Title: Methods for Estimating Optimal Dynamic Treatment Regimes
Description: Methods to estimate dynamic treatment regimes using Interactive Q-Learning, Q-Learning, weighted learning, and value-search methods based on Augmented Inverse Probability Weighted Estimators and Inverse Probability Weighted Estimators.
Author: S. T. Holloway, E. B. Laber, K. A. Linn, B. Zhang, M. Davidian, and A. A. Tsiatis
Maintainer: Shannon T. Holloway <sthollow@ncsu.edu>
Diff between DynTxRegime versions 2.1 dated 2015-06-11 and 3.0 dated 2017-05-15
DynTxRegime-2.1/DynTxRegime/R/1Generics.R |only DynTxRegime-2.1/DynTxRegime/R/A01Classes.R |only DynTxRegime-2.1/DynTxRegime/R/A02Classes_TxInfo.R |only DynTxRegime-2.1/DynTxRegime/R/A03Classes_ModelObjSubset.R |only DynTxRegime-2.1/DynTxRegime/R/A04Classes_SimpleFit.R |only DynTxRegime-2.1/DynTxRegime/R/A05Classes_IterateFit.R |only DynTxRegime-2.1/DynTxRegime/R/A06Classes_IQLearn.R |only DynTxRegime-2.1/DynTxRegime/R/A07Classes_SubsetFit.R |only DynTxRegime-2.1/DynTxRegime/R/A08Classes_QLearn.R |only DynTxRegime-2.1/DynTxRegime/R/A09Classes_OtherFits.R |only DynTxRegime-2.1/DynTxRegime/R/A10Classes_OptimalSeq.R |only DynTxRegime-2.1/DynTxRegime/R/A11Classes_OptimalClass.R |only DynTxRegime-2.1/DynTxRegime/R/eliminateSingleTx.R |only DynTxRegime-2.1/DynTxRegime/R/fitCombined.R |only DynTxRegime-2.1/DynTxRegime/R/fitIterate.R |only DynTxRegime-2.1/DynTxRegime/R/fitPropen.R |only DynTxRegime-2.1/DynTxRegime/R/fitUtilities.R |only DynTxRegime-2.1/DynTxRegime/R/iqEst.R |only DynTxRegime-2.1/DynTxRegime/R/iqLearn_optTx1.R |only DynTxRegime-2.1/DynTxRegime/R/iqLearn_pm.R |only DynTxRegime-2.1/DynTxRegime/R/methods-DynTxRegime.R |only DynTxRegime-2.1/DynTxRegime/R/methods-qFuncs.R |only DynTxRegime-2.1/DynTxRegime/R/modelObjSubset.R |only DynTxRegime-2.1/DynTxRegime/R/optimalClass_AIPWE.R |only DynTxRegime-2.1/DynTxRegime/R/optimalClass_IPWE.R |only DynTxRegime-2.1/DynTxRegime/R/optimalClass_classification.R |only DynTxRegime-2.1/DynTxRegime/R/optimalCore.R |only DynTxRegime-2.1/DynTxRegime/R/optimalSeq_AIPWE.R |only DynTxRegime-2.1/DynTxRegime/R/optimalSeq_IPWE.R |only DynTxRegime-2.1/DynTxRegime/R/qLearnEst.R |only DynTxRegime-2.1/DynTxRegime/R/qLearn_optTx_testSet.R |only DynTxRegime-2.1/DynTxRegime/R/txUtilities.R |only DynTxRegime-2.1/DynTxRegime/man/class-DynTxRegime.Rd |only DynTxRegime-2.1/DynTxRegime/man/methods-ValueFuncs.Rd |only DynTxRegime-3.0/DynTxRegime/DESCRIPTION | 17 DynTxRegime-3.0/DynTxRegime/MD5 | 318 +++ DynTxRegime-3.0/DynTxRegime/NAMESPACE | 19 DynTxRegime-3.0/DynTxRegime/R/A00_DynTxRegime.R |only DynTxRegime-3.0/DynTxRegime/R/A01_List.R |only DynTxRegime-3.0/DynTxRegime/R/A02_SubsetList.R |only DynTxRegime-3.0/DynTxRegime/R/A03_DecisionPointList.R |only DynTxRegime-3.0/DynTxRegime/R/A04_ModelObjSubset.R |only DynTxRegime-3.0/DynTxRegime/R/A05_ModelObj_SubsetList.R |only DynTxRegime-3.0/DynTxRegime/R/A06_ModelObj_DecisionPointList.R |only DynTxRegime-3.0/DynTxRegime/R/A07_ModelObj_SubsetList_DecisionPointList.R |only DynTxRegime-3.0/DynTxRegime/R/A08_newModelObjSubset.R |only DynTxRegime-3.0/DynTxRegime/R/AA00_TxInfoBasic.R |only DynTxRegime-3.0/DynTxRegime/R/AA01_TxInfoFactor.R |only DynTxRegime-3.0/DynTxRegime/R/AA02_TxInfoInteger.R |only DynTxRegime-3.0/DynTxRegime/R/AA03_TxInfoNoSubsets.R |only DynTxRegime-3.0/DynTxRegime/R/AA04_TxInfoFactorNoSubsets.R |only DynTxRegime-3.0/DynTxRegime/R/AA05_TxInfoIntegerNoSubsets.R |only DynTxRegime-3.0/DynTxRegime/R/AA06_newTxInfoNoSubsets.R |only DynTxRegime-3.0/DynTxRegime/R/AA07_TxInfoWithSubsets.R |only DynTxRegime-3.0/DynTxRegime/R/AA08_TxSubset.R |only DynTxRegime-3.0/DynTxRegime/R/AA09_TxInfoFactorWithSubsets.R |only DynTxRegime-3.0/DynTxRegime/R/AA10_TxInfoIntegerWithSubsets.R |only DynTxRegime-3.0/DynTxRegime/R/AA11_newTxInfoWithSubsets.R |only DynTxRegime-3.0/DynTxRegime/R/AA12_TxInfoList.R |only DynTxRegime-3.0/DynTxRegime/R/AA13_newTxInfo.R |only DynTxRegime-3.0/DynTxRegime/R/AB00_TypedSimpleFit.R |only DynTxRegime-3.0/DynTxRegime/R/AB01_TypedSimpleFitNoSubsets.R |only DynTxRegime-3.0/DynTxRegime/R/AB02_TypedSimpleFitWithSubsets.R |only DynTxRegime-3.0/DynTxRegime/R/AB03_newTypedSimpleFit.R |only DynTxRegime-3.0/DynTxRegime/R/AB04_IterateFit.R |only DynTxRegime-3.0/DynTxRegime/R/AB05_IterateFitNoSubsets.R |only DynTxRegime-3.0/DynTxRegime/R/AB06_IterateFitWithSubsets.R |only DynTxRegime-3.0/DynTxRegime/R/AB07_newIterateFit.R |only DynTxRegime-3.0/DynTxRegime/R/AB08_SubsetListFit.R |only DynTxRegime-3.0/DynTxRegime/R/AB09_OutcomeRegression_DecisionPointList.R |only DynTxRegime-3.0/DynTxRegime/R/AB10_OutcomeRegression_SubsetList_DecisionPointList.R |only DynTxRegime-3.0/DynTxRegime/R/AB11_newOutcomeRegression.R |only DynTxRegime-3.0/DynTxRegime/R/AB12_OutcomeOnly.R |only DynTxRegime-3.0/DynTxRegime/R/AC01_PropensityFit.R |only DynTxRegime-3.0/DynTxRegime/R/AC02_PropensityFit_fSet.R |only DynTxRegime-3.0/DynTxRegime/R/AC03_PropensityFit_SubsetList.R |only DynTxRegime-3.0/DynTxRegime/R/AC04_PropensityFit_DecisionPointList.R |only DynTxRegime-3.0/DynTxRegime/R/AC05_PropensityFit_SubsetList_DecisionPointList.R |only DynTxRegime-3.0/DynTxRegime/R/AC06_newPropensityRegression.R |only DynTxRegime-3.0/DynTxRegime/R/AC07_PropensityOnly.R |only DynTxRegime-3.0/DynTxRegime/R/AC08_PropensityAndOutcome.R |only DynTxRegime-3.0/DynTxRegime/R/AD01_Regime.R |only DynTxRegime-3.0/DynTxRegime/R/AD02_Regime_DecisionPointList.R |only DynTxRegime-3.0/DynTxRegime/R/AD03_newRegimes.R |only DynTxRegime-3.0/DynTxRegime/R/AE01_CVInfo.R |only DynTxRegime-3.0/DynTxRegime/R/AE02_newCVInfo.R |only DynTxRegime-3.0/DynTxRegime/R/AF01_QLearn.R |only DynTxRegime-3.0/DynTxRegime/R/AF02_newQLearn.R |only DynTxRegime-3.0/DynTxRegime/R/AF03_IQLearnBase.R |only DynTxRegime-3.0/DynTxRegime/R/AF04_IQLearnSS.R |only DynTxRegime-3.0/DynTxRegime/R/AF05_IQLearnFS.R |only DynTxRegime-3.0/DynTxRegime/R/AF06_IQLearnFS_ME.R |only DynTxRegime-3.0/DynTxRegime/R/AF07_IQLearnFS_C.R |only DynTxRegime-3.0/DynTxRegime/R/AF08_IQLearnFS_VHet.R |only DynTxRegime-3.0/DynTxRegime/R/AG00_OptimBasic.R |only DynTxRegime-3.0/DynTxRegime/R/AG01_OptimKernel.R |only DynTxRegime-3.0/DynTxRegime/R/AG02_OWLOptim.R |only DynTxRegime-3.0/DynTxRegime/R/AG03_OWL.R |only DynTxRegime-3.0/DynTxRegime/R/AH01_OptimalClass.R |only DynTxRegime-3.0/DynTxRegime/R/AH02_OptimalClassIPWE.R |only DynTxRegime-3.0/DynTxRegime/R/AH03_OptimalClassAIPWE.R |only DynTxRegime-3.0/DynTxRegime/R/AH04_newOptimalClass.R |only DynTxRegime-3.0/DynTxRegime/R/AI01_OptimalSeq.R |only DynTxRegime-3.0/DynTxRegime/R/AI02_OptimalSeqIPWE_SDP.R |only DynTxRegime-3.0/DynTxRegime/R/AI03_OptimalSeqAIPWE_SDP.R |only DynTxRegime-3.0/DynTxRegime/R/AI04_OptimalSeqIPWE_MDP.R |only DynTxRegime-3.0/DynTxRegime/R/AI05_OptimalSeqAIPWE_MDP.R |only DynTxRegime-3.0/DynTxRegime/R/AI06_newOptimalSeq.R |only DynTxRegime-3.0/DynTxRegime/R/AJ01_EARLOptim.R |only DynTxRegime-3.0/DynTxRegime/R/AJ02_EARL.R |only DynTxRegime-3.0/DynTxRegime/R/AJ03_EARLIPWE.R |only DynTxRegime-3.0/DynTxRegime/R/AJ04_EARLAIPWE.R |only DynTxRegime-3.0/DynTxRegime/R/AJ05_newEARL.R |only DynTxRegime-3.0/DynTxRegime/R/AK01_RWLOptim.R |only DynTxRegime-3.0/DynTxRegime/R/AK02_RWL.R |only DynTxRegime-3.0/DynTxRegime/R/AL01_BOWLBasic.R |only DynTxRegime-3.0/DynTxRegime/R/AL02_BOWLBasic_fSet.R |only DynTxRegime-3.0/DynTxRegime/R/AL03_BOWLWithOneRegime.R |only DynTxRegime-3.0/DynTxRegime/R/AL04_BOWLWithSubsetRegimes.R |only DynTxRegime-3.0/DynTxRegime/R/AL05_BOWL.R |only DynTxRegime-3.0/DynTxRegime/R/AL06_newBOWL.R |only DynTxRegime-3.0/DynTxRegime/R/BOWL.R |only DynTxRegime-3.0/DynTxRegime/R/EARL.R |only DynTxRegime-3.0/DynTxRegime/R/OWL.R |only DynTxRegime-3.0/DynTxRegime/R/RWL.R |only DynTxRegime-3.0/DynTxRegime/R/checkInputs.R |only DynTxRegime-3.0/DynTxRegime/R/errors.R | 16 DynTxRegime-3.0/DynTxRegime/R/getFeasibleTx.R |only DynTxRegime-3.0/DynTxRegime/R/iqLearnFSC.R | 317 +-- DynTxRegime-3.0/DynTxRegime/R/iqLearnFSM.R | 320 +-- DynTxRegime-3.0/DynTxRegime/R/iqLearnSS.R | 330 +--- DynTxRegime-3.0/DynTxRegime/R/iqLearnVar.R | 388 +--- DynTxRegime-3.0/DynTxRegime/R/kernelFunc.R |only DynTxRegime-3.0/DynTxRegime/R/optimalClass.R | 400 ++-- DynTxRegime-3.0/DynTxRegime/R/optimalSeq.R | 808 +++------- DynTxRegime-3.0/DynTxRegime/R/plugInValue.R | 46 DynTxRegime-3.0/DynTxRegime/R/qLearn.R | 427 +---- DynTxRegime-3.0/DynTxRegime/R/titleIt.R |only DynTxRegime-3.0/DynTxRegime/man/BOWL-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/BOWL.Rd |only DynTxRegime-3.0/DynTxRegime/man/BOWLBasic_fSet-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/BOWLBinary-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/BOWLObj-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/BOWLWithOneRegime-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/BOWLWithSubsetRegimes-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/CVInfo-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/CVInfo1Par-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/CVInfo2Par-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/DecisionPointList-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/DynTxRegime-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/DynTxRegime-internal-api.Rd | 196 ++ DynTxRegime-3.0/DynTxRegime/man/DynTxRegime-package.Rd | 60 DynTxRegime-3.0/DynTxRegime/man/EARL-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/EARL.Rd |only DynTxRegime-3.0/DynTxRegime/man/EARLAIPWE-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/EARLIPWE-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/EARLOptim-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/IQLearnBase-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/IQLearnFS-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/IQLearnFS_C-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/IQLearnFS_ME-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/IQLearnFS_VHet-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/IQLearnSS-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/IterateFit-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/IterateFitNoSubsets-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/IterateFitWithSubsets-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/List-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/ModelObjSubset-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/ModelObj_DecisionPointList-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/ModelObj_SubsetList-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/ModelObj_SubsetList_DecisionPointList-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/MultipleDecisionPoint-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/OWL-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/OWL.Rd |only DynTxRegime-3.0/DynTxRegime/man/OWLOptim-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/OptimBasic-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/OptimKernel-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/OptimalClass-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/OptimalClassAIPWE-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/OptimalClassIPWE-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/OptimalSeq-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/OptimalSeqAIPWE_MDP-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/OptimalSeqAIPWE_SDP-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/OptimalSeqIPWE_MDP.Rd |only DynTxRegime-3.0/DynTxRegime/man/OptimalSeqIPWE_SDP.Rd |only DynTxRegime-3.0/DynTxRegime/man/OutcomeOnly-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/OutcomeRegression-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/OutcomeRegression_DecisionPointList-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/PropensityAndOutcome-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/PropensityFit-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/PropensityFit_DecisionPointList-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/PropensityFit_SubsetList-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/PropensityFit_SubsetList_DecisionPointList-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/PropensityFit_fSet-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/PropensityOnly-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/PropensityRegression-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/QLearn-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/RWL-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/RWL.Rd |only DynTxRegime-3.0/DynTxRegime/man/RWLOptim-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/Regime-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/RegimeObject-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/Regime_DecisionPointList-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/SingleDecisionPoint-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/SubsetList-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/SubsetListFit-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/SubsetListFit_DecisionPointList-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/SubsetsModeled-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/SubsetsNotModeled-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/TxInfoBasic-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/TxInfoFactor-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/TxInfoFactorWithSubsets-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/TxInfoInteger-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/TxInfoIntegerWithSubsets-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/TxInfoList-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/TxInfoNoSubsets-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/TxInfoWithSubsets-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/TxSubset-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/TypedSimpleFit-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/TypedSimpleFitNoSubsets-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/TypedSimpleFitWithSubsets-class.Rd |only DynTxRegime-3.0/DynTxRegime/man/bmiData.Rd | 3 DynTxRegime-3.0/DynTxRegime/man/buildModelObjSubset.Rd | 212 +- DynTxRegime-3.0/DynTxRegime/man/input_fSet.Rd |only DynTxRegime-3.0/DynTxRegime/man/input_iter.Rd |only DynTxRegime-3.0/DynTxRegime/man/input_moPropen.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newBOWL.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newBOWLBasic.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newBOWLOptimization.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newCVInfo.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newEARL.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newIQLearnFS_C.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newIQLearnFS_ME.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newIQLearnFS_VHet.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newIQLearnSS.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newIterateFit.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newModelObjSubset.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newOWL.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newOWLOptim.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newOptimalClass.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newOptimalSeq.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newOutcomeRegression.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newPropensityFit.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newQLearn.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newRWL.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newRegime.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newTxInfo.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newTxInfoNoSubsets.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newTxInfoWithSubsets.Rd |only DynTxRegime-3.0/DynTxRegime/man/internal_newTypedSimpleFit.Rd |only DynTxRegime-3.0/DynTxRegime/man/iqLearnFS.Rd | 420 ++--- DynTxRegime-3.0/DynTxRegime/man/iqLearnFSC.Rd | 443 ++--- DynTxRegime-3.0/DynTxRegime/man/iqLearnSS.Rd | 367 ++-- DynTxRegime-3.0/DynTxRegime/man/iqLearnVar.Rd | 426 ++--- DynTxRegime-3.0/DynTxRegime/man/methods-Qstep.Rd | 28 DynTxRegime-3.0/DynTxRegime/man/methods-classif.Rd | 42 DynTxRegime-3.0/DynTxRegime/man/methods-coef.Rd | 99 - DynTxRegime-3.0/DynTxRegime/man/methods-cvInfo.Rd |only DynTxRegime-3.0/DynTxRegime/man/methods-estimator.Rd | 50 DynTxRegime-3.0/DynTxRegime/man/methods-fitObject.Rd | 96 - DynTxRegime-3.0/DynTxRegime/man/methods-fittedCont.Rd | 31 DynTxRegime-3.0/DynTxRegime/man/methods-fittedMain.Rd | 31 DynTxRegime-3.0/DynTxRegime/man/methods-genetic.Rd | 35 DynTxRegime-3.0/DynTxRegime/man/methods-optTx.Rd | 54 DynTxRegime-3.0/DynTxRegime/man/methods-optimObj.Rd |only DynTxRegime-3.0/DynTxRegime/man/methods-outcome.Rd | 95 - DynTxRegime-3.0/DynTxRegime/man/methods-plot.Rd | 28 DynTxRegime-3.0/DynTxRegime/man/methods-propen.Rd | 45 DynTxRegime-3.0/DynTxRegime/man/methods-qqPlot.Rd | 30 DynTxRegime-3.0/DynTxRegime/man/methods-regimeCoef.Rd | 31 DynTxRegime-3.0/DynTxRegime/man/methods-residuals.Rd | 29 DynTxRegime-3.0/DynTxRegime/man/methods-show.Rd | 15 DynTxRegime-3.0/DynTxRegime/man/methods-stdDev.Rd | 32 DynTxRegime-3.0/DynTxRegime/man/methods-summary.Rd | 15 DynTxRegime-3.0/DynTxRegime/man/optimalClass.Rd | 373 ++-- DynTxRegime-3.0/DynTxRegime/man/optimalSeq.Rd | 511 ++---- DynTxRegime-3.0/DynTxRegime/man/plugInValue.Rd | 183 -- DynTxRegime-3.0/DynTxRegime/man/qLearn.Rd | 350 +--- 278 files changed, 3518 insertions(+), 4218 deletions(-)
Title: Fetch 'Scholary' Full Text from 'Crossref'
Description: Text mining client for 'Crossref' (<https://crossref.org>). Includes
functions for getting getting links to full text of articles, fetching full
text articles from those links or Digital Object Identifiers ('DOIs'),
and text extraction from 'PDFs'.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between crminer versions 0.1.0 dated 2017-04-27 and 0.1.2 dated 2017-05-15
DESCRIPTION | 10 ++++---- MD5 | 42 ++++++++++++++++++++---------------- NAMESPACE | 1 NEWS.md | 15 +++++++++++++ R/caching.R |only R/crm_html.R | 14 +++++++++++- R/crm_pdf.R | 47 +++++++++++++++++++++++++++-------------- R/crm_plain.R | 14 +++++++++++- R/crm_text.R | 45 +++++++++++++++++++++++++++------------ R/crm_xml.R | 14 +++++++++++- R/crminer-package.R | 2 - R/on_load.R |only R/utils.R | 17 ++++++-------- README.md | 21 ++++++++++-------- man/crm_cache.Rd |only man/crm_html.Rd | 6 ++--- man/crm_pdf.Rd | 26 +++++++++++++--------- man/crm_plain.Rd | 6 ++--- man/crm_text.Rd | 26 +++++++++++++--------- man/crm_xml.Rd | 6 ++--- man/crminer-package.Rd | 2 - tests/testthat/test-caching.R |only tests/testthat/test-crm_pdf.R | 3 +- tests/testthat/test-crm_text.R | 8 ------ 24 files changed, 211 insertions(+), 114 deletions(-)
Title: Analytical Tools for Zooarchaeological Data
Description: The analysis and inference of faunal remains recovered from
archaeological sites concerns the field of zooarchaeology. The zooaRch package
provides analytical tools to make inferences on zooarchaeological data.
Functions in this package allow users to read, manipulate, visualize, and
analyze zooarchaeological data.
Author: Erik Otarola-Castillo, Jesse Wolfhagen, John Brian Rapes, and Max D. Price
Maintainer: Erik Otarola-Castillo <eoc@purdue.edu>
Diff between zooaRchGUI versions 1.0.0 dated 2017-05-11 and 1.0.1 dated 2017-05-15
DESCRIPTION | 13 ++- MD5 | 6 - NAMESPACE | 1 R/zooarchGUI.r | 200 +++++++++++++++++++-------------------------------------- 4 files changed, 78 insertions(+), 142 deletions(-)
Title: Retrieval Functions for USGS and EPA Hydrologic and Water
Quality Data
Description: Collection of functions to help retrieve U.S. Geological Survey
(USGS) and U.S. Environmental Protection Agency (EPA) water quality and
hydrology data from web services. USGS web services are discovered from
National Water Information System (NWIS) <https://waterservices.usgs.gov/> and <https://waterdata.usgs.gov/nwis>.
Both EPA and USGS water quality data are obtained from the Water Quality Portal <https://www.waterqualitydata.us/>.
Author: Robert Hirsch [aut],
Laura DeCicco [aut, cre],
David Lorenz [aut],
Jordan Read [ctb],
Jordan Walker [ctb],
Lindsay Carr [ctb],
David Watkins [aut]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between dataRetrieval versions 2.6.3 dated 2016-12-07 and 2.7.0 dated 2017-05-15
dataRetrieval-2.6.3/dataRetrieval/R/importWaterML2.r |only dataRetrieval-2.6.3/dataRetrieval/man/dataRetrieval-package.Rd |only dataRetrieval-2.7.0/dataRetrieval/DESCRIPTION | 26 dataRetrieval-2.7.0/dataRetrieval/MD5 | 157 ++--- dataRetrieval-2.7.0/dataRetrieval/NAMESPACE | 21 dataRetrieval-2.7.0/dataRetrieval/NEWS | 9 dataRetrieval-2.7.0/dataRetrieval/R/AAA.R | 6 dataRetrieval-2.7.0/dataRetrieval/R/addWaterYear.R |only dataRetrieval-2.7.0/dataRetrieval/R/checkWQPdates.r | 5 dataRetrieval-2.7.0/dataRetrieval/R/constructNWISURL.r | 122 +--- dataRetrieval-2.7.0/dataRetrieval/R/getWebServiceData.R | 56 + dataRetrieval-2.7.0/dataRetrieval/R/importNGWMN_wml2.R |only dataRetrieval-2.7.0/dataRetrieval/R/importRDB1.r | 45 - dataRetrieval-2.7.0/dataRetrieval/R/importWQP.R | 56 - dataRetrieval-2.7.0/dataRetrieval/R/importWaterML1.r | 87 +- dataRetrieval-2.7.0/dataRetrieval/R/readNGWMNdata.R |only dataRetrieval-2.7.0/dataRetrieval/R/readNWISdata.r | 301 ++++++---- dataRetrieval-2.7.0/dataRetrieval/R/readNWISdv.r | 15 dataRetrieval-2.7.0/dataRetrieval/R/readNWISpCode.r | 34 - dataRetrieval-2.7.0/dataRetrieval/R/readNWISqw.r | 34 - dataRetrieval-2.7.0/dataRetrieval/R/readNWISsite.r | 2 dataRetrieval-2.7.0/dataRetrieval/R/readNWISunit.r | 107 +-- dataRetrieval-2.7.0/dataRetrieval/R/readWQPdata.R | 109 +-- dataRetrieval-2.7.0/dataRetrieval/R/readWQPdots.R |only dataRetrieval-2.7.0/dataRetrieval/R/readWQPqw.r | 15 dataRetrieval-2.7.0/dataRetrieval/R/setAccess.R | 19 dataRetrieval-2.7.0/dataRetrieval/R/tabbedDataRetrievals.R | 14 dataRetrieval-2.7.0/dataRetrieval/R/whatNWISData.r | 8 dataRetrieval-2.7.0/dataRetrieval/R/whatNWISsites.R | 30 dataRetrieval-2.7.0/dataRetrieval/R/whatWQPdata.R |only dataRetrieval-2.7.0/dataRetrieval/R/whatWQPsites.R | 43 - dataRetrieval-2.7.0/dataRetrieval/R/zeroPad.r | 2 dataRetrieval-2.7.0/dataRetrieval/README.md |only dataRetrieval-2.7.0/dataRetrieval/build/vignette.rds |binary dataRetrieval-2.7.0/dataRetrieval/inst/CITATION | 2 dataRetrieval-2.7.0/dataRetrieval/inst/doc/dataRetrieval.Rnw | 28 dataRetrieval-2.7.0/dataRetrieval/inst/doc/dataRetrieval.pdf |binary dataRetrieval-2.7.0/dataRetrieval/man/addWaterYear.Rd |only dataRetrieval-2.7.0/dataRetrieval/man/calcWaterYear.Rd |only dataRetrieval-2.7.0/dataRetrieval/man/checkWQPdates.Rd | 1 dataRetrieval-2.7.0/dataRetrieval/man/constructNWISURL.Rd | 31 - dataRetrieval-2.7.0/dataRetrieval/man/constructUseURL.Rd | 3 dataRetrieval-2.7.0/dataRetrieval/man/constructWQPURL.Rd | 13 dataRetrieval-2.7.0/dataRetrieval/man/convertLists.Rd |only dataRetrieval-2.7.0/dataRetrieval/man/countyCd.Rd | 1 dataRetrieval-2.7.0/dataRetrieval/man/countyCdLookup.Rd | 2 dataRetrieval-2.7.0/dataRetrieval/man/dataRetrieval.Rd |only dataRetrieval-2.7.0/dataRetrieval/man/getQuerySummary.Rd | 1 dataRetrieval-2.7.0/dataRetrieval/man/getWebServiceData.Rd | 1 dataRetrieval-2.7.0/dataRetrieval/man/importNGWMN.Rd |only dataRetrieval-2.7.0/dataRetrieval/man/importRDB1.Rd | 18 dataRetrieval-2.7.0/dataRetrieval/man/importWQP.Rd | 10 dataRetrieval-2.7.0/dataRetrieval/man/importWaterML1.Rd | 18 dataRetrieval-2.7.0/dataRetrieval/man/importWaterML2.Rd | 43 - dataRetrieval-2.7.0/dataRetrieval/man/pCodeToName.Rd | 3 dataRetrieval-2.7.0/dataRetrieval/man/parameterCdFile.Rd | 3 dataRetrieval-2.7.0/dataRetrieval/man/readNGWMNdata.Rd |only dataRetrieval-2.7.0/dataRetrieval/man/readNGWMNlevels.Rd |only dataRetrieval-2.7.0/dataRetrieval/man/readNGWMNsites.Rd |only dataRetrieval-2.7.0/dataRetrieval/man/readNWISdata.Rd | 40 - dataRetrieval-2.7.0/dataRetrieval/man/readNWISdots.Rd |only dataRetrieval-2.7.0/dataRetrieval/man/readNWISdv.Rd | 13 dataRetrieval-2.7.0/dataRetrieval/man/readNWISgwl.Rd | 21 dataRetrieval-2.7.0/dataRetrieval/man/readNWISmeas.Rd | 23 dataRetrieval-2.7.0/dataRetrieval/man/readNWISpCode.Rd | 5 dataRetrieval-2.7.0/dataRetrieval/man/readNWISpeak.Rd | 14 dataRetrieval-2.7.0/dataRetrieval/man/readNWISqw.Rd | 31 - dataRetrieval-2.7.0/dataRetrieval/man/readNWISrating.Rd | 7 dataRetrieval-2.7.0/dataRetrieval/man/readNWISsite.Rd | 3 dataRetrieval-2.7.0/dataRetrieval/man/readNWISstat.Rd | 5 dataRetrieval-2.7.0/dataRetrieval/man/readNWISuse.Rd | 6 dataRetrieval-2.7.0/dataRetrieval/man/readNWISuv.Rd | 31 - dataRetrieval-2.7.0/dataRetrieval/man/readWQPdata.Rd | 53 + dataRetrieval-2.7.0/dataRetrieval/man/readWQPdots.Rd |only dataRetrieval-2.7.0/dataRetrieval/man/readWQPqw.Rd | 16 dataRetrieval-2.7.0/dataRetrieval/man/renameNWISColumns.Rd | 1 dataRetrieval-2.7.0/dataRetrieval/man/setAccess.Rd | 1 dataRetrieval-2.7.0/dataRetrieval/man/stateCd.Rd | 3 dataRetrieval-2.7.0/dataRetrieval/man/stateCdLookup.Rd | 1 dataRetrieval-2.7.0/dataRetrieval/man/whatNWISdata.Rd | 7 dataRetrieval-2.7.0/dataRetrieval/man/whatNWISsites.Rd | 9 dataRetrieval-2.7.0/dataRetrieval/man/whatWQPdata.Rd |only dataRetrieval-2.7.0/dataRetrieval/man/whatWQPmetrics.Rd |only dataRetrieval-2.7.0/dataRetrieval/man/whatWQPsamples.Rd |only dataRetrieval-2.7.0/dataRetrieval/man/whatWQPsites.Rd | 11 dataRetrieval-2.7.0/dataRetrieval/man/zeroPad.Rd | 1 dataRetrieval-2.7.0/dataRetrieval/tests/testthat/tests_general.R | 226 +++++++ dataRetrieval-2.7.0/dataRetrieval/tests/testthat/tests_imports.R | 47 + dataRetrieval-2.7.0/dataRetrieval/tests/testthat/tests_userFriendly_fxns.R | 198 ++++++ dataRetrieval-2.7.0/dataRetrieval/vignettes/dataRetrieval.Rnw | 28 90 files changed, 1454 insertions(+), 848 deletions(-)
