Sun, 30 Apr 2017

Package rootWishart updated to version 0.4.0 with previous version 0.3.0 dated 2016-07-13

Title: Distribution of Largest Root for Single and Double Wishart Settings
Description: Functions for hypothesis testing in single and double Wishart settings, based on Roy's largest root. This test statistic is especially useful in multivariate analysis. The computations are based on results by Chiani (2014) <DOI:10.1016/j.jmva.2014.04.002> and Chiani (2016) <DOI:10.1016/j.jmva.2015.10.007>. They use the fact that the CDF is related to the Pfaffian of a matrix that can be computed in a finite number of iterations. This package takes advantage of the Boost and Eigen C++ libraries to perform multi-precision linear algebra.
Author: Maxime Turgeon [aut, cre]
Maintainer: Maxime Turgeon <maxime.turgeon@mail.mcgill.ca>

Diff between rootWishart versions 0.3.0 dated 2016-07-13 and 0.4.0 dated 2017-04-30

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Package seacarb updated to version 3.1.2 with previous version 3.1.1 dated 2016-11-22

Title: Seawater Carbonate Chemistry
Description: Calculates parameters of the seawater carbonate system and assists the design of ocean acidification perturbation experiments.
Author: Jean-Pierre Gattuso [aut, cre, cph], Jean-Marie Epitalon [aut], Heloise Lavigne [aut], James Orr [aut], Bernard Gentili [ctb], Andreas Hofmann [ctb], Aurélien Proye [ctb], Karline Soetaert [ctb], James Rae [ctb]
Maintainer: Jean-Pierre Gattuso <gattuso@obs-vlfr.fr>

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Package RGCCA updated to version 2.1.1 with previous version 2.1 dated 2017-01-22

Title: Regularized and Sparse Generalized Canonical Correlation Analysis for Multiblock Data
Description: Multiblock data analysis concerns the analysis of several sets of variables (blocks) observed on the same group of individuals. The main aims of the RGCCA package are: (i) to study the relationships between blocks and (ii) to identify subsets of variables of each block which are active in their relationships with the other blocks.
Author: Arthur Tenenhaus and Vincent Guillemot
Maintainer: Arthur Tenenhaus <arthur.tenenhaus@centralesupelec.fr>

Diff between RGCCA versions 2.1 dated 2017-01-22 and 2.1.1 dated 2017-04-30

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Package hunspell updated to version 2.4 with previous version 2.3 dated 2016-12-07

Title: High-Performance Stemmer, Tokenizer, and Spell Checker for R
Description: A spell checker and morphological analyzer library designed for languages with rich morphology and complex word compounding or character encoding. The package can check and analyze individual words as well as search for incorrect words within a text, latex, html or xml document. Use the 'devtools' package to spell check R documentation with 'hunspell'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between hunspell versions 2.3 dated 2016-12-07 and 2.4 dated 2017-04-30

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Package cubfits updated to version 0.1-3 with previous version 0.1-2 dated 2016-01-24

Title: Codon Usage Bias Fits
Description: Estimating mutation and selection coefficients on synonymous codon bias usage based on models of ribosome overhead cost (ROC). Multinomial logistic regression and Markov Chain Monte Carlo are used to estimate and predict protein production rates with/without the presence of expressions and measurement errors. Work flows with examples for simulation, estimation and prediction processes are also provided with parallelization speedup. The whole framework is tested with yeast genome and gene expression data of Yassour, et al. (2009) <doi:10.1073/pnas.0812841106>.
Author: Wei-Chen Chen [aut, cre], Russell Zaretzki [aut], William Howell [aut], Cedric Landerer [aut], Drew Schmidt [aut], Michael A. Gilchrist [aut], Preston Hewgley [ctb], Students REU13 [ctb]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>

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Package aws.alexa updated to version 0.1.4 with previous version 0.1.2 dated 2016-06-02

Title: Client for the Amazon Alexa Web Information Services API
Description: Use the Amazon Alexa Web Information Services API to find information about domains, including the kind of content that they carry, how popular are they---rank and traffic history, sites linking to them, among other things. See <https://aws.amazon.com/awis/> for more information.
Author: Gaurav Sood [aut, cre], Thomas Leeper [ctb]
Maintainer: Gaurav Sood <gsood07@gmail.com>

Diff between aws.alexa versions 0.1.2 dated 2016-06-02 and 0.1.4 dated 2017-04-30

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Package timekit updated to version 0.2.0 with previous version 0.1.0 dated 2017-04-19

