Title: R/Weka Interface
Description: An R interface to Weka (Version 3.9.1).
Weka is a collection of machine learning algorithms for data mining
tasks written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Package 'RWeka' contains the interface code, the
Weka jar is in a separate package 'RWekajars'. For more information
on Weka see <http://www.cs.waikato.ac.nz/ml/weka/>.
Author: Kurt Hornik [aut, cre],
Christian Buchta [ctb],
Torsten Hothorn [ctb],
Alexandros Karatzoglou [ctb],
David Meyer [ctb],
Achim Zeileis [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between RWeka versions 0.4-33 dated 2017-04-06 and 0.4-34 dated 2017-05-06
CHANGELOG | 5 DESCRIPTION | 6 - MD5 | 10 - NAMESPACE | 5 R/wpm.R | 271 +++++++++++++++++++++++++++++++++-------------------- inst/doc/RWeka.pdf |binary 6 files changed, 189 insertions(+), 108 deletions(-)
Title: An Image Processing Toolkit
Description: Incorporates functions for image preprocessing, filtering and image recognition. The package takes advantage of 'RcppArmadillo' to speed up computationally intensive functions. The histogram of oriented gradients descriptor is a modification of the 'findHOGFeatures' function of the 'SimpleCV' computer vision platform and the average_hash(), dhash() and phash() functions are based on the 'ImageHash' python library.
Author: Lampros Mouselimis [aut, cre],
Sight Machine [cph] (findHOGFeatures function of the SimpleCV computer
vision platform),
Johannes Buchner [cph] (average_hash, dhash and phash functions of the
ImageHash python library)
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between OpenImageR versions 1.0.5 dated 2017-04-17 and 1.0.6 dated 2017-05-06
DESCRIPTION | 10 MD5 | 106 +-- NEWS.md | 5 R/RcppExports.R | 16 R/open_image_rscript.R | 64 ++ inst/doc/The_OpenImageR_package.html | 20 man/Augmentation.Rd | 172 +++--- man/HOG.Rd | 71 +- man/HOG_apply.Rd | 103 +-- man/List_2_Array.Rd | 67 +- man/MinMaxObject.Rd | 101 +-- man/NormalizeObject.Rd | 101 +-- man/ZCAwhiten.Rd | 75 +- man/average_hash.Rd | 81 +-- man/convolution.Rd | 95 +-- man/cropImage.Rd | 85 +-- man/crop_image_secondary.Rd | 25 man/delationErosion.Rd | 77 +- man/dhash.Rd | 77 +- man/down_sample_image.Rd | 83 +-- man/edge_detection.Rd | 97 +-- man/flipImage.Rd | 63 +- man/func_chech_range.Rd | 25 man/func_transform.Rd | 25 man/gamma_correction.Rd | 69 +- man/gaussian_kernel.Rd | 25 man/hash_apply.Rd | 97 +-- man/imageShow.Rd | 55 +- man/image_thresholding.Rd | 69 +- man/invariant_hash.Rd | 125 ++-- man/laplacian_kernels.Rd | 25 man/norm_range_gauss.Rd | 25 man/phash.Rd | 83 +-- man/readImage.Rd | 61 +- man/resizeImage.Rd | 77 +- man/rgb_2gray.Rd | 63 +- man/rotateFixed.Rd | 63 +- man/rotateImage.Rd | 75 +- man/runUI.Rd | 25 man/sec_gaus_bl.Rd | 25 man/sec_resiz_array.Rd | 25 man/switch_filter.Rd | 27 - man/switch_hashing.Rd | 27 - man/switch_invariant.Rd | 25 man/translation.Rd | 71 +- man/uniform_filter.Rd | 73 +- man/writeImage.Rd | 69 +- src/RcppExports.cpp | 28 - src/hog_features.cpp | 17 src/image_hashing.cpp | 17 src/init.c | 17 src/utils.cpp | 639 ++++++++++++------------ tests/testthat/test-augmentation.R | 32 + tests/testthat/test-list_to_array_translation.R | 12 54 files changed, 1894 insertions(+), 1791 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-04 1.3-1
2017-04-30 1.3-0
2017-03-24 1.2-1
