Title: A Model Object Framework for Regression Analysis
Description: A utility library to facilitate the generalization of statistical methods built on a regression framework. Package developers can use 'modelObj' methods to initiate a regression analysis without concern for the details of the regression model and the method to be used to obtain parameter estimates. The specifics of the regression step are left to the user to define when calling the function. The user of a function developed within the 'modelObj' framework creates as input a 'modelObj' that contains the model and the R methods to be used to obtain parameter estimates and to obtain predictions. In this way, a user can easily go from linear to non-linear models within the same package.
Author: Shannon T. Holloway
Maintainer: Shannon T. Holloway <sthollow@ncsu.edu>
Diff between modelObj versions 1.0 dated 2015-06-10 and 3.0 dated 2017-05-12
modelObj-1.0/modelObj/R/All_Classes.R |only modelObj-1.0/modelObj/R/methods-coef.R |only modelObj-1.0/modelObj/R/methods-fit.R |only modelObj-1.0/modelObj/R/methods-plot.R |only modelObj-1.0/modelObj/R/methods-predict.R |only modelObj-1.0/modelObj/R/methods-print.R |only modelObj-1.0/modelObj/R/methods-residuals.R |only modelObj-1.0/modelObj/R/methods-show.R |only modelObj-1.0/modelObj/R/methods-summary.R |only modelObj-3.0/modelObj/DESCRIPTION | 8 modelObj-3.0/modelObj/MD5 | 61 ++-- modelObj-3.0/modelObj/NAMESPACE | 4 modelObj-3.0/modelObj/R/A00_generics.R |only modelObj-3.0/modelObj/R/A01_methodObj.R |only modelObj-3.0/modelObj/R/A02_methodObjPredict.R |only modelObj-3.0/modelObj/R/A03_methodObjSolver.R |only modelObj-3.0/modelObj/R/A04_methodObjSolverFormula.R |only modelObj-3.0/modelObj/R/A05_methodObjSolverXY.R |only modelObj-3.0/modelObj/R/A06_modelObj.R |only modelObj-3.0/modelObj/R/A07_modelObjFormula.R |only modelObj-3.0/modelObj/R/A08_modelObjXY.R |only modelObj-3.0/modelObj/R/A09_modelObjFit.R |only modelObj-3.0/modelObj/R/modelObj.R | 277 +++++++++--------- modelObj-3.0/modelObj/R/warnMsg.R | 6 modelObj-3.0/modelObj/build/vignette.rds |binary modelObj-3.0/modelObj/inst/doc/modelObj.R | 54 +-- modelObj-3.0/modelObj/inst/doc/modelObj.Rnw | 285 +++++++++++++++---- modelObj-3.0/modelObj/inst/doc/modelObj.pdf |binary modelObj-3.0/modelObj/man/methods-coef.Rd | 12 modelObj-3.0/modelObj/man/methods-fit.Rd | 16 - modelObj-3.0/modelObj/man/methods-fitObject.Rd | 6 modelObj-3.0/modelObj/man/methods-model.Rd | 9 modelObj-3.0/modelObj/man/methods-predict.Rd | 14 modelObj-3.0/modelObj/man/methods-predictor.Rd | 11 modelObj-3.0/modelObj/man/methods-predictorArgs.Rd | 3 modelObj-3.0/modelObj/man/methods-solverArgs_-.Rd | 3 modelObj-3.0/modelObj/man/modelObj-class.Rd | 4 modelObj-3.0/modelObj/man/modelObj-package.Rd | 6 modelObj-3.0/modelObj/man/modelObj.Rd | 47 +-- modelObj-3.0/modelObj/man/modelObjFit-class.Rd | 4 modelObj-3.0/modelObj/vignettes/modelObj.Rnw | 285 +++++++++++++++---- 41 files changed, 736 insertions(+), 379 deletions(-)
Title: Mediation Analysis for Generalized Linear Models Using the
Difference Method
Description: Causal mediation analysis for a single exposure/treatment and a
single mediator, both allowed to be either continuous or binary. The package
implements the difference method and provide point and interval estimates as
well as testing for the natural direct and indirect effects and the mediation
proportion.