Title: Core Functionality for Simulating Quantities of Interest from
Generalised Linear Models
Description: Core functions for simulating quantities of interest
from generalised linear models (GLM). This package will form the backbone of
a series of other packages that improve the interpretation of GLM estimates.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between coreSim versions 0.2.3 dated 2016-12-09 and 0.2.4 dated 2017-05-15
DESCRIPTION | 11 ++++++----- MD5 | 19 +++++++++++-------- NEWS | 4 ++++ R/data.R |only R/qi_builder.R | 5 ++--- data |only man/Admission.Rd |only man/b_sim.Rd | 1 - man/linear_systematic.Rd | 1 - man/qi_builder.Rd | 6 ++---- man/qi_slimmer.Rd | 1 - tests/testthat/test_qi_builder.R | 3 +-- 12 files changed, 26 insertions(+), 25 deletions(-)
Title: Tools for Simulating and Plotting Quantities of Interest
Estimated from Cox Proportional Hazards Models
Description: Simulates and plots quantities of interest (relative
hazards, first differences, and hazard ratios) for linear coefficients,
multiplicative interactions, polynomials, penalised splines, and
non-proportional hazards, as well as stratified survival curves from Cox
Proportional Hazard models. It also simulates and plots marginal effects
for multiplicative interactions.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between simPH versions 1.3.9 dated 2016-05-19 and 1.3.10 dated 2017-05-15
DESCRIPTION | 12 +- MD5 | 64 ++++++++------- NEWS | 4 R/coxsimInteract.R | 7 - R/hmohivData.R |only README.md | 4 build/vignette.rds |binary data/hmohiv.rda |only demo/linear-jss.R | 10 -- inst/doc/simPH-overview.R | 159 ++++++++++++++++---------------------- inst/doc/simPH-overview.Rnw | 176 ++++++++++++++++++++++--------------------- inst/doc/simPH-overview.pdf |binary man/CarpenterFdaData.Rd | 1 man/GolubEUPData.Rd | 1 man/MinMaxLines.Rd | 1 man/SurvExpand.Rd | 1 man/as.data.frame.coxsim.Rd | 1 man/coxsimInteract.Rd | 6 - man/coxsimLinear.Rd | 1 man/coxsimPoly.Rd | 1 man/coxsimSpline.Rd | 1 man/coxsimtvc.Rd | 1 man/figures |only man/ggfitStrata.Rd | 1 man/hmohiv.Rd |only man/setXl.Rd | 1 man/simGG.Rd | 1 man/simGG.siminteract.Rd | 1 man/simGG.simlinear.Rd | 1 man/simGG.simpoly.Rd | 1 man/simGG.simspline.Rd | 1 man/simGG.simtvc.Rd | 1 man/simPH.Rd | 1 man/tvc.Rd | 1 vignettes/simPH-overview.Rnw | 4 35 files changed, 214 insertions(+), 251 deletions(-)
Title: The Residual-Based Predictiveness Curve
Description: The RBP curve is a visual tool to assess the
performance of prediction models.
Author: Giuseppe Casalicchio, Bernd Bischl
Maintainer: Giuseppe Casalicchio <giuseppe.casalicchio@stat.uni-muenchen.de>
Diff between RBPcurve versions 1.1 dated 2017-01-09 and 1.2 dated 2017-05-15
DESCRIPTION | 14 +++++++------- MD5 | 18 +++++++++--------- R/plotRBPCurve.R | 10 +++++----- man/addGoodCalib.Rd | 1 - man/addPEV.Rd | 1 - man/addPrevalence.Rd | 1 - man/addRates.Rd | 1 - man/addWellCalib.Rd | 1 - man/makeRBPObj.Rd | 3 +-- man/plotRBPCurve.Rd | 9 ++++----- 10 files changed, 26 insertions(+), 33 deletions(-)
Title: Computes Numeric Fourier Integrals
Description: Computes Fourier integrals of functions of one and two variables using the Fast Fourier transform. The Fourier transforms must be evaluated on a regular grid.
Author: Guillermo Basulto-Elias
Maintainer: Guillermo Basulto-Elias <guillermobasulto@gmail.com>
Diff between fourierin versions 0.2.1 dated 2017-04-26 and 0.2.2 dated 2017-05-15
DESCRIPTION | 12 MD5 | 16 NEWS.md | 8 R/fourierin.R | 980 ++++++++++++++++++++-------------------- inst/doc/fourierin_details.R | 52 -- inst/doc/fourierin_details.Rmd | 52 -- inst/doc/fourierin_details.html | 60 -- man/fourierin_2d.Rd | 2 vignettes/fourierin_details.Rmd | 52 -- 9 files changed, 585 insertions(+), 649 deletions(-)
Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow,Theory, vol. I: Methods and Applications; vol. II: Theory. 1953, New York: John Wiley and Sons), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y. G., 2015, <doi:10.1111/rssa.12116>). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>
Diff between vardpoor versions 0.9.0 dated 2017-03-21 and 0.9.2 dated 2017-05-15
vardpoor-0.9.0/vardpoor/R/vardgpgannual.R |only vardpoor-0.9.0/vardpoor/man/vardgpgannual.Rd |only vardpoor-0.9.2/vardpoor/DESCRIPTION | 8 vardpoor-0.9.2/vardpoor/MD5 | 55 +++-- vardpoor-0.9.2/vardpoor/NAMESPACE | 1 vardpoor-0.9.2/vardpoor/R/domain.R | 19 +- vardpoor-0.9.2/vardpoor/R/linpoormed.R | 10 - vardpoor-0.9.2/vardpoor/R/linrmpg.R | 6 vardpoor-0.9.2/vardpoor/R/vardannual.R | 222 ++++++++++++------------ vardpoor-0.9.2/vardpoor/R/vardchanges.R | 23 +- vardpoor-0.9.2/vardpoor/R/vardchangespoor.R | 4 vardpoor-0.9.2/vardpoor/R/vardcros.R | 131 +++++++++----- vardpoor-0.9.2/vardpoor/R/vardcrospoor.R | 4 vardpoor-0.9.2/vardpoor/R/vardom.R | 9 vardpoor-0.9.2/vardpoor/R/vardom_othstr.R | 2 vardpoor-0.9.2/vardpoor/R/vardomh.R | 27 +- vardpoor-0.9.2/vardpoor/R/varpoord.R | 42 ++-- vardpoor-0.9.2/vardpoor/man/linarpr.Rd | 2 vardpoor-0.9.2/vardpoor/man/linarpt.Rd | 2 vardpoor-0.9.2/vardpoor/man/linpoormed.Rd | 2 vardpoor-0.9.2/vardpoor/man/linrmpg.Rd | 2 vardpoor-0.9.2/vardpoor/man/vardannual.Rd | 9 vardpoor-0.9.2/vardpoor/man/vardchanges.Rd | 6 vardpoor-0.9.2/vardpoor/man/vardchangespoor.Rd | 4 vardpoor-0.9.2/vardpoor/man/vardcros.Rd | 6 vardpoor-0.9.2/vardpoor/man/vardcrospoor.Rd | 2 vardpoor-0.9.2/vardpoor/man/vardpoor-package.Rd | 4 vardpoor-0.9.2/vardpoor/man/varpoord.Rd | 36 --- vardpoor-0.9.2/vardpoor/tests |only 29 files changed, 345 insertions(+), 293 deletions(-)
Title: Extract Text from RTF File
Description: Extracts plain text from RTF (Rich Text Format) file.
Author: Kota Mori [aut, cre]
Maintainer: Kota Mori <kmori05@gmail.com>
Diff between striprtf versions 0.4.3 dated 2017-05-15 and 0.4.4 dated 2017-05-15
DESCRIPTION | 8 LICENSE | 4 MD5 | 82 +- NAMESPACE | 20 NEWS | 124 ++-- R/RcppExports.R | 30 - R/deprecated-functions.R | 68 +- R/global.R | 202 +++---- R/striprtf.R | 364 ++++++------- R/unused-letters.R | 112 ++-- R/utils.R | 16 README.md | 226 ++++---- inst/extdata/amenimo.rtf | 586 ++++++++++----------- inst/extdata/mean.rtf | 440 +++++++-------- inst/extdata/shakespeare.rtf | 138 ++-- man/read_rtf.Rd | 135 ++-- man/striprtf-deprecated.Rd | 67 +- man/unused_letters.Rd | 69 +- src/dechex.cpp | 4 tests/testthat.R | 8 tests/testthat/abiword.ans | 8 tests/testthat/abiword.rtf | 130 ++-- tests/testthat/big-with-table.rtf | 942 +++++++++++++++++----------------- tests/testthat/big.rtf | 826 ++++++++++++++--------------- tests/testthat/cp932.ans | 6 tests/testthat/cp932.rtf | 438 +++++++-------- tests/testthat/eastasia.ans | 8 tests/testthat/eastasia.rtf | 502 +++++++++--------- tests/testthat/europe.ans | 42 - tests/testthat/europe.rtf | 516 +++++++++--------- tests/testthat/hoge/test-read.R | 146 ++--- tests/testthat/hoge/test-strip.R | 144 ++--- tests/testthat/hoge/test-table.R | 148 ++--- tests/testthat/libre.ans | 8 tests/testthat/libre.rtf | 128 ++-- tests/testthat/msword.rtf | 424 +++++++-------- tests/testthat/table-multi.rtf | 154 ++--- tests/testthat/table-specialchars.rtf | 130 ++-- tests/testthat/table.rtf | 46 - tests/testthat/test-read.R | 144 ++--- tests/testthat/test-strip.R | 144 ++--- tests/testthat/test-table.R | 148 ++--- 42 files changed, 3946 insertions(+), 3939 deletions(-)
Title: Invoke 'Repast Simphony' Simulation Models
Description: An R and Repast integration tool for running individual-based
(IbM) simulation models developed using 'Repast Simphony' Agent-Based framework
directly from R code. This package integrates 'Repast Simphony' models within
R environment, making easier the tasks of running and analyzing model output
data for automated parameter calibration and for carrying out uncertainty and
sensitivity analysis using the power of R environment.
Author: Antonio Prestes Garcia [aut, cre],
Alfonso Rodriguez-Paton [aut, ths]
Maintainer: Antonio Prestes Garcia <antonio.pgarcia@alumnos.upm.es>
Diff between rrepast versions 0.5.0 dated 2016-05-08 and 0.6.0 dated 2017-05-15
DESCRIPTION | 8 MD5 | 213 +-- NAMESPACE | 15 NEWS | 32 R/RRepast.R | 2332 +++---------------------------------- R/rrepast-aoe.R |only R/rrepast-easyapi.R |only R/rrepast-engine.R |only R/rrepast-helper.R |only R/rrepast-pb.R |only R/rrepast-plots.R |only inst/java/rrepast-engine.jar |binary man/AddResults.Rd | 4 man/AoE.Base.Rd | 2 man/AoE.CoV.Rd | 4 man/AoE.ColumnCoV.Rd | 4 man/AoE.FullFactorial.Rd | 4 man/AoE.GetMorrisOutput.Rd | 4 man/AoE.LatinHypercube.Rd | 4 man/AoE.MAE.Rd | 2 man/AoE.Morris.Rd | 4 man/AoE.NRMSD.Rd | 4 man/AoE.RMSD.Rd | 4 man/AoE.RandomSampling.Rd | 2 man/AoE.Sobol.Rd | 6 man/AoE.Stability.Rd | 4 man/ApplyFactorRange.Rd | 2 man/BuildParameterSet.Rd | 10 man/Calibration.GetMemberKeys.Rd | 2 man/Calibration.GetMemberList.Rd | 2 man/Easy.Calibration.Rd | 2 man/Easy.Morris.Rd | 7 man/Easy.Setup.Rd | 2 man/Easy.ShowModelParameters.Rd |only man/Easy.Sobol.Rd | 6 man/Easy.Stability.Rd | 2 man/Easy.getChart.Rd | 2 man/Easy.getPlot.Rd |only man/Engine.Finish.Rd | 4 man/Engine.GetModelOutput.Rd | 4 man/Engine.LoadModel.Rd | 4 man/Engine.Rd | 6 man/Engine.RunModel.Rd | 2 man/Engine.SetAggregateDataSet.Rd | 6 man/Engine.endAt.Rd | 4 man/Engine.getId.Rd | 6 man/Engine.getParameter.Rd | 4 man/Engine.getParameterAsDouble.Rd | 2 man/Engine.getParameterAsNumber.Rd | 4 man/Engine.getParameterAsString.Rd | 4 man/Engine.getParameterNames.Rd | 2 man/Engine.getParameterType.Rd | 4 man/Engine.resetModelOutput.Rd |only man/Engine.setParameter.Rd | 2 man/GetOutput.Rd | 2 man/GetResultsParameters.Rd | 2 man/GetSimulationParameterType.Rd |only man/GetSimulationParameters.Rd | 2 man/Load.Rd | 2 man/Logger.setLevelInfo.Rd | 2 man/Logger.setLevelWarning.Rd | 2 man/Model.Rd | 14 man/PB.close.Rd | 2 man/PB.disable.Rd | 2 man/PB.enable.Rd | 2 man/PB.get.Rd | 2 man/PB.init.Rd | 2 man/PB.isEnabled.Rd | 4 man/PB.pset.Rd | 2 man/PB.set.Rd | 2 man/PB.update.Rd | 2 man/Plot.Calibration.Rd | 2 man/Plot.Morris.Rd | 2 man/Plot.Sobol.Rd | 2 man/Plot.Stability.Rd | 2 man/Results.GetCharts.Rd | 2 man/Results.GetExperiment.Rd | 2 man/Results.GetObject.Rd | 2 man/Run.Rd | 12 man/RunExperiment.Rd | 4 man/SaveSimulationData.Rd | 2 man/SequenceItem.Rd | 2 man/SetResultsParameters.Rd | 2 man/SetSimulationParameters.Rd | 2 man/ShowClassPath.Rd | 4 man/ShowModelPaths.Rd | 12 man/UpdateDefaultParameters.Rd |only man/check.integration.Rd |only man/check.scenario.Rd |only man/col.sum.Rd | 2 man/config.check.Rd |only man/config.copylib.Rd |only man/config.scenario.Rd |only man/createOutputDir.Rd | 8 man/df2matrix.Rd | 2 man/dffilterby.Rd | 4 man/dfround.Rd | 2 man/dfsumcol.Rd | 2 man/getExperimentDataset.Rd | 6 man/getExperimentOutput.Rd | 6 man/getExperimentParamSet.Rd | 6 man/getId.Rd | 2 man/getKeyRandom.Rd | 2 man/getLogDir.Rd | 2 man/getOutputDir.Rd | 4 man/jarfile.Rd |only man/jvm.get_parameters.Rd | 2 man/jvm.init.Rd | 10 man/jvm.resetOut.Rd | 4 man/jvm.setOut.Rd | 4 man/jvm.set_parameters.Rd | 8 man/pick.fittest.Rd | 2 man/setId.Rd | 2 man/setKeyRandom.Rd | 2 man/setOutputDir.Rd | 4 man/simple.fitting.Rd | 2 116 files changed, 579 insertions(+), 2356 deletions(-)
Title: Quickly Get Datetime Data Ready for Analysis
Description: Transforms datetime data into a format ready for analysis.
