Title: Weighted Correlations
Description: Calculates Pearson, Spearman, polychoric, and polyserial correlation coefficients, in weighted or unweighted form. The package implements tetrachoric correlation as a special case of the polychoric and biserial correlation as a specific case of the polyserial.
Author: Ahmad Emad & Paul Bailey
Maintainer: Paul Bailey <pbailey@air.org>
Diff between wCorr versions 1.8.0 dated 2016-05-18 and 1.9.1 dated 2017-05-17
wCorr-1.8.0/wCorr/inst/doc/wCorrArguments.pdf |only wCorr-1.8.0/wCorr/inst/doc/wCorrFormulas.pdf |only wCorr-1.9.1/wCorr/DESCRIPTION | 14 wCorr-1.9.1/wCorr/MD5 | 56 +- wCorr-1.9.1/wCorr/NAMESPACE | 34 - wCorr-1.9.1/wCorr/R/RcppExports.R | 150 ++--- wCorr-1.9.1/wCorr/R/contCorr.R | 46 - wCorr-1.9.1/wCorr/R/contCorrFast.R | 40 - wCorr-1.9.1/wCorr/R/polycFast.R | 154 ++--- wCorr-1.9.1/wCorr/R/polycSlow.R | 292 +++++------ wCorr-1.9.1/wCorr/R/polysFast.R | 76 +- wCorr-1.9.1/wCorr/R/polysSlow.R | 146 ++--- wCorr-1.9.1/wCorr/R/sim.R | 663 ++++++++++++------------- wCorr-1.9.1/wCorr/R/wCorr-package.R | 14 wCorr-1.9.1/wCorr/R/wCorrSim.R | 492 +++++++++--------- wCorr-1.9.1/wCorr/R/weightedCorr.R | 250 ++++----- wCorr-1.9.1/wCorr/R/wrank.R | 174 +++--- wCorr-1.9.1/wCorr/R/zzz.R | 6 wCorr-1.9.1/wCorr/build/vignette.rds |binary wCorr-1.9.1/wCorr/inst/NEWS.Rd |only wCorr-1.9.1/wCorr/inst/doc/wCorrArguments.R | 261 ++++----- wCorr-1.9.1/wCorr/inst/doc/wCorrArguments.Rmd | 555 ++++++++++---------- wCorr-1.9.1/wCorr/inst/doc/wCorrArguments.html |only wCorr-1.9.1/wCorr/inst/doc/wCorrFormulas.R | 291 +++++----- wCorr-1.9.1/wCorr/inst/doc/wCorrFormulas.Rmd | 95 +-- wCorr-1.9.1/wCorr/inst/doc/wCorrFormulas.html |only wCorr-1.9.1/wCorr/man/wCorr-package.Rd | 19 wCorr-1.9.1/wCorr/man/weightedCorr.Rd | 155 ++--- wCorr-1.9.1/wCorr/src/RcppExports.cpp | 146 ++--- wCorr-1.9.1/wCorr/src/init.c |only wCorr-1.9.1/wCorr/vignettes/wCorrArguments.Rmd | 555 ++++++++++---------- wCorr-1.9.1/wCorr/vignettes/wCorrFormulas.Rmd | 95 +-- 32 files changed, 2406 insertions(+), 2373 deletions(-)
Title: Matched Samples that are Balanced and Representative by Design
Description: Includes functions for the construction of matched samples that are balanced and representative by design. Among others, these functions can be used for matching in observational studies with treated and control units, with cases and controls, in related settings with instrumental variables, and in discontinuity designs. Also, they can be used for the design of randomized experiments, for example, for matching before randomization. By default, 'designmatch' uses the 'GLPK' optimization solver, but its performance is greatly enhanced by the 'Gurobi' optimization solver and its associated R interface. For their installation, please follow the instructions at <http://user.gurobi.com/download/gurobi-optimizer> and <http://www.gurobi.com/documentation/7.0/refman/r_api_overview.html>. We have also included directions in the gurobi_installation file in the inst folder.
Author: Jose R. Zubizarreta <zubizarreta@columbia.edu>, Cinar Kilcioglu <ckilcioglu16@gsb.columbia.edu>, Juan P. Vielma <jvielma@mit.edu>
Maintainer: Jose R. Zubizarreta <zubizarreta@columbia.edu>
Diff between designmatch versions 0.2.0 dated 2016-08-11 and 0.3.0 dated 2017-05-17
designmatch-0.2.0/designmatch/R/absstddif.R |only designmatch-0.2.0/designmatch/R/distmat.R |only designmatch-0.2.0/designmatch/R/ecdfplot.R |only designmatch-0.2.0/designmatch/R/finetab.R |only designmatch-0.2.0/designmatch/R/loveplot.R |only designmatch-0.2.0/designmatch/R/meantab.R |only designmatch-0.3.0/designmatch/DESCRIPTION | 16 +++---- designmatch-0.3.0/designmatch/MD5 | 21 ++++++---- designmatch-0.3.0/designmatch/R/absstddif.r |only designmatch-0.3.0/designmatch/R/cardmatch.r |only designmatch-0.3.0/designmatch/R/distmat.r |only designmatch-0.3.0/designmatch/R/distmatch.r |only designmatch-0.3.0/designmatch/R/ecdfplot.r |only designmatch-0.3.0/designmatch/R/finetab.r |only designmatch-0.3.0/designmatch/R/loveplot.r |only designmatch-0.3.0/designmatch/R/meantab.r |only designmatch-0.3.0/designmatch/R/problemparameters_cardmatch.r |only designmatch-0.3.0/designmatch/inst/gurobi_installation.txt | 14 +++--- designmatch-0.3.0/designmatch/man/cardmatch.Rd |only designmatch-0.3.0/designmatch/man/distmatch.Rd |only 20 files changed, 27 insertions(+), 24 deletions(-)
Title: ROI Plug-in SYMPHONY
Description: Enhances the R Optimization Infrastructure ('ROI') package by registering
the 'SYMPHONY' open-source solver from the COIN-OR suite. It allows for
solving mixed integer linear programming (MILP) problems as well as all
variants/combinations of LP, IP.
Author: Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl <Stefan.Theussl@R-Project.org>
Diff between ROI.plugin.symphony versions 0.2-1 dated 2016-06-18 and 0.2-5 dated 2017-05-17
DESCRIPTION | 15 ++++---- MD5 | 7 ++- R/plugin.R | 112 ++++++++++++++++++++++++++++++++++++++---------------------- R/zzz.R | 10 ++--- man |only 5 files changed, 89 insertions(+), 55 deletions(-)
More information about ROI.plugin.symphony at CRAN
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Title: ROI Plug-in {quadprog}
Description: Enhances the R Optimization Infrastructure ('ROI') package
by registering the 'quadprog' solver. It allows for solving quadratic programming (QP)
problems.
Author: Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl <Stefan.Theussl@R-Project.org>
Diff between ROI.plugin.quadprog versions 0.2-1 dated 2016-06-18 and 0.2-5 dated 2017-05-17
DESCRIPTION | 14 +++++++------- MD5 | 7 ++++--- R/plugin.R | 16 ++++++++-------- R/zzz.R | 10 +++++----- man |only 5 files changed, 24 insertions(+), 23 deletions(-)
More information about ROI.plugin.quadprog at CRAN
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More information about ROI.plugin.optimx at CRAN
Permanent link
More information about ROI.plugin.msbinlp at CRAN
Permanent link
Title: ROI Plug-in {ipop}
Description: Enhances the R Optimization Infrastructure ('ROI') package
by registering the ipop solver from package 'kernlab'.