Author: Daniel Nevo [aut, cre]
Maintainer: Daniel Nevo <danielnevo@gmail.com>
Diff between GEEmediate versions 1.0.0 dated 2016-11-18 and 1.1.1 dated 2017-05-12
DESCRIPTION | 17 ++++---- MD5 | 14 +++---- NAMESPACE | 25 +++++++----- R/DupliData.R | 106 +++++++++++++++++++++++++++++++----------------------- R/GEEmediate.R | 29 ++++++-------- R/GEEmediateFit.R | 12 +++--- R/Methods.R | 65 ++++++++++++++++++++++++++++----- man/GEEmediate.Rd | 4 +- 8 files changed, 170 insertions(+), 102 deletions(-)
Title: Immunoglobulin Somatic Hypermutation Analysis
Description: Provides a computational framework for Bayesian estimation of
antigen-driven selection in immunoglobulin (Ig) sequences, providing an
intuitive means of analyzing selection by quantifying the degree of
selective pressure. Also provides tools to profile mutations in Ig
sequences, build models of somatic hypermutation (SHM) in Ig sequences,
and make model-dependent distance comparisons of Ig repertoires.
Author: Mohamed Uduman [aut],
Gur Yaari [aut],
Namita Gupta [aut],
Jason Vander Heiden [aut, cre],
Ang Cui [ctb],
Susanna Marquez [ctb],
Julian Zhou [ctb],
Nima Nouri [ctb],
Steven Kleinstein [aut, cph]
Maintainer: Jason Vander Heiden <jason.vanderheiden@yale.edu>
Diff between shazam versions 0.1.5 dated 2017-03-24 and 0.1.6 dated 2017-05-12
DESCRIPTION | 16 ++--- MD5 | 38 ++++++------ NAMESPACE | 9 -- NEWS.md | 16 +++++ R/Baseline.R | 58 ++++++++++-------- R/Core.R | 2 R/DistToNearest.R | 70 ++++++++++++---------- R/MutationProfiling.R | 114 +++++++++++++++++++++++++----------- R/Shazam.R | 3 R/TargetingModels.R | 6 - build/vignette.rds |binary inst/doc/Baseline-Vignette.R | 6 - inst/doc/Baseline-Vignette.Rmd | 6 - inst/doc/Baseline-Vignette.pdf |binary inst/doc/DistToNearest-Vignette.pdf |binary inst/doc/Mutation-Vignette.R |only inst/doc/Mutation-Vignette.Rmd |only inst/doc/Mutation-Vignette.pdf |only inst/doc/Targeting-Vignette.pdf |binary man/collapseClones.Rd | 4 - vignettes/Baseline-Vignette.Rmd | 6 - vignettes/Mutation-Vignette.Rmd |only 22 files changed, 217 insertions(+), 137 deletions(-)
Title: A Toolbox for Model-Based Optimization of Expensive Black-Box
Functions
Description: Flexible and comprehensive R toolbox for model-based optimization
('MBO'), also known as Bayesian optimization. It is designed for both single-
and multi-objective optimization with mixed continuous, categorical and
conditional parameters. The machine learning toolbox 'mlr' provide dozens
of regression learners to model the performance of the target algorithm with
respect to the parameter settings. It provides many different infill criteria
to guide the search process. Additional features include multipoint batch
proposal, parallel execution as well as visualization and sophisticated
logging mechanisms, which is especially useful for teaching and understanding
of algorithm behavior. 'mlrMBO' is implemented in a modular fashion, such that
single components can be easily replaced or adapted by the user for specific use
cases.