2016-12-07 1.2-0
2016-08-09 1.0
Title: Convert Spatial Data Using Tidy Tables
Description: Tools to convert from specific formats to more general forms of
spatial data. Using tables to store the actual entities present in spatial
data provides flexibility, and the functions here deliberately
minimize the level of interpretation applied, leaving that for specific
applications. Includes support for simple features, round-trip for 'Spatial' classes and long-form
tables, analogous to 'ggplot2::fortify'. There is also a more 'normal form' representation
that decomposes simple features and their kin to tables of objects, parts, and unique coordinates.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between spbabel versions 0.4.6 dated 2017-04-30 and 0.4.7 dated 2017-05-06
DESCRIPTION | 10 ++++----- MD5 | 18 ++++++++--------- NAMESPACE | 3 +- NEWS.md | 5 ++++ R/sf.r | 5 ++-- R/sfFromTable.r | 6 +++-- README.md | 21 +++++--------------- inst/doc/sfbabel.html | 48 +++++++++++++++++++++++------------------------ inst/doc/spbabel.html | 26 ++++++++++++------------- tests/testthat/test-sf.R | 2 - 10 files changed, 72 insertions(+), 72 deletions(-)
Title: Mixed Model ANOVA and Statistics for Education
Description: The main functions perform mixed models analysis by least squares
or REML by adding the function r() to formulas of lm() and glm(). A collection of
text-book statistics for higher education is also included, e.g. modifications
of the functions lm(), glm() and associated summaries from the package 'stats'.
Author: Kristian Hovde Liland [aut, cre],
Solve Sæbø [ctb],
R-Core [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between mixlm versions 1.1.5 dated 2016-10-08 and 1.2.1 dated 2017-05-06
DESCRIPTION | 16 ++++++++-------- MD5 | 16 ++++++++-------- NAMESPACE | 1 - R/glm.R | 26 +++++++++++++++----------- R/lm.R | 20 ++++++++++++++------ R/statistics.R | 8 ++++---- man/glm.Rd | 10 ++++++---- man/lm.Rd | 2 +- man/simple.glht.Rd | 2 +- 9 files changed, 57 insertions(+), 44 deletions(-)
Title: Simple Tools for Examining and Cleaning Dirty Data
Description: The main janitor functions can: perfectly format data.frame column
names; provide quick one- and two-variable tabulations (i.e., frequency
tables and crosstabs); and isolate duplicate records. Other janitor functions
nicely format the tabulation results. These tabulate-and-report functions
approximate popular features of SPSS and Microsoft Excel. This package
follows the principles of the "tidyverse" and works well with the pipe function
%>%. janitor was built with beginning-to-intermediate R users in mind and is
optimized for user-friendliness. Advanced R users can already do everything
covered here, but with janitor they can do it faster and save their thinking for
the fun stuff.
Author: Sam Firke [aut, cre],
Chris Haid [ctb],
Ryan Knight [ctb]
Maintainer: Sam Firke <samuel.firke@gmail.com>
Diff between janitor versions 0.2.1 dated 2016-10-31 and 0.3.0 dated 2017-05-06
