Title: Schumaker Shape-Preserving Spline
Description: This is a shape preserving spline which is guaranteed
to be monotonic and concave or convex if the data is monotonic
and concave or convex. It does not use any optimisation and is
therefore quick and smoothly converges to a fixed point in
economic dynamics problems including value function iteration.
It also automatically gives the first two derivatives of the
spline and options for determining behaviour when evaluated
outside the interpolation domain.
Author: Stuart Baumann [aut, cre], Margaryta Klymak[aut]
Maintainer: Stuart Baumann <Stuart@StuartBaumann.com>
Diff between schumaker versions 0.3 dated 2016-02-29 and 1.0 dated 2017-05-20
DESCRIPTION | 16 +-- MD5 | 25 ++--- R/Schumaker.R | 12 +- build/vignette.rds |binary inst/doc/schumaker.R | 52 +++++----- inst/doc/schumaker.Rmd | 65 +++++++------ inst/doc/schumaker.html | 211 +++++++++++++++++++++++--------------------- man/Schumaker.Rd | 7 - man/SchumakerIndInterval.Rd | 1 man/ppmak.Rd | 1 man/ppmak2Deriv.Rd | 1 man/ppmakDeriv.Rd | 1 vignettes/schumaker.Rmd | 65 +++++++------ vignettes/schumaker.md |only 14 files changed, 239 insertions(+), 218 deletions(-)
Title: Quantify United States County-Level Flood Measurements
Description: Quantifies United States flood impacts at the county level using
United States Geological Service (USGS) River Discharge data for the USGS
API. This package builds on R packages from the USGS, with the goal of
creating county-level time series of flood status that can be more easily
joined with county-level impact measurements, including health outcomes.
This work was supported in part by grants from the National Institute of
Environmental Health Sciences (R00ES022631), the Colorado Water Center,
and the National Science Foundation, Integrative Graduate Education and
Research Traineeship (IGERT) Grant No. DGE-0966346 "I-WATER: Integrated
Water, Atmosphere, Ecosystems Education and Research Program" at
Colorado State University.
Author: Rod Lammers [aut, cre],
Brooke Anderson [aut]
Maintainer: Rod Lammers <rodlammers@gmail.com>
Diff between countyfloods versions 0.0.1 dated 2017-04-01 and 0.0.2 dated 2017-05-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/get_data.R | 10 +++++++--- inst/doc/countyflood.html | 16 ++++++++-------- 4 files changed, 21 insertions(+), 17 deletions(-)
Title: Automatic Item Generator
Description: A collection of Automatic Item Generators used mainly for
psychological research. This package can generate linear syllogistic reasoning,
arithmetic and 2D/3D spatial reasoning items. It is recommended for research
purpose only.
Author: Bao Sheng Loe (Aiden) [aut,cre,cph]
Maintainer: Bao Sheng Loe (Aiden) <bsl28@cam.ac.uk>
Diff between AIG versions 0.1.3 dated 2017-03-15 and 0.1.5 dated 2017-05-20
DESCRIPTION | 9 +-- MD5 | 18 +++---- NAMESPACE | 1 R/MR3d.R | 20 +++++++- R/MRtwoD.R | 110 ++++++++++++++++++++++++++++++++---------------- R/lisy.R | 8 ++- man/lisy.Rd | 2 man/spatial2d.Rd | 24 +++++++--- man/spatial3d.Rd | 10 +++- man/spatial3d_mirror.Rd | 10 +++- 10 files changed, 147 insertions(+), 65 deletions(-)
Title: Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low
Dimensions
Description: An R wrapper for 'libnabo', an exact or approximate k nearest
neighbour library which is optimised for low dimensional spaces (e.g. 3D).
'libnabo' has speed and space advantages over the 'ANN' library wrapped by
package 'RANN'. 'nabor' includes a knn function that is designed as a
drop-in replacement for 'RANN' function nn2. In addition, objects which
include the k-d tree search structure can be returned to speed up repeated
queries of the same set of target points.
