method by Freedman (2007) <doi:10.1093/biostatistics/kxm045>. The shrinkage estimation on the autoregressive coefficients uses the elastic net shrinkage detailed in Zou (2005) <doi:10.1111/j.1467-9868.2005.00503.x>.
Author: Zekun (Jack) Xu, Ye Liu
Maintainer: Zekun Xu <zekunxu@gmail.com>
Diff between rarhsmm versions 1.0.1 dated 2017-04-12 and 1.0.2 dated 2017-04-19
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++++------- NAMESPACE | 2 ++ R/data.R | 14 +++++++++++--- R/hmm.predict.R |only R/hsmm.predict.R |only R/package.R | 4 ++-- data/finance.RData |binary man/finance.Rd | 15 ++++++++++++--- man/hmm.predict.Rd |only man/hsmm.predict.Rd |only man/package-rarhsmm.Rd | 4 ++-- 12 files changed, 44 insertions(+), 21 deletions(-)
Title: Geometric Morphometric Tools for Paleobiology
Description: Fill missing symmetrical data with mirroring, calculate Procrustes alignments with or without scaling, and compute standard or vector correlation and covariance matrices (congruence coefficients) of 3D landmarks. Tolerates missing data for all analyses.
Author: Tim Lucas, Anjali Goswami
Maintainer: Tim Lucas <timcdlucas@gmail.com>
Diff between paleomorph versions 0.1.3 dated 2016-09-29 and 0.1.4 dated 2017-04-19
DESCRIPTION | 10 MD5 | 22 +- R/cvm.R | 472 +++++++++++++++++++++++------------------------ man/countMissing.Rd | 1 man/covar.Rd | 1 man/dotcorr.Rd | 1 man/dotcvm.Rd | 7 man/mirrorfill.Rd | 1 man/mirrorfill1.Rd | 1 man/plotSpecimens.Rd | 1 man/procrustes.Rd | 1 tests/testthat/testcvm.R | 312 ++++++++++++++++--------------- 12 files changed, 423 insertions(+), 407 deletions(-)
More information about DescToolsAddIns at CRAN
Permanent link
Title: Numerical Estimation of Sparse Hessians
Description: Estimates Hessian of a scalar-valued function, and returns it
in a sparse Matrix format. The sparsity pattern must be known in advance. The
algorithm is especially efficient for hierarchical models with a large number of
heterogeneous units.
Author: Michael Braun [aut, cre, cph]
Maintainer: Michael Braun <braunm@smu.edu>
Diff between sparseHessianFD versions 0.3.2 dated 2016-12-26 and 0.3.3 dated 2017-04-19
DESCRIPTION | 10 +++---- MD5 | 49 +++++++++++++++++------------------ NAMESPACE | 2 - NEWS | 12 +++++++- NEWS.md | 7 +++++ R/sparseHessianFD.R | 2 - build/vignette.rds |binary inst/doc/replication.R | 6 +--- inst/doc/sparseHessianFD.R | 18 ++++++------ inst/doc/sparseHessianFD.Rnw | 57 +++++++++++++++++------------------------ inst/doc/sparseHessianFD.pdf |binary man/Coord.to.Pointers.Rd | 1 man/Matrix.to.Coord.Rd | 1 man/Matrix.to.Pointers.Rd | 1 man/binary-data.Rd | 7 ++--- man/binary.Rd | 1 man/coloring.Rd | 1 man/deprecated.Rd | 7 ++--- man/get_colors.Rd | 1 man/sparseHessianFD-package.Rd | 1 man/sparseHessianFD.Rd | 3 +- man/subst.Rd | 1 src/init.c |only vignettes/replication.R | 6 +--- vignettes/sparseHessianFD.Rnw | 57 +++++++++++++++++------------------------ vignettes/sparseHessianFD.bib | 23 +++++++++------- 26 files changed, 133 insertions(+), 141 deletions(-)
More information about sparseHessianFD at CRAN
Permanent link
Title: Rarefaction Tool Kit
Description: Rarefy data, calculate diversity and plot the results.
Author: Paul Saary, Falk Hildebrand
Maintainer: Paul Saary <rtk@paulsaary.de>
Diff between rtk versions 0.2.5 dated 2017-03-22 and 0.2.5.1 dated 2017-04-19
DESCRIPTION | 8 +- MD5 | 20 ++--- build/partial.rdb |binary src/IO.cpp | 10 +- src/IO.h | 4 - src/Makevars.win | 6 + src/Matrix.cpp | 181 +++++++++++++++++++++++++++++++++++++++++++--------- src/Matrix.h | 7 ++ src/RcppExports.cpp | 4 - src/Rwrapper.cpp | 6 - src/options.h | 20 +++-- 11 files changed, 201 insertions(+), 65 deletions(-)
Title: Retrieves Altmerics Data for Any Published Paper from
'Altmetric.com'
Description: Provides a programmatic interface to the citation information and alternate metrics provided by 'Altmetric'. Data from Altmetric allows researchers to immediately track the impact of their published work, without having to wait for citations. This allows for faster engagement with the audience interested in your work. For more information, visit <https://www.altmetric.com/>.
Author: Karthik Ram [aut, cre]
Maintainer: Karthik Ram <karthik.ram@gmail.com>
Diff between rAltmetric versions 0.6 dated 2014-12-04 and 0.7.0 dated 2017-04-19
rAltmetric-0.6/rAltmetric/NEWS |only rAltmetric-0.6/rAltmetric/R/metrics_methods.R |only rAltmetric-0.6/rAltmetric/inst/doc/README.pdf |only rAltmetric-0.6/rAltmetric/man/plot.altmetric.Rd |only rAltmetric-0.6/rAltmetric/man/return_provider.Rd |only rAltmetric-0.6/rAltmetric/tests/test-rAltmetric.R |only rAltmetric-0.6/rAltmetric/tests/testthat/test-rAltmetric.R |only rAltmetric-0.7.0/rAltmetric/DESCRIPTION | 33 - rAltmetric-0.7.0/rAltmetric/LICENSE |only rAltmetric-0.7.0/rAltmetric/MD5 | 31 - rAltmetric-0.7.0/rAltmetric/NAMESPACE | 18 rAltmetric-0.7.0/rAltmetric/NEWS.md |only rAltmetric-0.7.0/rAltmetric/R/metrics-methods.R |only rAltmetric-0.7.0/rAltmetric/R/metrics.R | 306 ++++------- rAltmetric-0.7.0/rAltmetric/README.md | 237 ++++---- rAltmetric-0.7.0/rAltmetric/build |only rAltmetric-0.7.0/rAltmetric/inst/doc/intro-to-altmetric.R |only rAltmetric-0.7.0/rAltmetric/inst/doc/intro-to-altmetric.Rmd |only rAltmetric-0.7.0/rAltmetric/inst/doc/intro-to-altmetric.html |only rAltmetric-0.7.0/rAltmetric/man/altmetric_data.Rd | 18 rAltmetric-0.7.0/rAltmetric/man/altmetrics.Rd | 43 - rAltmetric-0.7.0/rAltmetric/man/print.altmetric.Rd | 4 rAltmetric-0.7.0/rAltmetric/tests/testthat.R |only rAltmetric-0.7.0/rAltmetric/tests/testthat/tests.R |only rAltmetric-0.7.0/rAltmetric/vignettes |only 25 files changed, 308 insertions(+), 382 deletions(-)
Title: Conway-Maxwell Poisson (COM-Poisson) Regression
Description: Fit Conway-Maxwell Poisson (COM-Poisson or CMP) regression models
to count data (Sellers & Shmueli, 2010) <doi:10.1214/09-AOAS306>. The
package provides functions for model estimation, dispersion testing, and
diagnostics. Zero-inflated CMP regression (Raim & Sellers, 2016)
<doi:10.1016/j.csda.2016.01.007> is also supported.
Author: Kimberly Sellers <kfs7@georgetown.edu>
Thomas Lotze <thomas.lotze@thomaslotze.com>
Andrew Raim <andrew.raim@gmail.com>
Maintainer: Andrew Raim <andrew.raim@gmail.com>
Diff between COMPoissonReg versions 0.3.5 dated 2015-07-10 and 0.4.0 dated 2017-04-19
COMPoissonReg-0.3.5/COMPoissonReg/R/CMP.MSE.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/CMPDeviance.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/CMPLeverage.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/CMPParamBoot.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/CMPStdErrors.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/ComputeBetasAndNuHat.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/ComputeOptimalLogLi.GivenNuHat.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/InfoMatrix.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/InfoMatrix.beta.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/InfoMatrix.betanu.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/InfoMatrix.nu.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/LRT.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/chisq.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/cmp.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/computez.lambdaest.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/computez.prodj.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/computez.prodj2.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/computez.prodjlogj.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/computez.prodlogj.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/computez.prodlogj2.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/constantCMPfitsandresids.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/leverage.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/makeCMPdata.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/nu.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/parametric_bootstrap.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/pval.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/rcmp.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/sdev.R |only COMPoissonReg-0.3.5/COMPoissonReg/R/weights.R |only COMPoissonReg-0.3.5/COMPoissonReg/README.md |only COMPoissonReg-0.3.5/COMPoissonReg/man/CMP.MSE.Rd |only COMPoissonReg-0.3.5/COMPoissonReg/man/CMPDeviance.Rd |only COMPoissonReg-0.3.5/COMPoissonReg/man/CMPLeverage.Rd |only COMPoissonReg-0.3.5/COMPoissonReg/man/CMPParamBoot.Rd |only COMPoissonReg-0.3.5/COMPoissonReg/man/CMPStdErrors.Rd |only COMPoissonReg-0.3.5/COMPoissonReg/man/ComputeBetasAndNuHat.Rd |only COMPoissonReg-0.3.5/COMPoissonReg/man/LRT.Rd |only COMPoissonReg-0.3.5/COMPoissonReg/man/chisq.Rd |only COMPoissonReg-0.3.5/COMPoissonReg/man/cmp.Rd |only COMPoissonReg-0.3.5/COMPoissonReg/man/constantCMPfitsandresids.Rd |only COMPoissonReg-0.3.5/COMPoissonReg/man/makeCMPdata.Rd |only COMPoissonReg-0.3.5/COMPoissonReg/man/pval.Rd |only COMPoissonReg-0.4.0/COMPoissonReg/DESCRIPTION | 21 - COMPoissonReg-0.4.0/COMPoissonReg/MD5 | 79 +--- COMPoissonReg-0.4.0/COMPoissonReg/NAMESPACE | 43 ++ COMPoissonReg-0.4.0/COMPoissonReg/R/S3methods.R |only COMPoissonReg-0.4.0/COMPoissonReg/R/cmp-reg.R |only COMPoissonReg-0.4.0/COMPoissonReg/R/computez.R | 74 +++ COMPoissonReg-0.4.0/COMPoissonReg/R/dist.R |only COMPoissonReg-0.4.0/COMPoissonReg/R/fim.R |only COMPoissonReg-0.4.0/COMPoissonReg/R/glm.R |only COMPoissonReg-0.4.0/COMPoissonReg/R/mle.R |only COMPoissonReg-0.4.0/COMPoissonReg/R/rqres.R |only COMPoissonReg-0.4.0/COMPoissonReg/R/util.R |only COMPoissonReg-0.4.0/COMPoissonReg/R/zicmp-reg.R |only COMPoissonReg-0.4.0/COMPoissonReg/data/couple.rda |only COMPoissonReg-0.4.0/COMPoissonReg/inst |only COMPoissonReg-0.4.0/COMPoissonReg/man/COMPoissonReg-package.Rd | 195 ++++++---- COMPoissonReg-0.4.0/COMPoissonReg/man/cmp-dist.Rd |only COMPoissonReg-0.4.0/COMPoissonReg/man/couple.rda.Rd |only COMPoissonReg-0.4.0/COMPoissonReg/man/equitest.Rd |only COMPoissonReg-0.4.0/COMPoissonReg/man/freight.rda.Rd | 10 COMPoissonReg-0.4.0/COMPoissonReg/man/glm-cmp.Rd |only COMPoissonReg-0.4.0/COMPoissonReg/man/nu.Rd | 4 COMPoissonReg-0.4.0/COMPoissonReg/man/parametric_bootstrap.Rd | 9 COMPoissonReg-0.4.0/COMPoissonReg/man/sdev.Rd | 5 COMPoissonReg-0.4.0/COMPoissonReg/man/zicmp-dist.Rd |only 67 files changed, 276 insertions(+), 164 deletions(-)
Title: Artificial Counterfactual Package
Description: Set of functions to analyse and estimate Artificial Counterfactual models from Carvalho, Masini and Medeiros (2016) <DOI:10.2139/ssrn.2823687>.