Author: Florian Schwendinger [ctb],
Stefan Theussl [aut, cre],
Diethelm Wuertz [ctb]
Maintainer: Stefan Theussl <Stefan.Theussl@R-Project.org>
Diff between ROI.plugin.ipop versions 0.2-1 dated 2016-06-20 and 0.2-5 dated 2017-05-17
DESCRIPTION | 10 +++++----- MD5 | 9 +++++---- NAMESPACE | 2 +- R/plugin.R | 34 +++++++++++++++++----------------- R/zzz.R | 14 +++++++------- man |only 6 files changed, 35 insertions(+), 34 deletions(-)
More information about ROI.plugin.ipop at CRAN
Permanent link
Title: ROI Plug-in CPLEX
Description: Enhances the R Optimization Infrastructure (ROI) package by registering
the 'CPLEX' commercial solver. It allows for solving mixed integer quadratically
constrained programming (MIQPQC) problems as well as all
variants/combinations of LP, QP, QCP, IP.
Author: Stefan Theussl [aut, cre],
Florian Schwendinger [ctb]
Maintainer: Stefan Theussl <Stefan.Theussl@R-Project.org>
Diff between ROI.plugin.cplex versions 0.2-1 dated 2016-06-22 and 0.2-5 dated 2017-05-17
DESCRIPTION | 17 +++---- MD5 | 13 +++-- NAMESPACE | 2 R/control.R | 42 +++++++++--------- R/plugin.R | 12 ++--- R/status_code.R | 130 ++++++++++++++++++++++++++++---------------------------- R/zzz.R | 8 +-- man |only 8 files changed, 113 insertions(+), 111 deletions(-)
More information about ROI.plugin.cplex at CRAN
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More information about ROI.plugin.alabama at CRAN
Permanent link
Title: R Optimization Infrastructure
Description: The R Optimization Infrastructure ('ROI') is a
sophisticated framework for handling optimization problems in R.
Author: Kurt Hornik [aut],
David Meyer [aut],
Florian Schwendinger [aut],
Stefan Theussl [aut, cre],
Diethelm Wuertz [ctb]
Maintainer: Stefan Theussl <Stefan.Theussl@R-Project.org>
Diff between ROI versions 0.2-1 dated 2016-06-18 and 0.2-5 dated 2017-05-17
ROI-0.2-1/ROI/inst/tests |only ROI-0.2-1/ROI/man/C_bound.Rd |only ROI-0.2-5/ROI/DESCRIPTION | 18 ROI-0.2-5/ROI/MD5 | 175 +-- ROI-0.2-5/ROI/NAMESPACE | 127 +- ROI-0.2-5/ROI/R/OP.R | 208 ++- ROI-0.2-5/ROI/R/bounds.R | 236 ---- ROI-0.2-5/ROI/R/constraints.R | 615 +++++++++-- ROI-0.2-5/ROI/R/gradient.R | 80 + ROI-0.2-5/ROI/R/io_tools.R |only ROI-0.2-5/ROI/R/maximum.R |only ROI-0.2-5/ROI/R/objective.R | 129 +- ROI-0.2-5/ROI/R/plugin.R | 299 ++++- ROI-0.2-5/ROI/R/plugin_nlminb.R | 42 ROI-0.2-5/ROI/R/reformulations.R |only ROI-0.2-5/ROI/R/roi.R | 142 +- ROI-0.2-5/ROI/R/solution.R | 201 +++ ROI-0.2-5/ROI/R/solver.R | 67 - ROI-0.2-5/ROI/R/types.R | 58 - ROI-0.2-5/ROI/R/utilities.R | 46 ROI-0.2-5/ROI/R/zzz.R | 109 + ROI-0.2-5/ROI/inst/ROI_Tests |only ROI-0.2-5/ROI/man/Bounds_Accessor_Mutator.Rd | 5 ROI-0.2-5/ROI/man/C_constraint.Rd |only ROI-0.2-5/ROI/man/F_constraint.Rd | 12 ROI-0.2-5/ROI/man/F_objective.Rd | 9 ROI-0.2-5/ROI/man/G.Rd | 32 ROI-0.2-5/ROI/man/J.Rd | 1 ROI-0.2-5/ROI/man/L_constraint.Rd | 5 ROI-0.2-5/ROI/man/L_objective.Rd | 3 ROI-0.2-5/ROI/man/NO_constraint.Rd | 1 ROI-0.2-5/ROI/man/OP.Rd | 1 ROI-0.2-5/ROI/man/OP_signature.Rd |only ROI-0.2-5/ROI/man/Q_constraint.Rd | 5 ROI-0.2-5/ROI/man/Q_objective.Rd | 3 ROI-0.2-5/ROI/man/ROI_applicable_solvers.Rd | 1 ROI-0.2-5/ROI/man/ROI_available_solvers.Rd |only ROI-0.2-5/ROI/man/ROI_bound.Rd | 8 ROI-0.2-5/ROI/man/ROI_constraint.Rd | 10 ROI-0.2-5/ROI/man/ROI_options.Rd | 1 ROI-0.2-5/ROI/man/ROI_plugin_add_status_code_to_db.Rd | 29 ROI-0.2-5/ROI/man/ROI_plugin_build_equality_constraints.Rd |only ROI-0.2-5/ROI/man/ROI_plugin_build_inequality_constraints.Rd |only ROI-0.2-5/ROI/man/ROI_plugin_canonicalize_solution.Rd | 20 ROI-0.2-5/ROI/man/ROI_plugin_get_solver_name.Rd | 20 ROI-0.2-5/ROI/man/ROI_plugin_make_signature.Rd | 35 ROI-0.2-5/ROI/man/ROI_plugin_register_reader_writer.Rd |only ROI-0.2-5/ROI/man/ROI_plugin_register_reformulation.Rd |only ROI-0.2-5/ROI/man/ROI_plugin_register_solver_control.Rd | 20 ROI-0.2-5/ROI/man/ROI_plugin_register_solver_method.Rd | 20 ROI-0.2-5/ROI/man/ROI_plugin_solution.Rd |only ROI-0.2-5/ROI/man/ROI_reformulate.Rd |only ROI-0.2-5/ROI/man/ROI_registered_reader.Rd |only ROI-0.2-5/ROI/man/ROI_registered_reformulations.Rd |only ROI-0.2-5/ROI/man/ROI_registered_solvers.Rd | 9 ROI-0.2-5/ROI/man/ROI_registered_writer.Rd |only ROI-0.2-5/ROI/man/ROI_solve.Rd | 1 ROI-0.2-5/ROI/man/ROI_solver_signature.Rd |only ROI-0.2-5/ROI/man/US30.Rd | 1 ROI-0.2-5/ROI/man/V_bound.Rd | 6 ROI-0.2-5/ROI/man/as.L_term.Rd | 9 ROI-0.2-5/ROI/man/as.Q_term.Rd | 13 ROI-0.2-5/ROI/man/cone.Rd |only ROI-0.2-5/ROI/man/constraints.Rd | 20 ROI-0.2-5/ROI/man/equal.Rd | 11 ROI-0.2-5/ROI/man/maximum.Rd |only ROI-0.2-5/ROI/man/nlminb2.Rd | 1 ROI-0.2-5/ROI/man/objective.Rd | 24 ROI-0.2-5/ROI/man/rbind.constraint.Rd | 8 ROI-0.2-5/ROI/man/read.op.Rd |only ROI-0.2-5/ROI/man/signs.Rd |only ROI-0.2-5/ROI/man/solution.Rd | 8 ROI-0.2-5/ROI/man/types.Rd | 27 ROI-0.2-5/ROI/man/vech.Rd | 1 ROI-0.2-5/ROI/man/write.op.Rd |only ROI-0.2-5/ROI/tests |only 76 files changed, 2024 insertions(+), 908 deletions(-)
Title: Find, Map, and Gather Environmental Data and Metadata
Description: A tool for locating, mapping, and gathering environmental data and metadata, worldwide. Users can search for and filter metadata from ~ 107,000 environmental monitoring stations among 219 countries/territories and 18 networks/platforms via elevation, location, active dates, elements measured (e.g., temperature, precipitation), country, network, and/or known identifier. Future updates to the package will allow the user to obtain datasets from stations within the database.