It offers two functionalities; aggregating data to a higher level interval
(thicken) and imputing records where observations were absent (pad). It also
offers a few functions that assist with filling missing values after padding.
Author: Edwin Thoen
Maintainer: Edwin Thoen <edwinthoen@gmail.com>
Diff between padr versions 0.2.1 dated 2017-02-19 and 0.3.0 dated 2017-05-15
DESCRIPTION | 10 MD5 | 70 ++--- NAMESPACE | 1 NEWS.md | 75 +++++ R/check_date_variables.R | 36 ++ R/create_emrgency.R | 2 R/fill_functions.R | 39 +- R/get_interval.R | 91 ++++++ R/helpers.R | 20 + R/pad.R | 420 ++++++++++++++++++------------ R/pad_int.R |only R/span.R | 122 +++----- R/thicken.R | 165 ++++++++--- R/thicken_helpers.R | 22 + README.md | 36 +- build/vignette.rds |binary inst/doc/padr.R | 16 - inst/doc/padr.Rmd | 29 +- inst/doc/padr.html | 62 +++- inst/doc/padr_implementation.Rmd | 15 - inst/doc/padr_implementation.html | 23 - man/emergency.Rd | 2 man/fill_by_prevalent.Rd | 2 man/get_interval.Rd | 1 man/pad.Rd | 49 ++- man/pad_int.Rd |only man/thicken.Rd | 22 - tests/testthat/test_fill_functions.R | 8 tests/testthat/test_get_interval.R | 99 ++++++- tests/testthat/test_helpers.R | 1 tests/testthat/test_pad.R | 175 +++++++++--- tests/testthat/test_pad_int.R |only tests/testthat/test_span.R | 14 - tests/testthat/test_thicken.R | 45 ++- tests/testthat/test_thicken_helpers.R | 8 tests/testthat/test_thicken_integration.R |only vignettes/padr.Rmd | 29 +- vignettes/padr_implementation.Rmd | 15 - 38 files changed, 1191 insertions(+), 533 deletions(-)
Title: Visualizing Asymmetric Data
Description: Models and methods for the visualization for asymmetric data. A matrix is asymmetric if the number of rows equals the number of columns, and these rows and columns refer to the same set of objects. An example is a student migration table, where the rows correspond to the countries of origin of the students and the columns to the destination countries. This package provides the slide-vector model and the asymscal model for asymmetric multidimensional scaling. Furthermore, a heat map for skew-symmetric data, and the decomposition of asymmetry are provided for the analysis of asymmetric tables.
Author: Berrie Zielman
Maintainer: Berrie Zielman <berrie.zielman@gmail.com>
Diff between asymmetry versions 1.2 dated 2017-02-16 and 1.2.1 dated 2017-05-15
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- R/asymscal.R | 39 ++++++++++++++++++++------------------- build/partial.rdb |binary inst/doc/asymmetry.Rmd | 4 ++-- inst/doc/asymmetry.html | 20 ++++++++++---------- man/asymscal.Rd | 16 ++++++++-------- man/asymscalexample.rd | 4 ---- man/slidevector.Rd | 10 +++++----- man/studentmigration.Rd | 4 ++-- vignettes/asymmetry.Rmd | 4 ++-- 11 files changed, 64 insertions(+), 67 deletions(-)
Title: Easily Tidy Data with 'spread()' and 'gather()' Functions
Description: An evolution of 'reshape2'. It's designed specifically for data
tidying (not general reshaping or aggregating) and works well with
'dplyr' data pipelines.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between tidyr versions 0.6.2 dated 2017-05-04 and 0.6.3 dated 2017-05-15
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ build/vignette.rds |binary tests/testthat/test-drop_na.R | 2 +- 5 files changed, 12 insertions(+), 8 deletions(-)
Title: Statistical Analysis of Chemistry, Histopathology, and
Reproduction Endpoints Including Repeated Measures and
Multi-Generation Studies
Description: A front end for the statistical analyses involved in the tier II endocrine
disruptor screening program. The analyses available to this package are:
Rao-Scott adjusted Cochran-Armitage test for trend By Slices (RSCABS),
a Standard Cochran-Armitage test for trend By Slices (SCABS),
mixed effects Cox proportional model, Jonckheere-Terpstra step down trend test
Dunn test, one way ANOVA, weighted ANOVA, mixed effects ANOVA, repeated
measures ANOVA, and Dunnett test.
Author: Joe Swintek [aut, cre],
Kevin Flynn [ctb],
Jon Haselman [ctb]
Maintainer: Joe Swintek <swintek.joe@epa.gov>
Diff between StatCharrms versions 0.90.1 dated 2017-05-08 and 0.90.2 dated 2017-05-15
StatCharrms-0.90.1/StatCharrms/vignettes/RSCABS-001.pdf |only StatCharrms-0.90.1/StatCharrms/vignettes/RSCABS.tex |only StatCharrms-0.90.2/StatCharrms/DESCRIPTION | 8 ++-- StatCharrms-0.90.2/StatCharrms/MD5 | 12 ++---- StatCharrms-0.90.2/StatCharrms/inst/doc/StatCharrms.Rnw | 26 +++++++-------- StatCharrms-0.90.2/StatCharrms/inst/doc/StatCharrms.pdf |binary StatCharrms-0.90.2/StatCharrms/vignettes/StatCharrms.Rnw | 26 +++++++-------- StatCharrms-0.90.2/StatCharrms/vignettes/StatCharrms.tex | 26 +++++++-------- 8 files changed, 48 insertions(+), 50 deletions(-)
Title: Identification, Tuning, Visualisation and Analysis of Labour
Market Areas
Description: Produces Labour Market Areas from commuting flows available at elementary territorial units. It provides tools for automatic tuning based on spatial contiguity. It also allows for statistical analyses and visualisation of the new functional geography.
Author: Daniela Ichim, Luisa Franconi, Michele D'Alo', Guido van den Heuvel
Maintainer: Luisa Franconi <franconi@istat.it>
Diff between LabourMarketAreas versions 2.0 dated 2016-10-03 and 3.0 dated 2017-05-15
DESCRIPTION | 14 MD5 | 46 R/LabourMarketAreas.R | 1846 ++++++++++++-------------------------- data/Brindisi.rda |binary data/names.Brindisi.rda |binary data/names.Sardinia.rda |binary data/shpBrindisi.rda |only data/shpSardinia.rda |only man/AddStatistics.Rd |only man/AssignLmaName.Rd | 6 man/AssignSingleComToSingleLma.Rd | 6 man/Brindisi.Rd | 2 man/CreateClusterData.Rd | 9 man/CreateLMAShape.Rd | 32 man/DeleteLmaName.Rd | 4 man/FindContig.Rd | 2 man/FindIsolated.Rd | 6 man/FineTuning.Rd | 4 man/LMAwrite.Rd | 4 man/LabourMarketAreas-package.Rd | 24 man/Sardinia.Rd | 5 man/StatClusterData.Rd | 71 + man/dissolveCluster.Rd | 2 man/dissolveClusterSel.Rd |only man/findClusters.Rd | 27 man/shpBrindisi.Rd |only man/shpSardinia.Rd |only 27 files changed, 759 insertions(+), 1351 deletions(-)
More information about LabourMarketAreas at CRAN
Permanent link
Title: Article Formats for R Markdown
Description: A suite of custom R Markdown formats and templates for
authoring journal articles and conference submissions.
Author: JJ Allaire [aut, cre],
R Foundation [aut, cph],
Hadley Wickham [aut],
Journal of Statistical Software [aut, cph],
Yihui Xie [aut],
RStudio [cph],
Ramnath Vaidyanathan [aut, cph],
Association for Computing Machinery [aut, cph],
Carl Boettiger [aut, cph],
Elsevier [aut, cph],
Karl Broman [aut, cph],
Kirill Mueller [aut, cph],
Bastiaan Quast [aut, cph],
Randall Pruim [aut, cph],
Ben Marwick [aut, cph],
Charlotte Wickham [aut, cph],
Oliver Keyes [aut, cph],
Miao Yu [aut, cph]
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between rticles versions 0.2 dated 2016-04-24 and 0.4 dated 2017-05-15
DESCRIPTION | 13 - MD5 | 107 ++++++++-- NAMESPACE | 7 R/aea_article.R |only R/ams_article.R |only R/asa_article.R |only R/jss_article.R | 24 +- R/plos_article.R |only R/pnas_article.R |only R/rss_article.R |only R/sim_article.R |only README.md | 17 - inst/rmarkdown/templates/acs_article/resources/template.tex | 13 + inst/rmarkdown/templates/aea_article |only inst/rmarkdown/templates/ams_article |only inst/rmarkdown/templates/asa_article |only inst/rmarkdown/templates/elsevier_article/skeleton/skeleton.pdf |only inst/rmarkdown/templates/elsevier_article/skeleton/skeleton.tex |only inst/rmarkdown/templates/jss_article/resources/template.tex | 17 - inst/rmarkdown/templates/jss_article/skeleton/jss.bst | 71 ++++-- inst/rmarkdown/templates/jss_article/skeleton/jss.cls | 38 ++- inst/rmarkdown/templates/jss_article/skeleton/skeleton.Rmd | 2 inst/rmarkdown/templates/plos_article |only inst/rmarkdown/templates/pnas_article |only inst/rmarkdown/templates/rss_article |only inst/rmarkdown/templates/sim_article |only man/acm_article.Rd | 1 man/acs_article.Rd | 1 man/aea_article.Rd |only man/ams_article.Rd |only man/asa_article.Rd |only man/ctex.Rd | 1 man/elsevier_article.Rd | 1 man/jss_article.Rd | 1 man/plos_article.Rd |only man/pnas_article.Rd |only man/rjournal_article.Rd | 1 man/rss_article.Rd |only man/sim_article.Rd |only tests/testthat/test_formats.R | 28 +- 40 files changed, 241 insertions(+), 102 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-15 1.0
Title: Pairing Up Units and Vectors in Panel Data Setting
Description: Pairing observations according to a chosen formula and facilitates bilateral analysis of the panel data. Paring is possible for observations, as well as for vectors of observations ordered with respect to time.
Author: Krzysztof Beck, Marcin Stryjek
Maintainer: Marcin Stryjek <pairwised@post.pl>
Diff between PairwiseD versions 0.9.58 dated 2017-05-04 and 0.9.62 dated 2017-05-15
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/PairwiseD.R | 34 ++++++++++++++++++++++------------ man/pairwised2.Rd | 7 ++++++- 4 files changed, 34 insertions(+), 19 deletions(-)
Title: TraMineR Extension
Description: Collection of ancillary functions and utilities to be used in conjunction with the 'TraMineR' package for sequence data exploration. Most of the functions are in test phase, lack systematic consistency check of the arguments and are subject to changes. Once fully checked, some of the functions of this collection could be included in a next release of 'TraMineR'.
Author: Gilbert Ritschard [aut, cre, ths, cph],
Matthias Studer [aut],
Reto Buergin [aut],
Alexis Gabadinho [ctb],
Nicolas Muller [ctb],
Patrick Rousset [ctb]
Maintainer: Gilbert Ritschard <gilbert.ritschard@unige.ch>
Diff between TraMineRextras versions 0.2.6 dated 2017-03-01 and 0.4.0 dated 2017-05-15
DESCRIPTION | 10 MD5 | 48 +-- R/TSE_TO_STS.R | 11 R/dissvar-grp.R | 20 - R/seqeformat.R | 544 +++++++++++++++++++++--------------------- R/seqentrans.R | 2 R/seqerulesdisc.R | 2 R/seqimplic.R | 15 - R/seqplot-rf.R | 8 R/seqplot-tentrop.R | 36 +- R/seqrep-grp.R | 10 inst/NEWS | 214 +++++++++------- inst/NEWS.Rd | 33 ++ man/TraMineRextras-package.Rd | 2 man/dissvar-grp.Rd | 4 man/seqedplot.Rd | 2 man/seqentrans.Rd | 10 man/seqgen.missing.Rd | 18 - man/seqgranularity.Rd | 4 man/seqimplic.Rd | 4 man/seqplot-rf.Rd | 8 man/seqplot-tentrop.Rd | 22 - man/seqrep-grp.Rd | 12 man/seqtabstocc.Rd | 2 man/sortv.Rd | 8 25 files changed, 551 insertions(+), 498 deletions(-)
More information about TraMineRextras at CRAN
Permanent link
Title: Helpers for Data Analysis and Presentation Focused on Undergrad
Psychology
Description: Contains functions for the easy display of statistical tests as well as
some convenience functions for recoding or data cleanup. It is meant to ease existing workflows
with packages like 'sjPlot', 'dplyr', and 'ggplot2'. The primary components are the functions
prefixed with 'tadaa_', which are built to work in an interactive environment, but also print
tidy markdown tables powered by 'pixiedust' for the creation of 'RMarkdown' reports.