Author: Yuri R. Fonseca [aut],
Ricardo Masini [aut],
Marcelo C. Medeiros [aut],
Gabriel F. R. Vasconcelos [aut, cre]
Maintainer: Gabriel F. R. Vasconcelos <gabrielrvsc@yahoo.com.br>
Diff between ArCo versions 0.1-1 dated 2017-04-04 and 0.1-2 dated 2017-04-19
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/fitArCo.R | 14 +++++++++++++- 3 files changed, 18 insertions(+), 6 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-15 0.3
2013-07-05 0.2
2013-04-29 0.1
Title: Download or Upload 'Socrata' Data Sets
Description: Provides easier interaction with
Socrata open data portals <http://dev.socrata.com>.
Users can provide a 'Socrata' data set resource URL,
or a 'Socrata' Open Data API (SoDA) web query,
or a 'Socrata' "human-friendly" URL,
returns an R data frame. Converts dates to 'POSIX'
format and manages throttling by 'Socrata'.
Users can upload data to Socrata portals directly
from R.
Author: Hugh Devlin, Ph. D., Tom Schenk, Jr., and John Malc
Maintainer: "Tom Schenk Jr." <developers@cityofchicago.org>
Diff between RSocrata versions 1.7.1-24 dated 2016-11-16 and 1.7.2-12 dated 2017-04-19
DESCRIPTION | 14 MD5 | 24 - NAMESPACE | 38 - R/RSocrata.R | 913 +++++++++++++++++++++++----------------------- README.md | 40 +- man/fieldName.Rd | 53 +- man/isFourByFour.Rd | 47 +- man/ls.socrata.Rd | 1 man/posixify.Rd | 41 +- man/read.socrata.Rd | 105 ++--- man/validateUrl.Rd | 57 +- man/write.socrata.Rd | 89 ++-- tests/testthat/test-all.R | 52 ++ 13 files changed, 768 insertions(+), 706 deletions(-)
Title: Infrastructure to Assemble Multi-Panel Figures (from Grobs)
Description: Tools to create a layout for figures made of multiple panels, and
to fill the panels with base, lattice and ggplot2 plots, grobs, and PNG,
JPEG, SVG and TIFF images.
Author: Johannes Graumann [cre, aut],
Richard Cotton [ctb]
Maintainer: Johannes Graumann <jog2030@qatar-med.cornell.edu>
Diff between multipanelfigure versions 0.8.3 dated 2016-07-06 and 0.9.0 dated 2017-04-19
multipanelfigure-0.8.3/multipanelfigure/R/add_panel.R |only multipanelfigure-0.8.3/multipanelfigure/man/add_panel.Rd |only multipanelfigure-0.9.0/multipanelfigure/DESCRIPTION | 29 multipanelfigure-0.9.0/multipanelfigure/MD5 | 56 + multipanelfigure-0.9.0/multipanelfigure/NAMESPACE | 13 multipanelfigure-0.9.0/multipanelfigure/NEWS |only multipanelfigure-0.9.0/multipanelfigure/R/assertions.R | 39 - multipanelfigure-0.9.0/multipanelfigure/R/dataset-docs.R | 12 multipanelfigure-0.9.0/multipanelfigure/R/fill_panel.R |only multipanelfigure-0.9.0/multipanelfigure/R/grob_dimensions.R | 64 + multipanelfigure-0.9.0/multipanelfigure/R/methods.R | 86 ++ multipanelfigure-0.9.0/multipanelfigure/R/multi_panel_figure.R | 326 ++++++---- multipanelfigure-0.9.0/multipanelfigure/R/resize-panels.R |only multipanelfigure-0.9.0/multipanelfigure/R/save_multi_panel_figure.R |only multipanelfigure-0.9.0/multipanelfigure/R/zzz.R |only multipanelfigure-0.9.0/multipanelfigure/README.md | 24 multipanelfigure-0.9.0/multipanelfigure/build |only multipanelfigure-0.9.0/multipanelfigure/inst/doc |only multipanelfigure-0.9.0/multipanelfigure/man/assert_is_multipanelfigure.Rd | 1 multipanelfigure-0.9.0/multipanelfigure/man/billing2016_suppfig4e.Rd | 1 multipanelfigure-0.9.0/multipanelfigure/man/billing2016_suppfig4g.Rd | 1 multipanelfigure-0.9.0/multipanelfigure/man/capture_base_plot.Rd | 1 multipanelfigure-0.9.0/multipanelfigure/man/fill_panel.Rd |only multipanelfigure-0.9.0/multipanelfigure/man/grapes-greater-than-grapes.Rd | 1 multipanelfigure-0.9.0/multipanelfigure/man/grapes-less-than-greater-than-grapes.Rd | 1 multipanelfigure-0.9.0/multipanelfigure/man/grob_dimensions.Rd | 33 - multipanelfigure-0.9.0/multipanelfigure/man/images.Rd | 13 multipanelfigure-0.9.0/multipanelfigure/man/multi_panel_figure.Rd | 147 ++-- multipanelfigure-0.9.0/multipanelfigure/man/multipanelfigure-deprecated.Rd | 1 multipanelfigure-0.9.0/multipanelfigure/man/print.multipanelfigure.Rd | 3 multipanelfigure-0.9.0/multipanelfigure/man/save_multi_panel_figure.Rd |only multipanelfigure-0.9.0/multipanelfigure/vignettes |only 32 files changed, 539 insertions(+), 313 deletions(-)
More information about multipanelfigure at CRAN
Permanent link
Title: Some Additional Multiple Imputation Functions, Especially for
'mice'
Description:
Contains some auxiliary functions for multiple
imputation which complements existing functionality
in R.
In addition to some utility functions, main features
include plausible value imputation, multilevel
imputation functions, imputation using partial least
squares (PLS) for high dimensional predictors, nested
multiple imputation.
Author:
Alexander Robitzsch [aut, cre], Simon Grund [aut],
Thorsten Henke [aut]
Maintainer:
Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between miceadds versions 2.3-0 dated 2017-02-21 and 2.4-12 dated 2017-04-19
DESCRIPTION | 10 MD5 | 20 - NAMESPACE | 2 R/Rfunction_include_argument_values.R |only R/mi.anova.R | 44 +- R/mice.impute.2l.latentgroupmean.MCMC.R | 18 - R/mice.impute.2l.pls2.R | 558 ++++++++++++++++++++++++++++++- R/mice.impute.2l.pls2_aux.R |only inst/NEWS | 15 man/mice.impute.2l.latentgroupmean.ML.Rd | 4 man/mice.impute.pls.Rd | 14 man/miceadds-defunct.Rd | 2 12 files changed, 635 insertions(+), 52 deletions(-)
Title: Regression Models for Interval Censored Data
Description: Regression models for interval censored data. Currently supports
Cox-PH, proportional odds, and accelerated failure time models. Allows for
semi and fully parametric models (parametric only for accelerated failure
time models) and Bayesian parametric models. Includes functions for easy visual
diagnostics of model fits and imputation of censored data.
Author: Clifford Anderson-Bergman
Maintainer: Clifford Anderson-Bergman <pistacliffcho@gmail.com>
Diff between icenReg versions 2.0.0 dated 2017-03-18 and 2.0.1 dated 2017-04-19
DESCRIPTION | 17 MD5 | 65 ++- NAMESPACE | 4 NEWS | 10 R/RcppExports.R | 10 R/ic_bayes.R | 2 R/ic_np.R | 17 R/internal_utilities.R | 52 ++- R/plottingFunctions.R | 20 - R/referenceClasses.R | 81 ++++ R/user_utilities.R | 192 ++++++++++- inst/CITATION |only inst/doc/icenReg.pdf |binary man/getFitEsts.Rd | 5 man/ic_bayes.Rd | 2 man/ic_np.Rd | 18 - man/sampleSurv.Rd |only man/survCIs.Rd |only src/RcppExports.cpp | 48 ++ src/icenReg.cpp | 15 src/icenReg_files/ic_par.cpp | 2 src/icenReg_files/regressionTransforms.cpp | 1 src/icenReg_files/regressionTransforms_2.cpp |only src/icenReg_files/regressionTransforms_2.h |only src/registeringRoutines.c | 26 - vignettes/inProgress/StatisticalBackground-003.pdf |only vignettes/inProgress/StatisticalBackground-004.pdf |only vignettes/inProgress/StatisticalBackground-005.pdf |only vignettes/inProgress/StatisticalBackground-006.pdf |only vignettes/inProgress/StatisticalBackground-007.pdf |only vignettes/inProgress/StatisticalBackground-008.pdf |only vignettes/inProgress/StatisticalBackground-009.pdf |only vignettes/inProgress/StatisticalBackground-010.pdf |only vignettes/inProgress/StatisticalBackground-concordance.tex | 7 vignettes/inProgress/StatisticalBackground.Rnw | 144 +++++++- vignettes/inProgress/StatisticalBackground.log | 225 +++++++------ vignettes/inProgress/StatisticalBackground.pdf |binary vignettes/inProgress/StatisticalBackground.synctex.gz |binary vignettes/inProgress/StatisticalBackground.tex | 102 ++++- vignettes/inProgress/StatisticalBackground.toc | 12 40 files changed, 853 insertions(+), 224 deletions(-)
Title: Gaussian Graphs Models Selection
Description: Graph estimation in Gaussian Graphical Models. The main functions return the adjacency matrix of an undirected graph estimated from a data matrix.