Author: Josh Roberti [aut, cre],
Cody Flagg [aut],
Lee Stanish [aut],
Sam Weintraub [aut],
Derek Smith [aut],
Robert Lee [aut]
Maintainer: Josh Roberti <jaroberti87@gmail.com>
Diff between metScanR versions 0.0.1 dated 2017-01-18 and 1.0.0 dated 2017-05-17
metScanR-0.0.1/metScanR/R/metScanR.r |only metScanR-0.0.1/metScanR/data/NEON_masterTraceability.rda |only metScanR-0.0.1/metScanR/data/NOAA_NCEI_masterTraceability.rda |only metScanR-0.0.1/metScanR/data/NRCS_masterTraceability.rda |only metScanR-0.0.1/metScanR/man/NEON_masterTraceability.Rd |only metScanR-0.0.1/metScanR/man/NOAA_NCEI_masterTraceability.Rd |only metScanR-0.0.1/metScanR/man/NRCS_masterTraceability.Rd |only metScanR-1.0.0/metScanR/DESCRIPTION | 25 metScanR-1.0.0/metScanR/MD5 | 39 metScanR-1.0.0/metScanR/NAMESPACE | 7 metScanR-1.0.0/metScanR/R/data.R |only metScanR-1.0.0/metScanR/R/getCountry.R |only metScanR-1.0.0/metScanR/R/getDates.R |only metScanR-1.0.0/metScanR/R/getElevation.R |only metScanR-1.0.0/metScanR/R/getId.R |only metScanR-1.0.0/metScanR/R/getNearby.R |only metScanR-1.0.0/metScanR/R/getNetwork.R |only metScanR-1.0.0/metScanR/R/getVars.R |only metScanR-1.0.0/metScanR/R/mapSiteFinder.R | 245 +++-- metScanR-1.0.0/metScanR/R/siteFinder.R | 474 ++-------- metScanR-1.0.0/metScanR/R/zzz.R |only metScanR-1.0.0/metScanR/data/datalist |only metScanR-1.0.0/metScanR/data/metScanR_terms.rda |only metScanR-1.0.0/metScanR/man/getCountry.Rd |only metScanR-1.0.0/metScanR/man/getDates.Rd |only metScanR-1.0.0/metScanR/man/getElevation.Rd |only metScanR-1.0.0/metScanR/man/getId.Rd |only metScanR-1.0.0/metScanR/man/getNearby.Rd |only metScanR-1.0.0/metScanR/man/getNetwork.Rd |only metScanR-1.0.0/metScanR/man/getVars.Rd |only metScanR-1.0.0/metScanR/man/mapSiteFinder.Rd | 35 metScanR-1.0.0/metScanR/man/metScanR_DB.Rd |only metScanR-1.0.0/metScanR/man/metScanR_terms.Rd |only metScanR-1.0.0/metScanR/man/siteFinder.Rd | 129 +- 34 files changed, 401 insertions(+), 553 deletions(-)
Title: 'SCS' Plugin for the 'R' Optimization Infrastructure
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the 'SCS' solver for solving convex cone problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.scs versions 0.2-3 dated 2016-12-30 and 0.2-5 dated 2017-05-17
DESCRIPTION | 8 - MD5 | 18 +-- NAMESPACE | 4 R/plugin.R | 260 ++++++++++++++++++++++++++++-------------------------- R/status_codes.R | 22 ++-- R/zzz.R | 32 +++--- man/Example_01.Rd | 4 man/Example_02.Rd | 5 - man/Example_03.Rd | 8 - tests/test_scs.R | 100 ++++++++++---------- 10 files changed, 238 insertions(+), 223 deletions(-)
More information about ROI.plugin.scs at CRAN
Permanent link
Title: 'ROI'-Plugin 'NLOPTR'
Description: Enhances the R Optimization Infrastructure ('ROI') package
with the 'NLopt' solver for solving nonlinear optimization problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.nloptr versions 0.2-4 dated 2016-08-17 and 0.2-5 dated 2017-05-17
ROI.plugin.nloptr-0.2-4/ROI.plugin.nloptr/R/constraints.R |only ROI.plugin.nloptr-0.2-5/ROI.plugin.nloptr/DESCRIPTION | 8 ROI.plugin.nloptr-0.2-5/ROI.plugin.nloptr/MD5 | 11 ROI.plugin.nloptr-0.2-5/ROI.plugin.nloptr/R/solve.R | 186 ++++++---- ROI.plugin.nloptr-0.2-5/ROI.plugin.nloptr/R/status_codes.R | 24 - ROI.plugin.nloptr-0.2-5/ROI.plugin.nloptr/R/zzz.R | 45 +- ROI.plugin.nloptr-0.2-5/ROI.plugin.nloptr/tests/test_nloptr.R | 77 +--- 7 files changed, 197 insertions(+), 154 deletions(-)
More information about ROI.plugin.nloptr at CRAN
Permanent link
Title: 'lp_solve' Plugin for the 'R' Optimization Interface
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the 'lp_solve' solver.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.lpsolve versions 0.0-1 dated 2016-12-19 and 0.2-5 dated 2017-05-17
DESCRIPTION | 8 +- MD5 | 10 +-- NAMESPACE | 2 R/plugin.R | 167 ++++++++++++++++++++++++++++++++++++++++++++----------- R/status_codes.R | 28 ++++----- R/zzz.R | 88 ++++++++++++++++------------ 6 files changed, 209 insertions(+), 94 deletions(-)
More information about ROI.plugin.lpsolve at CRAN
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Title: 'ECOS' Plugin for the 'R' Optimization Infrastructure
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the Embedded Conic Solver ('ECOS') for solving conic optimization problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.ecos versions 0.2-4 dated 2016-12-30 and 0.2-5 dated 2017-05-17
DESCRIPTION | 8 - MD5 | 16 +-- NAMESPACE | 4 R/plugin.R | 287 +++++++++++++++++++++++++++--------------------------- R/zzz.R | 42 +++---- man/Example_01.Rd | 6 - man/Example_02.Rd | 8 - man/Example_03.Rd | 5 tests/test_ecos.R | 56 +++++----- 9 files changed, 221 insertions(+), 211 deletions(-)
More information about ROI.plugin.ecos at CRAN
Permanent link
Title: Accessing Environmental Data from ERD's ERDDAP Server
Description: Contains three functions that access
environmental data from ERD's ERDDAP service <http://coastwatch.pfeg.noaa.gov/erddap>. The xtracto() function extracts
data along a trajectory for a given "radius" around the point. The
xtracto_3D() function extracts data in a box. The xtractogon() function
extracts data in a polygon. There are also two helper functions to obtain
information about available data.
