Title: Optimal Stratification in Stratified Sampling
Description: An Optimization Algorithm Applied to
Stratification Problem.This function aims
at constructing optimal strata with an optimization algorithm
based on a global optimisation technique called Biased
Random Key Genetic Algorithms.
Author: Jose Brito, Pedro Silva and Tomas Veiga
Maintainer: Jose Brito <jambrito@gmail.com>
Diff between stratbr versions 1.0 dated 2017-05-11 and 1.1 dated 2017-05-19
DESCRIPTION | 21 +++--- MD5 | 11 +-- NAMESPACE | 1 R/hello.R | 54 +++++++++++------ R/stratbr.R | 181 ++++++++++++++++++++++++++++++++++----------------------- man/BSSM_FD.Rd |only man/stratbr.Rd | 30 ++++----- 7 files changed, 177 insertions(+), 121 deletions(-)
Title: Multiscale Change-Point Inference
Description: Allows fitting of step-functions to univariate serial data where neither the number of jumps nor their positions is known by implementing the multiscale regression estimators SMUCE and HSMUCE. In addition, confidence intervals for the change-point locations and bands for the unknown signal can be obtained.
Author: Pein Florian [aut],
Thomas Hotz [aut],
Hannes Sieling [aut],
Timo Aspelmeier [cre]
Maintainer: Timo Aspelmeier <timo.aspelmeier@mathematik.uni-goettingen.de>
Diff between stepR versions 1.0-7 dated 2017-04-20 and 2.0-1 dated 2017-05-19
stepR-1.0-7/stepR/R/stepfit.R |only stepR-1.0-7/stepR/man/stepfit.Rd |only stepR-2.0-1/stepR/ChangeLog | 99 ++++ stepR-2.0-1/stepR/DESCRIPTION | 29 - stepR-2.0-1/stepR/MD5 | 135 ++++-- stepR-2.0-1/stepR/NAMESPACE | 27 - stepR-2.0-1/stepR/R/RcppExports.R |only stepR-2.0-1/stepR/R/computeBounds.R |only stepR-2.0-1/stepR/R/computeStat.R |only stepR-2.0-1/stepR/R/critVal.R |only stepR-2.0-1/stepR/R/intervalSystem.R |only stepR-2.0-1/stepR/R/monteCarloSimulation.R |only stepR-2.0-1/stepR/R/parametricFamily.R |only stepR-2.0-1/stepR/R/sdrobnorm.R | 53 ++ stepR-2.0-1/stepR/R/stepFit.R |only stepR-2.0-1/stepR/R/stepbound.R | 222 +++++----- stepR-2.0-1/stepR/R/stepcand.R | 376 +++++++++--------- stepR-2.0-1/stepR/R/steppath.R | 326 +++++++-------- stepR-2.0-1/stepR/R/zzz.R |only stepR-2.0-1/stepR/build |only stepR-2.0-1/stepR/inst/CITATION | 8 stepR-2.0-1/stepR/inst/doc |only stepR-2.0-1/stepR/inst/tests |only stepR-2.0-1/stepR/man/MRC.Rd | 18 stepR-2.0-1/stepR/man/MRC1000.Rd | 2 stepR-2.0-1/stepR/man/MRCasymptotic.Rd | 2 stepR-2.0-1/stepR/man/MRCasymptoticDyadic.Rd | 2 stepR-2.0-1/stepR/man/bessel.Rd | 4 stepR-2.0-1/stepR/man/bounds.Rd | 17 stepR-2.0-1/stepR/man/compare.Rd | 4 stepR-2.0-1/stepR/man/computeBounds.Rd |only stepR-2.0-1/stepR/man/computeStat.Rd |only stepR-2.0-1/stepR/man/contMC.Rd | 5 stepR-2.0-1/stepR/man/critVal.Rd |only stepR-2.0-1/stepR/man/dfilter.Rd | 2 stepR-2.0-1/stepR/man/family.Rd | 4 stepR-2.0-1/stepR/man/intervalSystem.Rd |only stepR-2.0-1/stepR/man/jsmurf.Rd | 9 stepR-2.0-1/stepR/man/jumpint.Rd | 2 stepR-2.0-1/stepR/man/monteCarloSimulation.Rd |only stepR-2.0-1/stepR/man/parametricFamily.Rd |only stepR-2.0-1/stepR/man/penalty.Rd |only stepR-2.0-1/stepR/man/sdrobnorm.Rd | 25 - stepR-2.0-1/stepR/man/smuceR.Rd | 28 + stepR-2.0-1/stepR/man/stepFit.Rd |only stepR-2.0-1/stepR/man/stepR-package.Rd | 248 ++++++++--- stepR-2.0-1/stepR/man/stepbound.Rd | 11 stepR-2.0-1/stepR/man/stepfitClass.Rd |only stepR-2.0-1/stepR/man/steppath.Rd | 2 stepR-2.0-1/stepR/man/stepsel.Rd | 6 stepR-2.0-1/stepR/man/transit.Rd | 4 stepR-2.0-1/stepR/src/CallRoutines.cpp |only stepR-2.0-1/stepR/src/ColMax.cpp |only stepR-2.0-1/stepR/src/Compute.cpp |only stepR-2.0-1/stepR/src/Compute.h |only stepR-2.0-1/stepR/src/Convolve.cpp |only stepR-2.0-1/stepR/src/CriticalValuesWeights.cpp |only stepR-2.0-1/stepR/src/Data.cpp |only stepR-2.0-1/stepR/src/Data.h |only stepR-2.0-1/stepR/src/DataGauss.cpp |only stepR-2.0-1/stepR/src/DataGauss.h |only stepR-2.0-1/stepR/src/DataHsmuce.cpp |only stepR-2.0-1/stepR/src/DataHsmuce.h |only stepR-2.0-1/stepR/src/DataMDependentPS.cpp |only stepR-2.0-1/stepR/src/DataMDependentPS.h |only stepR-2.0-1/stepR/src/DynamicPrograms.cpp |only stepR-2.0-1/stepR/src/DynamicPrograms.h |only stepR-2.0-1/stepR/src/InOrdered.cpp |only stepR-2.0-1/stepR/src/IntervalSystem.cpp |only stepR-2.0-1/stepR/src/IntervalSystem.h |only stepR-2.0-1/stepR/src/IntervalSystemAll.cpp |only stepR-2.0-1/stepR/src/IntervalSystemAll.h |only stepR-2.0-1/stepR/src/IntervalSystemAllLengths.cpp |only stepR-2.0-1/stepR/src/IntervalSystemAllLengths.h |only stepR-2.0-1/stepR/src/IntervalSystemDyaLen.cpp |only stepR-2.0-1/stepR/src/IntervalSystemDyaLen.h |only stepR-2.0-1/stepR/src/IntervalSystemDyaLenLengths.cpp |only stepR-2.0-1/stepR/src/IntervalSystemDyaLenLengths.h |only stepR-2.0-1/stepR/src/IntervalSystemDyaPar.cpp |only stepR-2.0-1/stepR/src/IntervalSystemDyaPar.h |only stepR-2.0-1/stepR/src/IntervalSystemDyaParLengths.cpp |only stepR-2.0-1/stepR/src/IntervalSystemDyaParLengths.h |only stepR-2.0-1/stepR/src/LocalOptimum.cpp |only stepR-2.0-1/stepR/src/LocalOptimum.h |only stepR-2.0-1/stepR/src/RcppExports.cpp |only stepR-2.0-1/stepR/src/SingleBounds.cpp |only stepR-2.0-1/stepR/src/SingleBounds.h |only stepR-2.0-1/stepR/src/Step.cpp | 301 +++++++------- stepR-2.0-1/stepR/src/init.c | 10 stepR-2.0-1/stepR/tests/tests.R | 2 stepR-2.0-1/stepR/tests/testthat |only stepR-2.0-1/stepR/tests/testthat.R |only stepR-2.0-1/stepR/vignettes |only 93 files changed, 1195 insertions(+), 788 deletions(-)
Title: Simple Imputation
Description: Easy to use interfaces to a number of imputation methods
that fit in the not-a-pipe operator of the 'magrittr' package.