Author: Annie Bouvier, Christophe Giraud, Sylvie Huet, Verzelen N.
Maintainer: Annie Bouvier <Annie.Bouvier@inra.fr>
Diff between GGMselect versions 0.1-11 dated 2016-11-23 and 0.1-12 dated 2017-04-19
GGMselect-0.1-11/GGMselect/tests/execution |only GGMselect-0.1-12/GGMselect/DESCRIPTION | 8 +- GGMselect-0.1-12/GGMselect/MD5 | 54 +++++++++--------- GGMselect-0.1-12/GGMselect/NAMESPACE | 10 ++- GGMselect-0.1-12/GGMselect/NEWS | 8 ++ GGMselect-0.1-12/GGMselect/inst/doc/Notice.Rnw | 12 ++-- GGMselect-0.1-12/GGMselect/inst/doc/Notice.pdf |binary GGMselect-0.1-12/GGMselect/man/GGMselect-package.Rd | 2 GGMselect-0.1-12/GGMselect/src/QESW.c | 13 +++- GGMselect-0.1-12/GGMselect/src/boucle.f | 9 ++- GGMselect-0.1-12/GGMselect/src/critQE.c | 23 +++++-- GGMselect-0.1-12/GGMselect/src/dclfunc.h |only GGMselect-0.1-12/GGMselect/src/init.c |only GGMselect-0.1-12/GGMselect/src/loop.c | 19 +++++- GGMselect-0.1-12/GGMselect/src/scr.c | 16 +++-- GGMselect-0.1-12/GGMselect/tests/bsch.Rout.save | 4 - GGMselect-0.1-12/GGMselect/tests/penInf.Rout.save | 4 - GGMselect-0.1-12/GGMselect/tests/sh9.2012.Rout.save | 4 - GGMselect-0.1-12/GGMselect/tests/shPUR.Rout.save | 4 - GGMselect-0.1-12/GGMselect/tests/test1Fast.Rout.save | 4 - GGMselect-0.1-12/GGMselect/tests/test1QE.Rout.save | 4 - GGMselect-0.1-12/GGMselect/tests/test2Fast.Rout.save | 4 - GGMselect-0.1-12/GGMselect/tests/test2QE.Rout.save | 4 - GGMselect-0.1-12/GGMselect/tests/test3Fast.Rout.save | 4 - GGMselect-0.1-12/GGMselect/tests/test3QE.Rout.save | 4 - GGMselect-0.1-12/GGMselect/tests/test5Fast.Rout.save | 4 - GGMselect-0.1-12/GGMselect/tests/test7Fast.Rout.save | 4 - GGMselect-0.1-12/GGMselect/tests/testMyFam.Rout.save | 4 - GGMselect-0.1-12/GGMselect/vignettes/Notice.Rnw | 12 ++-- GGMselect-0.1-12/GGMselect/vignettes/acmtrans-ims.bst |only 30 files changed, 147 insertions(+), 91 deletions(-)
Title: Rating Scale Reduction Procedure
Description: Describes a new procedure of reducing items in a rating scale called Rating Scale Reduction (RSR). The new stop criterion in RSR procedure is added (stop global max).
Author: Waldemar W. Koczkodaj, Alicja Wolny-Dominiak
Maintainer: Alicja Wolny-Dominiak <alicja.wolny-dominiak@ue.katowice.pl>
Diff between RatingScaleReduction versions 1.0 dated 2017-02-11 and 1.1 dated 2017-04-19
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 2 +- R/CheckAttr4Inclusion.R | 25 +++++++++++++++++++------ R/rsr.R | 30 ++++++++++++++++++++---------- R/totalAuc.R | 2 +- man/CheckAttr4Inclusion.Rd | 21 +++++++++++++-------- man/RatingScaleReduction-package.Rd | 29 +++++++++++++++++++++++++---- man/rsr.Rd | 25 +++++++++++++++++-------- man/startAuc.Rd | 13 +++++++++---- man/totalAuc.Rd | 20 ++++++++++++++++---- 11 files changed, 136 insertions(+), 61 deletions(-)
More information about RatingScaleReduction at CRAN
Permanent link
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for working with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Daniel C. Reuman [ctb],
Helen Wearing [ctb],
Simon N. Wood [ctb],
Sebastian Funk [ctb],
Steven G. Johnson [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 1.11 dated 2017-03-01 and 1.12 dated 2017-04-19
DESCRIPTION | 8 MD5 | 36 - R/mif.R | 1206 +++++++++++++++++++++++++-------------------------- R/mif2.R | 874 ++++++++++++++++++------------------ R/pfilter.R | 736 +++++++++++++++---------------- build/partial.rdb |binary data/LondonYorke.rda |binary data/ewcitmeas.rda |binary data/ewmeas.rda |binary inst/NEWS | 27 + inst/NEWS.Rd | 13 inst/include/pomp.h | 43 + src/init.c | 3 src/mif2.c | 4 src/ou2.c | 64 -- src/pomp.h | 43 + src/probe.c | 20 src/resample.c | 8 src/ssa.c | 3 19 files changed, 1540 insertions(+), 1548 deletions(-)
Title: Genetic Analysis Package
Description: It is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it
contains functions for sample size calculations of both
population-based and family-based designs, probability of
familial disease aggregation, kinship calculation, statistics
in linkage analysis, and association analysis involving genetic
markers including haplotype analysis with or without environmental
covariates.
Author: Jing Hua Zhao and colleagues with inputs from Kurt Hornik and
Brian Ripley
Maintainer: Jing Hua Zhao <jinghua.zhao@mrc-epid.cam.ac.uk>
Diff between gap versions 1.1-16 dated 2015-06-06 and 1.1-17 dated 2017-04-19
gap-1.1-16/gap/src/gcontrol.c |only gap-1.1-16/gap/src/gif.c |only gap-1.1-16/gap/src/hap.c |only gap-1.1-16/gap/src/makeped.c |only gap-1.1-16/gap/src/pgc.c |only gap-1.1-17/gap/ChangeLog | 12 + gap-1.1-17/gap/DESCRIPTION | 10 gap-1.1-17/gap/MD5 | 93 +++++--- gap-1.1-17/gap/NAMESPACE | 10 gap-1.1-17/gap/R/gcontrol.R | 2 gap-1.1-17/gap/R/gif.R | 2 gap-1.1-17/gap/R/hap.R | 2 gap-1.1-17/gap/R/makeped.R | 2 gap-1.1-17/gap/R/mia.R | 2 gap-1.1-17/gap/R/pgc.R | 2 gap-1.1-17/gap/R/utils.R | 110 +++++++--- gap-1.1-17/gap/build/vignette.rds |binary gap-1.1-17/gap/inst/CITATION | 4 gap-1.1-17/gap/inst/doc/gap.pdf |binary gap-1.1-17/gap/inst/doc/h2.Rnw | 4 gap-1.1-17/gap/inst/doc/h2.pdf |binary gap-1.1-17/gap/inst/doc/jss.pdf |binary gap-1.1-17/gap/inst/doc/pedtodot.pdf |binary gap-1.1-17/gap/inst/doc/rnews.pdf |binary gap-1.1-17/gap/inst/tests/R |only gap-1.1-17/gap/inst/tests/README.txt | 2 gap-1.1-17/gap/inst/tests/h2 |only gap-1.1-17/gap/inst/tests/no | 2 gap-1.1-17/gap/inst/tests/references.txt | 18 + gap-1.1-17/gap/man/gap-package.Rd | 2 gap-1.1-17/gap/man/hap.Rd | 2 gap-1.1-17/gap/man/mia.Rd | 2 gap-1.1-17/gap/src/gcontrol_c.c |only gap-1.1-17/gap/src/gif_c.c |only gap-1.1-17/gap/src/hap_c.c |only gap-1.1-17/gap/src/makeped_c.c |only gap-1.1-17/gap/src/mia.c | 2 gap-1.1-17/gap/src/package_native_routine_registration_skeleton.c |only gap-1.1-17/gap/src/pfc.sim.f | 2 gap-1.1-17/gap/src/pgc_c.c |only gap-1.1-17/gap/vignettes/figures/4w.pdf |binary gap-1.1-17/gap/vignettes/figures/ESplot.pdf |binary gap-1.1-17/gap/vignettes/figures/asplot.pdf |binary gap-1.1-17/gap/vignettes/figures/lukas.pdf |binary gap-1.1-17/gap/vignettes/figures/mhtplot.png |binary gap-1.1-17/gap/vignettes/figures/qqunif.pdf |binary gap-1.1-17/gap/vignettes/h2.Rnw | 4 47 files changed, 201 insertions(+), 90 deletions(-)
Title: Bayesian Applied Regression Modeling via Stan
Description: Estimates previously compiled regression models using the 'rstan' package,
which provides the R interface to the Stan C++ library for Bayesian estimation.
Users specify models via the customary R syntax with a formula and data.frame
plus some additional arguments for priors.