Author: Roy Mendelssohn [aut, cre],
Cindy Bessey [ctb],
Dave Foley [ctb]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between xtractomatic versions 3.3.0 dated 2017-05-16 and 3.3.1 dated 2017-05-17
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- NEWS.md | 3 +++ R/searchData.R | 4 ++-- R/sysdata.rda |binary R/xtracto.R | 4 ++-- R/xtracto_3D.R | 6 +++--- inst/doc/Usingxtractomatic.R | 2 +- inst/doc/Usingxtractomatic.Rmd | 2 +- inst/doc/Usingxtractomatic.html | 18 +++++++++--------- man/searchData.Rd | 4 ++-- man/xtracto.Rd | 4 ++-- man/xtracto_3D.Rd | 6 +++--- vignettes/Usingxtractomatic.Rmd | 2 +- 14 files changed, 45 insertions(+), 42 deletions(-)
Title: Tools to Easily Read/Write NetCDF Files into/from
Multidimensional R Arrays
Description: Set of wrappers for the 'ncdf4' package to simplify and extend its reading/writing capabilities into/from multidimensional R arrays.
Author: BSC-CNS [aut, cph],
Nicolau Manubens [aut, cre]
Maintainer: Nicolau Manubens <nicolau.manubens@bsc.es>
Diff between easyNCDF versions 0.0.1 dated 2017-04-07 and 0.0.4 dated 2017-05-17
DESCRIPTION | 6 ++--- MD5 | 8 +++--- R/NcReadDims.R | 5 ++++ R/NcToArray.R | 66 ++++++++++++++++++++++++++++++++----------------------- man/NcToArray.Rd | 26 +++++++++++++++++++-- 5 files changed, 74 insertions(+), 37 deletions(-)
Title: Continuous Time Structural Equation Modelling
Description: A multivariate continuous (and discrete) time dynamic modelling
package for panel and time series data, using linear stochastic differential
equations. Contains a faster frequentist set of functions using OpenMx for
single subject and mixed-effects (random intercepts only) structural
equation models, or a hierarchical Bayesian implementation using Stan that
allows for random effects over all model parameters. Allows for modelling of
multiple noisy measurements of multiple stochastic processes, time varying
input / event covariates, and time invariant covariates used to predict the
parameters.
Author: Charles Driver [aut, cre, cph],
Manuel Voelkle [aut, cph],
Han Oud [aut, cph]
Maintainer: Charles Driver <driver@mpib-berlin.mpg.de>
Diff between ctsem versions 2.3.1 dated 2017-04-06 and 2.4.0 dated 2017-05-17
DESCRIPTION | 8 - MD5 | 73 ++++++++------ NAMESPACE | 4 NEWS | 15 ++- R/carefulFit.R | 30 +++--- R/ctDataHelp.R | 4 R/ctDeintervalise.R | 12 +- R/ctDiscretiseData.R |only R/ctFit.R | 135 ++++++++++++++------------- R/ctGenerate.R | 25 ++--- R/ctGenerateFromFit.R |only R/ctIndplot.R | 30 ++++-- R/ctKalman.R | 5 - R/ctModel.R | 2 R/ctPlotArray.R |only R/ctPostPredict.R |only R/ctStanFit.R | 192 +++++++++++++++------------------------ R/ctStanFitTV.R |only R/ctStanTIpredeffects.R | 134 --------------------------- R/plot.ctStanModel.R | 2 R/stanWplot.R |only R/summary.ctsemFit.R | 17 ++- build/vignette.rds |binary inst/doc/ctsem.R | 7 - inst/doc/ctsem.pdf |binary inst/doc/ctsem.rnw | 7 - inst/doc/hierarchical.pdf |binary man/ctDiscretiseData.Rd |only man/ctGenerate.Rd | 6 - man/ctGenerateFromFit.Rd |only man/ctIndplot.Rd | 23 +++- man/ctModel.Rd | 2 man/ctPlotArray.Rd | 2 man/ctPostPredict.Rd |only man/ctStanFit.Rd | 6 - man/ctStanFitTV.Rd |only man/ctStanTIpredeffects.Rd | 2 man/ctstantestdat.Rd | 2 man/ctstantestfit.Rd | 2 man/stanWplot.Rd |only tests/testthat/differenttraits.R | 21 +++- tests/testthat/kalmanVram.R |only tests/testthat/singleprocess.R |only vignettes/ctsem.rnw | 7 - 44 files changed, 341 insertions(+), 434 deletions(-)
Title: Easily Install and Load Stable Zelig Packages
Description: Provides an easy way to load stable Core Zelig and ancillary Zelig
packages.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <zelig.zee@gmail.com>
Diff between zeligverse versions 0.1.0 dated 2017-05-04 and 0.1.1 dated 2017-05-17
DESCRIPTION | 15 ++++++++------- MD5 | 13 ++++++++----- NAMESPACE | 9 +++++++++ NEWS.md | 9 +++++---- R/attach.R | 3 ++- R/update.R |only README.md | 27 +++++++++++++++++++++------ man/zeligverse_deps.Rd |only man/zeligverse_update.Rd |only 9 files changed, 53 insertions(+), 23 deletions(-)
Title: Semi-Parametric Sample Selection Modelling with Continuous or
Discrete Response
Description: Routine for fitting continuous or discrete response copula sample selection models with semi-parametric predictors, including linear and nonlinear effects.
Author: Giampiero Marra, Rosalba Radice, Malgorzata Wojtys and Karol Wyszynski
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between SemiParSampleSel versions 1.4 dated 2016-08-01 and 1.5 dated 2017-05-17
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++------- NAMESPACE | 2 +- R/theta.tau.r | 10 +++++----- data |only inst/CITATION | 33 ++++++++------------------------- man/SOEP.Rd |only man/SemiParSampleSel.Rd | 5 ++--- man/resp.check.Rd | 3 +++ 10 files changed, 35 insertions(+), 45 deletions(-)
More information about SemiParSampleSel at CRAN
Permanent link
Title: An R Port of the 'ImageJ' Plugin 'Auto Threshold'
Description: Provides the 'ImageJ' 'Auto Threshold' plugin functionality to R users.
See <http://imagej.net/Auto_Threshold> and Landini et al. (2017) <DOI:10.1111/jmi.12474>.