janitor-0.2.1/janitor/tests/testthat/test-adorn-helpers.R |only janitor-0.3.0/janitor/DESCRIPTION | 24 + janitor-0.3.0/janitor/MD5 | 97 ++++--- janitor-0.3.0/janitor/NAMESPACE | 3 janitor-0.3.0/janitor/NEWS.md | 40 +++ janitor-0.3.0/janitor/R/add_totals.R | 90 +++++-- janitor-0.3.0/janitor/R/adorn_crosstab.R | 28 +- janitor-0.3.0/janitor/R/adorn_helpers.R | 14 - janitor-0.3.0/janitor/R/clean_names.R | 3 janitor-0.3.0/janitor/R/convert_to_NA.R | 18 - janitor-0.3.0/janitor/R/crosstab.R | 7 janitor-0.3.0/janitor/R/get_dupes.R | 3 janitor-0.3.0/janitor/R/janitor.R | 1 janitor-0.3.0/janitor/R/janitor_deprecated.R |only janitor-0.3.0/janitor/R/ns_to_percents.R | 26 +- janitor-0.3.0/janitor/R/remove_empties.R | 4 janitor-0.3.0/janitor/R/tabyl.R | 13 - janitor-0.3.0/janitor/R/use_first_valid_of.R | 12 janitor-0.3.0/janitor/R/utils.R |only janitor-0.3.0/janitor/README.md | 51 +--- janitor-0.3.0/janitor/build/vignette.rds |binary janitor-0.3.0/janitor/inst/doc/introduction.R | 14 - janitor-0.3.0/janitor/inst/doc/introduction.Rmd | 38 --- janitor-0.3.0/janitor/inst/doc/introduction.html | 37 --- janitor-0.3.0/janitor/man/add_totals_col.Rd | 13 - janitor-0.3.0/janitor/man/add_totals_row.Rd | 15 - janitor-0.3.0/janitor/man/adorn_crosstab.Rd | 12 janitor-0.3.0/janitor/man/adorn_totals.Rd |only janitor-0.3.0/janitor/man/clean_names.Rd | 3 janitor-0.3.0/janitor/man/convert_to_NA.Rd | 14 - janitor-0.3.0/janitor/man/crosstab.Rd | 5 janitor-0.3.0/janitor/man/excel_numeric_to_date.Rd | 1 janitor-0.3.0/janitor/man/get_dupes.Rd | 4 janitor-0.3.0/janitor/man/janitor.Rd | 1 janitor-0.3.0/janitor/man/janitor_deprecated.Rd |only janitor-0.3.0/janitor/man/ns_to_percents.Rd | 4 janitor-0.3.0/janitor/man/pipe.Rd |only janitor-0.3.0/janitor/man/remove_empty_cols.Rd | 3 janitor-0.3.0/janitor/man/remove_empty_rows.Rd | 3 janitor-0.3.0/janitor/man/tabyl.Rd | 4 janitor-0.3.0/janitor/man/top_levels.Rd | 1 janitor-0.3.0/janitor/man/use_first_valid_of.Rd | 9 janitor-0.3.0/janitor/tests/testthat/test-add-totals.R | 123 ++++++++-- janitor-0.3.0/janitor/tests/testthat/test-adorn-crosstab.R | 20 + janitor-0.3.0/janitor/tests/testthat/test-clean-NAs.R | 23 + janitor-0.3.0/janitor/tests/testthat/test-clean-names.R | 5 janitor-0.3.0/janitor/tests/testthat/test-crosstab.R | 29 ++ janitor-0.3.0/janitor/tests/testthat/test-ns-to-percents.R | 13 - janitor-0.3.0/janitor/tests/testthat/test-tabyl.R | 21 + janitor-0.3.0/janitor/tests/testthat/test-use-first-valid-of.R | 31 +- janitor-0.3.0/janitor/tests/testthat/tests-add-totals-deprecated.R |only janitor-0.3.0/janitor/tools |only janitor-0.3.0/janitor/vignettes/introduction.Rmd | 38 --- 53 files changed, 525 insertions(+), 393 deletions(-)
Title: Variable Selection for Generalized Linear Mixed Models by
L1-Penalized Estimation
Description: A variable selection approach for generalized linear mixed models by L1-penalized estimation is provided.
Author: Andreas Groll
Maintainer: Andreas Groll <groll@mathematik.uni-muenchen.de>
Diff between glmmLasso versions 1.5.0 dated 2017-04-28 and 1.5.1 dated 2017-05-06
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/glmmLasso_RE.R | 11 ++++++----- R/glmmLasso_noRE.R | 11 ++++++++--- man/glmmLasso.rd | 5 ++--- 5 files changed, 24 insertions(+), 19 deletions(-)
Title: Lasso and Elastic-Net Regularized Generalized Linear Models
Description: Extremely efficient procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, Poisson regression and the Cox model. Two recent additions are the multiple-response Gaussian, and the grouped multinomial regression. The algorithm uses cyclical coordinate descent in a path-wise fashion, as described in the paper linked to via the URL below.