Title: A Collection of Tools for Working with Time Series in R
Description: Coerce between time-based tibbles ('tbl') and 'xts', 'zoo', and 'ts'. Get the time series index, signature, and summary from time series objects and time-based tibbles. Create future time series based on properties of existing time series index.
Author: Matt Dancho [aut, cre], Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>

Diff between timekit versions 0.1.0 dated 2017-04-19 and 0.2.0 dated 2017-04-30

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Package spbabel updated to version 0.4.6 with previous version 0.4.5 dated 2016-10-06

Title: Convert Spatial Data Using Tidy Tables
Description: Tools to convert from specific formats to more general forms of spatial data. Using tables to store the actual entities present in spatial data provides flexibility, and the functions here deliberately minimize the level of interpretation applied, leaving that for specific applications. Includes support for simple features, round-trip for 'Spatial' classes and long-form tables, analogous to 'ggplot2::fortify'. There is also a more 'normal form' representation that decomposes simple features and their kin to tables of objects, parts, and unique coordinates.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>

Diff between spbabel versions 0.4.5 dated 2016-10-06 and 0.4.6 dated 2017-04-30

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New package SPADAR with initial version 1.0
Package: SPADAR
Type: Package
Title: Spherical Projections of Astronomical Data
Version: 1.0
Date: 2017-04-29
Author: Alberto Krone-Martins
Maintainer: Alberto Krone-Martins <algol@sim.ul.pt>
Description: Provides easy to use functions to create all-sky grid plots of widely used astronomical coordinate systems (equatorial, ecliptic, galactic) and scatter plots of data on any of these systems including on-the-fly system conversion. It supports any type of spherical projection to the plane defined by the 'mapproj' package.
License: GPL (>= 3)
Depends: mapproj, RCEIM
LazyData: true
Packaged: 2017-04-30 19:44:16 UTC; brain
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2017-04-30 20:26:07 UTC

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Package rmcfs updated to version 1.2.5 with previous version 1.2.4 dated 2017-03-12

Title: The MCFS-ID Algorithm for Feature Selection and Interdependency Discovery
Description: MCFS-ID (Monte Carlo Feature Selection and Interdependency Discovery) is a Monte Carlo method-based tool for feature selection. It also allows for the discovery of interdependencies between the relevant features. MCFS-ID is particularly suitable for the analysis of high-dimensional, 'small n large p' transactional and biological data.
Author: Michal Draminski [aut, cre], Jacek Koronacki [aut], Julian Zubek [ctb]
Maintainer: Michal Draminski <michal.draminski@ipipan.waw.pl>

Diff between rmcfs versions 1.2.4 dated 2017-03-12 and 1.2.5 dated 2017-04-30

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New package pafdR with initial version 1.0
Package: pafdR
Title: Book Companion for Processing and Analyzing Financial Data with R
Version: 1.0
Authors@R: person("Marcelo", "Perlin", email = "marceloperlin@gmail.com", role = c("aut", "cre"))
Description: Provides access to material from the book "Processing and Analyzing Financial Data with R" by Marcelo Perlin (2017) available at <https://sites.google.com/view/pafdr/home>.
Date: 2017-04-29
Depends: R (>= 3.3.3), exams, stringr
Imports: curl, utils,stats
License: GPL-2
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown, testthat, ggplot2
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-04-29 23:08:53 UTC; marcelo
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Repository: CRAN
Date/Publication: 2017-04-30 20:22:31 UTC

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Permanent link

Package DstarM updated to version 0.2.2 with previous version 0.2.1 dated 2017-02-04

Title: Analyze Two Choice Reaction Time Data with the D*M Method
Description: A collection of functions to estimate parameters of a diffusion model via a D*M analysis. Build in models are: the Ratcliff diffusion model, the RWiener diffusion model, and Linear Ballistic Accumulator models. Custom models functions can be specified as long as they have a density function.
Author: Don van den Bergh, Stijn Verdonck, Francis Tuerlinckx
Maintainer: Don van den Bergh <donvdbergh@hotmail.com>

Diff between DstarM versions 0.2.1 dated 2017-02-04 and 0.2.2 dated 2017-04-30

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Package DDRTree updated to version 0.1.5 with previous version 0.1.4 dated 2016-07-25

Title: Learning Principal Graphs with DDRTree
Description: Provides an implementation of the framework of reversed graph embedding (RGE) which projects data into a reduced dimensional space while constructs a principal tree which passes through the middle of the data simultaneously. DDRTree shows superiority to alternatives (Wishbone, DPT) for inferring the ordering as well as the intrinsic structure of the single cell genomics data. In general, it could be used to reconstruct the temporal progression as well as bifurcation structure of any datatype.
Author: Xiaojie Qiu, Cole Trapnell, Qi Mao, Li Wang
Maintainer: Xiaojie Qiu <xqiu@uw.edu>