Author: Rory Nolan [aut, cre, trl],
Luis Alvarez [ctb],
Sergi Padilla-Parra [ctb, ths],
Gabriel Landini [ctb, cph]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between autothresholdr versions 0.4.0 dated 2017-04-23 and 0.5.0 dated 2017-05-17
autothresholdr-0.4.0/autothresholdr/man/MeanPillars.Rd |only autothresholdr-0.4.0/autothresholdr/man/MeanStackThresh.Rd |only autothresholdr-0.5.0/autothresholdr/DESCRIPTION | 6 - autothresholdr-0.5.0/autothresholdr/MD5 | 34 +++--- autothresholdr-0.5.0/autothresholdr/NAMESPACE | 12 +- autothresholdr-0.5.0/autothresholdr/NEWS.md | 5 autothresholdr-0.5.0/autothresholdr/R/RcppExports.R | 32 ++--- autothresholdr-0.5.0/autothresholdr/R/autothresholdr.R | 2 autothresholdr-0.5.0/autothresholdr/R/stack_thresh.R | 40 +++---- autothresholdr-0.5.0/autothresholdr/inst/doc/autothresholdr.R | 4 autothresholdr-0.5.0/autothresholdr/inst/doc/autothresholdr.Rmd | 4 autothresholdr-0.5.0/autothresholdr/inst/doc/autothresholdr.html | 8 - autothresholdr-0.5.0/autothresholdr/inst/include/autothresholdr_RcppExports.h | 42 +++---- autothresholdr-0.5.0/autothresholdr/man/mean_pillars.Rd |only autothresholdr-0.5.0/autothresholdr/man/mean_stack_thresh.Rd |only autothresholdr-0.5.0/autothresholdr/src/RcppExports.cpp | 54 +++++----- autothresholdr-0.5.0/autothresholdr/src/init.c | 16 +- autothresholdr-0.5.0/autothresholdr/src/pillar_stats.cpp | 38 +++---- autothresholdr-0.5.0/autothresholdr/tests/testthat/test_stack_thresh.R | 12 +- autothresholdr-0.5.0/autothresholdr/vignettes/autothresholdr.Rmd | 4 20 files changed, 157 insertions(+), 156 deletions(-)
More information about autothresholdr at CRAN
Permanent link
Title: Spatial Extent as Polygons with Projection
Description: Functions to produce a fully fledged 'Spatial' object extent as a
'SpatialPolygonsDataFrame'. Also included are functions to generate polygons
from raster using 'quadmesh' techniques, and a round number buffered extent for
generating data structures.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between spex versions 0.1.0 dated 2016-09-02 and 0.3.0 dated 2017-05-17
DESCRIPTION | 16 +-- MD5 | 28 +++-- NAMESPACE | 37 +++++-- NEWS.md |only R/buffer_extent.R |only R/qm_rasterToPolygons.r |only R/spex-package.r | 49 +++++---- R/spex.R | 154 ++++++++++++++---------------- README.md | 171 +++++++++++++++++++++------------ man/as_double.Rd |only man/buffer_extent.Rd |only man/lux.Rd | 39 ++++--- man/polygonize.Rd |only man/spex.Rd | 177 ++++++++++++++++------------------- tests/testthat.R | 8 - tests/testthat/test-buffer.R |only tests/testthat/test-sf-from-raster.R |only tests/testthat/test-spex-any.R | 14 +- tests/testthat/test-spex-extent.R | 22 ++-- 19 files changed, 389 insertions(+), 326 deletions(-)
Title: API Client Library for 'Wikidata'
Description: An API client for the Wikidata <http://wikidata.org/> store of
semantic data.
Author: Oliver Keyes [aut, cre], Serena Signorelli [aut, cre],
Christian Graul [ctb]
Maintainer: Oliver Keyes <ironholds@gmail.com>
Diff between WikidataR versions 1.2.0 dated 2017-02-05 and 1.3.0 dated 2017-05-17
WikidataR-1.2.0/WikidataR/vignettes/Introduction.md |only WikidataR-1.3.0/WikidataR/DESCRIPTION | 10 ++--- WikidataR-1.3.0/WikidataR/MD5 | 26 ++++++------- WikidataR-1.3.0/WikidataR/NAMESPACE | 1 WikidataR-1.3.0/WikidataR/NEWS | 4 +- WikidataR-1.3.0/WikidataR/R/gets.R | 19 ++++++--- WikidataR-1.3.0/WikidataR/R/prints.R | 26 ++++++++----- WikidataR-1.3.0/WikidataR/R/utils.R | 37 ++++++++++++++++++- WikidataR-1.3.0/WikidataR/README.md | 4 +- WikidataR-1.3.0/WikidataR/build/vignette.rds |binary WikidataR-1.3.0/WikidataR/inst/doc/Introduction.Rmd | 2 - WikidataR-1.3.0/WikidataR/inst/doc/Introduction.html | 2 - WikidataR-1.3.0/WikidataR/man/extract_claims.Rd |only WikidataR-1.3.0/WikidataR/man/get_item.Rd | 5 +- WikidataR-1.3.0/WikidataR/vignettes/Introduction.Rmd | 2 - 15 files changed, 94 insertions(+), 44 deletions(-)
Title: Find Free Versions of Scholarly Publications via the oaDOI
Service
Description: This web client interfaces oaDOI <https://oadoi.org>, a service finding
free full-texts of academic papers by linking DOIs with open access journals and
repositories. It provides unified access to various data sources for open access
full-text links including Crossref, Bielefeld Academic Search Engine (BASE) and
the Directory of Open Access Journals (DOAJ). API usage is free and no
registration is required.
Author: Najko Jahn [aut, cre]
Maintainer: Najko Jahn <najko.jahn@gmail.com>
Diff between roadoi versions 0.1 dated 2017-04-06 and 0.2 dated 2017-05-17
DESCRIPTION | 12 - MD5 | 36 ++--- NAMESPACE | 15 ++ NEWS | 15 ++ R/oadoiAddins.R |only R/oadoi_fetch.r | 97 ++++++++------ R/roadoi-package.r | 4 R/utils.r | 2 README.md | 262 ++++++++++++++++++++------------------ build/vignette.rds |binary inst/doc/intro.R | 14 +- inst/doc/intro.Rmd | 40 ++++- inst/doc/intro.html | 235 ++++++++++++++++++---------------- inst/img |only inst/rstudio |only man/oadoi_fetch.Rd | 74 ++++++---- man/oadoi_fetch_.Rd | 13 + man/roadoi-package.Rd | 4 man/roadoi_addin.Rd |only tests/testthat/test_oadoi_fetch.r | 19 ++ vignettes/intro.Rmd | 40 ++++- 21 files changed, 527 insertions(+), 355 deletions(-)
Title: Tools for Survey Statistics in Educational Assessment
Description: Contains tools for survey statistics (especially in educational
assessment) for datasets with replication designs (jackknife,
bootstrap, replicate weights). Descriptive statistics, linear
and logistic regression, path models for manifest variables
with measurement error correction and two-level hierarchical
regressions for weighted samples are included. Statistical
inference can be conducted for multiply imputed datasets and
nested multiply imputed datasets.
This package is developed by BIFIE (Federal Institute for
Educational Research, Innovation and Development of the Austrian
School System; Salzburg, Austria).
Author: BIFIE
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between BIFIEsurvey versions 2.0-7 dated 2017-04-27 and 2.1-6 dated 2017-05-17
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- R/BIFIE.data.jack.R | 17 ++++++++++++++--- inst/NEWS | 11 +++++++++++ 4 files changed, 34 insertions(+), 12 deletions(-)
Title: Infrastructure for Computing with Basis Functions
Description: Some very simple infrastructure for basis functions.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between basefun versions 0.0-37 dated 2017-04-05 and 0.0-38 dated 2017-05-17
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/box_bases.R | 4 +++- R/cbind_bases.R | 21 +++++++++++++++++++-- inst/NEWS.Rd | 10 ++++++++++ tests/bases-Ex.R | 32 +++++++++++++++++++++++++++++++- 6 files changed, 72 insertions(+), 13 deletions(-)
Title: Friendly R Startup Configuration
Description: Adds support for R startup configuration via '.Renviron.d' and '.Rprofile.d' directories in addition to '.Renviron' and '.Rprofile' files. This makes it possible to keep private / secret environment variables separate from other environment variables. It also makes it easier to share specific startup settings by simply copying a file to a directory.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between startup versions 0.6.0 dated 2017-05-01 and 0.6.1 dated 2017-05-17
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS | 10 ++++++++++ R/debug.R | 1 + R/find_files.R | 22 ++++++++++++++++++---- README.md | 17 +++++------------ 6 files changed, 42 insertions(+), 24 deletions(-)
Title: Person-Centered Analysis
Description: Provides an easy-to-use yet adaptable set of tools to conduct person-center analysis using a two-step clustering procedure. As described in Bergman and El-Khouri (1999) <DOI:10.1002/(SICI)1521-4036(199910)41:6%3C753::AID-BIMJ753%3E3.0.CO;2-K>, hierarchical clustering is performed to determine the initial partition for the subsequent k-means clustering procedure.