Author: Mark van der Loo [aut, cre]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between simputation versions 0.2.1 dated 2017-01-27 and 0.2.2 dated 2017-05-19
DESCRIPTION | 8 ++-- MD5 | 55 +++++++++++++++++++--------------- NAMESPACE | 7 +++- NEWS | 5 +++ R/foretell.R |only R/hotdeck.R | 1 R/linearmodels.R | 15 ++++----- R/modelimpute.R |only R/simputation-pkg.R | 2 - R/treemodels.R | 1 R/utils.R | 3 + build/vignette.rds |binary inst/doc/intro.R | 11 ++++++ inst/doc/intro.Rmd | 19 +++++++++++ inst/doc/intro.html | 53 ++++++++++++++++++++++++-------- man/foretell.Rd |only man/impute.Rd |only man/impute_hotdeck.Rd | 10 ++++-- man/impute_lm.Rd | 12 ++++--- man/impute_median.Rd | 2 - man/impute_multivariate.Rd | 4 +- man/impute_proxy.Rd | 4 +- man/impute_tree.Rd | 6 +++ man/na.roughfix.Rd | 1 man/print.simputation.capabilities.Rd | 1 man/reexports.Rd | 4 +- man/simputation.Rd | 1 src/R_register_native.c |only tests/testthat/test_foretell.R |only tests/testthat/test_imputemodels.R |only tests/testthat/test_lm.R | 11 +++++- vignettes/intro.Rmd | 19 +++++++++++ 32 files changed, 182 insertions(+), 73 deletions(-)
Title: Enhanced Quantitative Trading Modelling
Description: Download and organize historical market data from multiple sources like Yahoo (<https://finance.yahoo.com>), Google (<https://www.google.com/finance>), Finam (<https://www.finam.ru/profile/moex-akcii/sberbank/export/>), MOEX (<https://www.moex.com/en/derivatives/contracts.aspx>) and IQFeed (<https://www.iqfeed.net/symbolguide/index.cfm?symbolguide=lookup>). Code your trading algorithms in modern C++11 with powerful event driven tick processing API including trading costs and exchange communication latency and transform detailed data seamlessly into R. In just few lines of code you will be able to visualize every step of your trading model from tick data to multi dimensional heat maps.
Author: Stanislav Kovalevsky
Maintainer: Stanislav Kovalevsky <so.kovalevsky@gmail.com>
Diff between QuantTools versions 0.5.4 dated 2017-02-26 and 0.5.5 dated 2017-05-19
QuantTools-0.5.4/QuantTools/src/na_locf.cpp |only QuantTools-0.5.5/QuantTools/DESCRIPTION | 8 QuantTools-0.5.5/QuantTools/MD5 | 58 - QuantTools-0.5.5/QuantTools/NAMESPACE | 5 QuantTools-0.5.5/QuantTools/NEWS.md | 11 QuantTools-0.5.5/QuantTools/R/RcppExports.R | 9 QuantTools-0.5.5/QuantTools/R/bw.R | 162 +- QuantTools-0.5.5/QuantTools/R/doc.R | 2 QuantTools-0.5.5/QuantTools/R/doc_Processor.R | 6 QuantTools-0.5.5/QuantTools/R/dof.R | 57 - QuantTools-0.5.5/QuantTools/R/get_market_data.R | 126 +- QuantTools-0.5.5/QuantTools/R/lmerge.R | 2 QuantTools-0.5.5/QuantTools/R/na_locf.R |only QuantTools-0.5.5/QuantTools/R/plot_dts.R |only QuantTools-0.5.5/QuantTools/R/plot_ts.R | 10 QuantTools-0.5.5/QuantTools/README.md |only QuantTools-0.5.5/QuantTools/inst/examples/bbands.R |only QuantTools-0.5.5/QuantTools/inst/examples/bbands.cpp |only QuantTools-0.5.5/QuantTools/inst/examples/sma_crossover.R | 57 - QuantTools-0.5.5/QuantTools/inst/examples/sma_crossover.cpp | 11 QuantTools-0.5.5/QuantTools/inst/include/BackTest/Order.h | 544 +++++----- QuantTools-0.5.5/QuantTools/inst/include/BackTest/Processor.h | 19 QuantTools-0.5.5/QuantTools/inst/include/BackTest/Trade.h | 118 +- QuantTools-0.5.5/QuantTools/inst/include/NPeriods.h | 100 - QuantTools-0.5.5/QuantTools/man/bw.Rd | 10 QuantTools-0.5.5/QuantTools/man/cpp_Processor.Rd | 116 +- QuantTools-0.5.5/QuantTools/man/dof.Rd | 17 QuantTools-0.5.5/QuantTools/man/na_locf.Rd | 8 QuantTools-0.5.5/QuantTools/man/plot_dts.Rd |only QuantTools-0.5.5/QuantTools/man/plot_ts.Rd | 4 QuantTools-0.5.5/QuantTools/src/RcppExports.cpp | 8 QuantTools-0.5.5/QuantTools/src/init.c | 4 QuantTools-0.5.5/QuantTools/src/na_locf_numeric.cpp |only QuantTools-0.5.5/QuantTools/src/run_tests.cpp | 4 34 files changed, 839 insertions(+), 637 deletions(-)
Title: Model Implied Instrumental Variable (MIIV) Estimation of
Structural Equation Models
Description: Functions for estimating structural equation models using
instrumental variables.
Author: Zachary Fisher [aut, cre],
Keneth Bollen [aut],
Kathleen Gates [aut],
Mikko Rönkkö [aut]
Maintainer: Zachary Fisher <fish.zachary@gmail.com>
Diff between MIIVsem versions 0.4.8 dated 2016-10-27 and 0.5.2 dated 2017-05-19
MIIVsem-0.4.8/MIIVsem/R/miivboot.R |only MIIVsem-0.4.8/MIIVsem/R/miivvarcov.R |only MIIVsem-0.4.8/MIIVsem/R/optimMIIV.R |only MIIVsem-0.4.8/MIIVsem/man/MIIVsem.Rd |only MIIVsem-0.5.2/MIIVsem/DESCRIPTION | 32 MIIVsem-0.5.2/MIIVsem/MD5 | 120 + MIIVsem-0.5.2/MIIVsem/NAMESPACE | 10 MIIVsem-0.5.2/MIIVsem/R/MIIVsem-data.R | 210 +++ MIIVsem-0.5.2/MIIVsem/R/MIIVsem.R | 22 MIIVsem-0.5.2/MIIVsem/R/buildDeltaK.R |only MIIVsem-0.5.2/MIIVsem/R/buildMissingSyntax.R |only MIIVsem-0.5.2/MIIVsem/R/buildRestrictMat.R |only MIIVsem-0.5.2/MIIVsem/R/buildSSCP.R |only MIIVsem-0.5.2/MIIVsem/R/buildVarCovSyntax.R |only MIIVsem-0.5.2/MIIVsem/R/est2SLSCoef.R |only MIIVsem-0.5.2/MIIVsem/R/est2SLSCoefCov.R |only MIIVsem-0.5.2/MIIVsem/R/est2SLSSigmaSq.R |only MIIVsem-0.5.2/MIIVsem/R/estResidualCov.R |only MIIVsem-0.5.2/MIIVsem/R/estTwoStageML.R |only MIIVsem-0.5.2/MIIVsem/R/estVarCovarCoef.R |only MIIVsem-0.5.2/MIIVsem/R/estimatesTable.R |only MIIVsem-0.5.2/MIIVsem/R/fillParTable.R |only MIIVsem-0.5.2/MIIVsem/R/miive.2sls.R |only MIIVsem-0.5.2/MIIVsem/R/miive.R | 1271 +++++++++++---------- MIIVsem-0.5.2/MIIVsem/R/miivhelpers.R |only MIIVsem-0.5.2/MIIVsem/R/miivs.R | 1192 ++++++++----------- MIIVsem-0.5.2/MIIVsem/R/parseInstrumentSyntax.R |only MIIVsem-0.5.2/MIIVsem/R/pivDerivatives.R |only MIIVsem-0.5.2/MIIVsem/R/print.miive.R | 408 +++++- MIIVsem-0.5.2/MIIVsem/R/print.miivs.R | 49 MIIVsem-0.5.2/MIIVsem/R/processData.R |only MIIVsem-0.5.2/MIIVsem/R/restrict.tests.R |only MIIVsem-0.5.2/MIIVsem/R/summary.miive.R |only MIIVsem-0.5.2/MIIVsem/R/summary.miivs.R |only MIIVsem-0.5.2/MIIVsem/R/zzz.R |only MIIVsem-0.5.2/MIIVsem/README.md |only MIIVsem-0.5.2/MIIVsem/data/bollen1989b.rda |only MIIVsem-0.5.2/MIIVsem/data/bollen1989c.rda |only MIIVsem-0.5.2/MIIVsem/data/bollen1996.rda |only