Diff between DDRTree versions 0.1.4 dated 2016-07-25 and 0.1.5 dated 2017-04-30

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New package congressbr with initial version 0.1.0
Package: congressbr
Type: Package
Title: Downloads, Unpacks and Tidies Legislative Data from the Brazilian Federal Senate and Chamber of Deputies
Version: 0.1.0
Author: Robert Myles McDonnell, Guilherme Jardim Duarte and Danilo Freire
Maintainer: Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>
Description: Downloads and tidies data from the Brazilian Federal Senate and Chamber of Deputies Application Programming Interfaces available at <http://legis.senado.gov.br/dadosabertos/> and <http://www.camara.leg.br/SitCamaraWS/> respectively.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.0)
Imports: dplyr (>= 0.5.0), purrr (>= 0.2.2), xml2 (>= 1.1.1), httr(>= 1.2.1), lubridate (>= 1.6.0), magrittr (>= 1.5), stringi (>= 1.1.2), tidyr (>= 0.6.1), stringr (>= 1.2.0), tibble (>= 1.3.0), pscl (>= 1.4.9)
RoxygenNote: 6.0.1
Suggests: covr, knitr, rmarkdown, ggplot2, devtools
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-04-29 22:17:31 UTC; sussa
Repository: CRAN
Date/Publication: 2017-04-30 20:21:13 UTC

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Package configr updated to version 0.2.2 with previous version 0.2.1 dated 2017-04-01

Title: An Implementation of Parsing and Writing Configuration File (JSON/INI/YAML/TOML)
Description: Implements the JSON, INI, YAML and TOML parser for R setting and writing of configuration file. The functionality of this package is similar to that of package 'config'.
Author: Jianfeng Li [aut, cre]
Maintainer: Jianfeng Li <lee_jianfeng@sjtu.edu.cn>

Diff between configr versions 0.2.1 dated 2017-04-01 and 0.2.2 dated 2017-04-30

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Package BETS updated to version 0.2.1 with previous version 0.2.0 dated 2017-04-12

Title: Brazilian Economic Time Series
Description: It provides access to and information about the most important Brazilian economic time series - from the Getulio Vargas Foundation, the Central Bank of Brazil and the Brazilian Institute of Geography and Statistics. It also presents tools for managing, analysing (e.g. generating dynamic reports with a complete analysis of a series) and exporting these time series.
Author: Pedro Costa Ferreira [aut, cre], Talitha Speranza [aut], Jonatha Azevedo [aut]
Maintainer: Pedro Costa Ferreira <pedro.guilherme@fgv.br>

Diff between BETS versions 0.2.0 dated 2017-04-12 and 0.2.1 dated 2017-04-30

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Package BART updated to version 1.2 with previous version 1.1 dated 2017-04-13

Title: Bayesian Additive Regression Trees
Description: Bayesian Additive Regression Trees (BART) provide flexible nonparametric modeling of covariates for continuous, binary and time-to-event outcomes. For more information on BART, see Chipman, George and McCulloch (2010) <doi:10.1214/09-AOAS285> and Sparapani, Logan, McCulloch and Laud (2016) <doi:10.1002/sim.6893>.
Author: Robert McCulloch <robert.e.mcculloch@gmail.com> and Rodney Sparapani <rsparapa@mcw.edu>
Maintainer: Rodney Sparapani <rsparapa@mcw.edu>

Diff between BART versions 1.1 dated 2017-04-13 and 1.2 dated 2017-04-30

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Package textreadr updated to version 0.5.1 with previous version 0.3.1 dated 2017-02-19

Title: Read Text Documents into R
Description: A small collection of convenience tools for reading text documents into R.
Author: Tyler Rinker [aut, cre], Bryan Goodrich [ctb]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>

Diff between textreadr versions 0.3.1 dated 2017-02-19 and 0.5.1 dated 2017-04-30

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Package MetaboList updated to version 1.2 with previous version 1.1 dated 2017-04-09

Title: Annotation of Metabolites from Liquid Chromatography-Mass Spectrometry Data
Description: Automatic metabolite annotation from Liquid Chromatography-Mass Spectrometry (LC-MS and LC-MS/MS) data from .mzXML files, providing an inclusion list of metabolites/fragments (Only the ion mass). The function returns the identification and quantification of the peaks presented in the sample, as well as the non-identified metabolites/fragments.
Author: Manuel David Peris Diaz
Maintainer: Manuel David Peris Diaz <madape@alumni.uv.es>