Author: person("Joshua", "M.", "Rosenberg", role = c("aut", "cre"), email = "jmichaelrosenberg@gmail.com")
Maintainer: Joshua Rosenberg <jmichaelrosenberg@gmail.com>
Diff between prcr versions 0.1.3 dated 2017-05-16 and 0.1.4 dated 2017-05-17
DESCRIPTION | 6 +-- MD5 | 15 ++++---- NAMESPACE | 1 R/functions.R | 69 +++++++++++++++++++++++++++++++++---- inst/doc/introduction_to_prcr.R | 7 +++ inst/doc/introduction_to_prcr.Rmd | 17 ++++++++- inst/doc/introduction_to_prcr.html | 39 +++++++++++++++++++- man/plot_r_squared.Rd |only vignettes/introduction_to_prcr.Rmd | 17 ++++++++- 9 files changed, 148 insertions(+), 23 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects at the mean or average marginal effects from
statistical models and returns the result as tidy data frames. These
data frames are ready to use with the 'ggplot2'-package.
Marginal effects can be calculated for many different models. Interaction
terms, splines and polynomial terms are also supported. The two main
functions are 'ggpredict()' and 'ggaverage()', however, there are
some convenient wrapper-functions especially for polynomials or
interactions. There is a generic 'plot()'-method to plot the results
using 'ggplot2'.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between ggeffects versions 0.1.0 dated 2017-04-26 and 0.1.1 dated 2017-05-17
DESCRIPTION | 13 MD5 | 56 ++- NAMESPACE | 8 NEWS.md | 24 + R/getter.R | 4 R/ggalleffects.R | 15 - R/ggaverage.R | 84 +---- R/ggeffect.R | 7 R/gginteraction.R | 9 R/ggpoly.R | 4 R/ggpredict.R | 12 R/plot.R | 598 +++++++++++++++++++++++------------------- R/predictions.R | 357 ++++++++++++------------- R/utils.R | 3 R/utils_expand_data_to_grid.R | 10 R/utils_link_inverse.R |only R/utils_model_family.R | 16 - R/utils_model_function.R | 2 README.md | 69 ++-- inst/doc/marginaleffects.R | 10 inst/doc/marginaleffects.Rmd | 14 inst/doc/marginaleffects.html | 123 ++++---- man/figures |only man/get_title.Rd | 4 man/ggalleffects.Rd | 1 man/ggeffect.Rd | 1 man/gginteraction.Rd | 1 man/ggpoly.Rd | 1 man/ggpredict.Rd | 1 vignettes/marginaleffects.Rmd | 14 30 files changed, 753 insertions(+), 708 deletions(-)
Title: Simple Data Frames
Description: Provides a 'tbl_df' class (the 'tibble') that provides
stricter checking and better formatting than the traditional data frame.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
Romain Francois [ctb],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between tibble versions 1.3.0 dated 2017-04-01 and 1.3.1 dated 2017-05-17
tibble-1.3.0/tibble/R/all-equal.r |only tibble-1.3.0/tibble/R/dataframe.R |only tibble-1.3.0/tibble/inst/doc/formatting.R |only tibble-1.3.0/tibble/inst/doc/formatting.Rmd |only tibble-1.3.0/tibble/inst/doc/formatting.html |only tibble-1.3.0/tibble/man/all_equal.Rd |only tibble-1.3.0/tibble/man/repair_names.Rd |only tibble-1.3.0/tibble/tests/testthat/test-equality.R |only tibble-1.3.0/tibble/vignettes/formatting.Rmd |only tibble-1.3.1/tibble/DESCRIPTION | 26 - tibble-1.3.1/tibble/MD5 | 141 +++--- tibble-1.3.1/tibble/NAMESPACE | 13 tibble-1.3.1/tibble/NEWS.md | 37 + tibble-1.3.1/tibble/R/add.R | 30 - tibble-1.3.1/tibble/R/as_tibble.R |only tibble-1.3.1/tibble/R/check-names.R | 37 - tibble-1.3.1/tibble/R/compat-lazyeval.R |only tibble-1.3.1/tibble/R/compat-purrr.R |only tibble-1.3.1/tibble/R/enframe.R | 2 tibble-1.3.1/tibble/R/glimpse.R | 30 - tibble-1.3.1/tibble/R/has-name.R | 19 tibble-1.3.1/tibble/R/lst.R |only tibble-1.3.1/tibble/R/repair-names.R | 98 ++++ tibble-1.3.1/tibble/R/rownames.R | 38 + tibble-1.3.1/tibble/R/tbl-df.r | 30 + tibble-1.3.1/tibble/R/tibble-pkg.R |only tibble-1.3.1/tibble/R/tibble.R | 213 +++++++--- tibble-1.3.1/tibble/R/tribble.R | 18 tibble-1.3.1/tibble/R/type-sum.r | 22 - tibble-1.3.1/tibble/R/utils-format.r | 198 +++++---- tibble-1.3.1/tibble/R/utils.r | 52 -- tibble-1.3.1/tibble/README.md | 109 +---- tibble-1.3.1/tibble/build/vignette.rds |binary tibble-1.3.1/tibble/inst/doc/extending.R |only tibble-1.3.1/tibble/inst/doc/extending.Rmd |only tibble-1.3.1/tibble/inst/doc/extending.html |only tibble-1.3.1/tibble/inst/doc/tibble.R | 17 tibble-1.3.1/tibble/inst/doc/tibble.Rmd | 20 tibble-1.3.1/tibble/inst/doc/tibble.html | 40 - tibble-1.3.1/tibble/man/as_tibble.Rd | 38 - tibble-1.3.1/tibble/man/figures |only tibble-1.3.1/tibble/man/formatting.Rd | 8 tibble-1.3.1/tibble/man/has_name.Rd | 10 tibble-1.3.1/tibble/man/is.tibble.Rd | 2 tibble-1.3.1/tibble/man/rownames.Rd | 6 tibble-1.3.1/tibble/man/tibble-package.Rd | 17 tibble-1.3.1/tibble/man/tibble.Rd | 44 -- tibble-1.3.1/tibble/man/tidy_names.Rd |only tibble-1.3.1/tibble/man/tribble.Rd | 2 tibble-1.3.1/tibble/tests/testthat/helper-encoding.R |only tibble-1.3.1/tibble/tests/testthat/helper-output.R | 4 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/POSIXlt-8-60.txt | 2 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/all--30.txt | 2 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/all--300.txt | 17 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/all-1-30-0.txt | 2 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/all-1-30-2.txt | 2 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/all-knit-120.txt | 2 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/all-knit-60.txt | 2 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/iris--70.txt | 20 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/iris-3-5.txt | 2 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/iris-5-30.txt | 2 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/iris_unk-10-70.txt | 18 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/long-5-30.txt | 2 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/mtcars-8-30.txt | 2 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/mtcars-knit-60.txt | 2 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/newline.txt |only tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/wide-8-60.txt | 2 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/zero_cols-5-30.txt | 2 tibble-1.3.1/tibble/tests/testthat/output/trunc_mat/zero_rows--30.txt | 2 tibble-1.3.1/tibble/tests/testthat/test-add.R | 56 ++ tibble-1.3.1/tibble/tests/testthat/test-data-frame.R | 141 +++++- tibble-1.3.1/tibble/tests/testthat/test-glimpse.R | 6 tibble-1.3.1/tibble/tests/testthat/test-obj-sum.R | 6 tibble-1.3.1/tibble/tests/testthat/test-options.R | 2 tibble-1.3.1/tibble/tests/testthat/test-repair_names.R | 13 tibble-1.3.1/tibble/tests/testthat/test-rownames.R | 60 ++ tibble-1.3.1/tibble/tests/testthat/test-tbl-df.R | 140 +++++- tibble-1.3.1/tibble/tests/testthat/test-tidy_names.R |only tibble-1.3.1/tibble/tests/testthat/test-tribble.R | 67 ++- tibble-1.3.1/tibble/tests/testthat/test-trunc-mat.R | 23 - tibble-1.3.1/tibble/tests/testthat/test-utils-format.R | 6 tibble-1.3.1/tibble/vignettes/extending.Rmd |only tibble-1.3.1/tibble/vignettes/tibble.Rmd | 20 83 files changed, 1214 insertions(+), 730 deletions(-)
Title: Dependencies for the 'jamovi' Framework
Description: 'jamovi' is a framework for creating rich interactive statistical
analyses (see <https://www.jamovi.org> for more information). This package
represents the core libraries which jamovi analyses written in R depend
upon.