Author: Bernd Bischl [aut],
Jakob Bossek [aut],
Jakob Richter [aut, cre],
Daniel Horn [aut],
Michel Lang [aut],
Janek Thomas [aut]
Maintainer: Jakob Richter <code@jakob-r.de>
Diff between mlrMBO versions 1.0.0 dated 2017-03-12 and 1.1.0 dated 2017-05-12
mlrMBO-1.0.0/mlrMBO/inst/doc/mixed_space_optimization.R |only mlrMBO-1.0.0/mlrMBO/inst/doc/mixed_space_optimization.Rmd |only mlrMBO-1.0.0/mlrMBO/inst/doc/mixed_space_optimization.html |only mlrMBO-1.0.0/mlrMBO/inst/doc/noisy_optimization.R |only mlrMBO-1.0.0/mlrMBO/inst/doc/noisy_optimization.Rmd |only mlrMBO-1.0.0/mlrMBO/inst/doc/noisy_optimization.html |only mlrMBO-1.0.0/mlrMBO/inst/doc/parallelization.R |only mlrMBO-1.0.0/mlrMBO/inst/doc/parallelization.Rmd |only mlrMBO-1.0.0/mlrMBO/inst/doc/parallelization.html |only mlrMBO-1.0.0/mlrMBO/vignettes/mixed_space_optimization.Rmd |only mlrMBO-1.0.0/mlrMBO/vignettes/noisy_optimization.Rmd |only mlrMBO-1.0.0/mlrMBO/vignettes/parallelization.Rmd |only mlrMBO-1.1.0/mlrMBO/DESCRIPTION | 6 mlrMBO-1.1.0/mlrMBO/LICENSE | 2 mlrMBO-1.1.0/mlrMBO/MD5 | 67 ++--- mlrMBO-1.1.0/mlrMBO/NEWS.md | 8 mlrMBO-1.1.0/mlrMBO/R/checkLearner.R | 2 mlrMBO-1.1.0/mlrMBO/R/exampleRun.R | 6 mlrMBO-1.1.0/mlrMBO/R/exampleRunMultiObj.R | 6 mlrMBO-1.1.0/mlrMBO/R/infillOptFocus.R | 4 mlrMBO-1.1.0/mlrMBO/R/infill_crits.R | 4 mlrMBO-1.1.0/mlrMBO/R/makeMBOLearner.R | 8 mlrMBO-1.1.0/mlrMBO/R/proposePoints.R | 41 +-- mlrMBO-1.1.0/mlrMBO/R/renderExampleRunPlotSingleCrit.R | 2 mlrMBO-1.1.0/mlrMBO/R/renderExampleRunPlotSingleCrit1d.R | 2 mlrMBO-1.1.0/mlrMBO/R/setMBOControlMultiObj.R | 3 mlrMBO-1.1.0/mlrMBO/R/term_conds.R | 2 mlrMBO-1.1.0/mlrMBO/README.md | 81 ++++-- mlrMBO-1.1.0/mlrMBO/build/vignette.rds |binary mlrMBO-1.1.0/mlrMBO/inst/CITATION |only mlrMBO-1.1.0/mlrMBO/inst/doc/mlrMBO.R | 14 + mlrMBO-1.1.0/mlrMBO/inst/doc/mlrMBO.Rmd | 80 ++++-- mlrMBO-1.1.0/mlrMBO/inst/doc/mlrMBO.html | 159 +++++++------ mlrMBO-1.1.0/mlrMBO/man/exampleRun.Rd | 3 mlrMBO-1.1.0/mlrMBO/man/exampleRunMultiObj.Rd | 3 mlrMBO-1.1.0/mlrMBO/man/infillcrits.Rd | 4 mlrMBO-1.1.0/mlrMBO/man/makeMBOLearner.Rd | 5 mlrMBO-1.1.0/mlrMBO/tests/testthat/Rplots.pdf |only mlrMBO-1.1.0/mlrMBO/tests/testthat/test_mbo_km.R | 6 mlrMBO-1.1.0/mlrMBO/vignettes/mlrMBO.Rmd | 80 ++++-- mlrMBO-1.1.0/mlrMBO/vignettes/supplementary |only 41 files changed, 349 insertions(+), 249 deletions(-)
Title: Add CSS Loading Animations to 'shiny' Outputs
Description: Create a lightweight Shiny wrapper for the css-loaders created by Luke Hass <https://github.com/lukehaas/css-loaders>. Wrapping a Shiny output will automatically show a loader when the output is (re)calculating.
Author: Andras Sali [aut, cre] (Creator of Shiny-wrapper code),
Luke Hass [ctb, cph] (Author of included CSS loader code)
Maintainer: Andras Sali <andras.sali@alphacruncher.hu>
Diff between shinycssloaders versions 0.1.0 dated 2017-05-09 and 0.2.0 dated 2017-05-12
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 13 ++++++++++++- R/withSpinner.R | 10 +++++++++- README.md | 12 +++++++++++- inst/assets/spinner.css | 17 ++++++++++++++--- inst/assets/spinner.js | 20 ++++++++++---------- man/withSpinner.Rd | 5 ++++- 8 files changed, 70 insertions(+), 27 deletions(-)
More information about shinycssloaders at CRAN
Permanent link
Title: Reliability Coefficients
Description: Derives point estimates with confidence intervals for Bennett et als S, Cohen's kappa, Conger's kappa, Fleiss' kappa, Gwet's AC, intraclass correlation coefficients, Krippendorff's alpha, Scott's pi, the standard error of measurement, and weighted kappa.