Author: Jerome Friedman, Trevor Hastie, Noah Simon, Rob Tibshirani
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between glmnet versions 2.0-9 dated 2017-05-02 and 2.0-10 dated 2017-05-06
ChangeLog | 2 + DESCRIPTION | 8 ++--- MD5 | 10 +++--- inst/doc/Coxnet.pdf |binary inst/doc/glmnet_beta.pdf |binary src/glmnet_init.c | 68 +++++++++++++++++++++++++++++++++++++++++++++++ 6 files changed, 79 insertions(+), 9 deletions(-)
Title: Disease-Gene-Variant Relations Mining from the Public Databases
and Literature
Description: Captures and compiles the genes and variants related to a disease, a phenotype or a clinical feature from the public databases including HPO (Human Phenotype Ontology, <http://human-phenotype-ontology.github.io/about.html>), Orphanet <http://www.orpha.net/consor/cgi-bin/index.php>, OMIM (Online Mendelian Inheritance in Man, <http://www.omim.org>), ClinVar <http://www.ncbi.nlm.nih.gov/clinvar>, and UniProt (Universal Protein Resource, <http://www.uniprot.org>) and PubMed abstracts. HPO provides a standardized vocabulary of phenotypic abnormalities encountered in human disease. HPO currently contains approximately 11,000 terms and over 115,000 annotations to hereditary diseases. Orphanet is the reference portal for information on rare diseases and orphan drugs, whose aim is to help improve the diagnosis, care and treatment of patients with rare diseases. OMIM is a continuously updated catalog of human genes and genetic disorders and traits, with particular focus on the molecular relationship between genetic variation and phenotypic expression. ClinVar is a freely accessible, public archive of reports of the relationships among human variations and phenotypes, with supporting evidence. UniProt focuses on amino acid altering variants imported from Ensembl Variation databases. For Homo sapiens, the variants including human polymorphisms and disease mutations in the UniProt are manually curated from UniProtKB/Swiss-Prot. Additionally, PubMed provides the primary and latest source of the information. Text mining was employed to capture the information from PubMed abstracts.
Author: Zongfu Cao <caozongfu@gmail.com>; Lei Wang <isan.wong@gmail.com>
Maintainer: Zongfu Cao <caozongfu@gmail.com>
Diff between VarfromPDB versions 2.2.6 dated 2017-04-26 and 2.2.7 dated 2017-05-06
DESCRIPTION | 14 +++++++------- MD5 | 20 ++++++++++---------- R/extract_omim.R | 8 ++++---- R/extract_pubmed.R | 36 ++++++++++++++++++------------------ R/genes_add_pubmed.R | 26 ++++++++++++++++---------- R/genes_compile.R | 14 +++++++------- R/localPDB.R | 28 ++++++++++++++++++++-------- R/pheno_extract_HPO.R | 2 +- inst/doc/VarfromPDB.Rmd | 1 + inst/doc/VarfromPDB.html | 5 +++-- vignettes/VarfromPDB.Rmd | 1 + 11 files changed, 88 insertions(+), 67 deletions(-)
Title: Exact Test and Visualization of Multi-Set Intersections
Description: Identification of sets of objects with shared features is a common operation in all disciplines. Analysis of intersections among multiple sets is fundamental for in-depth understanding of their complex relationships. This package implements a theoretical framework for efficient computation of statistical distributions of multi-set intersections based upon combinatorial theory, and provides multiple scalable techniques for visualizing the intersection statistics. The statistical algorithm behind this package was published in Wang et al (2015), doi:10.1038/srep16923.