Author: Stephane Mangenat (for 'libnabo'), Gregory Jefferis
Maintainer: Gregory Jefferis <jefferis@gmail.com>
Diff between nabor versions 0.4.6 dated 2015-05-28 and 0.4.7 dated 2017-05-20
DESCRIPTION | 7 ++++--- MD5 | 21 +++++++++++---------- NAMESPACE | 2 +- NEWS | 5 +++++ R/RcppExports.R | 2 +- README.md | 16 ++++++++-------- man/WKNN-class.Rd | 47 ++++++++++++++++++++++++----------------------- man/kcpoints.Rd | 3 +-- man/knn.Rd | 35 +++++++++++++++++------------------ man/nabor-package.Rd | 29 ++++++++++++++--------------- src/RcppExports.cpp | 10 +++++----- src/init.c |only 12 files changed, 91 insertions(+), 86 deletions(-)
Title: Extra Functions to Cut, Label and Colour Dendrogram Clusters
Description: Provides extra functions to manipulate dendrograms
that build on the base functions provided by the 'stats' package. The main
functionality it is designed to add is the ability to colour all the edges
in an object of class 'dendrogram' according to cluster membership i.e. each
subtree is coloured, not just the terminal leaves. In addition it provides
some utility functions to cut 'dendrogram' and 'hclust' objects and to
set/get labels.
Author: Gregory Jefferis
Maintainer: Gregory Jefferis <jefferis@gmail.com>
Diff between dendroextras versions 0.2.1 dated 2014-08-04 and 0.2.2 dated 2017-05-20
DESCRIPTION | 20 ++++++++++---------- MD5 | 26 +++++++++++++------------- NAMESPACE | 8 +++++++- NEWS | 4 ++++ R/colour_clusters.R | 3 +++ R/slice.R | 1 + README.md | 18 ++++++++++-------- man/colour_clusters.Rd | 19 ++++++++++--------- man/dendroextras-package.Rd | 27 ++++++++++++++------------- man/labels-assign.Rd | 14 +++++++------- man/labels.hclust.Rd | 12 ++++++------ man/leaf_colours.Rd | 12 ++++++------ man/set_leaf_colours.Rd | 13 +++++++------ man/slice.Rd | 10 +++++----- 14 files changed, 103 insertions(+), 84 deletions(-)
Title: Interface with Google BigQuery with Shiny Compatibility
Description: Interface with 'Google BigQuery',
see <https://cloud.google.com/bigquery/> for more information.
This package uses 'googleAuthR' so is compatible with similar packages,
including 'Google Cloud Storage' (<https://cloud.google.com/storage/>) for result extracts.
Author: Mark Edmondson [aut, cre],
Hadley Wickham [ctb]
Maintainer: Mark Edmondson <r@sunholo.com>
Diff between bigQueryR versions 0.3.0 dated 2017-05-03 and 0.3.1 dated 2017-05-20
DESCRIPTION | 6 MD5 | 26 +- NEWS.md | 5 R/downloadData.R | 4 R/listBigQuery.R | 2 R/partition.R | 4 R/query.R | 6 R/utilities.R | 1 build/vignette.rds |binary inst/doc/bigQueryR.html | 384 +++++++++++++++++++++++++++++--------------- man/bqr_list_projects.Rd | 2 man/bqr_partition.Rd | 4 tests/testthat.R | 1 tests/testthat/test_query.R | 28 +-- 14 files changed, 309 insertions(+), 164 deletions(-)
Title: Power and Sample Size Based on Two One-Sided t-Tests (TOST) for
(Bio)Equivalence Studies
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies.
See function known.designs() for study designs covered.
Moreover the package contains functions for power and sample size
based on 'expected' power in case of uncertain (estimated) variability
and/or uncertain theta0.
-----
Added are functions for the power and sample size for the ratio of
two means with normally distributed data on the original scale
(based on Fieller's confidence ('fiducial') interval).