Author: Riccardo Lo Martire
Maintainer: Riccardo Lo Martire <Riccardo.Lo.Martire@ki.se>
Diff between rel versions 1.3.0 dated 2017-03-21 and 1.3.1 dated 2017-05-12
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NAMESPACE | 2 +- NEWS | 6 ++++++ R/plot.rel.R | 11 +++++++++-- R/sem.R | 52 +++++++++++++++++++++++++++++++++++++--------------- R/summary.rel.R | 3 ++- man/sem.Rd | 10 +++++++--- 8 files changed, 72 insertions(+), 32 deletions(-)
Title: Person Parameter Estimation
Description: The PP package includes estimation of (MLE, WLE, MAP, EAP, ROBUST)
person parameters for the 1,2,3,4-PL model and the GPCM (generalized
partial credit model). The parameters are estimated under the assumption
that the item parameters are known and fixed. The package is useful e.g. in
the case that items from an item pool / item bank with known item parameters
are administered to a new population of test-takers and an ability
estimation for every test-taker is needed.
Author: Reif Manuel [cre, aut],
Steinfeld Jan [aut]
Maintainer: Reif Manuel <manuel.reif@gmail.com>
Diff between PP versions 0.5.3 dated 2014-09-04 and 0.6.1 dated 2017-05-12
DESCRIPTION | 21 - MD5 | 78 +++-- NAMESPACE | 13 R/Infit.R |only R/Infitpoly.R |only R/Outfit.R |only R/Outfitpoly.R |only R/PP.R | 32 +- R/PP_4pl.R | 12 R/PP_gpcm.R | 4 R/PPall.R | 2 R/PPass.R |only R/Pfit.R |only R/RcppExports.R | 2 R/dataRd.R | 36 ++ R/jackknife.R |only R/lz.R |only R/lzstar.R |only R/stdrdize_hist.R | 7 build/vignette.rds |binary data/pp_amt.rda |only inst/doc/intro_pfit.R |only inst/doc/intro_pfit.Rmd |only inst/doc/intro_pfit.html |only inst/doc/intro_pp.R | 15 - inst/doc/intro_pp.Rmd | 45 ++- inst/doc/intro_pp.html | 503 +++++++++++++------------------------- inst/doc/ppass_par_and_fit.R |only inst/doc/ppass_par_and_fit.Rmd |only inst/doc/ppass_par_and_fit.html |only man/Jkpp.Rd | 42 +-- man/PP.Rd | 29 +- man/PP_4pl.Rd | 28 +- man/PP_gpcm.Rd | 20 - man/PPall.Rd | 12 man/PPass.Rd |only man/PV.Rd | 14 - man/findmodel.Rd | 10 man/fourpl_df.Rd | 4 man/pfit.Rd |only man/pp_amt.Rd |only man/sim_4pl.Rd | 10 man/sim_gpcm.Rd | 4 src/GPCM4PL_stuff.cpp | 113 ++++++++ src/RcppExports.cpp | 526 ++++++++++++++++------------------------ src/packagename_init.c |only vignettes/intro_pfit.Rmd |only vignettes/intro_pfit.md |only vignettes/intro_pp.Rmd | 45 ++- vignettes/intro_pp.md |only vignettes/literatur.bib |only vignettes/ppass_par_and_fit.Rmd |only vignettes/ppass_par_and_fit.md |only 53 files changed, 819 insertions(+), 808 deletions(-)
Title: Joint Confidence Regions
Description: Computing and plotting joint confidence regions and intervals. Regions include classical ellipsoids, minimum-volume or minimum-length regions, and an empirical Bayes region. Intervals include the TOST procedure with ordinary or expanded intervals and a fixed-sequence procedure. Such regions and intervals are useful e.g., for the assessment of multi-parameter (bio-)equivalence. Joint confidence regions for the mean and variance of a normal distribution are available as well.
Author: Philip Pallmann [aut, cre]
Maintainer: Philip Pallmann <p.pallmann@lancaster.ac.uk>
Diff between jocre versions 0.3.1 dated 2017-02-07 and 0.3.3 dated 2017-05-12
DESCRIPTION | 12 +++++------ MD5 | 18 ++++++++--------- NAMESPACE | 3 +- R/cset.R | 54 +++++++++++++++++++++++++++++++++++++++++++++------ R/helpers.R | 21 +++++++++++++------ inst/CITATION | 6 ++--- inst/NEWS | 20 ++++++++++++++++-- man/cset.Rd | 7 +++--- man/helpers.Rd | 3 +- man/jocre-package.Rd | 4 +-- 10 files changed, 107 insertions(+), 41 deletions(-)
Title: Isotonic Proportional Hazards Model
Description: Nonparametric estimation of an isotonic covariate effect for proportional hazards model.