Author: Jonah Gabry [aut],
Imad Ali [ctb],
Trustees of Columbia University [cph],
R Core Deveopment Team [cph] (R/stan_aov.R),
Douglas Bates [cph] (R/pp_data.R),
Martin Maechler [cph] (R/pp_data.R),
Ben Bolker [cph] (R/pp_data.R),
Steve Walker [cph] (R/pp_data.R),
Brian Ripley [cph] (R/stan_aov.R, R/stan_polr.R),
William Venables [cph] (R/stan_polr.R),
Ben Goodrich [cre, aut]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between rstanarm versions 2.14.1 dated 2017-01-17 and 2.15.2 dated 2017-04-19
rstanarm-2.14.1/rstanarm/man/posterior_linpred.Rd |only rstanarm-2.15.2/rstanarm/DESCRIPTION | 31 rstanarm-2.15.2/rstanarm/MD5 | 233 +- rstanarm-2.15.2/rstanarm/NAMESPACE | 18 rstanarm-2.15.2/rstanarm/R/adapt_delta.R | 2 rstanarm-2.15.2/rstanarm/R/as.matrix.stanreg.R | 2 rstanarm-2.15.2/rstanarm/R/data_block.R | 6 rstanarm-2.15.2/rstanarm/R/datasets.R | 2 rstanarm-2.15.2/rstanarm/R/example_model.R | 2 rstanarm-2.15.2/rstanarm/R/gamm4_to_glmer.R | 2 rstanarm-2.15.2/rstanarm/R/log_lik.R | 24 rstanarm-2.15.2/rstanarm/R/loo-prediction.R |only rstanarm-2.15.2/rstanarm/R/loo.R | 87 rstanarm-2.15.2/rstanarm/R/misc.R | 87 rstanarm-2.15.2/rstanarm/R/neg_binomial_2.R | 2 rstanarm-2.15.2/rstanarm/R/plots.R | 388 +-- rstanarm-2.15.2/rstanarm/R/posterior_interval.R | 2 rstanarm-2.15.2/rstanarm/R/posterior_linpred.R | 30 rstanarm-2.15.2/rstanarm/R/posterior_predict.R | 6 rstanarm-2.15.2/rstanarm/R/pp_check.R | 181 - rstanarm-2.15.2/rstanarm/R/pp_data.R | 2 rstanarm-2.15.2/rstanarm/R/pp_validate.R | 2 rstanarm-2.15.2/rstanarm/R/predict.R | 2 rstanarm-2.15.2/rstanarm/R/predictive_error.R | 2 rstanarm-2.15.2/rstanarm/R/predictive_interval.R | 2 rstanarm-2.15.2/rstanarm/R/print-and-summary.R | 74 rstanarm-2.15.2/rstanarm/R/prior_summary.R | 34 rstanarm-2.15.2/rstanarm/R/priors.R | 222 +- rstanarm-2.15.2/rstanarm/R/rstanarm-package.R | 158 - rstanarm-2.15.2/rstanarm/R/shinystan.R | 2 rstanarm-2.15.2/rstanarm/R/stan_aov.R | 9 rstanarm-2.15.2/rstanarm/R/stan_betareg.R | 9 rstanarm-2.15.2/rstanarm/R/stan_betareg.fit.R | 130 - rstanarm-2.15.2/rstanarm/R/stan_biglm.R | 6 rstanarm-2.15.2/rstanarm/R/stan_biglm.fit.R | 2 rstanarm-2.15.2/rstanarm/R/stan_gamm4.R | 13 rstanarm-2.15.2/rstanarm/R/stan_glm.R | 27 rstanarm-2.15.2/rstanarm/R/stan_glm.fit.R | 89 rstanarm-2.15.2/rstanarm/R/stan_glmer.R | 14 rstanarm-2.15.2/rstanarm/R/stan_lm.R | 6 rstanarm-2.15.2/rstanarm/R/stan_lm.fit.R | 2 rstanarm-2.15.2/rstanarm/R/stan_polr.R | 49 rstanarm-2.15.2/rstanarm/R/stan_polr.fit.R | 12 rstanarm-2.15.2/rstanarm/R/stanmodels.R | 2 rstanarm-2.15.2/rstanarm/R/stanreg-methods.R | 2 rstanarm-2.15.2/rstanarm/R/stanreg-objects.R | 20 rstanarm-2.15.2/rstanarm/R/stanreg.R | 11 rstanarm-2.15.2/rstanarm/R/zzz.R | 2 rstanarm-2.15.2/rstanarm/build/vignette.rds |binary rstanarm-2.15.2/rstanarm/exec/bernoulli.stan | 10 rstanarm-2.15.2/rstanarm/exec/binomial.stan | 8 rstanarm-2.15.2/rstanarm/exec/continuous.stan | 26 rstanarm-2.15.2/rstanarm/exec/count.stan | 4 rstanarm-2.15.2/rstanarm/inst/NEWS | 19 rstanarm-2.15.2/rstanarm/inst/chunks/Columbia_copyright.stan | 2 rstanarm-2.15.2/rstanarm/inst/chunks/parameters_betareg.stan | 2 rstanarm-2.15.2/rstanarm/inst/doc/aov.html | 32 rstanarm-2.15.2/rstanarm/inst/doc/betareg.R | 1 rstanarm-2.15.2/rstanarm/inst/doc/betareg.Rmd | 8 rstanarm-2.15.2/rstanarm/inst/doc/betareg.html | 37 rstanarm-2.15.2/rstanarm/inst/doc/binomial.R | 33 rstanarm-2.15.2/rstanarm/inst/doc/binomial.Rmd | 33 rstanarm-2.15.2/rstanarm/inst/doc/binomial.html | 65 rstanarm-2.15.2/rstanarm/inst/doc/continuous.html | 72 rstanarm-2.15.2/rstanarm/inst/doc/count.R | 13 rstanarm-2.15.2/rstanarm/inst/doc/count.Rmd | 13 rstanarm-2.15.2/rstanarm/inst/doc/count.html | 25 rstanarm-2.15.2/rstanarm/inst/doc/glmer.html | 6 rstanarm-2.15.2/rstanarm/inst/doc/lm.Rmd | 6 rstanarm-2.15.2/rstanarm/inst/doc/lm.html | 55 rstanarm-2.15.2/rstanarm/inst/doc/polr.html | 56 rstanarm-2.15.2/rstanarm/inst/doc/pooling.R | 15 rstanarm-2.15.2/rstanarm/inst/doc/pooling.Rmd | 15 rstanarm-2.15.2/rstanarm/inst/doc/pooling.html | 194 - rstanarm-2.15.2/rstanarm/inst/doc/priors.R |only rstanarm-2.15.2/rstanarm/inst/doc/priors.Rmd |only rstanarm-2.15.2/rstanarm/inst/doc/priors.html |only rstanarm-2.15.2/rstanarm/inst/doc/rstanarm.Rmd | 2 rstanarm-2.15.2/rstanarm/inst/doc/rstanarm.html | 86 rstanarm-2.15.2/rstanarm/man/loo.stanreg.Rd | 19 rstanarm-2.15.2/rstanarm/man/loo_predict.stanreg.Rd |only rstanarm-2.15.2/rstanarm/man/pairs.stanreg.Rd | 148 - rstanarm-2.15.2/rstanarm/man/posterior_linpred.stanreg.Rd |only rstanarm-2.15.2/rstanarm/man/pp_check.stanreg.Rd | 27 rstanarm-2.15.2/rstanarm/man/prior_summary.stanreg.Rd | 25 rstanarm-2.15.2/rstanarm/man/priors.Rd | 151 - rstanarm-2.15.2/rstanarm/man/rstanarm-package.Rd | 118 - rstanarm-2.15.2/rstanarm/man/stan_betareg.Rd | 40 rstanarm-2.15.2/rstanarm/man/stan_biglm.Rd | 4 rstanarm-2.15.2/rstanarm/man/stan_gamm4.Rd | 39 rstanarm-2.15.2/rstanarm/man/stan_glm.Rd | 55 rstanarm-2.15.2/rstanarm/man/stan_glmer.Rd | 38 rstanarm-2.15.2/rstanarm/man/stan_lm.Rd | 8 rstanarm-2.15.2/rstanarm/man/stan_polr.Rd | 17 rstanarm-2.15.2/rstanarm/man/stanreg-objects.Rd | 17 rstanarm-2.15.2/rstanarm/src/include/models.hpp | 1037 ++++++++-- rstanarm-2.15.2/rstanarm/src/init.cpp |only rstanarm-2.15.2/rstanarm/tests/testthat/helpers |only rstanarm-2.15.2/rstanarm/tests/testthat/test_loo.R | 140 - rstanarm-2.15.2/rstanarm/tests/testthat/test_methods.R | 96 rstanarm-2.15.2/rstanarm/tests/testthat/test_misc.R | 49 rstanarm-2.15.2/rstanarm/tests/testthat/test_plots.R | 14 rstanarm-2.15.2/rstanarm/tests/testthat/test_posterior_predict.R | 279 -- rstanarm-2.15.2/rstanarm/tests/testthat/test_pp_check.R | 79 rstanarm-2.15.2/rstanarm/tests/testthat/test_pp_validate.R | 2 rstanarm-2.15.2/rstanarm/tests/testthat/test_predict.R | 36 rstanarm-2.15.2/rstanarm/tests/testthat/test_stan_betareg.R | 418 ++-- rstanarm-2.15.2/rstanarm/tests/testthat/test_stan_functions.R | 5 rstanarm-2.15.2/rstanarm/tests/testthat/test_stan_glm.R | 176 + rstanarm-2.15.2/rstanarm/tests/testthat/test_stan_glmer.R | 153 + rstanarm-2.15.2/rstanarm/tests/testthat/test_stan_lm.R | 36 rstanarm-2.15.2/rstanarm/tests/testthat/test_stan_polr.R | 35 rstanarm-2.15.2/rstanarm/tools/make_cpp.R | 2 rstanarm-2.15.2/rstanarm/vignettes/betareg.Rmd | 8 rstanarm-2.15.2/rstanarm/vignettes/binomial.Rmd | 33 rstanarm-2.15.2/rstanarm/vignettes/count.Rmd | 13 rstanarm-2.15.2/rstanarm/vignettes/lm.Rmd | 6 rstanarm-2.15.2/rstanarm/vignettes/pooling.Rmd | 15 rstanarm-2.15.2/rstanarm/vignettes/priors.Rmd |only rstanarm-2.15.2/rstanarm/vignettes/rstanarm.Rmd | 2 120 files changed, 3556 insertions(+), 2632 deletions(-)
Title: Tidy, Type-Safe 'prediction()' Methods
Description: A one-function package containing 'prediction()', a type-safe alternative to 'predict()' that always returns a data frame. The package currently supports common model types (e.g., "lm", "glm") from the 'stats' package, as well as numerous other model classes from other add-on packages. See the README or main package documentation page for a complete listing.