MIIVsem-0.5.2/MIIVsem/data/felson1979.rda |only MIIVsem-0.5.2/MIIVsem/man/MIIVsem-package.Rd |only MIIVsem-0.5.2/MIIVsem/man/bollen1989a.Rd | 30 MIIVsem-0.5.2/MIIVsem/man/bollen1989b.Rd |only MIIVsem-0.5.2/MIIVsem/man/bollen1989c.Rd |only MIIVsem-0.5.2/MIIVsem/man/bollen1996.Rd |only MIIVsem-0.5.2/MIIVsem/man/buildMissingSyntax.Rd |only MIIVsem-0.5.2/MIIVsem/man/buildRestrictMat.Rd |only MIIVsem-0.5.2/MIIVsem/man/buildSSCP.Rd |only MIIVsem-0.5.2/MIIVsem/man/buildVarCovSyntax.Rd |only MIIVsem-0.5.2/MIIVsem/man/est2SLSCoef.Rd |only MIIVsem-0.5.2/MIIVsem/man/est2SLSCoefCov.Rd |only MIIVsem-0.5.2/MIIVsem/man/est2SLSSigmaSq.Rd |only MIIVsem-0.5.2/MIIVsem/man/estResidualCov.Rd |only MIIVsem-0.5.2/MIIVsem/man/estTwoStageML.Rd |only MIIVsem-0.5.2/MIIVsem/man/estVarCovarCoef.Rd |only MIIVsem-0.5.2/MIIVsem/man/estimatesTable.Rd |only MIIVsem-0.5.2/MIIVsem/man/felson1979.Rd |only MIIVsem-0.5.2/MIIVsem/man/fillParTable.Rd |only MIIVsem-0.5.2/MIIVsem/man/miive.2sls.Rd |only MIIVsem-0.5.2/MIIVsem/man/miive.Rd | 580 +++++++-- MIIVsem-0.5.2/MIIVsem/man/miivs.Rd | 214 ++- MIIVsem-0.5.2/MIIVsem/man/parseInstrumentSyntax.Rd |only MIIVsem-0.5.2/MIIVsem/man/print.miive.Rd |only MIIVsem-0.5.2/MIIVsem/man/print.miivs.Rd |only MIIVsem-0.5.2/MIIVsem/man/processData.Rd |only MIIVsem-0.5.2/MIIVsem/man/summary.miive.Rd |only MIIVsem-0.5.2/MIIVsem/man/summary.miivs.Rd |only MIIVsem-0.5.2/MIIVsem/tests |only 68 files changed, 2570 insertions(+), 1568 deletions(-)
Title: Multivariate Kernel Density Estimation with Vine Copulas
Description: Implements the vine copula based kernel density estimator of
Nagler and Czado (2016) <doi:10.1016/j.jmva.2016.07.003>. The estimator does
not suffer from the curse of dimensionality and is therefore well suited for
high-dimensional applications.
Author: Thomas Nagler [aut, cre]
Maintainer: Thomas Nagler <thomas.nagler@tum.de>
Diff between kdevine versions 0.4.0 dated 2017-04-27 and 0.4.1 dated 2017-05-19
kdevine-0.4.0/kdevine/LICENSE |only kdevine-0.4.1/kdevine/DESCRIPTION | 12 ++++++------ kdevine-0.4.1/kdevine/MD5 | 11 +++++------ kdevine-0.4.1/kdevine/NAMESPACE | 2 +- kdevine-0.4.1/kdevine/NEWS.md | 13 +++++++++++++ kdevine-0.4.1/kdevine/R/kde1d.R | 15 +++++++++------ kdevine-0.4.1/kdevine/man/kde1d.Rd | 2 +- 7 files changed, 35 insertions(+), 20 deletions(-)
Title: Joint Modelling of Repeated Measurements and Time-to-Event Data
Description: Analysis of repeated measurements and time-to-event data via random
effects joint models. Fits the joint models proposed by Henderson and colleagues
<doi:10.1093/biostatistics/1.4.465> (single event time) and by Williamson and
colleagues (2008) <doi:10.1002/sim.3451> (competing risks events time) to a
single continuous repeated measure. The time-to-event data is modelled using a
(cause-specific) Cox proportional hazards regression model with time-varying
covariates. The longitudinal outcome is modelled using a linear mixed effects
model. The association is captured by a latent Gaussian process. The model is
estimated using am Expectation Maximization algorithm. Some plotting functions
and the variogram are also included. This project is funded by the Medical
Research Council (Grant numbers G0400615 and MR/M013227/1).
Author: Pete Philipson [aut],
Ines Sousa [aut],
Peter J. Diggle [aut],
Paula Williamson [aut],
Ruwanthi Kolamunnage-Dona [aut],
Robin Henderson [aut],
Graeme L. Hickey [aut, cre],
Maria Sudell [ctb]
Maintainer: Graeme L. Hickey <graeme.hickey@liverpool.ac.uk>
Diff between joineR versions 1.1.0 dated 2017-02-02 and 1.2.0 dated 2017-05-19
joineR-1.1.0/joineR/R/em.alg.R |only joineR-1.2.0/joineR/DESCRIPTION | 30 joineR-1.2.0/joineR/MD5 | 190 +-- joineR-1.2.0/joineR/NEWS.md | 35 joineR-1.2.0/joineR/R/UniqueVariables.R | 7 joineR-1.2.0/joineR/R/emUpdate.R |only joineR-1.2.0/joineR/R/emUpdateCR.R |only joineR-1.2.0/joineR/R/epileptic.R | 28 joineR-1.2.0/joineR/R/heart.valve.R | 11 joineR-1.2.0/joineR/R/joineR-package.R | 30 joineR-1.2.0/joineR/R/joint.R | 535 ++++++---- joineR-1.2.0/joineR/R/jointSE.R | 147 +- joineR-1.2.0/joineR/R/jointdata.R | 11 joineR-1.2.0/joineR/R/jointplot.R | 22 joineR-1.2.0/joineR/R/lines.jointdata.R | 12 joineR-1.2.0/joineR/R/liver.R | 21 joineR-1.2.0/joineR/R/longst.R | 16 joineR-1.2.0/joineR/R/mental.R | 17 joineR-1.2.0/joineR/R/plot.jointdata.R | 54 - joineR-1.2.0/joineR/R/plot.vargm.R | 10 joineR-1.2.0/joineR/R/points.jointdata.R | 12 joineR-1.2.0/joineR/R/prepLongData.R |only joineR-1.2.0/joineR/R/prepSurvData.R |only joineR-1.2.0/joineR/R/sample.jointdata.R | 33 joineR-1.2.0/joineR/R/simjoint.R | 148 +- joineR-1.2.0/joineR/R/subset.jointdata.R | 9 joineR-1.2.0/joineR/R/summary.joint.R | 98 + joineR-1.2.0/joineR/R/summary.jointdata.R | 42 joineR-1.2.0/joineR/R/summarybal.R | 7 joineR-1.2.0/joineR/R/survst.R | 65 + joineR-1.2.0/joineR/R/to.balanced.R | 5 joineR-1.2.0/joineR/R/to.unbalanced.R | 5 joineR-1.2.0/joineR/R/variogram.R | 7 joineR-1.2.0/joineR/README.md | 25 joineR-1.2.0/joineR/build/vignette.rds |binary joineR-1.2.0/joineR/data/epileptic.rda |binary joineR-1.2.0/joineR/inst/CITATION |only joineR-1.2.0/joineR/inst/doc/competing-risks.R |only joineR-1.2.0/joineR/inst/doc/competing-risks.Rmd |only joineR-1.2.0/joineR/inst/doc/competing-risks.html |only joineR-1.2.0/joineR/inst/doc/joineR.R | 2 joineR-1.2.0/joineR/inst/doc/joineR.Rmd | 41 joineR-1.2.0/joineR/inst/doc/joineR.html | 77 - joineR-1.2.0/joineR/man/UniqueVariables.Rd | 8 joineR-1.2.0/joineR/man/epileptic.Rd | 28 joineR-1.2.0/joineR/man/heart.valve.Rd | 11 joineR-1.2.0/joineR/man/joineR.Rd | 35 joineR-1.2.0/joineR/man/joint.Rd | 186 ++- joineR-1.2.0/joineR/man/jointSE.Rd | 30 joineR-1.2.0/joineR/man/jointdata.Rd | 8 joineR-1.2.0/joineR/man/jointplot.Rd | 22 joineR-1.2.0/joineR/man/lines.jointdata.Rd | 15 joineR-1.2.0/joineR/man/liver.Rd | 21 joineR-1.2.0/joineR/man/mental.Rd | 17 joineR-1.2.0/joineR/man/plot.jointdata.Rd | 15 joineR-1.2.0/joineR/man/plot.vargm.Rd | 7 joineR-1.2.0/joineR/man/points.jointdata.Rd | 9 joineR-1.2.0/joineR/man/sample.jointdata.Rd | 26 joineR-1.2.0/joineR/man/simjoint.Rd | 