Author: Lukas Burk [aut, cre],
Tobias Anton [aut],
Daniel Lüdecke [ctb]
Maintainer: Lukas Burk <lukas@quantenbrot.de>
Diff between tadaatoolbox versions 0.10.0 dated 2016-08-18 and 0.11.0 dated 2017-05-15
tadaatoolbox-0.10.0/tadaatoolbox/R/aov.R |only tadaatoolbox-0.10.0/tadaatoolbox/R/heatmap.R |only tadaatoolbox-0.10.0/tadaatoolbox/R/interaction_plots.R |only tadaatoolbox-0.10.0/tadaatoolbox/R/normtest.R |only tadaatoolbox-0.10.0/tadaatoolbox/R/sem.R |only tadaatoolbox-0.10.0/tadaatoolbox/R/t_test.R |only tadaatoolbox-0.10.0/tadaatoolbox/man/confint_t.Rd |only tadaatoolbox-0.10.0/tadaatoolbox/man/tadaa_sem.Rd |only tadaatoolbox-0.11.0/tadaatoolbox/DESCRIPTION | 12 - tadaatoolbox-0.11.0/tadaatoolbox/MD5 | 102 ++++++------ tadaatoolbox-0.11.0/tadaatoolbox/NAMESPACE | 7 tadaatoolbox-0.11.0/tadaatoolbox/NEWS.md | 47 ++++- tadaatoolbox-0.11.0/tadaatoolbox/R/cleanup_helpers.R | 14 + tadaatoolbox-0.11.0/tadaatoolbox/R/confint.R | 84 ++++++++- tadaatoolbox-0.11.0/tadaatoolbox/R/data.R | 2 tadaatoolbox-0.11.0/tadaatoolbox/R/effect_size.R | 9 - tadaatoolbox-0.11.0/tadaatoolbox/R/ggplot2_themes.R | 9 - tadaatoolbox-0.11.0/tadaatoolbox/R/misc_stats.R | 9 - tadaatoolbox-0.11.0/tadaatoolbox/R/tadaa_plots.R |only tadaatoolbox-0.11.0/tadaatoolbox/R/tadaa_stats.R |only tadaatoolbox-0.11.0/tadaatoolbox/README.md | 57 ++++-- tadaatoolbox-0.11.0/tadaatoolbox/build/vignette.rds |binary tadaatoolbox-0.11.0/tadaatoolbox/data/ngo.rda |binary tadaatoolbox-0.11.0/tadaatoolbox/inst/doc/overview.R | 7 tadaatoolbox-0.11.0/tadaatoolbox/inst/doc/overview.Rmd | 26 ++- tadaatoolbox-0.11.0/tadaatoolbox/inst/doc/overview.html | 118 ++++++++++---- tadaatoolbox-0.11.0/tadaatoolbox/man/confint.Rd |only tadaatoolbox-0.11.0/tadaatoolbox/man/delete_na.Rd | 10 - tadaatoolbox-0.11.0/tadaatoolbox/man/drop_labels.Rd | 1 tadaatoolbox-0.11.0/tadaatoolbox/man/effect_size_t.Rd | 1 tadaatoolbox-0.11.0/tadaatoolbox/man/generate_recodes.Rd | 1 tadaatoolbox-0.11.0/tadaatoolbox/man/interval_labels.Rd | 1 tadaatoolbox-0.11.0/tadaatoolbox/man/labels_to_factor.Rd | 1 tadaatoolbox-0.11.0/tadaatoolbox/man/mean_ci_sem.Rd |only tadaatoolbox-0.11.0/tadaatoolbox/man/mean_ci_t.Rd | 9 - tadaatoolbox-0.11.0/tadaatoolbox/man/modus.Rd | 5 tadaatoolbox-0.11.0/tadaatoolbox/man/ngo.Rd | 3 tadaatoolbox-0.11.0/tadaatoolbox/man/nom_c.Rd | 1 tadaatoolbox-0.11.0/tadaatoolbox/man/nom_chisqu.Rd | 1 tadaatoolbox-0.11.0/tadaatoolbox/man/nom_lambda.Rd | 1 tadaatoolbox-0.11.0/tadaatoolbox/man/nom_phi.Rd | 1 tadaatoolbox-0.11.0/tadaatoolbox/man/nom_v.Rd | 1 tadaatoolbox-0.11.0/tadaatoolbox/man/ord_gamma.Rd | 1 tadaatoolbox-0.11.0/tadaatoolbox/man/ord_somers_d.Rd | 1 tadaatoolbox-0.11.0/tadaatoolbox/man/pval_string.Rd | 1 tadaatoolbox-0.11.0/tadaatoolbox/man/tadaa_aov.Rd | 16 + tadaatoolbox-0.11.0/tadaatoolbox/man/tadaa_heatmap.Rd | 9 - tadaatoolbox-0.11.0/tadaatoolbox/man/tadaa_int.Rd | 30 +-- tadaatoolbox-0.11.0/tadaatoolbox/man/tadaa_kruskal.Rd |only tadaatoolbox-0.11.0/tadaatoolbox/man/tadaa_likertize.Rd | 1 tadaatoolbox-0.11.0/tadaatoolbox/man/tadaa_mean_ci.Rd |only tadaatoolbox-0.11.0/tadaatoolbox/man/tadaa_nom.Rd | 10 - tadaatoolbox-0.11.0/tadaatoolbox/man/tadaa_normtest.Rd | 11 - tadaatoolbox-0.11.0/tadaatoolbox/man/tadaa_one_sample.Rd |only tadaatoolbox-0.11.0/tadaatoolbox/man/tadaa_ord.Rd | 10 - tadaatoolbox-0.11.0/tadaatoolbox/man/tadaa_t.test.Rd | 14 - tadaatoolbox-0.11.0/tadaatoolbox/man/tadaa_wilcoxon.Rd |only tadaatoolbox-0.11.0/tadaatoolbox/man/tadaatoolbox.Rd | 1 tadaatoolbox-0.11.0/tadaatoolbox/man/theme_readthedown.Rd | 3 tadaatoolbox-0.11.0/tadaatoolbox/vignettes/overview.Rmd | 4 60 files changed, 415 insertions(+), 237 deletions(-)
Title: Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Column- and row- wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), are some of the many fast functions.
Author: Manos Papadakis, Michail Tsagris, Marios Dimitriadis, Ioannis Tsamardinos, Matteo Fasiolo, Giorgos Borboudakis, John Burkardt and Changliang Zou
Maintainer: Manos Papadakis <papadakm95@gmail.com>
Diff between Rfast versions 1.8.0 dated 2017-05-11 and 1.8.1 dated 2017-05-15
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- man/Rfast-package.Rd | 4 ++-- src/Order.cpp | 4 +++- src/bhattacharyya_dist.cpp | 2 +- src/canberra1_dist.cpp | 2 +- src/canberra2_dist.cpp | 2 +- src/hellinger_dist.cpp | 2 +- src/kullback_leibler_dist.cpp | 2 +- src/min_dist.cpp | 2 +- src/minkowski_dist.cpp | 2 +- src/total_variation_dist.cpp | 2 +- 12 files changed, 28 insertions(+), 26 deletions(-)
Title: Automatic Generation of Qualitative Color Palettes
Description: Automatic generation of distinct qualitative color palettes,
optionally adapted to color blindness. It takes a subspace of the HSL color
space as input and projects it to the DIN99d color space where it selects
and return colors that are maximally distinct.
Author: Johan Larsson [aut, cre]
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Diff between qualpalr versions 0.4.0 dated 2017-03-16 and 0.4.1 dated 2017-05-15
DESCRIPTION | 10 ++++----- MD5 | 28 ++++++++++++------------- NEWS.md | 8 +++++++ R/autopal.R | 9 ++++---- R/main.R | 26 ++++++++++++----------- R/plotting.R | 38 ++++++++++++++-------------------- README.md | 2 - build/vignette.rds |binary inst/doc/introduction.Rmd | 50 +++++++++++++++++++++++++++++++++++---------- inst/doc/introduction.html | 46 ++++++++++++++++++++--------------------- man/autopal.Rd | 2 - man/pairs.qualpal.Rd | 2 - man/plot.qualpal.Rd | 2 - man/qualpal.Rd | 8 +++---- vignettes/introduction.Rmd | 50 +++++++++++++++++++++++++++++++++++---------- 15 files changed, 171 insertions(+), 110 deletions(-)
Title: Compute, Handle, Plot and Model Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<http://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Author: Thibaut Jombart [aut, cre],
Rich FitzJohn [aut],
Jun Cai [ctb]
Maintainer: Thibaut Jombart <thibautjombart@gmail.com>
Diff between incidence versions 1.1.2 dated 2017-03-24 and 1.2.0 dated 2017-05-15
DESCRIPTION | 8 - MD5 | 91 +++++++------- NAMESPACE | 4 NEWS.md | 31 ++++ R/conversion.R | 233 ++++++++++++++++++++++++++++++------- R/fit.R | 2 R/incidence.R | 82 ------------- R/internals.R |only R/plot.R | 5 R/subset.R | 2 build/vignette.rds |binary inst/doc/conversions.R |only inst/doc/conversions.Rmd |only inst/doc/conversions.html |only inst/doc/customize_plot.R | 2 inst/doc/customize_plot.Rmd | 2 inst/doc/customize_plot.html | 42 +++--- inst/doc/incidence_class.R | 2 inst/doc/incidence_class.Rmd | 2 inst/doc/incidence_class.html | 14 +- inst/doc/overview.R | 6 inst/doc/overview.Rmd | 51 ++++++-- inst/doc/overview.html | 66 +++++----- man/conversions.Rd | 45 ++++++- man/fit.Rd | 2 man/incidence.Rd | 2 man/plot.incidence.Rd | 4 man/subset.Rd | 2 tests/testthat/rds/p.fit.i.2.rds |binary tests/testthat/rds/p.fit.i.rds |binary tests/testthat/rds/p.fit.sex.rds |binary tests/testthat/rds/p.i.14.rds |binary tests/testthat/rds/p.i.2.rds |binary tests/testthat/rds/p.i.3.rds |binary tests/testthat/rds/p.i.rds |binary tests/testthat/rds/p.isoweek.2.rds |binary tests/testthat/rds/p.isoweek.rds |binary tests/testthat/rds/p.sex.2.rds |binary tests/testthat/rds/p.sex.3.rds |binary tests/testthat/rds/p.sex.4.rds |binary tests/testthat/rds/p.sex.rds |binary tests/testthat/test-conversions.R | 32 +++++ tests/testthat/test-incidence.R | 39 ++++-- tests/testthat/test-non-exported.R | 37 +++++ tests/testthat/test-plot.R | 3 vignettes/conversions.Rmd |only vignettes/customize_plot.Rmd | 2 vignettes/incidence_class.Rmd | 2 vignettes/overview.Rmd | 51 ++++++-- 49 files changed, 584 insertions(+), 282 deletions(-)
Title: Singular Linear Models for Longitudinal Data
Description: Fits singular linear models to longitudinal data. Singular linear
models are useful when the number, or timing, of longitudinal observations
may be informative about the observations themselves. They are described
in Farewell (2010) <doi:10.1093/biomet/asp068>, and are extensions of the
linear increments model <doi:10.1111/j.1467-9876.2007.00590.x> to general
longitudinal data.
Author: Daniel Farewell [aut, cre]
Maintainer: Daniel Farewell <farewelld@cf.ac.uk>
Diff between slim versions 0.1.0 dated 2016-11-07 and 0.1.1 dated 2017-05-15
DESCRIPTION | 12 +++++------ MD5 | 52 ++++++++++++++++++++++++------------------------ NEWS.md | 5 ++-- R/data.R | 2 - R/list_covariances.R | 2 - R/methods.R | 2 - R/slim.R | 3 +- build/vignette.rds |binary inst/doc/slim.R | 10 ++++++--- inst/doc/slim.Rmd | 30 ++++++++++++++++++++------- inst/doc/slim.pdf |binary man/coef.slim.Rd | 1 man/compute_laurent.Rd | 1 man/confint.slim.Rd | 1 man/dialysis.Rd | 3 -- man/fit_slim.Rd | 3 -- man/fitted.slim.Rd | 1 man/list_covariances.Rd | 3 -- man/predict.slim.Rd | 1 man/print.slim.Rd | 1 man/residuals.slim.Rd | 1 man/slim-package.Rd | 1 man/slim.Rd | 1 man/slim.methods.Rd | 1 man/summary.slim.Rd | 3 -- man/vcov.slim.Rd | 1 vignettes/slim.Rmd | 30 ++++++++++++++++++++------- 27 files changed, 95 insertions(+), 76 deletions(-)
Title: Models for Data from Unmarked Animals
Description: Fits hierarchical models of animal abundance and occurrence to data collected using survey methods such as point counts, site occupancy sampling, distance sampling, removal sampling, and double observer sampling. Parameters governing the state and observation processes can be modeled as functions of covariates.
Author: Ian Fiske, Richard Chandler, David Miller, Andy Royle, Marc Kery, Jeff Hostetler, Rebecca Hutchinson
Maintainer: Andy Royle <aroyle@usgs.gov>
Diff between unmarked versions 0.12-0 dated 2017-04-16 and 0.12-2 dated 2017-05-15
DESCRIPTION | 8 +- MD5 | 46 +++++++------- R/pcount.spHDS.R | 23 +++++-- data/Switzerland.RData |binary data/birds.RData |binary data/crossbill.rda |binary data/cruz.rda |binary data/frogs.RData |binary data/gf.RData |binary data/issj.rda |binary data/jay.rda |binary data/linetran.RData |binary data/mallard.RData |binary data/masspcru.RData |binary data/ovendata.RData |binary data/pointtran.RData |binary inst/doc/cap-recap.pdf |binary inst/doc/colext.pdf |binary inst/doc/distsamp.pdf |binary inst/doc/spp-dist.pdf |binary inst/doc/unmarked.pdf |binary inst/unitTests/runit.pcount.spHDS.R | 5 - man/jay.Rd | 114 +++++++++++++++++++----------------- man/pcount.spHDS.Rd | 85 ++++++++++++++++++++++++-- 24 files changed, 188 insertions(+), 93 deletions(-)
Title: Trajectory Miner: a Toolbox for Exploring and Rendering
Sequences
Description: Toolbox for the manipulation, description and rendering of sequences, and more generally the mining of sequence data in the field of social sciences. Although the toolbox is primarily intended for analyzing state or event sequences that describe life courses such as family formation histories or professional careers, its features also apply to many other kinds of categorical sequence data. It accepts many different sequence representations as input and provides tools for converting sequences from one format to another. It offers several functions for describing and rendering sequences, for computing distances between sequences with different metrics (among which optimal matching), original dissimilarity-based analysis tools, and simple functions for extracting the most frequent subsequences and identifying the most discriminating ones among them. A user's guide can be found on the TraMineR web page.