Author: Yunro Chung [cre], Anastasia Ivanova, Michael G. Hudgens and Jason P. Fine
Maintainer: Yunro Chung <ychung@fredhutch.org>
Diff between isoph versions 1.0 dated 2017-04-26 and 1.1 dated 2017-05-12
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/isoph.ti.R | 35 ++++++++++++++++++----------------- man/isoph-package.Rd | 4 ++-- 4 files changed, 27 insertions(+), 26 deletions(-)
Title: Tools for Highfrequency Data Analysis
Description: Provide functionality to manage, clean and match highfrequency
trades and quotes data, calculate various liquidity measures, estimate and
forecast volatility, and investigate microstructure noise and intraday
periodicity.
Author: Kris Boudt [aut, cre], Jonathan Cornelissen [aut], Scott Payseur [aut],
Giang Nguyen [ctb], Maarten Schermer [ctb]
Maintainer: Kris Boudt
<Kris.Boudt@econ.kuleuven.be>
Diff between highfrequency versions 0.5 dated 2017-02-15 and 0.5.1 dated 2017-05-12
DESCRIPTION | 20 MD5 | 34 - NAMESPACE | 9 R/AJjumptest.R |only R/BNSjumptest.R |only R/JOjumptest.R |only R/heavyModelC.R |only R/highfrequencyGSOC.R | 1116 --------------------------------------- R/realized.R | 73 +- data/lltc.xts.rda |binary data/realized_library.rda |binary data/sample_5minprices.rda |binary data/sample_5minprices_jumps.rda |binary data/sample_qdata.rda |binary data/sample_qdataraw.rda |binary data/sample_real5minprices.rda |binary data/sample_tdata.rda |binary data/sample_tdataraw.rda |binary data/sbux.xts.rda |binary inst/doc/highfrequency.pdf |binary 20 files changed, 80 insertions(+), 1172 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-11-15 0.1.0
Title: Calculate Pairwise Distances
Description: A common framework for calculating distance matrices.
Author: Nello Blaser [aut, cre]
Maintainer: Nello Blaser <nello.blaser@uib.no>
Diff between rdist versions 0.0.1 dated 2017-03-05 and 0.0.2 dated 2017-05-12
DESCRIPTION | 6 - MD5 | 37 ++++---- NAMESPACE | 18 +-- NEWS.md |only R/RcppExports.R | 174 +++++++++++++++++++------------------- R/correlation_distances.R | 74 ++++++++-------- R/distance_functions.r | 163 +++++++++++++++++------------------ R/rdist-package.r | 68 +++++++------- README.md | 46 +++++----- man/rdist.Rd | 98 ++++++++++----------- src/jaccard.cpp | 22 ++++ tests/testthat.R | 9 - tests/testthat/test-canberra.R | 32 +++--- tests/testthat/test-correlation.R | 98 ++++++++++----------- tests/testthat/test-euclidean.R | 56 ++++++++---- tests/testthat/test-hamming.R | 48 +++++----- tests/testthat/test-jaccard.R | 54 ++++++----- tests/testthat/test-manhattan.R | 32 +++--- tests/testthat/test-maximum.R | 32 +++--- tests/testthat/test-minkowski.R | 88 +++++++++---------- 20 files changed, 603 insertions(+), 552 deletions(-)
Title: Interface to the OpenCage API
Description: Tool for accessing the OpenCage API, which provides forward
geocoding (from placename to longitude and latitude) and reverse geocoding (from
longitude and latitude to placename).
Author: Maëlle Salmon [aut, cre],
Noam Ross [ctb],
Julia Silge [ctb] (Julia Silge reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/36.)