125 +- joineR-1.2.0/joineR/man/subset.jointdata.Rd | 6 joineR-1.2.0/joineR/man/summary.joint.Rd | 39 joineR-1.2.0/joineR/man/summary.jointdata.Rd | 12 joineR-1.2.0/joineR/man/summarybal.Rd | 14 joineR-1.2.0/joineR/man/to.balanced.Rd | 12 joineR-1.2.0/joineR/man/to.unbalanced.Rd | 12 joineR-1.2.0/joineR/man/variogram.Rd | 8 joineR-1.2.0/joineR/tests/testthat/test-ancillary.R | 15 joineR-1.2.0/joineR/tests/testthat/test-comprisk.R |only joineR-1.2.0/joineR/tests/testthat/test-misc.R | 2 joineR-1.2.0/joineR/tests/testthat/test-models.R | 30 joineR-1.2.0/joineR/tests/testthat/test-plot.R | 8 joineR-1.2.0/joineR/vignettes/competing-risks.Rmd |only joineR-1.2.0/joineR/vignettes/competing-risks_cache |only joineR-1.2.0/joineR/vignettes/joineR.Rmd | 41 joineR-1.2.0/joineR/vignettes/joineR_cache/html/__packages | 1 joineR-1.2.0/joineR/vignettes/joineR_cache/html/heart.valve_jd_257aebb51a26b625ea384c22d20e8121.RData |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/heart.valve_jd_257aebb51a26b625ea384c22d20e8121.rdb |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/heart.valve_jd_257aebb51a26b625ea384c22d20e8121.rdx |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/heart.valve_jm_d35831f0e4179343f3b150e346e736b3.RData |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/heart.valve_jm_d35831f0e4179343f3b150e346e736b3.rdb |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/heart.valve_jm_d35831f0e4179343f3b150e346e736b3.rdx |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/heart.valve_jointdata_9b72da1c5658b7e9dcab4afba3b0197e.RData |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/heart.valve_jointdata_9b72da1c5658b7e9dcab4afba3b0197e.rdb |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/heart.valve_jointdata_9b72da1c5658b7e9dcab4afba3b0197e.rdx |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/liver_jm_ab3deed578c671625bfee5424f8a444c.RData |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/liver_jm_ab3deed578c671625bfee5424f8a444c.rdb |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/liver_jm_ab3deed578c671625bfee5424f8a444c.rdx |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/mental_jm1_c981c689bdc1adadf7952eb80f855f66.RData |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/mental_jm1_c981c689bdc1adadf7952eb80f855f66.rdb |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/mental_jm1_c981c689bdc1adadf7952eb80f855f66.rdx |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/mental_jm2_85c4b2b4eaffae6daa2366a322e1f03b.RData |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/mental_jm2_85c4b2b4eaffae6daa2366a322e1f03b.rdb |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/mental_jm2_85c4b2b4eaffae6daa2366a322e1f03b.rdx |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/mental_jm_boot_8a0878e546549bb07b4c9d0973a7805d.RData |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/mental_jm_boot_8a0878e546549bb07b4c9d0973a7805d.rdb |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/mental_jm_boot_8a0878e546549bb07b4c9d0973a7805d.rdx |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/mental_variogram_008f0998c43747a001c284c23dff990f.RData |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/mental_variogram_008f0998c43747a001c284c23dff990f.rdb |binary joineR-1.2.0/joineR/vignettes/joineR_cache/html/mental_variogram_008f0998c43747a001c284c23dff990f.rdx |binary 99 files changed, 1496 insertions(+), 1019 deletions(-)
Title: Spatial Interpolation by Inverse Path Distance Weighting
Description: Functions are provided to interpolate geo-referenced point data via
Inverse Path Distance Weighting. Useful for coastal marine applications where
barriers in the landscape preclude interpolation with Euclidean distances.
Author: Joseph Stachelek <stachel2@msu.edu>
Maintainer: Joseph Stachelek <stachel2@msu.edu>
Diff between ipdw versions 0.2-5 dated 2016-07-26 and 0.2-6 dated 2017-05-19
ipdw-0.2-5/ipdw/inst/doc/ipdw.R |only ipdw-0.2-5/ipdw/inst/doc/ipdw.Rnw |only ipdw-0.2-5/ipdw/inst/doc/ipdw.pdf |only ipdw-0.2-5/ipdw/vignettes/framed.sty |only ipdw-0.2-5/ipdw/vignettes/ipdw.Rnw |only ipdw-0.2-5/ipdw/vignettes/ipdw.run.xml |only ipdw-0.2-5/ipdw/vignettes/jsslogo.jpg |only ipdw-0.2-6/ipdw/DESCRIPTION | 17 +- ipdw-0.2-6/ipdw/MD5 | 52 +++---- ipdw-0.2-6/ipdw/NAMESPACE | 18 ++ ipdw-0.2-6/ipdw/NEWS.md |only ipdw-0.2-6/ipdw/R/costrasterGen.R | 6 ipdw-0.2-6/ipdw/R/ipdw.R | 5 ipdw-0.2-6/ipdw/R/ipdwInterp.R | 9 - ipdw-0.2-6/ipdw/R/pathdistGen.R | 6 ipdw-0.2-6/ipdw/R/pathdistGen_parallel.R | 2 ipdw-0.2-6/ipdw/README.md | 24 ++- ipdw-0.2-6/ipdw/build/vignette.rds |binary ipdw-0.2-6/ipdw/inst/CITATION | 2 ipdw-0.2-6/ipdw/inst/doc/ipdw2.R |only ipdw-0.2-6/ipdw/inst/doc/ipdw2.Rmd |only ipdw-0.2-6/ipdw/inst/doc/ipdw2.html |only ipdw-0.2-6/ipdw/man/costrasterGen.Rd | 7 - ipdw-0.2-6/ipdw/man/errorGen.Rd | 1 ipdw-0.2-6/ipdw/man/ipdw.Rd | 1 ipdw-0.2-6/ipdw/man/ipdwInterp.Rd | 3 ipdw-0.2-6/ipdw/man/pathdistGen.Rd | 1 ipdw-0.2-6/ipdw/man/rm_na_pointslayers.Rd | 5 ipdw-0.2-6/ipdw/tests/testthat/Rplots.pdf |binary ipdw-0.2-6/ipdw/tests/testthat/test-errorGen.R | 6 ipdw-0.2-6/ipdw/tests/testthat/test-ipdwInterp.R | 13 + ipdw-0.2-6/ipdw/vignettes/ipdw2.Rmd |only ipdw-0.2-6/ipdw/vignettes/ipdw2.bib | 156 +++++++++++------------ 33 files changed, 171 insertions(+), 163 deletions(-)
Title: Bundle Methods for Regularized Risk Minimization Package
Description: Bundle methods for minimization of convex and non-convex risk
under L1 or L2 regularization. Implements the algorithm proposed by Teo et
al. (JMLR 2010) as well as the extension proposed by Do and Artieres (JMLR
2012). The package comes with lot of loss functions for machine learning
which make it powerful for big data analysis. The applications includes:
structured prediction, linear SVM, multi-class SVM, f-beta optimization,
ROC optimization, ordinal regression, quantile regression,
epsilon insensitive regression, least mean square, logistic regression,
least absolute deviation regression (see package examples), etc... all with
L1 and L2 regularization.