Author: Thomas J. Leeper [aut, cre],
Carl Ganz [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between prediction versions 0.1.11 dated 2017-03-22 and 0.2.0 dated 2017-04-19
prediction-0.1.11/prediction/R/prediction-package.R |only prediction-0.1.11/prediction/man/prediction-package.Rd |only prediction-0.2.0/prediction/DESCRIPTION | 18 prediction-0.2.0/prediction/LICENSE | 4 prediction-0.2.0/prediction/MD5 | 107 +++-- prediction-0.2.0/prediction/NAMESPACE | 26 + prediction-0.2.0/prediction/NEWS.md | 50 ++ prediction-0.2.0/prediction/R/build_datalist.R | 38 +- prediction-0.2.0/prediction/R/find_data.R | 70 +++ prediction-0.2.0/prediction/R/mean_or_mode.R | 70 ++- prediction-0.2.0/prediction/R/prediction.R | 118 +++--- prediction-0.2.0/prediction/R/prediction_Arima.R | 22 - prediction-0.2.0/prediction/R/prediction_ar.R | 27 - prediction-0.2.0/prediction/R/prediction_arima0.R |only prediction-0.2.0/prediction/R/prediction_betareg.R | 35 + prediction-0.2.0/prediction/R/prediction_clm.R | 72 ++- prediction-0.2.0/prediction/R/prediction_coxph.R | 36 + prediction-0.2.0/prediction/R/prediction_crch.R | 28 + prediction-0.2.0/prediction/R/prediction_gam.R | 31 + prediction-0.2.0/prediction/R/prediction_gee.R |only prediction-0.2.0/prediction/R/prediction_glm.R | 41 +- prediction-0.2.0/prediction/R/prediction_glmx.R | 39 +- prediction-0.2.0/prediction/R/prediction_gls.R | 34 + prediction-0.2.0/prediction/R/prediction_hetglm.R | 31 + prediction-0.2.0/prediction/R/prediction_hurdle.R |only prediction-0.2.0/prediction/R/prediction_hxlr.R | 28 + prediction-0.2.0/prediction/R/prediction_ivreg.R | 29 - prediction-0.2.0/prediction/R/prediction_lda.R |only prediction-0.2.0/prediction/R/prediction_lm.R | 42 ++ prediction-0.2.0/prediction/R/prediction_lme.R |only prediction-0.2.0/prediction/R/prediction_loess.R | 31 + prediction-0.2.0/prediction/R/prediction_lqs.R |only prediction-0.2.0/prediction/R/prediction_mca.R |only prediction-0.2.0/prediction/R/prediction_mclogit.R |only prediction-0.2.0/prediction/R/prediction_merMod.R | 34 + prediction-0.2.0/prediction/R/prediction_mlogit.R | 47 +- prediction-0.2.0/prediction/R/prediction_mnlogit.R |only prediction-0.2.0/prediction/R/prediction_mnp.R |only prediction-0.2.0/prediction/R/prediction_multinom.R |only prediction-0.2.0/prediction/R/prediction_naiveBayes.R |only prediction-0.2.0/prediction/R/prediction_nls.R | 29 - prediction-0.2.0/prediction/R/prediction_nnet.R | 61 ++- prediction-0.2.0/prediction/R/prediction_plm.R |only prediction-0.2.0/prediction/R/prediction_polr.R | 35 - prediction-0.2.0/prediction/R/prediction_ppr.R |only prediction-0.2.0/prediction/R/prediction_princomp.R |only prediction-0.2.0/prediction/R/prediction_qda.R |only prediction-0.2.0/prediction/R/prediction_rlm.R |only prediction-0.2.0/prediction/R/prediction_rq.R | 33 + prediction-0.2.0/prediction/R/prediction_selection.R | 31 + prediction-0.2.0/prediction/R/prediction_survreg.R | 30 + prediction-0.2.0/prediction/R/prediction_svm.R | 82 +++- prediction-0.2.0/prediction/R/prediction_svyglm.R | 33 + prediction-0.2.0/prediction/R/prediction_vgam.R |only prediction-0.2.0/prediction/R/prediction_vglm.R |only prediction-0.2.0/prediction/R/prediction_zeroinfl.R |only prediction-0.2.0/prediction/R/print.R |only prediction-0.2.0/prediction/R/seq_range.R | 7 prediction-0.2.0/prediction/R/utils.R |only prediction-0.2.0/prediction/README.md | 62 ++- prediction-0.2.0/prediction/man/find_data.Rd | 19 - prediction-0.2.0/prediction/man/mean_or_mode.Rd | 30 + prediction-0.2.0/prediction/man/prediction.Rd | 189 +++++++--- prediction-0.2.0/prediction/man/seq_range.Rd | 9 prediction-0.2.0/prediction/tests/testthat/tests-build_datalist.R |only prediction-0.2.0/prediction/tests/testthat/tests-core.R | 40 +- prediction-0.2.0/prediction/tests/testthat/tests-find_data.R |only prediction-0.2.0/prediction/tests/testthat/tests-methods.R |only 68 files changed, 1271 insertions(+), 527 deletions(-)
Title: C++ Header Files for Stan
Description: The C++ header files of the Stan project are provided by this package, but it contains no R code, vignettes, or function documentation. There is a shared object containing part of the 'CVODES' library, but it is not accessible from R. 'StanHeaders' is only useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The 'rstan' package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.
Author: Ben Goodrich [cre, aut],
Joshua Pritikin [ctb],
Andrew Gelman [aut],
Bob Carpenter [aut],
Matt Hoffman [aut],
Daniel Lee [aut],
Michael Betancourt [aut],
Marcus Brubaker [aut],
Jiqiang Guo [aut],
Peter Li [aut],
Allen Riddell [aut],
Marco Inacio [aut],
Mitzi Morris [aut],
Jeffrey Arnold [aut],
Rob Goedman [aut],
Brian Lau [aut],
Rob Trangucci [aut],
Jonah Gabry [aut],
Alp Kucukelbir [aut],
Robert Grant [aut],
Dustin Tran [aut],
Michael Malecki [aut],
Yuanjun Gao [aut],
Trustees of Columbia University [cph],
Lawrence Livermore National Security [cph] (CVODES),
The Regents of the University of California [cph] (CVODES),
Southern Methodist University [cph] (CVODES)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between StanHeaders versions 2.14.0-1 dated 2017-01-09 and 2.15.0-1 dated 2017-04-19
StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/interface_callbacks |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_data_origin.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_data_origin_def.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_fun_origin.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_fun_origin_def.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/print_var_origin.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/print_var_origin_def.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/lang/ast/var_origin.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/services/arguments |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/services/init |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/services/io |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/services/mcmc |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/services/optimize/do_bfgs_optimize.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/services/sample/generate_transitions.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/services/sample/init_adapt.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/services/sample/init_nuts.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/services/sample/init_softabs.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/services/sample/init_static_hmc.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/services/sample/init_windowed_adapt.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/services/sample/init_xhmc.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/services/sample/mcmc_writer.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/services/sample/progress.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/src/stan/services/variational |only StanHeaders-2.14.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/array_builder.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/promoter.hpp |only StanHeaders-2.14.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/VectorViewMvt.hpp |only StanHeaders-2.15.0-1/StanHeaders/DESCRIPTION | 10 StanHeaders-2.15.0-1/StanHeaders/LICENSE | 2 StanHeaders-2.15.0-1/StanHeaders/MD5 | 1082 +- StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/callbacks |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/io/array_var_context.hpp | 14 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/io/empty_var_context.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/io/json/json_data_handler.hpp | 22 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/io/json/json_parser.hpp | 665 - StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/io/random_var_context.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/io/var_context.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast.hpp | 9 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/expr_type_def.hpp | 3 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var_vis.hpp | 18 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var_vis_def.hpp | 19 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_var_vis.hpp | 20 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/has_var_vis_def.hpp | 22 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nil_vis.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nil_vis_def.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/print_scope.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/print_scope_def.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/var_occurs_vis.hpp | 22 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/fun/var_occurs_vis_def.hpp | 19 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/array_expr.hpp | 17 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/array_expr_def.hpp | 11 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/conditional_op.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/double_literal.hpp | 11 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/double_literal_def.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/expression.hpp | 20 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/expression_def.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/expression_type_vis.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/expression_type_vis_def.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/int_literal.hpp | 18 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/int_literal_def.hpp | 11 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/matrix_expr.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/matrix_expr_def.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/row_vector_expr.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/node/row_vector_expr_def.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/origin_block.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/scope.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/scope_def.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/variable_map.hpp | 25 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast/variable_map_def.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/ast_def.cpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/function_signatures.h | 10 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/generator |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/generator.hpp | 5081 ---------- StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/expression07_grammar.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/expression_grammar.hpp | 14 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/functions_grammar.hpp | 2 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/functions_grammar_def.hpp | 11 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/indexes_grammar.hpp | 20 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/indexes_grammar_def.hpp | 29 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/program_grammar.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/program_grammar_def.hpp | 51 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/semantic_actions.hpp | 106 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/semantic_actions_def.cpp | 321 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_2_grammar.hpp | 10 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_2_grammar_def.hpp | 21 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_grammar.hpp | 55 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/statement_grammar_def.hpp | 105 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/term_grammar.hpp | 36 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/term_grammar_def.hpp | 19 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/var_decls_grammar.hpp | 48 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/grammars/var_decls_grammar_def.hpp | 25 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/lang/parser.hpp | 2 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/base_mcmc.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/fixed_param_sampler.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/base_hmc.hpp | 12 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp | 69 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp | 18 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/dense_e_point.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/diag_e_metric.hpp | 18 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/diag_e_point.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/ps_point.hpp | 5 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/softabs_metric.hpp | 86 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/softabs_point.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/unit_e_metric.hpp | 18 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/unit_e_point.hpp | 2 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/base_integrator.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/base_leapfrog.hpp | 32 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/expl_leapfrog.hpp | 22 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/integrators/impl_leapfrog.hpp | 34 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_dense_e_nuts.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_diag_e_nuts.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_softabs_nuts.hpp | 9 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/adapt_unit_e_nuts.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts/base_nuts.hpp | 14 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/adapt_dense_e_nuts_classic.hpp | 15 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/adapt_diag_e_nuts_classic.hpp | 12 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/adapt_unit_e_nuts_classic.hpp | 10 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/base_nuts_classic.hpp | 14 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/dense_e_nuts_classic.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/diag_e_nuts_classic.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/nuts_classic/unit_e_nuts_classic.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_dense_e_static_hmc.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_diag_e_static_hmc.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_softabs_static_hmc.hpp | 9 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/adapt_unit_e_static_hmc.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static/base_static_hmc.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_dense_e_static_uniform.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_diag_e_static_uniform.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_softabs_static_uniform.hpp | 9 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/adapt_unit_e_static_uniform.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/static_uniform/base_static_uniform.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_dense_e_xhmc.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_diag_e_xhmc.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_softabs_xhmc.hpp | 9 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/adapt_unit_e_xhmc.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/base_xhmc.hpp | 10 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/sample.hpp | 2 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/stepsize_covar_adapter.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/stepsize_var_adapter.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/mcmc/windowed_adaptation.hpp | 36 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/model/finite_diff_grad.hpp | 5 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/model/gradient.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/model/indexing/lvalue.hpp | 40 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/model/test_gradients.hpp | 80 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/optimization/bfgs_linesearch.hpp | 114 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/optimization/newton.hpp | 24 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/diagnose |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/experimental |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/optimize/bfgs.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/optimize/defaults.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/optimize/lbfgs.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/optimize/newton.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/sample/defaults.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/sample/fixed_param.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_dense_e.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_dense_e_adapt.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_diag_e.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_diag_e_adapt.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_unit_e.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_nuts_unit_e_adapt.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_dense_e.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_dense_e_adapt.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_diag_e.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_diag_e_adapt.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_unit_e.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/sample/hmc_static_unit_e_adapt.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/services/util |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/variational/advi.hpp | 123 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/variational/base_family.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/variational/families/normal_fullrank.hpp | 22 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/variational/families/normal_meanfield.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/variational/print_progress.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/src/stan/version.hpp | 2 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/fwd/scal/fun/rising_factorial.hpp | 1 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/arr.hpp | 3 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/array_builder.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/common_type.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/arr/fun/promote_elements.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/arr/functor/coupled_ode_system.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp | 2 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat.hpp | 5 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_corr_constrain.hpp | 1 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/common_type.hpp | 23 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_exp_quad.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/factor_U.hpp | 2 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/promote_common.hpp | 17 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/promote_elements.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/read_corr_L.hpp | 1 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_indices.hpp | 1 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_indices_asc.hpp | 1 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_indices_desc.hpp | 1 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/to_matrix.hpp | 232 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/to_row_vector.hpp | 3 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/to_vector.hpp | 3 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/meta/vector_seq_view.