Author: Minghui Wang, Yongzhong Zhao and Bin Zhang
Maintainer: Minghui Wang <minghui.wang@mssm.edu>
Diff between SuperExactTest versions 0.99.2 dated 2015-11-10 and 0.99.3 dated 2017-05-06
DESCRIPTION | 10 +-- MD5 | 57 +++++++++++-------- NAMESPACE | 10 ++- R/intersect.R | 34 +++++++++-- R/psets.R | 126 ++++++++++++++++++++++++++++++++++++++++++-- R/supertest.R | 2 R/vis.R | 60 +++++++++++--------- build/vignette.rds |binary inst/doc/set_html.Rmd | 6 +- inst/doc/set_html.html | 75 +++++++++++++------------- man/Cancer.Rd | 2 man/GWAS.Rd | 2 man/MSET.Rd | 15 +++-- man/SuperExactTest.Rd |only man/cdiff.Rd |only man/cpsets.Rd | 15 ++--- man/deBarcode.Rd |only man/intersect.Rd | 2 man/intersectElements.Rd |only man/jacaard.Rd | 10 +-- man/msets.Rd | 14 ++-- man/plot.Rd | 29 ++++++---- man/summary.Rd | 14 ++-- man/supertest.Rd | 11 ++- src/binom.c | 5 - src/dmvhyper.c | 7 -- src/dmvhyperLog.c | 3 + src/mvhyper.h | 8 ++ src/pdiff.c |only src/pmvhyper.c | 6 +- src/pone.c |only src/registerDynamicSymbol.c |only vignettes/set_html.Rmd | 6 +- 33 files changed, 356 insertions(+), 173 deletions(-)
More information about SuperExactTest at CRAN
Permanent link
Title: Utility Functions for 'spatstat'
Description: Contains utility functions for the 'spatstat' package
which may also be useful for other purposes.
Author: Adrian Baddeley [aut, cre],
Rolf Turner [aut],
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.utils versions 1.4-1 dated 2017-03-21 and 1.6-0 dated 2017-05-06
DESCRIPTION | 8 ++++---- MD5 | 35 ++++++++++++++++++++--------------- NAMESPACE | 9 +++++++-- R/formulae.R | 15 +++++++++++++++ R/primefactors.R | 2 +- R/tapplysum.R | 4 ++-- R/utilindex.R |only R/utilseq.R | 6 +++--- R/utiltext.R | 1 + R/xycircle.R | 15 +++++++++------ R/xypolygon.R | 4 ++-- R/xysegment.R | 4 ++-- man/methods.xypolygon.Rd |only man/simplenumber.Rd |only man/spatstat.utils-internal.Rd | 28 ++++++---------------------- man/termsinformula.Rd | 16 ++++++++++++++++ man/verbalogic.Rd |only src/init.c | 4 ++++ src/matchindices.c |only src/proto.h | 6 ++++++ tests/numerical.R | 9 +++++++++ 21 files changed, 107 insertions(+), 59 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: 'NOAA' Weather Data from R
Description: Client for many 'NOAA' data sources including the 'NCDC' climate
'API' at <https://www.ncdc.noaa.gov/cdo-web/webservices/v2>, with functions for
each of the 'API' 'endpoints': data, data categories, data sets, data types,
locations, location categories, and stations. In addition, we have an interface
for 'NOAA' sea ice data, the 'NOAA' severe weather inventory, 'NOAA' Historical
Observing 'Metadata' Repository ('HOMR') data, 'NOAA' storm data via 'IBTrACS',
tornado data via the 'NOAA' storm prediction center, and more.