Author: Julien Prados
Maintainer: Julien Prados <julien.prados@unige.ch>
Diff between bmrm versions 3.0 dated 2015-01-15 and 3.3 dated 2017-05-19
bmrm-3.0/bmrm/R/cost.R |only bmrm-3.0/bmrm/R/scalarClassificationLosses.R |only bmrm-3.0/bmrm/R/scalarRegressionLosses.R |only bmrm-3.0/bmrm/R/vectorialLoss.R |only bmrm-3.0/bmrm/inst/doc/bmrm.Rnw |only bmrm-3.0/bmrm/inst/doc/bmrm.pdf |only bmrm-3.0/bmrm/man/epsilonInsensitiveRegressionLoss.Rd |only bmrm-3.0/bmrm/man/fbetaLoss.Rd |only bmrm-3.0/bmrm/man/hingeLoss.Rd |only bmrm-3.0/bmrm/man/ladRegressionLoss.Rd |only bmrm-3.0/bmrm/man/lmsRegressionLoss.Rd |only bmrm-3.0/bmrm/man/logisticRegressionLoss.Rd |only bmrm-3.0/bmrm/man/quantileRegressionLoss.Rd |only bmrm-3.0/bmrm/man/rocLoss.Rd |only bmrm-3.0/bmrm/vignettes/bmrm.Rnw |only bmrm-3.3/bmrm/DESCRIPTION | 23 bmrm-3.3/bmrm/MD5 | 59 - bmrm-3.3/bmrm/NAMESPACE | 12 bmrm-3.3/bmrm/NEWS | 6 bmrm-3.3/bmrm/R/bmrm.R | 36 - bmrm-3.3/bmrm/R/core_loss.R |only bmrm-3.3/bmrm/R/loss.R | 546 +++++++++++++++++- bmrm-3.3/bmrm/R/misc_ML.R |only bmrm-3.3/bmrm/R/nrbm.R | 84 +- bmrm-3.3/bmrm/R/svmLP.R |only bmrm-3.3/bmrm/R/wolfe.R |only bmrm-3.3/bmrm/build/vignette.rds |binary bmrm-3.3/bmrm/inst/doc/bmrm.R | 61 -- bmrm-3.3/bmrm/inst/doc/bmrm.Rmd |only bmrm-3.3/bmrm/inst/doc/bmrm.html |only bmrm-3.3/bmrm/man/balanced.cv.fold.Rd |only bmrm-3.3/bmrm/man/binaryClassificationLosses.Rd |only bmrm-3.3/bmrm/man/bmrm.Rd | 55 - bmrm-3.3/bmrm/man/costMatrix.Rd | 7 bmrm-3.3/bmrm/man/gradient.Rd | 6 bmrm-3.3/bmrm/man/lpSVM.Rd |only bmrm-3.3/bmrm/man/nrbm.Rd | 26 bmrm-3.3/bmrm/man/ontologyLoss.Rd |only bmrm-3.3/bmrm/man/ordinalRegressionLoss.Rd | 13 bmrm-3.3/bmrm/man/regressionLosses.Rd |only bmrm-3.3/bmrm/man/roc.stat.Rd |only bmrm-3.3/bmrm/man/softMarginVectorLoss.Rd | 58 - bmrm-3.3/bmrm/man/wolfe.linesearch.Rd |only bmrm-3.3/bmrm/vignettes/bmrm.Rmd |only bmrm-3.3/bmrm/vignettes/bmrm.bib | 14 45 files changed, 752 insertions(+), 254 deletions(-)
Title: Project Management Tools
Description: Tools for data importation, recoding, and inspection that
are used at the University of Kansas Center for Research Methods
and Data Analysis. There are functions to create new project
folders, R code templates, create uniquely named output
directories, and to quickly obtain a visual summary for each
variable in a data frame. The main feature here is the systematic
implementation of the "variable key" framework for data
importation and recoding. We are eager to have community feedback
about the variable key and the vignette about it.
Author: Paul Johnson [aut, cre],
Benjamin Kite [aut],
Kenna Whitley [ctb],
Po-Yi Chen [ctb]
Maintainer: Paul Johnson <pauljohn@ku.edu>
Diff between kutils versions 0.93 dated 2017-01-26 and 1.0 dated 2017-05-19
kutils-0.93/kutils/R/cfaTable.R |only kutils-0.93/kutils/man/cfaTable.Rd |only kutils-1.0/kutils/DESCRIPTION | 10 kutils-1.0/kutils/MD5 | 120 ++++---- kutils-1.0/kutils/NAMESPACE | 2 kutils-1.0/kutils/R/modelcomparison.R | 14 - kutils-1.0/kutils/R/semTable.R |only kutils-1.0/kutils/R/textUtils.R | 4 kutils-1.0/kutils/R/utils.R | 26 - kutils-1.0/kutils/R/variableKey.R | 351 ++++++++++++++++---------- kutils-1.0/kutils/build/vignette.rds |binary kutils-1.0/kutils/data/natlongsurv.RData |binary kutils-1.0/kutils/inst/ChangeLog | 24 + kutils-1.0/kutils/inst/doc/variablekey.Rnw | 2 kutils-1.0/kutils/inst/doc/variablekey.pdf |binary kutils-1.0/kutils/inst/extdata/mydf.key.csv | 16 - kutils-1.0/kutils/man/alphaOnly.Rd | 3 kutils-1.0/kutils/man/assignMissing.Rd | 108 ++++---- kutils-1.0/kutils/man/assignRecode.Rd | 1 kutils-1.0/kutils/man/checkValues.Rd | 5 kutils-1.0/kutils/man/cleanDataFrame.Rd | 1 kutils-1.0/kutils/man/colnamesReplace.Rd | 1 kutils-1.0/kutils/man/compareCFA.Rd | 1 kutils-1.0/kutils/man/deleteBogusColumns.Rd | 7 kutils-1.0/kutils/man/deleteBogusRows.Rd | 1 kutils-1.0/kutils/man/detectNested.Rd | 3 kutils-1.0/kutils/man/dev.create.Rd | 1 kutils-1.0/kutils/man/dir.create.unique.Rd | 1 kutils-1.0/kutils/man/dms.Rd | 1 kutils-1.0/kutils/man/dts.Rd | 1 kutils-1.0/kutils/man/escape.Rd | 3 kutils-1.0/kutils/man/initProject.Rd | 1 kutils-1.0/kutils/man/is.data.frame.simple.Rd | 1 kutils-1.0/kutils/man/keyApply.Rd | 4 kutils-1.0/kutils/man/keyChecker.Rd |only kutils-1.0/kutils/man/keyDiagnostic.Rd | 1 kutils-1.0/kutils/man/keyDiff.Rd | 1 kutils-1.0/kutils/man/keyImport.Rd | 1 kutils-1.0/kutils/man/keyTemplate.Rd | 3 kutils-1.0/kutils/man/keyUpdate.Rd | 1 kutils-1.0/kutils/man/likert.Rd | 1 kutils-1.0/kutils/man/long2wide.Rd | 7 kutils-1.0/kutils/man/makeKeylist.Rd | 5 kutils-1.0/kutils/man/mgsub.Rd | 1 kutils-1.0/kutils/man/n2NA.Rd | 1 kutils-1.0/kutils/man/natlongsurv.Rd | 7 kutils-1.0/kutils/man/padW0.Rd | 3 kutils-1.0/kutils/man/peek.Rd | 4 kutils-1.0/kutils/man/print.keyDiagnostic.Rd | 1 kutils-1.0/kutils/man/removeMatches.Rd | 1 kutils-1.0/kutils/man/reverse.Rd | 1 kutils-1.0/kutils/man/safeInteger.Rd | 25 + kutils-1.0/kutils/man/semTable.Rd |only kutils-1.0/kutils/man/shorten.Rd | 3 kutils-1.0/kutils/man/smartRead.Rd | 1 kutils-1.0/kutils/man/smartSave.Rd | 3 kutils-1.0/kutils/man/starsig.Rd | 1 kutils-1.0/kutils/man/stringbreak.Rd | 3 kutils-1.0/kutils/man/truncsmart.Rd | 1 kutils-1.0/kutils/man/updatePackages.Rd | 1 kutils-1.0/kutils/man/wide2long.Rd | 3 kutils-1.0/kutils/man/zapspace.Rd | 1 kutils-1.0/kutils/vignettes/relsize.sty |only kutils-1.0/kutils/vignettes/variablekey.Rnw | 2 64 files changed, 456 insertions(+), 340 deletions(-)
Title: DTR Estimation and Inference via G-Estimation, Dynamic WOLS, and
Q-Learning
Description: Dynamic treatment regime estimation and inference via G-estimation,
dynamic weighted ordinary least squares (dWOLS) and Q-learning. Inference
via bootstrap and (for G-estimation) recursive sandwich estimation.