Author: Alexis Gabadinho [aut, cph],
Matthias Studer [aut, cph],
Nicolas Müller [aut],
Reto Bürgin [aut],
Pierre-Alexandre Fonta [aut],
Gilbert Ritschard [aut, cre, cph]
Maintainer: Gilbert Ritschard <gilbert.ritschard@unige.ch>
Diff between TraMineR versions 1.8-13 dated 2016-10-05 and 2.0-5 dated 2017-05-15
TraMineR-1.8-13/TraMineR/R/DHDdist.R |only TraMineR-1.8-13/TraMineR/R/LCPdist.R |only TraMineR-1.8-13/TraMineR/R/LCSdist.R |only TraMineR-1.8-13/TraMineR/R/Levenshtein.R |only TraMineR-1.8-13/TraMineR/R/TraMineR-seqdist.R |only TraMineR-1.8-13/TraMineR/R/dissmfac.R |only TraMineR-1.8-13/TraMineR/R/normdist.R |only TraMineR-1.8-13/TraMineR/R/seqdistold.R |only TraMineR-1.8-13/TraMineR/R/seqmatsaltt.R |only TraMineR-1.8-13/TraMineR/R/seqsubm.R |only TraMineR-1.8-13/TraMineR/R/vidx.R |only TraMineR-1.8-13/TraMineR/man/dissmfac.Rd |only TraMineR-1.8-13/TraMineR/man/seqsubm.Rd |only TraMineR-1.8-13/TraMineR/src/alignement.cpp |only TraMineR-1.8-13/TraMineR/src/alignement.h |only TraMineR-1.8-13/TraMineR/src/saltt.cpp |only TraMineR-1.8-13/TraMineR/src/salttseq.cpp |only TraMineR-1.8-13/TraMineR/src/salttseq.h |only TraMineR-2.0-5/TraMineR/DESCRIPTION | 27 TraMineR-2.0-5/TraMineR/MD5 | 428 +- TraMineR-2.0-5/TraMineR/NAMESPACE | 61 TraMineR-2.0-5/TraMineR/NEWS | 1428 +++++----- TraMineR-2.0-5/TraMineR/R/STS_to_TSE.R | 154 - TraMineR-2.0-5/TraMineR/R/TraMineR-checkargs.R |only TraMineR-2.0-5/TraMineR/R/TraMineR-checkcost.R | 154 - TraMineR-2.0-5/TraMineR/R/TraMineR-is.a.number.R |only TraMineR-2.0-5/TraMineR/R/TraMineR-is.positive.integer.R |only TraMineR-2.0-5/TraMineR/R/TraMineR-logging_helpers.R |only TraMineR-2.0-5/TraMineR/R/TraMineR-permutation.R | 220 - TraMineR-2.0-5/TraMineR/R/TraMineR-setlayout.R | 19 TraMineR-2.0-5/TraMineR/R/TraMineR-trunc.R | 43 TraMineR-2.0-5/TraMineR/R/TraMineR.checkupdates.R | 182 - TraMineR-2.0-5/TraMineR/R/TraMineRInternal.R | 46 TraMineR-2.0-5/TraMineR/R/alphabet-set.R | 4 TraMineR-2.0-5/TraMineR/R/checktriangleineq.R | 34 TraMineR-2.0-5/TraMineR/R/cpal-set.R | 4 TraMineR-2.0-5/TraMineR/R/debuglevel.R | 4 TraMineR-2.0-5/TraMineR/R/dissassoc.R | 264 - TraMineR-2.0-5/TraMineR/R/dissassocweighted.R | 30 TraMineR-2.0-5/TraMineR/R/disscenter.R | 226 - TraMineR-2.0-5/TraMineR/R/dissmfacw.R | 316 +- TraMineR-2.0-5/TraMineR/R/dissrep.R | 67 TraMineR-2.0-5/TraMineR/R/disstree.dissassoc.R | 12 TraMineR-2.0-5/TraMineR/R/disstree.r | 982 +++--- TraMineR-2.0-5/TraMineR/R/disstree2dot.R | 858 +++--- TraMineR-2.0-5/TraMineR/R/dissvar.R | 64 TraMineR-2.0-5/TraMineR/R/dist2matrix.R | 24 TraMineR-2.0-5/TraMineR/R/entropy.R | 8 TraMineR-2.0-5/TraMineR/R/implicativestat.R | 100 TraMineR-2.0-5/TraMineR/R/plot.seqalign.R | 261 - TraMineR-2.0-5/TraMineR/R/plot.stslist.R | 286 +- TraMineR-2.0-5/TraMineR/R/plot.stslist.freq.R | 103 TraMineR-2.0-5/TraMineR/R/plot.stslist.meant.R | 105 TraMineR-2.0-5/TraMineR/R/plot.stslist.modst.R | 164 - TraMineR-2.0-5/TraMineR/R/plot.stslist.rep.R | 374 +- TraMineR-2.0-5/TraMineR/R/plot.stslist.statd.R | 163 - TraMineR-2.0-5/TraMineR/R/print.disstree.R | 166 - TraMineR-2.0-5/TraMineR/R/read.tda.mdist.R | 14 TraMineR-2.0-5/TraMineR/R/seqHtplot.R | 14 TraMineR-2.0-5/TraMineR/R/seqLLCP.R | 48 TraMineR-2.0-5/TraMineR/R/seqLLCS.R | 34 TraMineR-2.0-5/TraMineR/R/seqalign.R | 254 - TraMineR-2.0-5/TraMineR/R/seqasnum.R | 28 TraMineR-2.0-5/TraMineR/R/seqconc.R | 24 TraMineR-2.0-5/TraMineR/R/seqcost.R |only TraMineR-2.0-5/TraMineR/R/seqdecomp.R | 22 TraMineR-2.0-5/TraMineR/R/seqdef.R | 8 TraMineR-2.0-5/TraMineR/R/seqdiff.R | 316 +- TraMineR-2.0-5/TraMineR/R/seqdim.R | 2 TraMineR-2.0-5/TraMineR/R/seqdist-CHI2.R |only TraMineR-2.0-5/TraMineR/R/seqdist-OMstran.R |only TraMineR-2.0-5/TraMineR/R/seqdist.R | 952 +++++- TraMineR-2.0-5/TraMineR/R/seqdistmc.R | 19 TraMineR-2.0-5/TraMineR/R/seqdplot.R | 14 TraMineR-2.0-5/TraMineR/R/seqe.R | 272 - TraMineR-2.0-5/TraMineR/R/seqe2tse.R | 12 TraMineR-2.0-5/TraMineR/R/seqeapplysub.R | 128 TraMineR-2.0-5/TraMineR/R/seqecmpgroup.R | 328 +- TraMineR-2.0-5/TraMineR/R/seqeconstraint.R | 130 TraMineR-2.0-5/TraMineR/R/seqecontain.R | 24 TraMineR-2.0-5/TraMineR/R/seqecreate.R | 300 +- TraMineR-2.0-5/TraMineR/R/seqedist.R | 18 TraMineR-2.0-5/TraMineR/R/seqefsub.R | 173 - TraMineR-2.0-5/TraMineR/R/seqeid.R | 45 TraMineR-2.0-5/TraMineR/R/seqelength.R | 77 TraMineR-2.0-5/TraMineR/R/seqerules.R | 34 TraMineR-2.0-5/TraMineR/R/seqetm.R | 97 TraMineR-2.0-5/TraMineR/R/seqeweight.R | 86 TraMineR-2.0-5/TraMineR/R/seqfind.R | 4 TraMineR-2.0-5/TraMineR/R/seqfplot.R | 14 TraMineR-2.0-5/TraMineR/R/seqfpos.R | 8 TraMineR-2.0-5/TraMineR/R/seqient.R | 68 TraMineR-2.0-5/TraMineR/R/seqientdiff.R | 52 TraMineR-2.0-5/TraMineR/R/seqiplot.R | 18 TraMineR-2.0-5/TraMineR/R/seqlegend.R | 32 TraMineR-2.0-5/TraMineR/R/seqlogp.R | 232 - TraMineR-2.0-5/TraMineR/R/seqmeant.R | 110 TraMineR-2.0-5/TraMineR/R/seqmsplot.R | 14 TraMineR-2.0-5/TraMineR/R/seqmtplot.R | 16 TraMineR-2.0-5/TraMineR/R/seqnum.R | 10 TraMineR-2.0-5/TraMineR/R/seqpcplot.R | 70 TraMineR-2.0-5/TraMineR/R/seqplot.R | 471 +-- TraMineR-2.0-5/TraMineR/R/seqprep.R | 4 TraMineR-2.0-5/TraMineR/R/seqrecode.R | 224 - TraMineR-2.0-5/TraMineR/R/seqrep.R | 28 TraMineR-2.0-5/TraMineR/R/seqrplot.R | 14 TraMineR-2.0-5/TraMineR/R/seqstatd.R | 30 TraMineR-2.0-5/TraMineR/R/seqstatf.R | 2 TraMineR-2.0-5/TraMineR/R/seqstatl.R | 10 TraMineR-2.0-5/TraMineR/R/seqtab.R | 22 TraMineR-2.0-5/TraMineR/R/seqtrate.R | 197 - TraMineR-2.0-5/TraMineR/R/seqtree.R | 84 TraMineR-2.0-5/TraMineR/R/seqxtract.R | 2 TraMineR-2.0-5/TraMineR/R/stlab-set.R | 4 TraMineR-2.0-5/TraMineR/R/subseqelist.R | 108 TraMineR-2.0-5/TraMineR/R/zzz.R | 32 TraMineR-2.0-5/TraMineR/build/vignette.rds |binary TraMineR-2.0-5/TraMineR/data/ex1.rda |binary TraMineR-2.0-5/TraMineR/data/ex2.rda |binary TraMineR-2.0-5/TraMineR/data/famform.rda |binary TraMineR-2.0-5/TraMineR/demo/Events.R | 116 TraMineR-2.0-5/TraMineR/demo/Rendering.R | 562 +-- TraMineR-2.0-5/TraMineR/demo/Seqdist.R | 41 TraMineR-2.0-5/TraMineR/inst/CITATION | 232 - TraMineR-2.0-5/TraMineR/inst/NEWS.Rd |only TraMineR-2.0-5/TraMineR/inst/doc/TraMineR-state-sequence.R | 46 TraMineR-2.0-5/TraMineR/inst/doc/TraMineR-state-sequence.Rnw | 55 TraMineR-2.0-5/TraMineR/inst/doc/TraMineR-state-sequence.pdf |binary TraMineR-2.0-5/TraMineR/man/TraMineR-package.Rd | 126 TraMineR-2.0-5/TraMineR/man/TraMineR.checkupdates.Rd | 54 TraMineR-2.0-5/TraMineR/man/TraMineRInternal.Rd | 52 TraMineR-2.0-5/TraMineR/man/actcal.Rd | 84 TraMineR-2.0-5/TraMineR/man/actcal.tse.Rd | 2 TraMineR-2.0-5/TraMineR/man/alphabet.Rd | 80 TraMineR-2.0-5/TraMineR/man/bfspell.Rd | 85 TraMineR-2.0-5/TraMineR/man/biofam.Rd | 123 TraMineR-2.0-5/TraMineR/man/cpal.Rd | 85 TraMineR-2.0-5/TraMineR/man/dissassoc.Rd | 201 - TraMineR-2.0-5/TraMineR/man/disscenter.Rd | 207 - TraMineR-2.0-5/TraMineR/man/dissmfacw.Rd |only TraMineR-2.0-5/TraMineR/man/dissrep.Rd | 249 - TraMineR-2.0-5/TraMineR/man/disstree.Rd | 253 - TraMineR-2.0-5/TraMineR/man/disstree2dot.Rd | 201 - TraMineR-2.0-5/TraMineR/man/disstreeleaf.Rd | 44 TraMineR-2.0-5/TraMineR/man/dissvar.Rd | 147 - TraMineR-2.0-5/TraMineR/man/ex1.Rd | 44 TraMineR-2.0-5/TraMineR/man/ex2.Rd | 80 TraMineR-2.0-5/TraMineR/man/mvad.Rd | 87 TraMineR-2.0-5/TraMineR/man/plot.seqdiff.Rd | 90 TraMineR-2.0-5/TraMineR/man/plot.stslist.Rd | 189 - TraMineR-2.0-5/TraMineR/man/plot.stslist.freq.Rd | 138 TraMineR-2.0-5/TraMineR/man/plot.stslist.meant.Rd | 116 TraMineR-2.0-5/TraMineR/man/plot.stslist.modst.Rd | 102 TraMineR-2.0-5/TraMineR/man/plot.stslist.rep.Rd | 151 - TraMineR-2.0-5/TraMineR/man/plot.stslist.statd.Rd | 122 TraMineR-2.0-5/TraMineR/man/plot.subseqelist.Rd | 94 TraMineR-2.0-5/TraMineR/man/plot.subseqelistchisq.Rd | 91 TraMineR-2.0-5/TraMineR/man/seqST.Rd | 150 - TraMineR-2.0-5/TraMineR/man/seqalign.Rd | 154 - TraMineR-2.0-5/TraMineR/man/seqcomp.Rd | 66 TraMineR-2.0-5/TraMineR/man/seqconc.Rd | 77 TraMineR-2.0-5/TraMineR/man/seqcost.Rd |only TraMineR-2.0-5/TraMineR/man/seqdef.Rd | 411 +- TraMineR-2.0-5/TraMineR/man/seqdiff.Rd | 142 TraMineR-2.0-5/TraMineR/man/seqdist.Rd | 556 +++ TraMineR-2.0-5/TraMineR/man/seqdistmc.Rd | 168 - TraMineR-2.0-5/TraMineR/man/seqe.Rd | 88 TraMineR-2.0-5/TraMineR/man/seqeapplysub.Rd | 141 TraMineR-2.0-5/TraMineR/man/seqecmpgroup.Rd | 130 TraMineR-2.0-5/TraMineR/man/seqeconstraint.Rd | 131 TraMineR-2.0-5/TraMineR/man/seqecontain.Rd | 94 TraMineR-2.0-5/TraMineR/man/seqecreate.Rd | 129 TraMineR-2.0-5/TraMineR/man/seqefsub.Rd | 181 - TraMineR-2.0-5/TraMineR/man/seqeid.Rd | 49 TraMineR-2.0-5/TraMineR/man/seqelength.Rd | 97 TraMineR-2.0-5/TraMineR/man/seqetm.Rd | 125 TraMineR-2.0-5/TraMineR/man/seqeweight.Rd | 101 TraMineR-2.0-5/TraMineR/man/seqfcheck.Rd | 85 TraMineR-2.0-5/TraMineR/man/seqformat.Rd | 283 - TraMineR-2.0-5/TraMineR/man/seqgen.Rd | 56 TraMineR-2.0-5/TraMineR/man/seqici.Rd | 175 - TraMineR-2.0-5/TraMineR/man/seqient.Rd | 124 TraMineR-2.0-5/TraMineR/man/seqistatd.Rd | 2 TraMineR-2.0-5/TraMineR/man/seqlegend.Rd | 16 TraMineR-2.0-5/TraMineR/man/seqlogp.Rd | 134 TraMineR-2.0-5/TraMineR/man/seqmeant.Rd | 2 TraMineR-2.0-5/TraMineR/man/seqmodst.Rd | 120 TraMineR-2.0-5/TraMineR/man/seqpcplot.Rd | 640 ++-- TraMineR-2.0-5/TraMineR/man/seqplot.Rd | 474 +-- TraMineR-2.0-5/TraMineR/man/seqrecode.Rd | 158 - TraMineR-2.0-5/TraMineR/man/seqrep.Rd | 336 +- TraMineR-2.0-5/TraMineR/man/seqstatd.Rd | 148 - TraMineR-2.0-5/TraMineR/man/seqstatl.Rd | 68 TraMineR-2.0-5/TraMineR/man/seqtab.Rd | 12 TraMineR-2.0-5/TraMineR/man/seqtransn.Rd | 3 TraMineR-2.0-5/TraMineR/man/seqtrate.Rd | 9 TraMineR-2.0-5/TraMineR/man/seqtree.Rd | 171 - TraMineR-2.0-5/TraMineR/man/seqtreedisplay.Rd | 147 - TraMineR-2.0-5/TraMineR/man/stlab.Rd | 81 TraMineR-2.0-5/TraMineR/man/str.seqe.Rd | 66 TraMineR-2.0-5/TraMineR/src/DHDdistance.cpp |only TraMineR-2.0-5/TraMineR/src/DHDdistance.h |only TraMineR-2.0-5/TraMineR/src/LCPdistance.cpp |only TraMineR-2.0-5/TraMineR/src/LCPdistance.h |only TraMineR-2.0-5/TraMineR/src/NMSDURSoftdistance.cpp |only TraMineR-2.0-5/TraMineR/src/NMSDURSoftdistance.h |only TraMineR-2.0-5/TraMineR/src/NMSMSTSoftdistance.cpp |only TraMineR-2.0-5/TraMineR/src/NMSMSTSoftdistance.h |only TraMineR-2.0-5/TraMineR/src/NMSMSTSoftdistanceII.cpp |only TraMineR-2.0-5/TraMineR/src/NMSMSTSoftdistanceII.h |only TraMineR-2.0-5/TraMineR/src/NMSMSTdistance.cpp |only TraMineR-2.0-5/TraMineR/src/NMSMSTdistance.h |only TraMineR-2.0-5/TraMineR/src/NMSdistance.cpp |only TraMineR-2.0-5/TraMineR/src/NMSdistance.h |only TraMineR-2.0-5/TraMineR/src/OMPerdistance.cpp |only TraMineR-2.0-5/TraMineR/src/OMPerdistance.h |only TraMineR-2.0-5/TraMineR/src/OMVI2distance.cpp |only TraMineR-2.0-5/TraMineR/src/OMVI2distance.h |only TraMineR-2.0-5/TraMineR/src/OMVIdistance.cpp |only TraMineR-2.0-5/TraMineR/src/OMVIdistance.h |only TraMineR-2.0-5/TraMineR/src/OMdistance.cpp |only TraMineR-2.0-5/TraMineR/src/OMdistance.h |only TraMineR-2.0-5/TraMineR/src/OMvdistance.cpp |only TraMineR-2.0-5/TraMineR/src/OMvdistance.h |only TraMineR-2.0-5/TraMineR/src/TWEDdistance.cpp |only TraMineR-2.0-5/TraMineR/src/TWEDdistance.h |only TraMineR-2.0-5/TraMineR/src/TraMineR.h | 17 TraMineR-2.0-5/TraMineR/src/chisq.cpp |only TraMineR-2.0-5/TraMineR/src/distancecalculator.cpp |only TraMineR-2.0-5/TraMineR/src/distancecalculator.h |only TraMineR-2.0-5/TraMineR/src/distancefunctions.cpp | 471 +-- TraMineR-2.0-5/TraMineR/src/distanceobject.cpp |only TraMineR-2.0-5/TraMineR/src/distanceobject.h |only TraMineR-2.0-5/TraMineR/src/eventseq.cpp | 126 TraMineR-2.0-5/TraMineR/src/eventseq.h | 2 TraMineR-2.0-5/TraMineR/src/ffunctions.c | 86 TraMineR-2.0-5/TraMineR/src/inertiafunctions.c | 10 TraMineR-2.0-5/TraMineR/src/init.c |only TraMineR-2.0-5/TraMineR/src/prefixtree.cpp | 2 TraMineR-2.0-5/TraMineR/src/prefixtree.h | 2 TraMineR-2.0-5/TraMineR/src/seqedist.cpp | 2 TraMineR-2.0-5/TraMineR/src/tmrsequence.cpp | 60 TraMineR-2.0-5/TraMineR/src/treeeventmap.h | 4 TraMineR-2.0-5/TraMineR/src/treeeventnode.h | 8 TraMineR-2.0-5/TraMineR/vignettes/TraMineR-state-sequence.Rnw | 55 245 files changed, 12586 insertions(+), 11642 deletions(-)