-----
Contains further functions for power and sample size calculations based on
non-inferiority t-test. This is not a TOST procedure but eventually useful
if the question of 'non-superiority' must be evaluated.
The power and sample size calculations based on non-inferiority test may
also performed via 'expected' power in case of uncertain (estimated)
variability and/or uncertain theta0.
-----
Contains functions power.scABEL() and sampleN.scABEL() to calculate power
and sample size for the BE decision via scaled (widened) BE acceptance
limits (EMA recommended) based on simulations.
Contains also functions scABEL.ad() and sampleN.scABEL.ad() to iteratively
adjust alpha in order to maintain the overall consumer risk in ABEL studies
and adapt the sample size for the loss in power.
Contains further functions power.RSABE() and sampleN.RSABE() to calculate
power and sample size for the BE decision via reference scaled ABE criterion
according to the FDA procedure based on simulations.
Contains further functions power.NTIDFDA() and sampleN.NTIDFDA() to calculate
power and sample size for the BE decision via the FDA procedure for NTID's
based on simulations.
Contains further functions power.HVNTID() and sampleN.HVNTID() to calculate
power and sample size for the BE decision via the FDA procedure for
highly variable NTID's (see FDA Dabigatran / rivaroxaban guidances)
-----
Contains functions for power analysis of a sample size plan for ABE
(pa.ABE()), scaled ABE (pa.scABE()) and scaled ABE for NTID's (pa.NTIDFDA())
analysing power if deviating from assumptions of the plan.
-----
Contains further functions for power calculations / sample size estimation
for dose proportionality studies using the Power model.
Author: Detlew Labes [aut, cre],
Helmut Schuetz [aut],
Benjamin Lang [aut]
Maintainer: Detlew Labes <DetlewLabes@gmx.de>
Diff between PowerTOST versions 1.4-4 dated 2017-03-16 and 1.4-5 dated 2017-05-20
DESCRIPTION | 13 - MD5 | 56 +++--- NAMESPACE | 5 NEWS | 316 +++++++++++++++++++---------------- R/DesignHelpers.R | 115 ++++++------ R/pa.scABE.R | 9 R/power_scABEL_0.R | 32 --- R/power_scABEL_sdsims.R | 212 ++++++++++++++--------- R/pwrA_S3methods.R | 215 ++++++++++++----------- R/sampleN.scABEL.ad.R | 122 ++++++------- R/scABEL.ad.R | 220 ++++++++++++++++-------- R/simulate_replicate_fixed.R | 2 build/partial.rdb |binary inst/doc/Expected_Power_for_TOST.pdf |binary inst/tests/test_ABEL.R |only inst/tests/test_RSABE.R |only man/exppower.noninf.Rd | 28 ++- man/expsampleN.TOST.Rd | 24 ++ man/pa.ABE.Rd | 20 -- man/pa.NTIDFDA.Rd | 26 +- man/pa.scABE.Rd | 37 ++-- man/power.RatioF.Rd | 2 man/power.TOST.sim.Rd | 2 man/power.noninf.Rd | 19 +- man/power.scABEL.sdsims.Rd | 29 ++- man/pvalue.TOST.Rd | 9 man/sampleN.RatioF.Rd | 6 man/sampleN.noninf.Rd | 20 ++ man/sampleN.scABEL.ad.Rd | 138 ++++++++------- man/scABEL.ad.Rd | 231 +++++++++++++++---------- 30 files changed, 1097 insertions(+), 811 deletions(-)
Title: Process and Analyze Mouse-Tracking Data
Description: Mouse-tracking, the analysis of mouse movements in computerized
experiments, is a method that is becoming increasingly popular in the
cognitive sciences. The mousetrap package offers functions for importing,
preprocessing, analyzing, aggregating, and visualizing mouse-tracking data.