Author: Jonathon Love
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmvcore versions 0.5.3 dated 2017-04-27 and 0.5.5 dated 2017-05-17
DESCRIPTION | 10 ++--- MD5 | 25 +++++++------- NAMESPACE | 10 +++++ R/analysis.R | 58 ++++++++++++++++++++++++-------- R/array.R | 53 ++++++++++++++++++++++++++++- R/group.R | 65 ++++++++++++++++++++++++++++++++++-- R/image.R | 66 +++++++++++++++++++++++++++++++++++-- R/options.R | 29 ++++++++++++++-- R/preformatted.R | 8 ++++ R/results.R | 21 +++++++++++ R/table.R | 13 ++++++- R/themes.R |only inst/jamovi.proto | 12 ++++++ man/themes.Rd |only tests/testthat/test-profiletable.R |only 15 files changed, 324 insertions(+), 46 deletions(-)
Title: Fast Truncated Singular Value Decomposition and Principal
Components Analysis for Large Dense and Sparse Matrices
Description: Fast and memory efficient methods for truncated singular value
decomposition and principal components analysis of large sparse and dense matrices.
Author: Jim Baglama [aut, cph],
Lothar Reichel [aut, cph],
B. W. Lewis [aut, cre, cph]
Maintainer: B. W. Lewis <blewis@illposed.net>
Diff between irlba versions 2.1.2 dated 2016-09-21 and 2.2.1 dated 2017-05-17
irlba-2.1.2/irlba/demo |only irlba-2.2.1/irlba/DESCRIPTION | 19 -- irlba-2.2.1/irlba/MD5 | 41 ++-- irlba-2.2.1/irlba/NAMESPACE | 3 irlba-2.2.1/irlba/R/eigen.R | 3 irlba-2.2.1/irlba/R/irlba.R | 301 +++++++++++++++++++++------------ irlba-2.2.1/irlba/R/prcomp.R | 4 irlba-2.2.1/irlba/R/svdr.R |only irlba-2.2.1/irlba/R/utility.R | 42 ++-- irlba-2.2.1/irlba/README.md | 112 ++++++++++-- irlba-2.2.1/irlba/build/vignette.rds |binary irlba-2.2.1/irlba/inst/doc/irlba.Rnw | 2 irlba-2.2.1/irlba/inst/doc/irlba.pdf |binary irlba-2.2.1/irlba/man/irlba.Rd | 93 ++++++---- irlba-2.2.1/irlba/man/partial_eigen.Rd | 3 irlba-2.2.1/irlba/man/svdr.Rd |only irlba-2.2.1/irlba/src/irlb.c | 67 ++++--- irlba-2.2.1/irlba/src/irlb.h | 16 + irlba-2.2.1/irlba/src/utility.c | 21 +- irlba-2.2.1/irlba/tests/edge.R | 135 ++++++++------ irlba-2.2.1/irlba/tests/svdr.R |only irlba-2.2.1/irlba/tests/test.R | 53 +++++ irlba-2.2.1/irlba/vignettes/irlba.Rnw | 2 23 files changed, 603 insertions(+), 314 deletions(-)
Title: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Description: Contains tools for exploring Hardy-Weinberg equilibrium for
diallelic genetic marker data. All classical tests (chi-square, exact,
likelihood-ratio and permutation tests) for Hardy-Weinberg equilibrium
are included in the package, as well as functions for power computation and
for the simulation of marker data under equilibrium and disequilibrium.
Routines for dealing with markers on the X-chromosome are included.
Functions for testing equilibrium in the presence of missing data by
using multiple imputation are also provided. Implements several graphics
for exploring the equilibrium status of a large set of diallelic markers:
ternary plots with acceptance regions, log-ratio plots and Q-Q plots.
Author: Jan Graffelman <jan.graffelman@upc.edu>
Maintainer: Jan Graffelman <jan.graffelman@upc.edu>
Diff between HardyWeinberg versions 1.5.7 dated 2017-04-22 and 1.5.8 dated 2017-05-17
HardyWeinberg-1.5.7/HardyWeinberg/vignettes/workd.bat |only HardyWeinberg-1.5.8/HardyWeinberg/DESCRIPTION | 8 - HardyWeinberg-1.5.8/HardyWeinberg/MD5 | 37 +++-- HardyWeinberg-1.5.8/HardyWeinberg/NAMESPACE | 3 HardyWeinberg-1.5.8/HardyWeinberg/R/H0.R |only HardyWeinberg-1.5.8/HardyWeinberg/R/H1.R |only HardyWeinberg-1.5.8/HardyWeinberg/R/H2.R |only HardyWeinberg-1.5.8/HardyWeinberg/R/H3.R |only HardyWeinberg-1.5.8/HardyWeinberg/R/HWChisq.R | 22 +-- HardyWeinberg-1.5.8/HardyWeinberg/R/HWExactStats.R | 26 +++- HardyWeinberg-1.5.8/HardyWeinberg/R/HWPosterior.R |only HardyWeinberg-1.5.8/HardyWeinberg/R/RcppExports.R | 4 HardyWeinberg-1.5.8/HardyWeinberg/R/ddir.R |only HardyWeinberg-1.5.8/HardyWeinberg/inst/doc/HardyWeinberg.R | 62 +++++----- HardyWeinberg-1.5.8/HardyWeinberg/inst/doc/HardyWeinberg.Rnw | 27 +++- HardyWeinberg-1.5.8/HardyWeinberg/inst/doc/HardyWeinberg.pdf |binary HardyWeinberg-1.5.8/HardyWeinberg/man/HWChisq.Rd | 3 HardyWeinberg-1.5.8/HardyWeinberg/man/HWExactStats.Rd | 16 +- HardyWeinberg-1.5.8/HardyWeinberg/man/HWPosterior.Rd |only HardyWeinberg-1.5.8/HardyWeinberg/man/HardyWeinberg-package.Rd | 4 HardyWeinberg-1.5.8/HardyWeinberg/src/RcppExports.cpp | 14 ++ HardyWeinberg-1.5.8/HardyWeinberg/src/support.cpp |only HardyWeinberg-1.5.8/HardyWeinberg/vignettes/HardyWeinberg.Rnw | 27 +++- HardyWeinberg-1.5.8/HardyWeinberg/vignettes/HardyWeinberg.bib | 4 24 files changed, 167 insertions(+), 90 deletions(-)
Title: Directional Statistics
Description: A collection of R functions for directional data analysis.