Title: Extract Text from RTF File
Description: Extracts plain text from RTF (Rich Text Format) file.
Author: Kota Mori [aut, cre]
Maintainer: Kota Mori <kmori05@gmail.com>
Diff between striprtf versions 0.3.1 dated 2017-03-31 and 0.4.3 dated 2017-05-15
DESCRIPTION | 13 LICENSE | 4 MD5 | 77 +-- NAMESPACE | 19 NEWS |only R/RcppExports.R | 26 - R/deprecated-functions.R | 68 +- R/global.R | 191 ++++--- R/striprtf.R | 303 +++++++----- R/unused-letters.R |only R/utils.R | 17 README.md | 195 ++++---- inst/extdata/amenimo.rtf | 586 ++++++++++++------------ inst/extdata/mean.rtf | 440 +++++++++--------- inst/extdata/shakespeare.rtf |only man/read_rtf.Rd | 128 ++--- man/striprtf-deprecated.Rd | 68 +- man/unused_letters.Rd |only src/RcppExports.cpp | 12 src/dechex.cpp | 49 ++ src/dechex.h | 5 src/strip_helper.cpp | 9 src/striprtf_init.c | 18 tests/testthat.R | 8 tests/testthat/abiword.ans | 8 tests/testthat/abiword.rtf | 130 ++--- tests/testthat/big-with-table.rtf |only tests/testthat/big.rtf | 826 +++++++++++++++++----------------- tests/testthat/cp932.ans | 6 tests/testthat/cp932.rtf | 438 +++++++++--------- tests/testthat/eastasia.ans | 8 tests/testthat/eastasia.rtf | 502 ++++++++++---------- tests/testthat/europe.ans | 42 - tests/testthat/europe.rtf | 516 ++++++++++----------- tests/testthat/hoge |only tests/testthat/libre.ans | 8 tests/testthat/libre.rtf | 128 ++--- tests/testthat/msword.rtf | 424 ++++++++--------- tests/testthat/table-multi.rtf |only tests/testthat/table-specialchars.rtf |only tests/testthat/table.rtf |only tests/testthat/test-read.R |only tests/testthat/test-strip.R | 144 ++--- tests/testthat/test-table.R |only 44 files changed, 2809 insertions(+), 2607 deletions(-)
Title: Bayesian Modeling and Analysis of Spatially Correlated Survival
Data
Description: Provides several Bayesian survival models for spatial/non-spatial survival data: marginal Bayesian Nonparametric models, marginal Bayesian proportional hazards models, generalized accelerated failure time frailty models, and standard semiparametric frailty models within the context of proportional hazards, proportional odds and accelerated failure time.
Author: Haiming Zhou <zhouh@niu.edu> and Tim Hanson <hansont@stat.sc.edu>
Maintainer: Haiming Zhou <zhouh@niu.edu>
Diff between spBayesSurv versions 1.1.0 dated 2017-03-31 and 1.1.1 dated 2017-05-15
spBayesSurv-1.1.0/spBayesSurv/inst/doc/Intro_to_spBayesSurv.Rnw |only spBayesSurv-1.1.0/spBayesSurv/inst/doc/Intro_to_spBayesSurv.pdf |only spBayesSurv-1.1.0/spBayesSurv/vignettes/Intro_to_spBayesSurv.Rnw |only spBayesSurv-1.1.1/spBayesSurv/DESCRIPTION | 8 spBayesSurv-1.1.1/spBayesSurv/MD5 | 59 spBayesSurv-1.1.1/spBayesSurv/R/frailtyGAFT.R | 9 spBayesSurv-1.1.1/spBayesSurv/R/survregbayes.R | 2028 +- spBayesSurv-1.1.1/spBayesSurv/build/vignette.rds |binary spBayesSurv-1.1.1/spBayesSurv/inst/CITATION | 52 spBayesSurv-1.1.1/spBayesSurv/inst/doc/spBayesSurv.Rnw |only spBayesSurv-1.1.1/spBayesSurv/inst/doc/spBayesSurv.pdf |only spBayesSurv-1.1.1/spBayesSurv/inst/otherdata/nigeria.bnd |only spBayesSurv-1.1.1/spBayesSurv/src/spSurv_AFT_MPT.cpp | 12 spBayesSurv-1.1.1/spBayesSurv/src/spSurv_PH_MPT.cpp | 12 spBayesSurv-1.1.1/spBayesSurv/src/spSurv_PO_MPT.cpp | 12 spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-GAFT-CAR-Map.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-GAFT-CAR-age.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-GAFT-CAR-trace.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-LDDPM-copula-Map.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-LDDPM-copula-age.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-LDDPM-copula-trace.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-PH-copula-Map.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-PH-copula-age.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-PH-copula-trace.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-PO-CAR-Cox-Snell.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-PO-CAR-Map.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-PO-CAR-age.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-PO-CAR-trace.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-PO-GRF-Cox-Snell.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-PO-GRF-Map.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-PO-GRF-age.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/Leukemia-PO-GRF-trace.pdf |binary spBayesSurv-1.1.1/spBayesSurv/vignettes/bibliography.bib | 7634 +++++----- spBayesSurv-1.1.1/spBayesSurv/vignettes/spBayesSurv.Rnw |only 34 files changed, 4931 insertions(+), 4895 deletions(-)
Title: Simple Features for R
Description: Support for simple features, a standardized way to encode spatial vector data. Binds
to GDAL for reading and writing data, to GEOS for geometrical operations, and to Proj.4 for projection
conversions and datum transformations.
Author: Edzer Pebesma [aut, cre],
Roger Bivand [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Michael Sumner [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb],
Etienne Racine [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 0.4-2 dated 2017-05-05 and 0.4-3 dated 2017-05-15
sf-0.4-2/sf/vignettes/sf.xfig |only sf-0.4-3/sf/DESCRIPTION | 13 ++-- sf-0.4-3/sf/MD5 | 78 +++++++++++++----------- sf-0.4-3/sf/NAMESPACE | 4 + sf-0.4-3/sf/NEWS.md | 29 ++++++--- sf-0.4-3/sf/R/RcppExports.R | 8 ++ sf-0.4-3/sf/R/aggregate.R | 5 - sf-0.4-3/sf/R/bind.R | 3 sf-0.4-3/sf/R/cast_sfc.R | 7 +- sf-0.4-3/sf/R/crs.R | 23 ++++++- sf-0.4-3/sf/R/geohash.R |only sf-0.4-3/sf/R/geom.R | 2 sf-0.4-3/sf/R/read.R | 15 ++++ sf-0.4-3/sf/R/sample.R | 7 -- sf-0.4-3/sf/R/sfc.R | 8 ++ sf-0.4-3/sf/R/tidyverse.R | 25 +++++-- sf-0.4-3/sf/R/valid.R | 3 sf-0.4-3/sf/inst/doc/sf1.html | 37 ++++++----- sf-0.4-3/sf/inst/doc/sf2.html | 6 - sf-0.4-3/sf/inst/include |only sf-0.4-3/sf/inst/sqlite |only sf-0.4-3/sf/man/aggregate.sf.Rd | 5 - sf-0.4-3/sf/man/bind.Rd | 3 sf-0.4-3/sf/man/dplyr.Rd | 16 +++-- sf-0.4-3/sf/man/geos.Rd | 2 sf-0.4-3/sf/man/st_cast.Rd | 9 +- sf-0.4-3/sf/man/st_crs.Rd | 10 +++ sf-0.4-3/sf/man/st_geohash.Rd |only sf-0.4-3/sf/src/RcppExports.cpp | 61 +++++++++++++++++++ sf-0.4-3/sf/src/export.cpp |only sf-0.4-3/sf/src/init.c | 88 ++++++++++++++------------- sf-0.4-3/sf/src/lwgeom.cpp | 58 ++++++++++++++---- sf-0.4-3/sf/src/wkb.cpp | 19 +++--- sf-0.4-3/sf/tests/read.R | 26 ++++++++ sf-0.4-3/sf/tests/read.Rout.save | 98 ++++++++++++++++++++++++++++++- sf-0.4-3/sf/tests/testthat.Rout.save | 5 - sf-0.4-3/sf/tests/testthat/test_crs.R | 7 ++ sf-0.4-3/sf/tests/testthat/test_lwgeom.R | 2 sf-0.4-3/sf/tests/testthat/test_read.R | 2 sf-0.4-3/sf/tests/testthat/test_write.R | 4 - sf-0.4-3/sf/vignettes/sf.fig |only sf-0.4-3/sf/vignettes/sf_xfig.png |binary 42 files changed, 517 insertions(+), 171 deletions(-)
More information about PROscorerTools at CRAN
Permanent link
Title: Programming with Big Data -- Interface to ZeroMQ
Description: 'ZeroMQ' is a well-known library for high-performance
asynchronous messaging in scalable, distributed applications. This
package provides high level R wrapper functions to easily utilize
'ZeroMQ'. We mainly focus on interactive client/server programming
frameworks. For convenience, a minimal 'ZeroMQ' library (4.1.0 rc1)
is shipped with 'pbdZMQ', which can be used if no system installation
of 'ZeroMQ' is available. A few wrapper functions compatible with
'rzmq' are also provided.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
Christian Heckendorf [aut] (file transfer),
George Ostrouchov [aut] (Mac OSX),
Whit Armstrong [ctb] (some functions are modified from the rzmq package
for backwards compatibility),
Brian Ripley [ctb] (C code of shellexec, and Solaris),
R Core team [ctb] (some functions are modified from the R source code),
Philipp A. [ctb] (Fedora)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdZMQ versions 0.2-5 dated 2016-12-18 and 0.2-6 dated 2017-05-15
ChangeLog | 12 ++++ DESCRIPTION | 14 ++--- INSTALL | 6 -- MD5 | 77 ++++++++++++++-------------- NAMESPACE | 1 R/base_ls.r |only R/pbdZMQ-package.r | 1 README.md | 18 +++++- inst/CITATION | 6 -- inst/doc/pbdZMQ-guide.pdf |binary man/a0_a_pbdZMQ-package.Rd | 9 +-- man/a0_b_control.Rd | 9 +-- man/a0_b_pbd_opt.Rd | 7 +- man/a0_c_options.Rd | 11 +--- man/a0_d_context.Rd | 9 +-- man/a1_socket.Rd | 13 ++-- man/a2_message.Rd | 9 +-- man/address.Rd | 7 +- man/b0_sendrecv.Rd | 9 +-- man/b1_sendrecvfile.Rd | 9 +-- man/b2_sendrecv_multipart.Rd | 9 +-- man/b3_poll.Rd | 11 +--- man/b4_poll2.Rd | 9 +-- man/pyzmq.Rd | 11 +--- man/random_port.Rd | 9 +-- man/u0_shellexec.wcc.Rd | 7 +- man/xx_czmq_wrapper.Rd | 7 +- man/xx_ls_wrapper.Rd |only man/xx_rzmq_wrapper.Rd | 15 ++--- man/xx_utility.Rd | 7 +- man/zz_zmq_control.Rd | 9 +-- src/Makevars.in | 2 src/Makevars.win | 5 + src/zmqsrc.win32/src_Makefile | 13 ++++ src/zmqsrc.win32/src_deps/libzmq_la-zzz.Plo |only src/zmqsrc.win64/src_Makefile | 13 ++++ src/zmqsrc.win64/src_deps/libzmq_la-zzz.Plo |only src/zmqsrc/src/Makefile.am | 3 - src/zmqsrc/src/Makefile.in | 13 ++++ src/zmqsrc/src/zzz.cpp |only src/zzz.c | 1 vignettes/pbdZMQ-include/pbdZMQ.bib | 6 +- 42 files changed, 209 insertions(+), 168 deletions(-)
Title: Methods for Dimension Reduction
Description: Functions for dimension reduction, using MAVE (Minimum Average Variance Estimation), OPG (Outer Product of Gradient) and KSIR (sliced inverse regression of kernel version). Methods for selecting the best dimension are also included.