Author: Pascal J. Kieslich [aut, cre],
Dirk U. Wulff [aut],
Felix Henninger [aut],
Jonas M. B. Haslbeck [aut],
Sarah Brockhaus [ctb]
Maintainer: Pascal J. Kieslich <kieslich@psychologie.uni-mannheim.de>
Diff between mousetrap versions 3.0.0 dated 2017-02-10 and 3.1.0 dated 2017-05-20
DESCRIPTION | 13 +- MD5 | 125 ++++++++++++++---------- NAMESPACE | 10 + NEWS.md | 32 ++++++ R/RcppExports.R | 36 +++++++ R/add.R | 15 +- R/align.R | 2 R/animate.R |only R/bezier.R |only R/cluster.R | 44 ++++++-- R/cluster_k.R | 133 ++++++++++++++------------ R/data.R | 143 +++++++++++++++++++++++++--- R/derivatives.R | 65 ++++++------ R/deviations.R | 2 R/distmat.R | 62 +++++++----- R/dynlib.R | 2 R/heatmap.R |only R/import.R | 38 +++---- R/map.R | 53 +++++++--- R/measures.R | 18 +-- R/mousetrap.R | 63 ++++++++---- R/preprocess.R | 8 + R/quantileeffect.R |only R/read_mt.R | 12 +- R/riverbed.R | 4 R/sample_entropy.R | 72 ++------------ R/spatialize.R | 24 +++- R/standardize.R | 218 ++++++++++++++++++++++++++++++++++++++----- R/startupmessage.R | 5 R/utils.R | 83 ++++++++++++++++ R/visualize.R | 52 ++++++---- README.md | 3 data/KH2017.rda |only data/KH2017_raw.rda |only data/datalist |only man/KH2017.Rd |only man/KH2017_raw.Rd |only man/bezier.Rd |only man/mousetrap.Rd | 63 ++++++++---- man/mt_add_variables.Rd | 12 +- man/mt_align.Rd | 2 man/mt_animate.Rd |only man/mt_bind.Rd | 2 man/mt_cluster.Rd | 29 ++++- man/mt_cluster_k.Rd | 100 +++++++++++-------- man/mt_count.Rd | 2 man/mt_derivatives.Rd | 49 ++++----- man/mt_deviations.Rd | 2 man/mt_diffmap.Rd |only man/mt_distmat.Rd | 17 ++- man/mt_example_raw.Rd | 30 +++-- man/mt_heatmap.Rd |only man/mt_heatmap_ggplot.Rd |only man/mt_heatmap_raw.Rd |only man/mt_import_mousetrap.Rd | 23 ++-- man/mt_import_wide.Rd | 15 +- man/mt_map.Rd | 47 ++++++--- man/mt_measures.Rd | 18 +-- man/mt_plot.Rd | 52 ++++++---- man/mt_plot_riverbed.Rd | 4 man/mt_qeffect.Rd |only man/mt_sample_entropy.Rd | 22 +--- man/mt_scale_trajectories.Rd |only man/mt_spatialize.Rd | 2 man/mt_standardize.Rd | 22 ++-- man/print.mt_heatmap_raw.Rd |only man/read_mt.Rd | 12 +- man/scale_within.Rd | 8 - src/RcppExports.cpp | 116 ++++++++++++++++++++++ src/distMat.cpp | 18 +-- src/findMax.cpp |only src/mousetrap_init.c |only src/spatialize.cpp | 139 +++++++++++++++++++++++++-- src/standardize.cpp |only 74 files changed, 1514 insertions(+), 629 deletions(-)
Title: Calculate Cluster-Robust p-Values and Confidence Intervals
Description: Calculate p-values and confidence intervals using cluster-adjusted
t-statistics (based on Ibragimov and Muller (2010) <DOI:10.1198/jbes.2009.08046>, pairs cluster bootstrapped t-statistics, and wild cluster bootstrapped t-statistics (the latter two techniques based on Cameron, Gelbach, and Miller (2008) <DOI:10.1162/rest.90.3.414>. Procedures are included for use with GLM, ivreg, plm (pooling or fixed effects), and mlogit models.