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_log.hpp | 86 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_log.hpp | 61 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_rng.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/dirichlet_log.hpp | 55 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/gaussian_dlm_obs_log.hpp | 315 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/inv_wishart_log.hpp | 81 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_cholesky_log.hpp | 89 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_log.hpp | 83 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_cov_log.hpp | 96 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/matrix_normal_prec_log.hpp | 83 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_cholesky_log.hpp | 67 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_log.hpp | 71 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_log.hpp | 118 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_lpdf.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_log.hpp | 109 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_prec_log.hpp | 120 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_prec_lpdf.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_log.hpp | 135 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_lpdf.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/multinomial_log.hpp | 50 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_log.hpp | 57 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/mat/prob/wishart_log.hpp | 73 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_2F1_converges.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_3F2_converges.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_bounded.hpp | 11 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_greater.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_greater_or_equal.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_less.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/err/check_less_or_equal.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/F32.hpp | 96 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/common_type.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_2F1.hpp | 106 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_F32.hpp | 142 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_reg_inc_gamma.hpp | 40 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_integer.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_nonpositive_integer.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/fun/promote_elements.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/VectorView.hpp | 2 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/max_size.hpp | 16 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/scalar_seq_view.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/meta/seq_view.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_ccdf_log.hpp | 66 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_cdf.hpp | 18 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_cdf_log.hpp | 65 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_lccdf.hpp | 17 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_lcdf.hpp | 17 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_log.hpp | 101 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_log.hpp | 87 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_lpmf.hpp | 19 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_lpmf.hpp | 19 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_rng.hpp | 10 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_ccdf_log.hpp | 123 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_cdf.hpp | 27 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_cdf_log.hpp | 123 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_lccdf.hpp | 26 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_lcdf.hpp | 33 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_log.hpp | 153 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_lpmf.hpp | 27 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_rng.hpp | 22 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_ccdf_log.hpp | 122 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_cdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_cdf_log.hpp | 122 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_lccdf.hpp | 24 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_lcdf.hpp | 23 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_log.hpp | 165 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_lpdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_rng.hpp | 11 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_ccdf_log.hpp | 86 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_cdf.hpp | 23 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_cdf_log.hpp | 85 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_lccdf.hpp | 23 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_lcdf.hpp | 23 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_log.hpp | 99 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_logit_log.hpp | 105 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_logit_lpmf.hpp | 24 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_lpmf.hpp | 25 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_rng.hpp | 13 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_ccdf_log.hpp | 74 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_cdf.hpp | 28 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_cdf_log.hpp | 74 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_lccdf.hpp | 22 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_lcdf.hpp | 22 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_log.hpp | 106 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_lpdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_rng.hpp | 11 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_ccdf_log.hpp | 98 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_cdf.hpp | 21 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_cdf_log.hpp | 98 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_lccdf.hpp | 18 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_lcdf.hpp | 18 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_log.hpp | 108 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_lpdf.hpp | 5 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_rng.hpp | 10 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_ccdf_log.hpp | 83 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_cdf.hpp | 28 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_cdf_log.hpp | 83 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_lccdf.hpp | 22 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_lcdf.hpp | 21 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_log.hpp | 108 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_lpdf.hpp | 23 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_rng.hpp | 11 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_ccdf_log.hpp | 118 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_cdf.hpp | 9 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_cdf_log.hpp | 119 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_lccdf.hpp | 9 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_lcdf.hpp | 9 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_log.hpp | 119 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_lpdf.hpp | 9 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_rng.hpp | 1 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_ccdf_log.hpp | 53 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_cdf.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_cdf_log.hpp | 59 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_lccdf.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_lcdf.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_log.hpp | 69 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_lpdf.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_rng.hpp | 1 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_ccdf_log.hpp | 69 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_cdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_cdf_log.hpp | 65 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_lccdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_lcdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_log.hpp | 122 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_lpdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_rng.hpp | 1 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_ccdf_log.hpp | 112 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_cdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_cdf_log.hpp | 111 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_lccdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_lcdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_log.hpp | 124 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_lpdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_rng.hpp | 1 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_ccdf_log.hpp | 71 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_cdf.hpp | 23 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_cdf_log.hpp | 67 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_lccdf.hpp | 23 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_lcdf.hpp | 23 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_log.hpp | 94 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_lpdf.hpp | 23 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_rng.hpp | 12 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/hypergeometric_log.hpp | 62 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/hypergeometric_lpmf.hpp | 10 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_ccdf_log.hpp | 103 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_cdf.hpp | 19 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_cdf_log.hpp | 102 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_lccdf.hpp | 19 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_lcdf.hpp | 19 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_log.hpp | 105 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_lpdf.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_rng.hpp | 11 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_ccdf_log.hpp | 117 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_cdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_cdf_log.hpp | 116 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_lccdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_lcdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_log.hpp | 125 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_lpdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_rng.hpp | 1 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_ccdf_log.hpp | 89 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_cdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_cdf_log.hpp | 89 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_lccdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_lcdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_log.hpp | 121 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_lpdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_rng.hpp | 1 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_ccdf_log.hpp | 79 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_cdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_cdf_log.hpp | 79 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_lccdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_lcdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_log.hpp | 132 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_lpdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_ccdf_log.hpp | 39 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_cdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_cdf_log.hpp | 50 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_lccdf.hpp | 5 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_lcdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log.hpp | 123 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_log.hpp | 118 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_lpmf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_lpmf.hpp | 22 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_ccdf_log.hpp | 122 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_cdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_cdf_log.hpp | 121 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_lccdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_lcdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_log.hpp | 158 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_lpmf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_ccdf_log.hpp | 89 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_cdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_cdf_log.hpp | 88 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_lccdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_lcdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_log.hpp | 96 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_lpdf.hpp | 12 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_sufficient_log.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_sufficient_lpdf.hpp |only StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_ccdf_log.hpp | 81 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_cdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_cdf_log.hpp | 85 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_lccdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_lcdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_log.hpp | 113 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_lpdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_ccdf_log.hpp | 106 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_cdf.hpp | 10 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_cdf_log.hpp | 107 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_lccdf.hpp | 10 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_lcdf.hpp | 10 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_log.hpp | 131 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_lpdf.hpp | 10 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_ccdf_log.hpp | 72 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_cdf.hpp | 5 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_cdf_log.hpp | 71 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_lccdf.hpp | 5 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_lcdf.hpp | 5 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log.hpp | 78 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_log.hpp | 89 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_lpmf.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_lpmf.hpp | 6 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_ccdf_log.hpp | 67 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_cdf.hpp | 5 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_cdf_log.hpp | 72 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_lccdf.hpp | 5 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_lcdf.hpp | 5 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_log.hpp | 85 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_lpdf.hpp | 5 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_ccdf_log.hpp | 121 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_cdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_cdf_log.hpp | 120 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_lccdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_lcdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_log.hpp | 138 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_lpdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_rng.hpp | 1 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_ccdf_log.hpp | 96 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_cdf.hpp | 10 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_cdf_log.hpp | 96 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_lccdf.hpp | 10 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_lcdf.hpp | 10 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_log.hpp | 130 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_lpdf.hpp | 10 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_ccdf_log.hpp | 180 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_cdf.hpp | 9 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_cdf_log.hpp | 180 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_lccdf.hpp | 9 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_lcdf.hpp | 9 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_log.hpp | 177 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_lpdf.hpp | 9 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_ccdf_log.hpp | 76 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_cdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_cdf_log.hpp | 76 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_lccdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_lcdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_log.hpp | 88 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_lpdf.hpp | 7 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_log.hpp | 109 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_lpdf.hpp | 8 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_ccdf_log.hpp | 65 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_cdf.hpp | 22 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_cdf_log.hpp | 69 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_lccdf.hpp | 22 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_lcdf.hpp | 22 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_log.hpp | 126 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_lpdf.hpp | 23 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_rng.hpp | 11 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/wiener_log.hpp | 180 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/prim/scal/prob/wiener_lpdf.hpp | 11 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/rev/arr/functor/coupled_ode_system.hpp | 96 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/cholesky_decompose.hpp | 238 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/rev/mat/fun/cov_exp_quad.hpp | 4 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/rev/scal/fun/grad_inc_beta.hpp | 11 StanHeaders-2.15.0-1/StanHeaders/inst/include/stan/math/version.hpp | 2 StanHeaders-2.15.0-1/StanHeaders/src/Makevars.win | 2 StanHeaders-2.15.0-1/StanHeaders/src/cvodes/src/nvec_ser/nvector_serial.c | 21 StanHeaders-2.15.0-1/StanHeaders/src/cvodes/src/sundials/sundials_direct.c | 50 StanHeaders-2.15.0-1/StanHeaders/src/init.c |only 475 files changed, 5131 insertions(+), 17733 deletions(-)
Title: R Interface to Stan
Description: User-facing R functions are provided to parse, compile, test,
estimate, and analyze Stan models by accessing the header-only Stan library
provided by the 'StanHeaders' package. The Stan project develops a
probabilistic programming language that implements full Bayesian statistical
inference via Markov Chain Monte Carlo, rough Bayesian inference via 'variational'
approximation, and (optionally penalized) maximum likelihood estimation via
optimization. In all three cases, automatic differentiation is used to quickly
and accurately evaluate gradients without burdening the user with the need
to derive the partial derivatives.