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Package icesSAG updated to version 1.3-0 with previous version 1.2-1 dated 2017-03-24

Title: Stock Assessment Graphs Database Web Services
Description: R interface to access the web services of the ICES Stock Assessment Graphs database <http://sg.ices.dk>.
Author: Colin Millar [aut, cre], Scott Large [aut], Arni Magnusson [aut]
Maintainer: Colin Millar <colin.millar@ices.dk>

Diff between icesSAG versions 1.2-1 dated 2017-03-24 and 1.3-0 dated 2017-04-30

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Package fdasrvf updated to version 1.8.1 with previous version 1.8.0 dated 2017-04-17

Title: Elastic Functional Data Analysis
Description: Performs alignment, PCA, and modeling of multidimensional and unidimensional functions using the square-root velocity framework (Srivastava et al., 2011 <arXiv:1103.3817> and Tucker et al., 2014 <DOI:10.1016/j.csda.2012.12.001>). This framework allows for elastic analysis of functional data through phase and amplitude separation.
Author: J. Derek Tucker <jdtuck@sandia.gov>
Maintainer: J. Derek Tucker <jdtuck@sandia.gov>

Diff between fdasrvf versions 1.8.0 dated 2017-04-17 and 1.8.1 dated 2017-04-30

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Package PAC updated to version 1.0.8 with previous version 1.0.7 dated 2017-03-12

Title: Partition-Assisted Clustering and Multiple Alignments of Networks
Description: Implements Partition-Assisted Clustering and Multiple Alignments of Networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set.
Author: Ye Henry Li, Dangna Li
Maintainer: Ye Henry Li <ywli@stanford.edu>

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Package glmnet updated to version 2.0-8 with previous version 2.0-5 dated 2016-03-17

Title: Lasso and Elastic-Net Regularized Generalized Linear Models
Description: Extremely efficient procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, Poisson regression and the Cox model. Two recent additions are the multiple-response Gaussian, and the grouped multinomial regression. The algorithm uses cyclical coordinate descent in a path-wise fashion, as described in the paper linked to via the URL below.
Author: Jerome Friedman, Trevor Hastie, Noah Simon, Rob Tibshirani
Maintainer: Trevor Hastie <hastie@stanford.edu>

Diff between glmnet versions 2.0-5 dated 2016-03-17 and 2.0-8 dated 2017-04-30

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Package fmbasics updated to version 0.2.0 with previous version 0.1.0 dated 2017-02-12

Title: Financial Market Building Blocks
Description: Implements basic financial market objects like currencies, currency pairs, interest rates and interest rate indices. You will be able to use Benchmark instances of these objects which have been defined using their most common conventions or those defined by International Swap Dealer Association (ISDA, <http://www2.isda.org>) legal documentation.
Author: Imanuel Costigan <i.costigan@me.com>
Maintainer: Imanuel Costigan <i.costigan@me.com>

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Package ClueR updated to version 1.2 with previous version 1.1 dated 2015-10-27

Title: Cluster Evaluation
Description: CLUster Evaluation (CLUE) is a computational method for identifying optimal number of clusters in a given time-course dataset clustered by cmeans or kmeans algorithms and subsequently identify key kinases or pathways from each cluster. Its implementation in R is called ClueR. See Readme on <https://github.com/PengyiYang/ClueR> for more details.
Author: Pengyi Yang
Maintainer: Pengyi Yang <pengyi.yang@sydney.edu.au>

Diff between ClueR versions 1.1 dated 2015-10-27 and 1.2 dated 2017-04-30

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Package bmixture updated to version 0.4 with previous version 0.3 dated 2017-02-08

Title: Bayesian Estimation for Finite Mixture of Distributions
Description: Provides statistical tools for Bayesian estimation for finite mixture of distributions, mainly mixture of Gamma, Normal and t-distributions. The package is implemented the recent improvements in Bayesian literature for the finite mixture of distributions, including Mohammadi and et al. (2013) <doi:10.1007/s00180-012-0323-3> and Mohammadi and Salehi-Rad (2012) <doi:10.1080/03610918.2011.588358>.
Author: Abdolreza Mohammadi
Maintainer: Abdolreza Mohammadi <a.mohammadi@uvt.nl>

Diff between bmixture versions 0.3 dated 2017-02-08 and 0.4 dated 2017-04-30

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