Author: Justin Esarey [aut, cre]
Maintainer: Justin Esarey <justin@justinesarey.com>
Diff between clusterSEs versions 2.3.3 dated 2017-03-05 and 2.4 dated 2017-05-20
DESCRIPTION | 10 ++--- MD5 | 44 ++++++++++++----------- R/clusterBS.glm.R | 86 ++++++++++++++++++++++++++++++++++++++++++---- R/clusterBS.ivreg.R | 24 +++++++++++- R/clusterBS.mlogit.R | 29 ++++++++++++--- R/clusterBS.plm.R | 17 ++++++++- R/clusterIM.glm.R | 66 +++++++++++++++++++++++++++++++++-- R/clusterIM.ivreg.R | 14 +++++-- R/clusterIM.mlogit.R | 14 +++++-- R/clusterwild.glm.R | 69 +++++++++++++++++++++++++++++++++++- R/clusterwild.ivreg.R | 21 ++++++++++- R/clusterwild.plm.R | 12 +++++- R/zzz.R |only inst |only man/cluster.bs.glm.Rd | 79 ++++++++++++++++++++++++++++++++++++++---- man/cluster.bs.ivreg.Rd | 20 +++++++--- man/cluster.bs.mlogit.Rd | 22 +++++++---- man/cluster.bs.plm.Rd | 14 ++++--- man/cluster.im.glm.Rd | 67 ++++++++++++++++++++++++++++++++--- man/cluster.im.ivreg.Rd | 13 ++++-- man/cluster.im.mlogit.Rd | 13 ++++-- man/cluster.wild.glm.Rd | 67 ++++++++++++++++++++++++++++++++--- man/cluster.wild.ivreg.Rd | 19 ++++++---- man/cluster.wild.plm.Rd | 13 ++++-- 24 files changed, 616 insertions(+), 117 deletions(-)
Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre],
JJ Allaire [ctb],
RStudio Inc [cph],
Bartek Szopka [ctb] (The jQuery Highlight plugin),
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/resources/AUTHORS),
MathQuill contributors [ctb] (The MathQuill library; authors listed in
inst/resources/AUTHORS),
FriendCode Inc [cph, ctb] (The gitbook style, with modifications)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between bookdown versions 0.3 dated 2016-11-28 and 0.4 dated 2017-05-20
DESCRIPTION | 13 +-- MD5 | 78 ++++++++++-------- NAMESPACE | 2 NEWS.md | 34 +++++++ R/ebook.R | 4 R/gitbook.R | 20 +++- R/html.R | 78 +++++++++++++----- R/latex.R | 39 +++++++-- R/render.R | 11 ++ R/skeleton.R |only R/utils.R | 108 ++++--------------------- R/word.R | 2 inst/CITATION | 4 inst/resources/gitbook/css/plugin-bookdown.css | 3 inst/resources/gitbook/css/plugin-search.css | 3 inst/resources/gitbook/css/style.css | 2 inst/resources/gitbook/js/lunr.js | 2 inst/resources/gitbook/js/plugin-bookdown.js | 18 +++- inst/resources/gitbook/js/plugin-search.js | 2 inst/rstudio/templates |only inst/templates/gitbook.html | 32 +++++-- man/bookdown_site.Rd | 1 man/build_chapter.Rd | 1 man/calibre.Rd | 3 man/clean_book.Rd | 1 man/epub_book.Rd | 1 man/gitbook.Rd | 1 man/html_chapters.Rd | 3 man/html_document2.Rd | 5 - man/kindlegen.Rd | 1 man/pdf_book.Rd | 10 ++ man/publish_book.Rd | 1 man/render_book.Rd | 7 - man/serve_book.Rd | 6 - 34 files changed, 308 insertions(+), 188 deletions(-)