Author: Jiqiang Guo [aut],
Jonah Gabry [aut],
Ben Goodrich [cre, aut],
Daniel Lee [ctb],
Krzysztof Sakrejda [ctb],
Trustees of Columbia University [cph],
Oleg Sklyar [cph] (R/cxxfunplus.R),
The R Core Team [cph] (R/pairs.R, R/dynGet.R),
Jens Oehlschlaegel-Akiyoshi [cph] (R/pairs.R),
Hadley Wickham [cph] (R/rtools.R),
Joel de Guzman [cph] (Boost),
John Fletcher [cph] (Boost),
Thomas Heller [cph] (Boost),
Eric Niebler [cph] (Boost)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between rstan versions 2.14.2 dated 2017-03-19 and 2.15.1 dated 2017-04-19
rstan-2.14.2/rstan/inst/include/rstan/io/rlist_ref_var_context_factory.hpp |only rstan-2.15.1/rstan/DESCRIPTION | 17 rstan-2.15.1/rstan/MD5 | 124 rstan-2.15.1/rstan/NAMESPACE | 2 rstan-2.15.1/rstan/R/AllClass.R | 2 rstan-2.15.1/rstan/R/Rcpp_module_def.R | 2 rstan-2.15.1/rstan/R/chains.R | 2 rstan-2.15.1/rstan/R/cxxdso-class.R | 2 rstan-2.15.1/rstan/R/cxxfunplus.R | 2 rstan-2.15.1/rstan/R/expose_stan_functions.R | 10 rstan-2.15.1/rstan/R/git_rstan_head.R | 7 rstan-2.15.1/rstan/R/lookup.R | 2 rstan-2.15.1/rstan/R/makefile_op.R | 2 rstan-2.15.1/rstan/R/misc.R | 1328 ++-- rstan-2.15.1/rstan/R/monitor.R | 2 rstan-2.15.1/rstan/R/options.R | 2 rstan-2.15.1/rstan/R/pairs.R | 4 rstan-2.15.1/rstan/R/plugin.R | 2 rstan-2.15.1/rstan/R/rstan.R | 2 rstan-2.15.1/rstan/R/rstan_package_skeleton.R | 2 rstan-2.15.1/rstan/R/rtools.R | 2 rstan-2.15.1/rstan/R/stan_csv.R | 5 rstan-2.15.1/rstan/R/stan_demo.R | 5 rstan-2.15.1/rstan/R/stan_plot.R | 6 rstan-2.15.1/rstan/R/stanc.R | 2 rstan-2.15.1/rstan/R/stanfit-class.R | 2 rstan-2.15.1/rstan/R/stanmodel-class.R | 23 rstan-2.15.1/rstan/R/sysdata.rda |binary rstan-2.15.1/rstan/R/zzz.R | 2 rstan-2.15.1/rstan/build/vignette.rds |binary rstan-2.15.1/rstan/inst/NEWS | 21 rstan-2.15.1/rstan/inst/doc/external.html | 14 rstan-2.15.1/rstan/inst/doc/rstan.html | 195 rstan-2.15.1/rstan/inst/doc/stanfit-objects.html | 160 rstan-2.15.1/rstan/inst/include/boost_not_in_BH/boost/math |only rstan-2.15.1/rstan/inst/include/rstan/comment_writer.hpp |only rstan-2.15.1/rstan/inst/include/rstan/filtered_values.hpp | 34 rstan-2.15.1/rstan/inst/include/rstan/rstan_writer.hpp | 174 rstan-2.15.1/rstan/inst/include/rstan/stan_args.hpp | 9 rstan-2.15.1/rstan/inst/include/rstan/stan_fit.hpp | 2699 ++++------ rstan-2.15.1/rstan/inst/include/rstan/sum_values.hpp | 47 rstan-2.15.1/rstan/inst/include/rstan/value.hpp |only rstan-2.15.1/rstan/inst/include/rstan/values.hpp | 28 rstan-2.15.1/rstan/man/sflist2stanfit.Rd | 4 rstan-2.15.1/rstan/man/stan.Rd | 4 rstan-2.15.1/rstan/man/stanfit-method-logprob.Rd | 1 rstan-2.15.1/rstan/man/stanmodel-method-optimizing.Rd | 3 rstan-2.15.1/rstan/src/chains.cpp | 2 rstan-2.15.1/rstan/src/init.cpp | 2 rstan-2.15.1/rstan/src/lang__ast_def.cpp | 2 rstan-2.15.1/rstan/src/lang__grammars__bare_type_grammar_inst.cpp | 2 rstan-2.15.1/rstan/src/lang__grammars__expression07_grammar_inst.cpp | 2 rstan-2.15.1/rstan/src/lang__grammars__expression_grammar_inst.cpp | 2 rstan-2.15.1/rstan/src/lang__grammars__functions_grammar_inst.cpp | 2 rstan-2.15.1/rstan/src/lang__grammars__indexes_grammar_inst.cpp | 2 rstan-2.15.1/rstan/src/lang__grammars__program_grammar_inst.cpp | 2 rstan-2.15.1/rstan/src/lang__grammars__statement_2_grammar_inst.cpp | 2 rstan-2.15.1/rstan/src/lang__grammars__statement_grammar_inst.cpp | 2 rstan-2.15.1/rstan/src/lang__grammars__term_grammar_inst.cpp | 2 rstan-2.15.1/rstan/src/lang__grammars__var_deccls_grammar_inst.cpp | 2 rstan-2.15.1/rstan/src/lang__grammars__whitespace_grammar_inst.cpp | 2 rstan-2.15.1/rstan/src/misc.cpp | 2 rstan-2.15.1/rstan/src/stanc.cpp | 2 rstan-2.15.1/rstan/tools/stan-functions.R | 2 rstan-2.15.1/rstan/tools/stan-functions.txt | 1285 ++-- 65 files changed, 2937 insertions(+), 3338 deletions(-)
Title: A Companion to the e-Book "YaRrr!: The Pirate's Guide to R"
Description: Contains a mixture of functions and data sets referred to in the introductory e-book "YaRrr!: The Pirate's Guide to R". The latest version of the e-book is available for free at <https://www.thepiratesguidetor.com>.
Author: Nathaniel Phillips [aut, cre]
Maintainer: Nathaniel Phillips <yarrr.book@gmail.com>
Diff between yarrr versions 0.1.4 dated 2017-02-06 and 0.1.5 dated 2017-04-19
DESCRIPTION | 12 +- MD5 | 51 +++++------ NAMESPACE | 3 NEWS.md | 18 +++ R/piratepal_function.R | 179 ++++++++++++++------------------------- R/pirateplot_function.R | 215 ++++++++++++++++++++++++++++++++++++----------- R/zzz.R | 2 inst/decision.jpg |only inst/doc/guide.html | 8 - inst/doc/piratepal.html | 6 - inst/doc/pirateplot.html | 38 ++++---- man/BeardLengths.Rd | 1 man/apa.Rd | 1 man/auction.Rd | 1 man/capture.Rd | 1 man/diamonds.Rd | 1 man/examscores.Rd | 1 man/movies.Rd | 1 man/piratepal.Rd | 9 + man/pirateplot.Rd | 64 +++++++------ man/pirates.Rd | 1 man/pirateserrors.Rd | 1 man/pircharter.Rd | 1 man/poopdeck.Rd | 1 man/recodev.Rd | 1 man/transparent.Rd | 1 man/yarrr.guide.Rd | 1 27 files changed, 352 insertions(+), 267 deletions(-)
Title: Time Series Analysis and Computational Finance
Description: Time series analysis and computational finance.
Author: Adrian Trapletti [aut],
Kurt Hornik [aut, cre],
Blake LeBaron [ctb] (BDS test code)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tseries versions 0.10-39 dated 2017-04-18 and 0.10-40 dated 2017-04-19
ChangeLog | 7 +++++++ DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/finance.R | 2 +- man/get.hist.quote.Rd | 6 +++--- man/plotOHLC.Rd | 7 ++++--- 6 files changed, 23 insertions(+), 15 deletions(-)
Title: Parameter Estimation for the Averaging Model of Information
Integration Theory
Description: Functions to estimate parameters of averaging models of Anderson's Information Integration Theory.
Author: Giulio Vidotto <giulio.vidotto@unipd.it>,
Stefano Noventa <stefano.noventa@uni-tuebingen.de>,
Davide Massidda <davide.massidda@gmail.com>,
Marco Vicentini <marco.vicentini@gmail.com>
Maintainer: Davide Massidda <davide.massidda@gmail.com>
Diff between rAverage versions 0.4-13 dated 2015-01-16 and 0.5-3 dated 2017-04-19
DESCRIPTION | 18 MD5 | 29 - NAMESPACE | 10 R/classes.methods.R | 605 +++++++++++++++++------------- R/fun.rav.R | 942 ++++++++++++++++++++++-------------------------- R/rAverage.R | 223 +++++------ man/AIC.Rd |only man/coef.Rd |only man/fitted.Rd |only man/fmdata1.Rd | 51 +- man/rAverage-package.Rd | 12 man/rav.Rd | 6 man/rav.indices.Rd | 46 -- man/rav.single.Rd | 7 man/rav2file.Rd | 5 man/residuals.Rd |only src/combinations.c | 26 - src/rAverage_init.c |only 18 files changed, 998 insertions(+), 982 deletions(-)
Title: Automatic Forecasting Procedure
Description: Implements a procedure for forecasting time series data based on
an additive model where non-linear trends are fit with yearly and weekly
seasonality, plus holidays. It works best with daily periodicity data with
at least one year of historical data. Prophet is robust to missing data,
shifts in the trend, and large outliers.
Author: Sean Taylor [cre, aut],
Ben Letham [aut]
Maintainer: Sean Taylor <sjt@fb.com>
Diff between prophet versions 0.1 dated 2017-02-01 and 0.1.1 dated 2017-04-19
prophet-0.1.1/prophet/DESCRIPTION | 12 prophet-0.1.1/prophet/MD5 | 66 - prophet-0.1.1/prophet/R/prophet.R | 537 ++++++----- prophet-0.1.1/prophet/R/zzz.R |only prophet-0.1.1/prophet/build/vignette.rds |binary prophet-0.1.1/prophet/inst/doc/quick_start.html | 388 +++++-- prophet-0.1.1/prophet/inst/stan/prophet_linear_growth.RData |only prophet-0.1.1/prophet/inst/stan/prophet_linear_growth.stan | 13 prophet-0.1.1/prophet/inst/stan/prophet_logistic_growth.stan | 24 prophet-0.1.1/prophet/man/fit.prophet.Rd | 14 prophet-0.1.1/prophet/man/fourier_series.Rd | 4 prophet-0.1.1/prophet/man/get_prophet_stan_model.Rd | 4 prophet-0.1.1/prophet/man/linear_growth_init.Rd | 6 prophet-0.1.1/prophet/man/logistic_growth_init.Rd | 2 prophet-0.1.1/prophet/man/make_all_seasonality_features.Rd | 4 prophet-0.1.1/prophet/man/make_holiday_features.Rd | 2 prophet-0.1.1/prophet/man/make_seasonality_features.Rd | 2 prophet-0.1.1/prophet/man/plot.prophet.Rd | 10 prophet-0.1.1/prophet/man/plot_holidays.Rd |only prophet-0.1.1/prophet/man/plot_trend.Rd |only prophet-0.1.1/prophet/man/plot_weekly.Rd |only prophet-0.1.1/prophet/man/plot_yearly.Rd |only prophet-0.1.1/prophet/man/predict.prophet.Rd | 9 prophet-0.1.1/prophet/man/predict_seasonal_components.Rd | 9 prophet-0.1.1/prophet/man/predict_trend.Rd | 5 prophet-0.1.1/prophet/man/predict_uncertainty.Rd | 5 prophet-0.1.1/prophet/man/prophet.Rd | 41 prophet-0.1.1/prophet/man/prophet_plot_components.Rd | 17 prophet-0.1.1/prophet/man/sample_model.Rd | 4 prophet-0.1.1/prophet/man/sample_predictive_trend.Rd | 4 prophet-0.1.1/prophet/man/set_auto_seasonalities.Rd |only prophet-0.1.1/prophet/man/set_changepoints.Rd | 7 prophet-0.1.1/prophet/man/setup_dataframe.Rd | 4 prophet-0.1.1/prophet/src/Makevars | 3 prophet-0.1.1/prophet/tests/testthat/data.csv | 42 prophet-0.1.1/prophet/tests/testthat/test_prophet.R | 85 + prophet-0.1/prophet/man/get_changepoint_indexes.Rd |only prophet-0.1/prophet/man/get_changepoint_times.Rd |only prophet-0.1/prophet/tools |only 39 files changed, 872 insertions(+), 451 deletions(-)
More information about leaflet.minicharts at CRAN
Permanent link
Title: Dynamic Nomograms for Linear, Generalized Linear and
Proportional Hazard Models
Description: Demonstrate the results of a statistical model object as a dynamic nomogram in an RStudio panel or web browser. Also, the generic DNbuilder() function in this package provides a simple and straightforward way to build and publish a dynamic nomogram on the web to use the app independent of R. 'DynNom' supports a variety of model objects; lm(), glm(), coxph() models and also ols(), Glm(), lrm(), cph() models in the 'rms' package.