Maintainer: Maëlle Salmon <maelle.salmon@yahoo.se>
Diff between opencage versions 0.1.0 dated 2016-05-12 and 0.1.2 dated 2017-05-12
DESCRIPTION | 14 MD5 | 31 NEWS.md |only R/forward_geocoding.R | 20 R/reverse_geocoding.R | 26 R/utils.R | 38 build/vignette.rds |binary inst/doc/opencage.Rmd | 14 inst/doc/opencage.html | 2414 +++++++++++++++++++---------- man/code_message.Rd | 1 man/countrycodes.Rd | 1 man/languagecodes.Rd | 1 man/opencage_forward.Rd | 8 man/opencage_key.Rd | 1 man/opencage_reverse.Rd | 8 tests/testthat/test-opencage_query_check.R | 17 vignettes/opencage.Rmd | 14 17 files changed, 1776 insertions(+), 832 deletions(-)
Title: Working with Frequency Tables
Description: The frequency of a particular data value is the number of times it
occurs. A frequency table is a table of values with their corresponding
frequencies. Frequency weights are integer numbers that indicate how many
cases each case represents. This package provides some functions to work
with such type of collected data.
Author: Emilio Torres-Manzanera
Maintainer: Emilio Torres-Manzanera <torres@uniovi.es>
Diff between freqweights versions 1.0.3 dated 2017-04-18 and 1.0.4 dated 2017-05-12
freqweights-1.0.3/freqweights/R/clarachunk.R |only freqweights-1.0.3/freqweights/man/clarachunk.Rd |only freqweights-1.0.4/freqweights/DESCRIPTION | 10 ++--- freqweights-1.0.4/freqweights/MD5 | 28 ++++++--------- freqweights-1.0.4/freqweights/NAMESPACE | 2 - freqweights-1.0.4/freqweights/NEWS | 6 +++ freqweights-1.0.4/freqweights/man/biglmfreq.Rd | 4 +- freqweights-1.0.4/freqweights/man/evaldp.Rd | 1 freqweights-1.0.4/freqweights/man/freqweights-package.Rd | 3 - freqweights-1.0.4/freqweights/man/hclustvfreq.Rd | 3 - freqweights-1.0.4/freqweights/man/lmfreq.Rd | 16 +++++--- freqweights-1.0.4/freqweights/man/make.readchunk.Rd | 1 freqweights-1.0.4/freqweights/man/pcafreq.Rd | 3 - freqweights-1.0.4/freqweights/man/quickround.Rd | 1 freqweights-1.0.4/freqweights/man/statsfreq.Rd | 24 +++++++----- freqweights-1.0.4/freqweights/man/tablefreq.Rd | 1 16 files changed, 55 insertions(+), 48 deletions(-)
More information about EpistemicGameTheory at CRAN
Permanent link
Title: A Simple HTTP Server to Serve Static Files or Dynamic Documents
Description: Start an HTTP server in R to serve static files, or dynamic
documents that can be converted to HTML files (e.g., R Markdown) under a
given directory.
Author: Yihui Xie [aut, cre],
Carson Sievert [ctb],
Jesse Anderson [ctb],
Ramnath Vaidyanathan [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between servr versions 0.5 dated 2016-12-10 and 0.6 dated 2017-05-12
DESCRIPTION | 10 ++++---- MD5 | 32 +++++++++++++-------------- NAMESPACE | 2 + NEWS | 14 ++++++++++++ R/dynamic.R | 7 +++--- R/notebook.R | 4 +-- R/static.R | 59 +++++++++++++++++++++++++++++++++------------------ R/utils.R | 9 +++++++ R/vignette.R | 4 +-- man/daemon_stop.Rd | 3 +- man/dynamic_site.Rd | 3 +- man/httd.Rd | 1 man/make.Rd | 1 man/notebook.Rd | 1 man/serve_example.Rd | 1 man/server_config.Rd | 1 man/vign.Rd | 1 17 files changed, 103 insertions(+), 50 deletions(-)
Title: Bayesian Model Averaging
Description: Package for Bayesian model averaging and variable selection for linear models,
generalized linear models and survival models (cox
regression).
Author: Adrian Raftery <raftery@uw.edu>, Jennifer Hoeting,
Chris Volinsky, Ian Painter, Ka Yee Yeung
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between BMA versions 3.18.6 dated 2015-11-06 and 3.18.7 dated 2017-05-12
ChangeLog | 228 ++++++------- DESCRIPTION | 11 MD5 | 9 NAMESPACE | 2 R/mc3.R | 957 ++++++++++++++++++++++++++++----------------------------- src/BMA_init.c |only 6 files changed, 606 insertions(+), 601 deletions(-)
Title: Bayesian Projection of Life Expectancy
Description: Making probabilistic projections of life expectancy for all countries of the world, using a Bayesian hierarchical model <doi:10.1007/s13524-012-0193-x>.