Author: Michael Wallace, Erica E M Moodie, David A Stephens and Gabrielle Simoneau
Maintainer: Michael Wallace <michael.wallace@uwaterloo.ca>
Diff between DTRreg versions 1.1 dated 2016-11-03 and 1.2 dated 2017-05-19
DESCRIPTION | 14 ++---- MD5 | 9 ++-- NAMESPACE | 1 R/DTRreg.R | 103 +++++++++++++++++++++++++++++++++++++++++++++++++- man/DTRreg.Rd | 4 - man/chooseM.DTRreg.Rd |only 6 files changed, 115 insertions(+), 16 deletions(-)
Title: Retrieval Functions for USGS and EPA Hydrologic and Water
Quality Data
Description: Collection of functions to help retrieve U.S. Geological Survey
(USGS) and U.S. Environmental Protection Agency (EPA) water quality and
hydrology data from web services. USGS web services are discovered from
National Water Information System (NWIS) <https://waterservices.usgs.gov/> and <https://waterdata.usgs.gov/nwis>.
Both EPA and USGS water quality data are obtained from the Water Quality Portal <https://www.waterqualitydata.us/>.
Author: Robert Hirsch [aut],
Laura DeCicco [aut, cre],
David Lorenz [aut],
Jordan Read [ctb],
Jordan Walker [ctb],
Lindsay Carr [ctb],
David Watkins [aut]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between dataRetrieval versions 2.7.0 dated 2017-05-15 and 2.7.1 dated 2017-05-19
dataRetrieval-2.7.0/dataRetrieval/README.md |only dataRetrieval-2.7.0/dataRetrieval/inst/doc/dataRetrieval.Rnw |only dataRetrieval-2.7.0/dataRetrieval/inst/doc/dataRetrieval.pdf |only dataRetrieval-2.7.0/dataRetrieval/vignettes/dataRetrieval.Rnw |only dataRetrieval-2.7.1/dataRetrieval/DESCRIPTION | 10 dataRetrieval-2.7.1/dataRetrieval/MD5 | 21 dataRetrieval-2.7.1/dataRetrieval/NEWS | 4 dataRetrieval-2.7.1/dataRetrieval/R/whatNWISData.r | 8 dataRetrieval-2.7.1/dataRetrieval/build/vignette.rds |binary dataRetrieval-2.7.1/dataRetrieval/inst/doc/dataRetrieval.R | 251 +++++++--- dataRetrieval-2.7.1/dataRetrieval/inst/doc/dataRetrieval.Rmd |only dataRetrieval-2.7.1/dataRetrieval/inst/doc/dataRetrieval.html |only dataRetrieval-2.7.1/dataRetrieval/tests/testthat/tests_general.R | 3 dataRetrieval-2.7.1/dataRetrieval/tests/testthat/tests_userFriendly_fxns.R | 24 dataRetrieval-2.7.1/dataRetrieval/vignettes/dataRetrieval.Rmd |only 15 files changed, 227 insertions(+), 94 deletions(-)
Title: Robust Covariance Estimation via Nearest Neighbor Cleaning
Description: The cov.nnve() function implements robust covariance estimation
by the nearest neighbor variance estimation (NNVE) method of
Wang and Raftery (2002) <DOI:10.1198/016214502388618780>.
Author: Naisyin Wang <nwangaa@umich.edu> and Adrian Raftery
<raftery@uw.edu> with contributions from Chris Fraley <fraley@uw.edu>
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between covRobust versions 1.1-1 dated 2017-05-12 and 1.1-3 dated 2017-05-19
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/cov.nnve.R | 27 ++++++++++++++++----------- 3 files changed, 23 insertions(+), 18 deletions(-)
Title: Fishery Science Methods and Models in R
Description: Fishery science methods and models from published literature and contributions from colleagues.
Author: Gary A. Nelson <gary.nelson@state.ma.us>
Maintainer: Gary A. Nelson <gary.nelson@state.ma.us>
Diff between fishmethods versions 1.10-1 dated 2017-03-07 and 1.10-2 dated 2017-05-19
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++++------ R/growth.R | 3 ++- R/mature.R |only R/vblrt.R | 15 ++++++++------- R/vbmultifit.R | 7 ++++--- data/maki.rda |only man/maki.Rd |only man/mature.Rd |only man/vblrt.Rd | 2 +- man/vbmultifit.Rd | 2 +- 11 files changed, 30 insertions(+), 23 deletions(-)
Title: Group Iterative Multiple Model Estimation
Description: Automated identification and estimation of group- and
individual-level relations in time series data from within a structural
equation modeling framework.
Author: Stephanie Lane [aut, cre, trl],
Kathleen Gates [aut],
Peter Molenaar [aut],
Michael Hallquist [ctb],
Hallie Pike [ctb]
Maintainer: Stephanie Lane <slane@unc.edu>
Diff between gimme versions 0.2-1 dated 2017-03-23 and 0.2-2 dated 2017-05-19
DESCRIPTION | 10 +-- MD5 | 16 ++++-- R/aggSEM.R | 20 +++---- R/gimme.R | 148 ++++++++++++++++++++++++++++------------------------------ R/indSEM.R | 3 - inst |only man/aggSEM.Rd | 9 ++- tests |only 8 files changed, 106 insertions(+), 100 deletions(-)
Title: Accessing Environmental Data from ERD's ERDDAP Server
Description: Contains three functions that access
environmental data from ERD's ERDDAP service <http://coastwatch.pfeg.noaa.gov/erddap>. The xtracto() function extracts
data along a trajectory for a given "radius" around the point. The
xtracto_3D() function extracts data in a box. The xtractogon() function
extracts data in a polygon. There are also two helper functions to obtain
information about available data.
Author: Roy Mendelssohn [aut, cre],
Cindy Bessey [ctb],
Dave Foley [ctb]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between xtractomatic versions 3.3.1 dated 2017-05-17 and 3.3.2 dated 2017-05-19
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/sysdata.rda |binary R/xtracto_3D.R | 2 +- README.md | 11 ++++++----- inst/doc/Usingxtractomatic.html | 16 ++++++++-------- man/xtracto_3D.Rd | 2 +- 8 files changed, 31 insertions(+), 25 deletions(-)
Title: Coarse Approximation Linear Function
Description: Contains greedy algorithms for coarse approximation linear
functions.