Author: Scott Chamberlain [aut, cre],
Brooke Anderson [ctb],
Maëlle Salmon [ctb],
Adam Erickson [ctb],
Nicholas Potter [ctb],
Joseph Stachelek [ctb],
Alex Simmons [ctb],
Karthik Ram [ctb],
Hart Edmund [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rnoaa versions 0.6.6 dated 2016-11-17 and 0.7.0 dated 2017-05-06
DESCRIPTION | 18 - LICENSE | 2 MD5 | 308 +++++++++++++++++---------------- NAMESPACE | 2 NEWS.md | 63 +++++- R/arc2.R |only R/argo.R | 24 +- R/coops.R | 175 ++++++++++++------ R/cpc.R |only R/ersst.R | 8 R/gefs.R | 19 +- R/ghcnd.R | 21 ++ R/isd.R | 43 +++- R/isd_read.R | 10 - R/ncdc.r | 217 +++++++++++++++-------- R/ncdc_datacats.r | 1 R/ncdc_datasets.r | 2 R/ncdc_datatypes.r | 4 R/ncdc_locs.r | 4 R/ncdc_locs_cats.r | 5 R/ncdc_stations.r | 6 R/onattach.R |only R/onload.R |only R/rnoaa-package.r | 4 R/seaice.r | 79 +++++--- R/swdi.r | 4 R/tornadoes.R | 10 - R/zzz.r | 16 + README.md | 175 +++++++++--------- build/vignette.rds |binary inst/doc/homr_vignette.Rmd | 132 ++++++++------ inst/doc/homr_vignette.html | 132 ++++++++------ inst/doc/ncdc_attributes.Rmd | 122 ++++++------- inst/doc/ncdc_attributes.html | 130 +++++++------ inst/doc/ncdc_vignette.Rmd | 42 +++- inst/doc/ncdc_vignette.html | 42 +++- inst/doc/ncdc_workflow.Rmd | 8 inst/doc/ncdc_workflow.html | 8 inst/doc/rnoaa_ropenaq.Rmd | 68 +++---- inst/doc/rnoaa_ropenaq.html | 98 ++++------ inst/doc/seaice_vignette.Rmd | 26 -- inst/doc/seaice_vignette.html | 28 --- inst/doc/storms_vignette.Rmd | 4 inst/doc/storms_vignette.html | 4 inst/doc/swdi_vignette.Rmd | 18 - inst/doc/swdi_vignette.html | 18 - inst/extdata/gsom.json |only inst/extdata/gsom_readme.txt |only inst/extdata/gsoy.json |only inst/extdata/gsoy_readme.txt |only inst/vign/data/measurementsDelhi.RData |binary inst/vign/figure/seaice1-1.png |binary inst/vign/figure/seaice2-1.png |binary inst/vign/figure/unnamed-chunk-9-1.png |binary inst/vign/homr_vignette.md | 132 ++++++++------ inst/vign/myfile.kmz |binary inst/vign/myfile.zip |binary inst/vign/ncdc_attributes.Rmd | 122 ++++++------- inst/vign/ncdc_attributes.md | 122 ++++++------- inst/vign/ncdc_vignette.md | 42 +++- inst/vign/ncdc_workflow.md | 8 inst/vign/rnoaa_ropenaq.Rmd | 18 - inst/vign/rnoaa_ropenaq.md | 68 +++---- inst/vign/seaice_vignette.Rmd | 13 - inst/vign/seaice_vignette.md | 26 -- inst/vign/storms_vignette.Rmd | 6 inst/vign/storms_vignette.md | 4 inst/vign/swdi_vignette.Rmd | 2 inst/vign/swdi_vignette.md | 18 - man/arc2.Rd |only man/argo.Rd | 9 man/autoplot.meteo_coverage.Rd | 1 man/buoy.Rd | 3 man/check_response.Rd | 1 man/check_response_swdi.Rd | 1 man/coops.Rd | 101 ++++++---- man/cpc_prcp.Rd |only man/deg2rad.Rd | 1 man/erddap_clear_cache-defunct.Rd | 1 man/erddap_data-defunct.Rd | 1 man/erddap_datasets-defunct.Rd | 1 man/erddap_grid-defunct.Rd | 1 man/erddap_info-defunct.Rd | 1 man/erddap_search-defunct.Rd | 1 man/erddap_table-defunct.Rd | 1 man/ersst.Rd | 8 man/fipscodes.Rd | 1 man/gefs.Rd | 26 +- man/ghcnd.Rd | 14 - man/ghcnd_search.Rd | 7 man/ghcnd_splitvars.Rd | 1 man/ghcnd_states.Rd | 3 man/ghcnd_stations.Rd | 1 man/homr.Rd | 1 man/homr_definitions.Rd | 1 man/is.ncdc_data.Rd | 3 