Author: Hana Sevcikova, Adrian Raftery, Jennifer Chunn
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesLife versions 3.0-4 dated 2017-01-08 and 3.0-5 dated 2017-05-12
bayesLife-3.0-4/bayesLife/inst/ex-data/last.dump.rda |only bayesLife-3.0-5/bayesLife/ChangeLog | 6 ++++++ bayesLife-3.0-5/bayesLife/DESCRIPTION | 8 ++++---- bayesLife-3.0-5/bayesLife/MD5 | 14 +++++++------- bayesLife-3.0-5/bayesLife/NAMESPACE | 2 +- bayesLife-3.0-5/bayesLife/R/mcmc_estimate.R | 3 ++- bayesLife-3.0-5/bayesLife/R/run_mcmc.R | 13 ++++++++++++- bayesLife-3.0-5/bayesLife/man/bayesLife-package.Rd | 4 ++-- bayesLife-3.0-5/bayesLife/src/bayesLife_init.c |only 9 files changed, 34 insertions(+), 16 deletions(-)
Title: Read, Analyze and Plot River Networks
Description: Functions for reading, analysing and plotting river networks.
For this package, river networks consist of sections and nodes with associated attributes,
e.g. to characterise their morphological, chemical and biological state.
The package provides functions to read this data from text files, to analyse the network
structure and network paths and regions consisting of sections and nodes that fulfill
prescribed criteria, and to plot the river network and associated properties.
Author: Peter Reichert
Maintainer: Peter Reichert <peter.reichert@eawag.ch>
Diff between rivernet versions 1.0 dated 2014-10-16 and 1.1 dated 2017-05-12
DESCRIPTION | 8 MD5 | 35 ++- NAMESPACE | 8 R/adjacentreaches.rivernet.r | 89 +++++--- R/analyze.rivernet.r | 32 ++ R/getnodeind.rivernet.r |only R/getreachind.rivernet.r | 2 R/prune.rivernet.r |only R/rivernet.read.r | 434 ++++++++++++++++++++++++++-------------- R/rivernet.write.r |only inst |only man/adjacentreaches.rivernet.Rd | 9 man/analyze.Rd | 19 + man/analyze.rivernet.Rd | 11 - man/getnodeind.Rd |only man/getnodeind.rivernet.Rd |only man/getreachind.Rd | 2 man/getreachind.rivernet.Rd | 2 man/prune.Rd |only man/prune.rivernet.Rd |only man/rivernet-package.Rd | 9 man/rivernet.read.Rd | 29 +- man/rivernet.write.Rd |only 23 files changed, 467 insertions(+), 222 deletions(-)
Title: Plot 2D and 3D Views of the Earth, Including Major Coastline
Description: Basic functions for plotting 2D and 3D views of a sphere, by default the Earth with its major coastline, and additional lines and points.
Author: Adrian Baddeley [aut, cre],
Thomas Lawrence [aut],
Ege Rubak [aut]
Maintainer: Adrian Baddeley <adrian.baddeley@curtin.edu.au>
Diff between globe versions 1.1-2 dated 2016-02-03 and 1.2-0 dated 2017-05-12
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Title: Methods to Enrich R Objects with Extra Components
Description: Provides the "enrich" method to enrich list-like R objects with new, relevant components. The current version has methods for enriching objects of class 'family', 'link-glm', 'lm' and 'glm'. The resulting objects preserve their class, so all methods associated with them still apply. The package also provides the 'enriched_glm' function that has the same interface as 'glm' but results in objects of class 'enriched_glm'. In addition to the usual components in a `glm` object, 'enriched_glm' objects carry an object-specific simulate method and functions to compute the scores, the observed and expected information matrix, the first-order bias, as well as model densities, probabilities, and quantiles at arbitrary parameter values. The package can also be used to produce customizable source code templates for the structured implementation of methods to compute new components and enrich arbitrary objects.