Author: Stephanie Lane [aut, cre], Clark Jeffries [aut], Diana Perkins [aut]
Maintainer: Stephanie Lane <slane@unc.edu>
Diff between CALF versions 0.1.3 dated 2016-07-25 and 0.2.0 dated 2017-05-19
DESCRIPTION | 14 - MD5 | 20 +- R/CALF-data.R | 1 R/calf_internal.R | 393 ++++++++++++++++++++++++++++++++------------------ R/calf_wrappers.R | 48 ++++-- R/print.calf.R | 17 +- man/CALF-package.Rd | 1 man/CaseControl.Rd | 1 man/calf.Rd | 8 - man/calf_randomize.Rd | 7 man/calf_subset.Rd | 7 11 files changed, 341 insertions(+), 176 deletions(-)
Title: XSLT 1.0 Transformations
Description: An extension for the 'xml2' package to transform XML documents
by applying an XSL stylesheet.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between xslt versions 1.0 dated 2017-01-07 and 1.1 dated 2017-05-19
xslt-1.0/xslt/man/xml_xslt.Rd |only xslt-1.1/xslt/DESCRIPTION | 10 +++++----- xslt-1.1/xslt/MD5 | 21 ++++++++++++--------- xslt-1.1/xslt/NAMESPACE | 1 + xslt-1.1/xslt/NEWS |only xslt-1.1/xslt/R/xml_xslt.R | 29 +++++++++++++++++++++-------- xslt-1.1/xslt/inst/examples/example.xml |only xslt-1.1/xslt/inst/examples/list.xsl |only xslt-1.1/xslt/man/xslt.Rd |only xslt-1.1/xslt/src/Makevars.win | 2 +- xslt-1.1/xslt/src/RcppExports.cpp | 2 +- xslt-1.1/xslt/src/xslt.cpp | 19 +++++++++++++++---- xslt-1.1/xslt/src/xslt_init.cpp | 4 ++++ xslt-1.1/xslt/tests/testthat/test-xslt.R | 18 ++++++++++++++++-- 14 files changed, 76 insertions(+), 30 deletions(-)
Title: Import OpenStreetMap Data as Simple Features or Spatial Objects
Description: Download and import of "OpenStreetMap" ('OSM') data as 'sf' or 'sp'
objects. 'OSM' data are extracted from the 'Overpass' web server and
processed with very fast 'C++' routines for return to 'R'.
Author: Mark Padgham [aut, cre],
Bob Rudis [aut],
Robin Lovelace [aut],
Maëlle Salmon [aut],
Andrew Smith [ctb],
Marcin Kalicinski [ctb, cph] (Author of included RapidXML code),
Finkelstein Noam [ctb, cph] (Author of included stub.R code),
Bartnik Lukasz [ctb, cph] (Author of included stub.R code)
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between osmdata versions 0.0.0 dated 2017-05-18 and 0.0.1 dated 2017-05-19
osmdata-0.0.0/osmdata/configure |only osmdata-0.0.0/osmdata/src/Makevars.in |only osmdata-0.0.1/osmdata/DESCRIPTION | 6 - osmdata-0.0.1/osmdata/MD5 | 16 ++-- osmdata-0.0.1/osmdata/R/features.R | 54 ++++++++-------- osmdata-0.0.1/osmdata/inst/doc/osm-sf-translation.html | 4 - osmdata-0.0.1/osmdata/inst/doc/osmdata.html | 4 - osmdata-0.0.1/osmdata/tests/testthat/test-features.R | 57 ++++++++--------- osmdata-0.0.1/osmdata/tests/testthat/test-osmdata.R | 8 +- osmdata-0.0.1/osmdata/tests/testthat/test-sf-osm.R | 53 ++++++++++++++- 10 files changed, 126 insertions(+), 76 deletions(-)
Title: Searching for Optimal MDS Procedure for Metric Data
Description: Searching for Optimal MDS procedure for metric data.
Author: Marek Walesiak <marek.walesiak@ue.wroc.pl> Andrzej Dudek <andrzej.dudek@ue.wroc.pl>
Maintainer: Andrzej Dudek <andrzej.dudek@ue.wroc.pl>
Diff between mdsOpt versions 0.1-2 dated 2017-03-07 and 0.1-3 dated 2017-05-19
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/optSmacofSym.r | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Box-Cox Power Transformation
Description: Box-Cox power transformation parameter is estimated for different purposes.
Author: Osman Dag [aut, cre], Ozgur Asar [aut], Ozlem Ilk [aut]
Maintainer: Osman Dag <osman.dag@hacettepe.edu.tr>
Diff between AID versions 1.8 dated 2017-05-09 and 1.9 dated 2017-05-19
DESCRIPTION | 14 +++++++------- MD5 | 24 ++++++++++++++---------- NAMESPACE | 8 ++++++-- R/boxcoxfr.R | 4 ++++ R/boxcoxnc.R | 27 +++++++++++++++++++-------- R/confInt.R |only R/confInt.boxcoxfr.R |only man/AADT.Rd | 6 +++++- man/AID.Rd | 6 ++---- man/boxcoxfr.Rd | 31 ++++++++++++++++--------------- man/boxcoxnc.Rd | 24 ++++++++++++------------ man/confInt.Rd |only man/confInt.boxcoxfr.Rd |only man/grades.Rd | 7 ++++++- man/textile.Rd | 6 +++++- 15 files changed, 96 insertions(+), 61 deletions(-)
Title: Run 'roxygen2' on (Chunks of) Single Code Files
Description: Have you ever been tempted to create 'roxygen2'-style documentation
comments for one of your functions that was not part of one of your
packages (yet)?
This is exactly what this package is about: running 'roxygen2' on
(chunks of) a single code file.
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <adc-r@arcor.de>
Diff between document versions 1.0.0 dated 2017-05-08 and 1.1.0 dated 2017-05-19
DESCRIPTION | 12 ++--- MD5 | 20 ++++---- NEWS.md | 6 ++ R/document.R | 75 ++++++++++++++++++--------------- inst/doc/Introduction_to_document.html | 2 inst/tests/document_unit_test.txt | 8 +-- inst/tests/files/mini_mal.R |only inst/tests/testthat/test_basic.R | 18 +++++++ man/document.Rd | 18 +++---- tests/document_unit_test.txt | 8 +-- tests/files/mini_mal.R |only tests/testthat/test_basic.R | 18 +++++++ 12 files changed, 118 insertions(+), 67 deletions(-)
Title: A Faster Implementation of the Poisson-Binomial Distribution
Description: Provides the probability, distribution, and quantile functions and random number generator for the Poisson-Binomial distribution. This package relies on FFTW to implement the discrete Fourier transform, so that it is much faster than the existing implementation of the same algorithm in R.
Author: Santiago Olivella [aut, cre],
Yuki Shiraito [aut, cre]
Maintainer: Santiago Olivella <olivella@unc.edu>
Diff between poisbinom versions 1.0.0 dated 2017-05-16 and 1.0.1 dated 2017-05-19
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/poisbinom.cpp | 6 +++--- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Component Models for Multi-Way Data
Description: Fits multi-way component models via alternating least squares algorithms with optional constraints: orthogonal, non-negative, unimodal, monotonic, periodic, smooth, or structure. Fit models include Individual Differences Scaling, Parallel Factor Analysis (1 and 2), Simultaneous Component Analysis, and Tucker Factor Analysis.