Author: Michail Tsagris, Giorgos Athineou, Anamul Sajib
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>
Diff between Directional versions 2.6 dated 2017-02-27 and 2.7 dated 2017-05-17
Directional-2.6/Directional/R/rvnomises.R |only Directional-2.7/Directional/DESCRIPTION | 8 Directional-2.7/Directional/MD5 | 162 ++++++++--------- Directional-2.7/Directional/NAMESPACE | 3 Directional-2.7/Directional/R/Arotation.R | 3 Directional-2.7/Directional/R/acg.R | 29 --- Directional-2.7/Directional/R/bic.mixvmf.R | 6 Directional-2.7/Directional/R/circ.cor1.R | 5 Directional-2.7/Directional/R/circ.cor2.R | 5 Directional-2.7/Directional/R/circ.summary.R | 101 ++++------ Directional-2.7/Directional/R/circlin.cor.R | 4 Directional-2.7/Directional/R/conc.test.R | 21 -- Directional-2.7/Directional/R/dirknn.R | 1 Directional-2.7/Directional/R/dirknn.tune.R | 3 Directional-2.7/Directional/R/embed.aov.R | 4 Directional-2.7/Directional/R/embed.circaov.R | 4 Directional-2.7/Directional/R/euclid.R | 7 Directional-2.7/Directional/R/euclid.inv.R | 3 Directional-2.7/Directional/R/eul2rot.R | 24 -- Directional-2.7/Directional/R/f.rbing.R | 14 - Directional-2.7/Directional/R/fb.saddle.R | 22 -- Directional-2.7/Directional/R/ggvm.R | 4 Directional-2.7/Directional/R/group.gof.R | 21 -- Directional-2.7/Directional/R/group.vm.R | 3 Directional-2.7/Directional/R/habeck.rot.R | 106 ++++------- Directional-2.7/Directional/R/hcf.aov.R | 6 Directional-2.7/Directional/R/hcf.circaov.R | 1 Directional-2.7/Directional/R/het.circaov.R | 1 Directional-2.7/Directional/R/iag.mle.R |only Directional-2.7/Directional/R/kent.contour.R | 5 Directional-2.7/Directional/R/kent.datacontour.R | 10 - Directional-2.7/Directional/R/kent.logcon.R | 5 Directional-2.7/Directional/R/kent.mle.R | 7 Directional-2.7/Directional/R/knn.reg.R | 2 Directional-2.7/Directional/R/knnreg.tune.R | 8 Directional-2.7/Directional/R/kuiper.R | 12 - Directional-2.7/Directional/R/lambert.R | 3 Directional-2.7/Directional/R/lambert.inv.R | 3 Directional-2.7/Directional/R/lr.aov.R | 19 - Directional-2.7/Directional/R/lr.circaov.R | 8 Directional-2.7/Directional/R/matrixfisher.mle.R | 5 Directional-2.7/Directional/R/meandir.test.R | 14 - Directional-2.7/Directional/R/mediandir.R | 2 Directional-2.7/Directional/R/mix.vmf.R | 16 - Directional-2.7/Directional/R/mixvmf.contour.R | 9 Directional-2.7/Directional/R/quat2rot.R | 36 +-- Directional-2.7/Directional/R/racg.R |only Directional-2.7/Directional/R/rayleigh.R | 4 Directional-2.7/Directional/R/rbingham.R | 16 - Directional-2.7/Directional/R/rfb.R | 2 Directional-2.7/Directional/R/rkent.R | 1 Directional-2.7/Directional/R/rmatrixfisher.R | 90 +++------ Directional-2.7/Directional/R/rmixvmf.R | 3 Directional-2.7/Directional/R/rot.matrix.R | 2 Directional-2.7/Directional/R/rot2eul.R | 14 - Directional-2.7/Directional/R/rot2quat.R | 8 Directional-2.7/Directional/R/rotation.R | 11 - Directional-2.7/Directional/R/rsop.R | 7 Directional-2.7/Directional/R/rvmf.R | 42 ---- Directional-2.7/Directional/R/rvonmises.R |only Directional-2.7/Directional/R/spher.cor.R | 4 Directional-2.7/Directional/R/spher.reg.R | 2 Directional-2.7/Directional/R/spherconc.test.R | 4 Directional-2.7/Directional/R/spml.reg.R | 24 +- Directional-2.7/Directional/R/tang.conc.R | 5 Directional-2.7/Directional/R/vm.kde.R | 7 Directional-2.7/Directional/R/vmf.R | 51 ++--- Directional-2.7/Directional/R/vmf.contour.R | 8 Directional-2.7/Directional/R/vmf.da.R | 5 Directional-2.7/Directional/R/vmf.kde.R | 14 - Directional-2.7/Directional/R/vmf.kerncontour.R | 8 Directional-2.7/Directional/R/vmfda.pred.R | 9 Directional-2.7/Directional/R/vmfkde.tune.R | 5 Directional-2.7/Directional/R/vmkde.tune.R | 6 Directional-2.7/Directional/R/watson.R | 14 - Directional-2.7/Directional/R/wood.mle.R | 9 Directional-2.7/Directional/man/Directional-package.Rd | 4 Directional-2.7/Directional/man/circ.summary.Rd | 18 + Directional-2.7/Directional/man/iag.mle.Rd |only Directional-2.7/Directional/man/kent.mle.Rd | 6 Directional-2.7/Directional/man/racg.Rd |only Directional-2.7/Directional/man/rvmf.Rd | 2 Directional-2.7/Directional/man/rvonmises.Rd | 2 Directional-2.7/Directional/man/spher.reg.Rd | 2 Directional-2.7/Directional/man/vmf.Rd | 9 85 files changed, 395 insertions(+), 758 deletions(-)
Title: Verbose Assertions for Tabular Data (Data.frames and
Data.tables)
Description: Simple, flexible, assertions on data.frame or data.table objects with verbose output for vetting. While other assertion packages apply towards more general use-cases, assertable is tailored towards tabular data. It includes functions to check variable names and values, whether the dataset contains all combinations of a given set of unique identifiers, and whether it is a certain length. In addition, assertable includes utility functions to check the existence of target files and to efficiently import multiple tabular data files into one data.table.
Author: Grant Nguyen [aut, cre]
Maintainer: Grant Nguyen <gngu@uw.edu>
Diff between assertable versions 0.2.2 dated 2017-03-03 and 0.2.3 dated 2017-05-17
DESCRIPTION | 11 ++++++----- MD5 | 16 ++++++++-------- R/assert_ids.R | 5 +++-- man/assert_colnames.Rd | 1 - man/assert_ids.Rd | 1 - man/assert_nrows.Rd | 1 - man/assert_values.Rd | 1 - man/check_files.Rd | 1 - man/import_files.Rd | 1 - 9 files changed, 17 insertions(+), 21 deletions(-)