Author: Hang Weiqiang<E0010758@u.nus.edu>, Xia Yingcun<staxyc@nus.edu.sg>
Maintainer: Hang Weiqiang<E0010758@u.nus.edu>
Diff between MAVE versions 0.1.7 dated 2017-02-01 and 1.1.5 dated 2017-05-15
MAVE-0.1.7/MAVE/R/DIM.R |only MAVE-0.1.7/MAVE/R/print.R |only MAVE-0.1.7/MAVE/inst/doc/Short_introduction_to_method_MAVE.Rnw |only MAVE-0.1.7/MAVE/inst/doc/Short_introduction_to_method_MAVE.pdf |only MAVE-0.1.7/MAVE/man/DIM.Rd |only MAVE-0.1.7/MAVE/man/MAVE.Rd |only MAVE-0.1.7/MAVE/src/CVfast.cpp |only MAVE-0.1.7/MAVE/src/CVfast.h |only MAVE-0.1.7/MAVE/src/CVfast_data.cpp |only MAVE-0.1.7/MAVE/src/CVfast_data.h |only MAVE-0.1.7/MAVE/src/CVfast_emxAPI.cpp |only MAVE-0.1.7/MAVE/src/CVfast_emxAPI.h |only MAVE-0.1.7/MAVE/src/CVfast_emxutil.cpp |only MAVE-0.1.7/MAVE/src/CVfast_emxutil.h |only MAVE-0.1.7/MAVE/src/CVfast_initialize.cpp |only MAVE-0.1.7/MAVE/src/CVfast_initialize.h |only MAVE-0.1.7/MAVE/src/CVfast_need.h |only MAVE-0.1.7/MAVE/src/CVfast_rtwutil.cpp |only MAVE-0.1.7/MAVE/src/CVfast_rtwutil.h |only MAVE-0.1.7/MAVE/src/CVfast_terminate.cpp |only MAVE-0.1.7/MAVE/src/CVfast_terminate.h |only MAVE-0.1.7/MAVE/src/CVfast_types.h |only MAVE-0.1.7/MAVE/src/MAVEfast_need.h |only MAVE-0.1.7/MAVE/src/eml_rand_mt19937ar_stateful.cpp |only MAVE-0.1.7/MAVE/src/eml_rand_mt19937ar_stateful.h |only MAVE-0.1.7/MAVE/src/rand.cpp |only MAVE-0.1.7/MAVE/src/rand.h |only MAVE-0.1.7/MAVE/vignettes/Short_introduction_to_method_MAVE.Rnw |only MAVE-1.1.5/MAVE/DESCRIPTION | 13 MAVE-1.1.5/MAVE/MD5 | 266 MAVE-1.1.5/MAVE/NAMESPACE | 20 MAVE-1.1.5/MAVE/R/M3d2list.R | 9 MAVE-1.1.5/MAVE/R/MAVE.R | 109 MAVE-1.1.5/MAVE/R/MAVE_CV.R |only MAVE-1.1.5/MAVE/R/MAVE_DIR.R |only MAVE-1.1.5/MAVE/R/RcppExports.R | 12 MAVE-1.1.5/MAVE/R/kc_house_data.R |only MAVE-1.1.5/MAVE/R/plot_mave.R |only MAVE-1.1.5/MAVE/R/predict_mave.R |only MAVE-1.1.5/MAVE/R/predict_mave_dim.R |only MAVE-1.1.5/MAVE/R/print_mave.R |only MAVE-1.1.5/MAVE/R/print_mave_cv.R |only MAVE-1.1.5/MAVE/R/spam.R |only MAVE-1.1.5/MAVE/build/vignette.rds |binary MAVE-1.1.5/MAVE/data |only MAVE-1.1.5/MAVE/inst/doc/Short_introduction_to_package_MAVE.R | 20 MAVE-1.1.5/MAVE/inst/doc/Short_introduction_to_package_MAVE.Rnw | 26 MAVE-1.1.5/MAVE/inst/doc/Short_introduction_to_package_MAVE.pdf |binary MAVE-1.1.5/MAVE/man/kc_house_data.Rd |only MAVE-1.1.5/MAVE/man/mave.Rd |only MAVE-1.1.5/MAVE/man/mave.dim.Rd |only MAVE-1.1.5/MAVE/man/mave.dir.Rd |only MAVE-1.1.5/MAVE/man/plot.mave.Rd |only MAVE-1.1.5/MAVE/man/predict.mave.Rd |only MAVE-1.1.5/MAVE/man/predict.mave.dim.Rd |only MAVE-1.1.5/MAVE/man/spam.Rd |only MAVE-1.1.5/MAVE/src/CVfast_R.cpp | 38 MAVE-1.1.5/MAVE/src/MAVEfast.cpp | 5233 +++++----- MAVE-1.1.5/MAVE/src/MAVEfast.h | 9 MAVE-1.1.5/MAVE/src/MAVEfast_R.cpp | 27 MAVE-1.1.5/MAVE/src/MAVEfast_data.cpp |only MAVE-1.1.5/MAVE/src/MAVEfast_data.h |only MAVE-1.1.5/MAVE/src/MAVEfast_emxAPI.cpp |only MAVE-1.1.5/MAVE/src/MAVEfast_emxAPI.h |only MAVE-1.1.5/MAVE/src/MAVEfast_emxutil.cpp |only MAVE-1.1.5/MAVE/src/MAVEfast_emxutil.h |only MAVE-1.1.5/MAVE/src/MAVEfast_initialize.cpp |only MAVE-1.1.5/MAVE/src/MAVEfast_initialize.h |only MAVE-1.1.5/MAVE/src/MAVEfast_rtwutil.cpp |only MAVE-1.1.5/MAVE/src/MAVEfast_rtwutil.h |only MAVE-1.1.5/MAVE/src/MAVEfast_terminate.cpp |only MAVE-1.1.5/MAVE/src/MAVEfast_terminate.h |only MAVE-1.1.5/MAVE/src/MAVEfast_types.h |only MAVE-1.1.5/MAVE/src/Predict_R.cpp |only MAVE-1.1.5/MAVE/src/RcppExports.cpp | 27 MAVE-1.1.5/MAVE/src/abs.cpp | 11 MAVE-1.1.5/MAVE/src/abs.h | 3 MAVE-1.1.5/MAVE/src/colon.cpp |only MAVE-1.1.5/MAVE/src/colon.h |only MAVE-1.1.5/MAVE/src/combine_vector_elements.cpp | 36 MAVE-1.1.5/MAVE/src/combine_vector_elements.h | 5 MAVE-1.1.5/MAVE/src/diag.cpp | 13 MAVE-1.1.5/MAVE/src/diag.h | 3 MAVE-1.1.5/MAVE/src/eig.cpp | 77 MAVE-1.1.5/MAVE/src/eig.h | 3 MAVE-1.1.5/MAVE/src/exp.cpp | 1 MAVE-1.1.5/MAVE/src/exp.h | 3 MAVE-1.1.5/MAVE/src/eye.cpp | 3 MAVE-1.1.5/MAVE/src/eye.h | 3 MAVE-1.1.5/MAVE/src/inv.cpp | 254 MAVE-1.1.5/MAVE/src/inv.h | 3 MAVE-1.1.5/MAVE/src/kron.cpp | 3 MAVE-1.1.5/MAVE/src/kron.h | 3 MAVE-1.1.5/MAVE/src/linspace.cpp | 13 MAVE-1.1.5/MAVE/src/linspace.h | 3 MAVE-1.1.5/MAVE/src/mean.cpp | 77 MAVE-1.1.5/MAVE/src/mean.h | 7 MAVE-1.1.5/MAVE/src/mldivide.cpp |only MAVE-1.1.5/MAVE/src/mldivide.h |only MAVE-1.1.5/MAVE/src/norm.cpp |only MAVE-1.1.5/MAVE/src/norm.h |only MAVE-1.1.5/MAVE/src/power.cpp | 3 MAVE-1.1.5/MAVE/src/power.h | 3 MAVE-1.1.5/MAVE/src/prctile.cpp | 7 MAVE-1.1.5/MAVE/src/prctile.h | 3 MAVE-1.1.5/MAVE/src/quantile.cpp | 13 MAVE-1.1.5/MAVE/src/quantile.h | 3 MAVE-1.1.5/MAVE/src/rdivide.cpp | 13 MAVE-1.1.5/MAVE/src/rdivide.h | 3 MAVE-1.1.5/MAVE/src/registerDynamicSymbol.cpp |only MAVE-1.1.5/MAVE/src/relop.cpp | 3 MAVE-1.1.5/MAVE/src/relop.h | 2 MAVE-1.1.5/MAVE/src/repmat.cpp | 47 MAVE-1.1.5/MAVE/src/repmat.h | 3 MAVE-1.1.5/MAVE/src/rtGetInf.cpp | 2 MAVE-1.1.5/MAVE/src/rtGetInf.h | 2 MAVE-1.1.5/MAVE/src/rtGetNaN.cpp | 2 MAVE-1.1.5/MAVE/src/rtGetNaN.h | 2 MAVE-1.1.5/MAVE/src/rt_defines.h | 2 MAVE-1.1.5/MAVE/src/rt_nonfinite.cpp | 2 MAVE-1.1.5/MAVE/src/rt_nonfinite.h | 2 MAVE-1.1.5/MAVE/src/rtwtypes.h | 29 MAVE-1.1.5/MAVE/src/schur.cpp | 7 MAVE-1.1.5/MAVE/src/schur.h | 3 MAVE-1.1.5/MAVE/src/sort1.cpp | 360 MAVE-1.1.5/MAVE/src/sort1.h | 10 MAVE-1.1.5/MAVE/src/sortIdx.cpp | 191 MAVE-1.1.5/MAVE/src/sortIdx.h | 3 MAVE-1.1.5/MAVE/src/sqrt.cpp | 5 MAVE-1.1.5/MAVE/src/sqrt.h | 3 MAVE-1.1.5/MAVE/src/std.cpp | 33 MAVE-1.1.5/MAVE/src/std.h | 3 MAVE-1.1.5/MAVE/src/strcmp.cpp | 29 MAVE-1.1.5/MAVE/src/strcmp.h | 3 MAVE-1.1.5/MAVE/src/sum.cpp | 13 MAVE-1.1.5/MAVE/src/sum.h | 7 MAVE-1.1.5/MAVE/src/upper.cpp |only MAVE-1.1.5/MAVE/src/upper.h |only MAVE-1.1.5/MAVE/src/xdhseqr.cpp | 3 MAVE-1.1.5/MAVE/src/xdhseqr.h | 3 MAVE-1.1.5/MAVE/src/xdlanv2.cpp | 5 MAVE-1.1.5/MAVE/src/xdlanv2.h | 3 MAVE-1.1.5/MAVE/src/xgehrd.cpp | 104 MAVE-1.1.5/MAVE/src/xgehrd.h | 3 MAVE-1.1.5/MAVE/src/xgeqp3.cpp |only MAVE-1.1.5/MAVE/src/xgeqp3.h |only MAVE-1.1.5/MAVE/src/xnrm2.cpp | 1 MAVE-1.1.5/MAVE/src/xnrm2.h | 3 MAVE-1.1.5/MAVE/src/xrot.cpp | 1 MAVE-1.1.5/MAVE/src/xrot.h | 3 MAVE-1.1.5/MAVE/src/xscal.cpp | 7 MAVE-1.1.5/MAVE/src/xscal.h | 3 MAVE-1.1.5/MAVE/src/xtrsm.cpp |only MAVE-1.1.5/MAVE/src/xtrsm.h |only MAVE-1.1.5/MAVE/src/xzgetrf.cpp |only MAVE-1.1.5/MAVE/src/xzgetrf.h |only MAVE-1.1.5/MAVE/src/xzggbal.cpp | 3 MAVE-1.1.5/MAVE/src/xzggbal.h | 3 MAVE-1.1.5/MAVE/src/xzggev.cpp | 9 MAVE-1.1.5/MAVE/src/xzggev.h | 3 MAVE-1.1.5/MAVE/src/xzhgeqz.cpp | 3 MAVE-1.1.5/MAVE/src/xzhgeqz.h | 3 MAVE-1.1.5/MAVE/src/xzlarf.cpp | 11 MAVE-1.1.5/MAVE/src/xzlarf.h | 3 MAVE-1.1.5/MAVE/src/xzlarfg.cpp | 55 MAVE-1.1.5/MAVE/src/xzlarfg.h | 6 MAVE-1.1.5/MAVE/src/xzlartg.cpp | 5 MAVE-1.1.5/MAVE/src/xzlartg.h | 3 MAVE-1.1.5/MAVE/src/xztgevc.cpp | 37 MAVE-1.1.5/MAVE/src/xztgevc.h | 3 MAVE-1.1.5/MAVE/vignettes/Short_introduction_to_package_MAVE.Rnw | 26 171 files changed, 3642 insertions(+), 3819 deletions(-)