Author: Nathaniel E. Helwig <helwig@umn.edu>
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between multiway versions 1.0-2 dated 2016-02-19 and 1.0-3 dated 2017-05-19
ChangeLog | 57 +++++ DESCRIPTION | 12 - MD5 | 82 +++++--- NAMESPACE | 9 R/IsplineBasis.R |only R/MsplineBasis.R |only R/const.control.R |only R/corcondia.R | 10 - R/fitted.parafac2.R | 14 - R/fmnls.R |only R/fsmls.R |only R/fumls.R |only R/indscal.R | 16 + R/parafac.R | 53 +++-- R/parafac2.R | 55 ++++- R/parafac2_3way.R | 348 +++++++++++++++++++++++++++++++----- R/parafac2_4way.R | 450 ++++++++++++++++++++++++++++++++++++++++------- R/parafac_3way.R | 312 +++++++++++++++++++++++++++++--- R/parafac_4way.R | 423 ++++++++++++++++++++++++++++++++++++++++---- R/print.indscal.R |only R/print.parafac.R |only R/print.parafac2.R |only R/print.sca.R |only R/print.tucker.R |only R/reorder.parafac2.R | 5 R/rescale.parafac2.R | 16 + R/rescale.sca.R | 4 R/resign.parafac2.R | 24 +- R/resign.sca.R | 4 R/rfunc.R |only R/sca.R | 43 ++-- R/smpower.R | 15 - R/tucker.R | 9 R/tucker_3way.R | 6 R/tucker_4way.R | 6 data |only man/USalcohol.Rd |only man/const.control.Rd |only man/corcondia.Rd | 2 man/fitted.Rd | 7 man/indscal.Rd | 28 +- man/multiway-internal.Rd | 6 man/multiway-package.Rd | 21 +- man/parafac.Rd | 54 ++++- man/parafac2.Rd | 76 +++++-- man/print.Rd |only man/rescale.Rd | 2 man/resign.Rd | 2 man/sca.Rd | 25 +- man/tucker.Rd | 11 - 50 files changed, 1819 insertions(+), 388 deletions(-)
Title: Easy Handling Discrete Time Markov Chains
Description: Functions and S4 methods to create and manage discrete time Markov
chains more easily. In addition functions to perform statistical (fitting
and drawing random variates) and probabilistic (analysis of their structural
proprieties) analysis are provided.
Author: Giorgio Alfredo Spedicato [aut,cre], Tae Seung Kang [aut], Sai Bhargav
Yalamanchi [aut], Mildenberger Thoralf [ctb], Deepak Yadav [ctb], Nacho Cordón
Castillo [ctb], Vandit Jain [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between markovchain versions 0.6.9 dated 2017-04-05 and 0.6.9.3 dated 2017-05-19
markovchain-0.6.9.3/markovchain/DESCRIPTION | 16 markovchain-0.6.9.3/markovchain/MD5 | 74 +-- markovchain-0.6.9.3/markovchain/NAMESPACE | 2 markovchain-0.6.9.3/markovchain/NEWS | 6 markovchain-0.6.9.3/markovchain/R/0_classesAndMethods.R | 52 +- markovchain-0.6.9.3/markovchain/R/0_ctmcClassesAndMethodsSAI.R | 4 markovchain-0.6.9.3/markovchain/R/1_ctmcProbabilisticSAI.R | 3 markovchain-0.6.9.3/markovchain/R/1_functions4Fitting.R | 40 - markovchain-0.6.9.3/markovchain/R/2_probabilistic.R | 2 markovchain-0.6.9.3/markovchain/R/5_statisticalTests.R | 14 markovchain-0.6.9.3/markovchain/R/RcppExports.R | 4 markovchain-0.6.9.3/markovchain/R/data.R |only markovchain-0.6.9.3/markovchain/build/vignette.rds |binary markovchain-0.6.9.3/markovchain/demo/quickStart.R | 9 markovchain-0.6.9.3/markovchain/inst/doc/an_introduction_to_markovchain_package.R | 221 +++++----- markovchain-0.6.9.3/markovchain/inst/doc/an_introduction_to_markovchain_package.Rnw | 56 +- markovchain-0.6.9.3/markovchain/inst/doc/an_introduction_to_markovchain_package.pdf |binary markovchain-0.6.9.3/markovchain/inst/doc/complicateSteadyStates.pdf |binary markovchain-0.6.9.3/markovchain/inst/doc/higher_order_markov_chains.pdf |binary markovchain-0.6.9.3/markovchain/inst/doc/markovchainCrashIntro.pdf |binary markovchain-0.6.9.3/markovchain/man/blanden.Rd | 32 - markovchain-0.6.9.3/markovchain/man/craigsendi.Rd | 34 - markovchain-0.6.9.3/markovchain/man/holson.Rd | 57 +- markovchain-0.6.9.3/markovchain/man/is.accessible.Rd | 2 markovchain-0.6.9.3/markovchain/man/kullback.Rd | 7 markovchain-0.6.9.3/markovchain/man/markovchain-class.Rd | 6 markovchain-0.6.9.3/markovchain/man/preproglucacon.Rd | 36 - markovchain-0.6.9.3/markovchain/man/rain.Rd | 34 - markovchain-0.6.9.3/markovchain/man/rmarkovchain.Rd | 4 markovchain-0.6.9.3/markovchain/man/sales.Rd | 2 markovchain-0.6.9.3/markovchain/man/statisticalTests.Rd | 2 markovchain-0.6.9.3/markovchain/src/0_classesAndMethods.cpp | 2 markovchain-0.6.9.3/markovchain/src/0_ctmcClassesAndMethodsSAI.cpp | 2 markovchain-0.6.9.3/markovchain/src/1_functions4Fitting.cpp | 31 - markovchain-0.6.9.3/markovchain/src/RcppExports.cpp | 7 markovchain-0.6.9.3/markovchain/src/init.c | 4 markovchain-0.6.9.3/markovchain/tests/testthat/testPeriod.R | 12 markovchain-0.6.9.3/markovchain/vignettes/an_introduction_to_markovchain_package.Rnw | 56 +- markovchain-0.6.9/markovchain/R/sales.R |only 39 files changed, 480 insertions(+), 353 deletions(-)
Title: The Cochran-Armitage Trend Test
Description: This function conducts the Cochran-Armitage trend test to a 2 by k contingency table. It will report the test statistic (Z) and p-value.A linear trend in the frequencies will be calculated, because the weights (0,1,2) will be used by default.
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>
Diff between CATT versions 1.0 dated 2017-02-22 and 2.0 dated 2017-05-19
DESCRIPTION | 9 ++++----- MD5 | 6 +++--- R/CATT.R | 2 +- man/CATT.Rd | 9 ++++++++- 4 files changed, 16 insertions(+), 10 deletions(-)
Title: Functions and Data for the Book 'Applied Hierarchical Modeling
in Ecology'
Description: Provides functions and data sets to accompany the book 'Applied Hierarchical Modeling in Ecology: Analysis of distribution, abundance and species richness in R and BUGS' by Marc Kery and Andy Royle. The first volume appeared early in 2016 (ISBN: 978-0-12-801378-6, <https://www.mbr-pwrc.usgs.gov/pubanalysis/keryroylebook>); the second volume is in preparation and additional functions will be added to this package.
Author: Marc Kery, Andy Royle, Mike Meredith
Maintainer: Mike Meredith <mmeredith@wcs.org>
Diff between AHMbook versions 0.1.3 dated 2017-04-20 and 0.1.4 dated 2017-05-19
DESCRIPTION | 12 - MD5 | 36 +-- NEWS | 25 ++ R/issj.sim.R | 101 +++++------ R/sim-spatialDS_9-8-3_Simulate_spatial_DS.R | 56 ++++-- R/sim-spatialHDS.R | 13 - R/simHDS_8-5-1_Simulate_hierarch_distance_sampling.R | 3 R/simHDSg_9-2-1_Simulate_hierarch_distance_sampling_groups.R | 4 R/simHDSopen.R | 15 - R/simHDStr.R | 2 man/MHB2014.Rd | 6 man/image_scale.Rd | 26 +- man/issj.sim.Rd | 35 ++- man/sim.spatialDS.Rd | 51 ++++- man/sim.spatialHDS.Rd | 2 man/simHDS.Rd | 18 + man/simHDSg.Rd | 13 - man/simHDSopen.Rd | 28 ++- man/simHDStr.Rd | 16 + 19 files changed, 298 insertions(+), 164 deletions(-)