man/isd.Rd | 31 ++- man/isd_read.Rd | 10 - man/isd_stations.Rd | 2 man/isd_stations_search.Rd | 1 man/meteo_clear_cache.Rd | 1 man/meteo_coverage.Rd | 1 man/meteo_distance.Rd | 1 man/meteo_nearby_stations.Rd | 9 man/meteo_process_geographic_data.Rd | 1 man/meteo_pull_monitors.Rd | 7 man/meteo_show_cache.Rd | 1 man/meteo_spherical_distance.Rd | 1 man/meteo_tidy_ghcnd.Rd | 7 man/meteo_tidy_ghcnd_element.Rd | 1 man/ncdc.Rd | 204 ++++++++++++--------- man/ncdc_combine.Rd | 1 man/ncdc_datacats.Rd | 4 man/ncdc_datasets.Rd | 25 +- man/ncdc_datatypes.Rd | 27 +- man/ncdc_leg_data-defunct.Rd | 1 man/ncdc_leg_site_info-defunct.Rd | 1 man/ncdc_leg_sites-defunct.Rd | 1 man/ncdc_leg_variables-defunct.Rd | 1 man/ncdc_locs.Rd | 8 man/ncdc_locs_cats.Rd | 9 man/ncdc_plot.Rd | 1 man/ncdc_stations.Rd | 29 +-- man/ncdc_theme.Rd | 1 man/noaa-defunct.Rd | 1 man/noaa_combine-defunct.Rd | 1 man/noaa_datacats-defunct.Rd | 1 man/noaa_datasets-defunct.Rd | 1 man/noaa_datatypes-defunct.Rd | 1 man/noaa_locs-defunct.Rd | 1 man/noaa_locs_cats-defunct.Rd | 1 man/noaa_plot-defunct.Rd | 1 man/noaa_seaice-defunct.Rd | 1 man/noaa_stations-defunct.Rd | 1 man/readshpfile.Rd | 1 man/rnoaa-package.Rd | 8 man/seaice.Rd | 4 man/seaiceeurls.Rd | 9 man/storm_columns.Rd | 1 man/storm_names.Rd | 1 man/storms.Rd | 6 man/swdi.Rd | 1 man/theme_ice.Rd | 1 man/tornadoes.Rd | 5 man/type_summ.Rd | 9 man/vis_miss.Rd | 1 tests/testthat/test-coops.R | 39 +++- tests/testthat/test-cpc_prcp.R |only tests/testthat/test-ghcnd.R | 8 tests/testthat/test-ghcnd_splitvars.R | 1 tests/testthat/test-isd_read.R | 6 tools |only vignettes/homr_vignette.Rmd | 132 ++++++++------ vignettes/ncdc_attributes.Rmd | 122 ++++++------- vignettes/ncdc_vignette.Rmd | 42 +++- vignettes/ncdc_workflow.Rmd | 8 vignettes/rnoaa_ropenaq.Rmd | 68 +++---- vignettes/seaice_vignette.Rmd | 26 -- vignettes/storms_vignette.Rmd | 4 vignettes/swdi_vignette.Rmd | 18 - 160 files changed, 2127 insertions(+), 1662 deletions(-)
Title: R Package for Fitting the Multinomial Probit Model
Description: Fits the Bayesian multinomial probit model via Markov chain
Monte Carlo. The multinomial probit model is often used to analyze
the discrete choices made by individuals recorded in survey data.
Examples where the multinomial probit model may be useful include the
analysis of product choice by consumers in market research and the
analysis of candidate or party choice by voters in electoral studies.
The MNP package can also fit the model with different choice sets for
each individual, and complete or partial individual choice orderings
of the available alternatives from the choice set. The estimation is
based on the efficient marginal data augmentation algorithm that is
developed by Imai and van Dyk (2005). ``A Bayesian Analysis of the
Multinomial Probit Model Using the Data Augmentation,'' Journal of
Econometrics, Vol. 124, No. 2 (February), pp. 311-334.
<DOI:10.1016/j.jeconom.2004.02.002> Detailed examples are given in
Imai and van Dyk (2005). ``MNP: R Package for Fitting the Multinomial
Probit Model.'' Journal of Statistical Software, Vol. 14, No. 3 (May),
pp. 1-32. <DOI:10.18637/jss.v014.i03>.