Author: Ioannis Kosmidis [aut, cre]
Maintainer: Ioannis Kosmidis <i.kosmidis@ucl.ac.uk>
Diff between enrichwith versions 0.0.3 dated 2017-03-07 and 0.0.4 dated 2017-05-12
enrichwith-0.0.3/enrichwith/inst/TODO.org |only enrichwith-0.0.3/enrichwith/tests |only enrichwith-0.0.4/enrichwith/DESCRIPTION | 13 enrichwith-0.0.4/enrichwith/MD5 | 106 ++-- enrichwith-0.0.4/enrichwith/NAMESPACE | 7 enrichwith-0.0.4/enrichwith/NEWS.md | 23 enrichwith-0.0.4/enrichwith/R/enrich-package.R | 27 + enrichwith-0.0.4/enrichwith/R/enrich.family.R | 16 enrichwith-0.0.4/enrichwith/R/enrich.glm.R | 196 +++++++- enrichwith-0.0.4/enrichwith/R/enriched_glm.R | 84 +++ enrichwith-0.0.4/enrichwith/build/vignette.rds |binary enrichwith-0.0.4/enrichwith/inst/doc/GLMs.R | 130 +---- enrichwith-0.0.4/enrichwith/inst/doc/GLMs.Rmd | 157 ++---- enrichwith-0.0.4/enrichwith/inst/doc/GLMs.html | 234 +++++----- enrichwith-0.0.4/enrichwith/inst/doc/bias.Rmd | 1 enrichwith-0.0.4/enrichwith/inst/doc/bias.html | 4 enrichwith-0.0.4/enrichwith/man/coef.enriched_glm.Rd | 1 enrichwith-0.0.4/enrichwith/man/coef.enriched_lm.Rd | 1 enrichwith-0.0.4/enrichwith/man/create_enrichwith_skeleton.Rd | 1 enrichwith-0.0.4/enrichwith/man/endometrial.Rd | 1 enrichwith-0.0.4/enrichwith/man/enrich.Rd | 1 enrichwith-0.0.4/enrichwith/man/enrich.family.Rd | 16 enrichwith-0.0.4/enrichwith/man/enrich.glm.Rd | 22 enrichwith-0.0.4/enrichwith/man/enrich.link-glm.Rd | 1 enrichwith-0.0.4/enrichwith/man/enrich.lm.Rd | 1 enrichwith-0.0.4/enrichwith/man/enriched_glm.Rd |only enrichwith-0.0.4/enrichwith/man/enrichwith.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_auxiliary_functions.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_auxiliary_functions.glm.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_auxiliary_functions.lm.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_bias_function.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_bias_function.glm.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_bias_function.lm.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_dmodel_function.Rd |only enrichwith-0.0.4/enrichwith/man/get_dmodel_function.glm.Rd |only enrichwith-0.0.4/enrichwith/man/get_enrichment_options.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_enrichment_options.family.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_enrichment_options.glm.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_enrichment_options.link-glm.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_enrichment_options.lm.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_information_function.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_information_function.glm.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_information_function.lm.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_pmodel_function.Rd |only enrichwith-0.0.4/enrichwith/man/get_pmodel_function.glm.Rd |only enrichwith-0.0.4/enrichwith/man/get_qmodel_function.Rd |only enrichwith-0.0.4/enrichwith/man/get_qmodel_function.glm.Rd |only enrichwith-0.0.4/enrichwith/man/get_score_function.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_score_function.glm.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_score_function.lm.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_simulate_function.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_simulate_function.glm.Rd | 1 enrichwith-0.0.4/enrichwith/man/get_simulate_function.lm.Rd | 1 enrichwith-0.0.4/enrichwith/vignettes/GLMs.Rmd | 157 ++---- enrichwith-0.0.4/enrichwith/vignettes/GLMs[exported].html |only enrichwith-0.0.4/enrichwith/vignettes/bias.Rmd | 1 56 files changed, 676 insertions(+), 546 deletions(-)
Title: Robust Covariance Estimation via Nearest Neighbor Cleaning
Description: The cov.nnve() function implements robust covariance estimation
by the nearest neighbor variance estimation (NNVE) method of
Wang and Raftery (2002,JASA).
Author: Naisyin Wang <nwangaa@umich.edu> and Adrian Raftery
<raftery@uw.edu> with contributions from Chris Fraley <fraley@uw.edu>
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between covRobust versions 1.1-0 dated 2013-05-10 and 1.1-1 dated 2017-05-12
DESCRIPTION | 15 +++++++-------- MD5 | 6 +++--- NAMESPACE | 1 + R/cov.nnve.R | 14 +++++++------- 4 files changed, 18 insertions(+), 18 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-04 0.2.1
2013-01-09 0.2.0
2013-01-08 0.1.0