Author: Amirhossein Jalali, Davood Roshan, Alberto Alvarez-Iglesias, John Newell
Maintainer: Amirhossein Jalali <a.jalali2@nuigalway.ie>
Diff between DynNom versions 4.1 dated 2017-03-23 and 4.1.1 dated 2017-04-19
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NAMESPACE | 2 +- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Computational Geometry
Description: R interface to (some of) cddlib
(<http://www.ifor.math.ethz.ch/~fukuda/cdd_home/cdd.html>).
Converts back and forth between two representations of a convex polytope:
as solution of a set of linear equalities and inequalities and as
convex hull of set of points and rays.
Also does linear programming and redundant generator elimination
(for example, convex hull in n dimensions). All functions can use exact
infinite-precision rational arithmetic.
Author: Charles J. Geyer <charlie@stat.umn.edu> and
Glen D. Meeden <glen@stat.umn.edu>, incorporates code from
cddlib (ver 0.94f) written by Komei Fukuda <fukuda@ifor.math.ethz.ch>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>
Diff between rcdd versions 1.1-11 dated 2017-03-13 and 1.1-13 dated 2017-04-19
CHANGES | 7 ++++ DESCRIPTION | 13 ++++--- MD5 | 54 ++++++++++++++++---------------- inst/doc/vinny.R | 77 ++++++++++++++++++----------------------------- inst/doc/vinny.Rnw | 17 +--------- inst/doc/vinny.pdf |binary src/allfaces.c | 4 +- src/allfaces_f.c | 4 +- src/linearity.c | 3 + src/linearity_f.c | 3 + src/lpcdd.c | 3 + src/lpcdd_f.c | 3 + tests/allfaces.Rout.save | 11 ++++-- tests/bar-gmp.Rout.save | 11 ++++-- tests/bug.Rout.save | 11 ++++-- tests/bug2.Rout.save | 11 ++++-- tests/chull.Rout.save | 11 ++++-- tests/convert.Rout.save | 11 ++++-- tests/fred.Rout.save | 11 ++++-- tests/lpcdd.Rout.save | 11 ++++-- tests/oops.Rout.save | 11 ++++-- tests/qmatmult.Rout.save | 11 ++++-- tests/qux-gmp.Rout.save | 11 ++++-- tests/qux.Rout.save | 11 ++++-- tests/redund.Rout.save | 11 ++++-- tests/sammy.Rout.save | 11 ++++-- tests/zero.Rout.save | 12 ++++--- vignettes/vinny.Rnw | 17 +--------- 28 files changed, 196 insertions(+), 175 deletions(-)
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial trading strategies.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, ctb],
Wouter Thielen [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between quantmod versions 0.4-7 dated 2016-10-24 and 0.4-8 dated 2017-04-19
DESCRIPTION | 11 ++-- MD5 | 46 +++++++++--------- R/adjustOHLC.R | 2 R/chart_Series.R | 11 +--- R/getDividends.R | 14 ++++- R/getQuote.R | 2 R/getSplits.R | 2 R/getSymbols.R | 115 ++++++++++++++++++++++++++--------------------- R/zzz.R | 6 ++ man/buildData.Rd | 2 man/getDividends.Rd | 5 +- man/getFX.Rd | 2 man/getMetals.Rd | 2 man/getSymbols.FRED.Rd | 2 man/getSymbols.MySQL.Rd | 2 man/getSymbols.Rd | 2 man/getSymbols.csv.Rd | 2 man/getSymbols.google.Rd | 2 man/getSymbols.oanda.Rd | 9 ++- man/getSymbols.rda.Rd | 2 man/getSymbols.yahoo.Rd | 2 man/getSymbols.yahooj.Rd | 2 man/quantmod-package.Rd | 6 +- man/specifyModel.Rd | 2 24 files changed, 141 insertions(+), 112 deletions(-)
Title: Fetch Economic and Financial Time Series Data from Public
Sources
Description: Download economic and financial time series from public sources,
including the St Louis Fed's FRED system, Yahoo Finance, the US Bureau of Labor Statistics,
the US Energy Information Administration, the World Bank, Eurostat, the European Central Bank,
the Bank of England, the UK's Office of National Statistics, Deutsche Bundesbank, and INSEE.
Author: Abiel Reinhart <abielr@gmail.com>
Maintainer: Abiel Reinhart <abielr@gmail.com>
Diff between pdfetch versions 0.1.9 dated 2017-04-15 and 0.2.1 dated 2017-04-19
DESCRIPTION | 10 ++++---- MD5 | 13 +++++------ NAMESPACE | 1 NEWS | 8 ++++++ R/pdfetch.R | 54 ++++++++++++++++++++++++++++++++++++++++++++-- README.md | 1 inst/tests/test-pdfetch.R | 4 +++ man/pdfetch_BUNDESBANK.Rd |only 8 files changed, 78 insertions(+), 13 deletions(-)
Title: Linear Mixed-Effects Models using 'Eigen' and S4
Description: Fit linear and generalized linear mixed-effects models.
The models and their components are represented using S4 classes and
methods. The core computational algorithms are implemented using the
'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue".
Author: Douglas Bates [aut],
Martin Maechler [aut],
Ben Bolker [aut, cre],
Steven Walker [aut],
Rune Haubo Bojesen Christensen [ctb],
Henrik Singmann [ctb],
Bin Dai [ctb],
Gabor Grothendieck [ctb],
Peter Green [ctb]
Maintainer: Ben Bolker <bbolker+lme4@gmail.com>
Diff between lme4 versions 1.1-12 dated 2016-04-16 and 1.1-13 dated 2017-04-19
lme4-1.1-12/lme4/inst/doc/PLSvGLS.R |only lme4-1.1-12/lme4/inst/doc/PLSvGLS.Rnw |only lme4-1.1-12/lme4/inst/doc/Theory.R |only lme4-1.1-12/lme4/inst/doc/Theory.Rnw |only lme4-1.1-12/lme4/inst/doc/lmer.R |only lme4-1.1-12/lme4/inst/doc/lmer.Rnw |only lme4-1.1-12/lme4/inst/doc/lmerperf.R |only lme4-1.1-12/lme4/inst/doc/lmerperf.Rmd |only lme4-1.1-12/lme4/inst/testdata/lme-tst-fits.Rout |only lme4-1.1-12/lme4/man/varianceProf.Rd |only lme4-1.1-12/lme4/tests/AAAtest-all.Rout |only lme4-1.1-12/lme4/tests/Rplots.pdf |only lme4-1.1-12/lme4/tests/boundary_plots.pdf |only lme4-1.1-12/lme4/tests/testthat/Rplots.pdf |only lme4-1.1-12/lme4/tests/testthat/bad_offset.rds |only lme4-1.1-12/lme4/tests/testthat/good_offset.rds |only lme4-1.1-12/lme4/tests/testthat/napredict2.R |only lme4-1.1-12/lme4/tests/testthat/refit_debug.rda |only lme4-1.1-12/lme4/tests/testthat/refit_debug_1.rda |only lme4-1.1-12/lme4/tests/testthat/refit_debug_2.rda |only lme4-1.1-12/lme4/tests/testthat/test-glmer.Rout |only lme4-1.1-12/lme4/tests/testthat/test-nbinom_refit.R |only lme4-1.1-12/lme4/tests/testthat/tmp.html |only lme4-1.1-12/lme4/tests/testthat/wenseleers.rda |only lme4-1.1-12/lme4/tests/timings.pdf |only lme4-1.1-12/lme4/vignettes/lmer.R |only lme4-1.1-13/lme4/DESCRIPTION | 6 lme4-1.1-13/lme4/MD5 | 107 +++++------- lme4-1.1-13/lme4/NAMESPACE | 2 lme4-1.1-13/lme4/R/checkConv.R | 110 ------------ lme4-1.1-13/lme4/R/lmList.R | 2 lme4-1.1-13/lme4/R/lmer.R | 54 +++--- lme4-1.1-13/lme4/R/modular.R | 9 - lme4-1.1-13/lme4/R/nbinom.R | 5 lme4-1.1-13/lme4/R/predict.R | 73 ++++++-- lme4-1.1-13/lme4/R/profile.R | 84 ++++++--- lme4-1.1-13/lme4/R/utilities.R | 39 +++- lme4-1.1-13/lme4/inst/NEWS.Rd | 24 ++ lme4-1.1-13/lme4/inst/doc/PLSvGLS.pdf |binary lme4-1.1-13/lme4/inst/doc/Theory.pdf |binary lme4-1.1-13/lme4/inst/doc/lmer.pdf |binary lme4-1.1-13/lme4/inst/testdata/fakesim.RData |only lme4-1.1-13/lme4/inst/utils/allFit.R | 5 lme4-1.1-13/lme4/man/bootMer.Rd | 15 + lme4-1.1-13/lme4/man/checkConv.Rd |only lme4-1.1-13/lme4/man/confint.merMod.Rd | 2 lme4-1.1-13/lme4/man/glmer.Rd | 2 lme4-1.1-13/lme4/man/lmerControl.Rd | 16 + lme4-1.1-13/lme4/man/modular.Rd | 6 lme4-1.1-13/lme4/man/plot.merMod.Rd | 12 - lme4-1.1-13/lme4/man/predict.merMod.Rd | 25 +- lme4-1.1-13/lme4/man/profile-methods.Rd | 35 +++- lme4-1.1-13/lme4/man/simulate.merMod.Rd | 18 +- lme4-1.1-13/lme4/src/external.cpp | 11 - lme4-1.1-13/lme4/src/glmFamily.cpp | 10 + lme4-1.1-13/lme4/src/predModule.cpp | 2 lme4-1.1-13/lme4/tests/agridat_gotway.R | 3 lme4-1.1-13/lme4/tests/refit.Rout | 171 ++++++-------------- lme4-1.1-13/lme4/tests/savecopy.rda |only lme4-1.1-13/lme4/tests/simulate.R | 6 lme4-1.1-13/lme4/tests/test-refit.Rout |only lme4-1.1-13/lme4/tests/testthat/test-formulaEval.R | 21 ++ lme4-1.1-13/lme4/tests/testthat/test-glmer.R | 40 ++++ lme4-1.1-13/lme4/tests/testthat/test-lmList.R | 23 ++ lme4-1.1-13/lme4/tests/testthat/test-lmer.R | 15 + lme4-1.1-13/lme4/tests/testthat/test-methods.R | 108 +++++++++++- lme4-1.1-13/lme4/tests/testthat/test-nbinom.R |only lme4-1.1-13/lme4/tests/testthat/test-rank.R | 11 + lme4-1.1-13/lme4/tests/testthat/test-start.R | 6 lme4-1.1-13/lme4/vignettes/lmer.Rnw | 1 70 files changed, 653 insertions(+), 426 deletions(-)