Author: Kosuke Imai [aut, cre],
David van Dyk [aut],
Jin Hubert [ctb]
Maintainer: Kosuke Imai <kimai@princeton.edu>
Diff between MNP versions 2.6-4 dated 2013-06-09 and 3.0-1 dated 2017-05-06
MNP-2.6-4/MNP/MNP.pdf |only MNP-3.0-1/MNP/ChangeLog |only MNP-3.0-1/MNP/DESCRIPTION | 56 ++-- MNP-3.0-1/MNP/MD5 | 54 ++-- MNP-3.0-1/MNP/NAMESPACE | 4 MNP-3.0-1/MNP/R/coef.mnp.R | 23 + MNP-3.0-1/MNP/R/cov.mnp.R | 21 + MNP-3.0-1/MNP/R/detergent.R |only MNP-3.0-1/MNP/R/japan.R |only MNP-3.0-1/MNP/R/mnp.R | 182 ++++++++++++++ MNP-3.0-1/MNP/R/predict.mnp.R | 73 +++++ MNP-3.0-1/MNP/R/print.summary.mnp.R | 13 + MNP-3.0-1/MNP/R/summary.mnp.R | 25 + MNP-3.0-1/MNP/README.md |only MNP-3.0-1/MNP/build |only MNP-3.0-1/MNP/inst |only MNP-3.0-1/MNP/man/coef.mnp.Rd | 57 +--- MNP-3.0-1/MNP/man/cov.mnp.Rd | 54 +--- MNP-3.0-1/MNP/man/detergent.Rd | 43 +-- MNP-3.0-1/MNP/man/japan.Rd | 42 +-- MNP-3.0-1/MNP/man/mnp.Rd | 367 +++++++++++++---------------- MNP-3.0-1/MNP/man/predict.mnp.Rd | 186 ++++++-------- MNP-3.0-1/MNP/man/print.summary.mnp.Rd |only MNP-3.0-1/MNP/man/summary.mnp.Rd | 68 ++--- MNP-3.0-1/MNP/src/MNP.c | 1 MNP-3.0-1/MNP/src/rand.c | 3 MNP-3.0-1/MNP/src/registerDynamicSymbols.c |only MNP-3.0-1/MNP/src/subroutines.c | 1 MNP-3.0-1/MNP/src/vector.c | 1 MNP-3.0-1/MNP/vignettes |only 30 files changed, 779 insertions(+), 495 deletions(-)
Title: Read European Eddy Fluxes CSV Files
Description: The European Eddy Fluxes Database Cluster distributes fluxes of different Green House Gases measured mainly using the eddy covariance technique acquired in sites involved in EU projects but also single sites in Europe, Africa and others continents that decided to share their measurements in the database <http://gaia.agraria.unitus.it>. The package provides two functions to load and row-wise bind CSV files distributed by the database. Currently only L2, L3, and L4 (L=Level), half-hourly and daily (aggregation) files are supported.
Author: Marco Bascietto [aut, cre]
Maintainer: Marco Bascietto <marco.bascietto@crea.gov.it>
Diff between efreadr versions 0.1.1 dated 2016-03-08 and 0.2.2 dated 2017-05-06
efreadr-0.1.1/efreadr/inst/extdata |only efreadr-0.2.2/efreadr/DESCRIPTION | 16 +- efreadr-0.2.2/efreadr/MD5 | 30 ++--- efreadr-0.2.2/efreadr/NAMESPACE | 12 +- efreadr-0.2.2/efreadr/NEWS | 11 + efreadr-0.2.2/efreadr/R/efreadr.R | 125 ++++++++++++++++++++ efreadr-0.2.2/efreadr/R/read_ef_file.R | 84 +++++++++----- efreadr-0.2.2/efreadr/R/read_ef_files.R | 161 ++++++++++++++++----------- efreadr-0.2.2/efreadr/R/utils.R |only efreadr-0.2.2/efreadr/README.md | 3 efreadr-0.2.2/efreadr/inst/examples |only efreadr-0.2.2/efreadr/man/efreadr-package.Rd | 7 - efreadr-0.2.2/efreadr/man/read_ef_file.Rd | 27 +++- efreadr-0.2.2/efreadr/man/read_ef_files.Rd | 35 ++--- 14 files changed, 363 insertions(+), 148 deletions(-)