Title: R Interface to TensorFlow
Description: Interface to 'TensorFlow' <https://www.tensorflow.org/>,
an open source software library for numerical computation using data
flow graphs. Nodes in the graph represent mathematical operations,
while the graph edges represent the multidimensional data arrays
(tensors) communicated between them. The flexible architecture allows
you to deploy computation to one or more 'CPUs' or 'GPUs' in a desktop,
server, or mobile device with a single 'API'. 'TensorFlow' was originally
developed by researchers and engineers working on the Google Brain Team
within Google's Machine Intelligence research organization for the
purposes of conducting machine learning and deep neural networks research,
but the system is general enough to be applicable in a wide variety
of other domains as well.
Author: JJ Allaire [aut, cre] (R interface),
RStudio [cph],
Dirk Eddelbuettel [ctb, cph],
Nick Golding [ctb, cph],
Yuan Tang [ctb, cph],
Google Inc. [ctb, cph] (Examples and Tutorials)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between tensorflow versions 0.7 dated 2017-03-22 and 0.8.1 dated 2017-05-25
tensorflow-0.7/tensorflow/inst/examples/tflearn |only tensorflow-0.8.1/tensorflow/DESCRIPTION | 9 tensorflow-0.8.1/tensorflow/MD5 | 26 +- tensorflow-0.8.1/tensorflow/NAMESPACE | 5 tensorflow-0.8.1/tensorflow/R/generics.R | 20 + tensorflow-0.8.1/tensorflow/R/install.R |only tensorflow-0.8.1/tensorflow/R/package.R | 113 ++++++++-- tensorflow-0.8.1/tensorflow/R/reexports.R | 3 tensorflow-0.8.1/tensorflow/R/utils.R |only tensorflow-0.8.1/tensorflow/man/install_tensorflow.Rd |only tensorflow-0.8.1/tensorflow/man/parse_arguments.Rd | 4 tensorflow-0.8.1/tensorflow/man/reexports.Rd | 4 tensorflow-0.8.1/tensorflow/man/tensorflow.Rd | 2 tensorflow-0.8.1/tensorflow/man/tf_config.Rd |only tensorflow-0.8.1/tensorflow/tests/testthat/test-extract-syntax.R | 41 +++ 15 files changed, 177 insertions(+), 50 deletions(-)
Title: Genotype Plus Genotype-by-Environment Biplots
Description: Create biplots for GGE (genotype plus genotype-by-environment) and
GGB (genotype plus genotype-by-block-of-environments) models.
Author: Kevin Wright [aut, cre],
Jean-Louis Laffont [aut]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between gge versions 1.1 dated 2016-10-07 and 1.2 dated 2017-05-25
gge-1.1/gge/inst/doc/gge.R |only gge-1.1/gge/inst/doc/gge.Rmd |only gge-1.1/gge/inst/doc/gge.html |only gge-1.1/gge/tests/gge_tests.R |only gge-1.1/gge/vignettes/gge.Rmd |only gge-1.2/gge/DESCRIPTION | 19 - gge-1.2/gge/MD5 | 29 + gge-1.2/gge/NAMESPACE | 7 gge-1.2/gge/R/RcppExports.R |only gge-1.2/gge/R/gge.R | 537 +++++++++++++++++++++++++++------ gge-1.2/gge/build/vignette.rds |binary gge-1.2/gge/inst/doc/gge_examples.R |only gge-1.2/gge/inst/doc/gge_examples.Rmd |only gge-1.2/gge/inst/doc/gge_examples.html |only gge-1.2/gge/man/RedGrayBlue.Rd | 1 gge-1.2/gge/man/gge.Rd | 85 +++-- gge-1.2/gge/man/nipals.Rd |only gge-1.2/gge/man/rnipals.Rd |only gge-1.2/gge/src |only gge-1.2/gge/tests/testthat |only gge-1.2/gge/tests/testthat.R |only gge-1.2/gge/vignettes/gge_examples.Rmd |only 22 files changed, 530 insertions(+), 148 deletions(-)
Title: Mixed-Effect Models, Particularly Spatial Models
Description: Inference in mixed-effect models, including generalized linear mixed models with spatial
correlations and models with non-Gaussian random effects (e.g., Beta Binomial,
or negative-binomial mixed models). Variation in residual variance is handled and can be modelled
as a linear model. The algorithms are currently various Laplace approximations
methods for likelihood or restricted likelihood, in particular h-likelihood and penalized-likelihood
methods.
Author: François Rousset [aut, cre, cph],
Jean-Baptiste Ferdy [aut, cph],
Alexandre Courtiol [aut],
GSL authors [ctb] (src/gsl_bessel.*)
Maintainer: François Rousset <francois.rousset@umontpellier.fr>
Diff between spaMM versions 2.0.0 dated 2017-04-06 and 2.1.0 dated 2017-05-25
spaMM-2.0.0/spaMM/man/COMPoisson-internal.Rd |only spaMM-2.1.0/spaMM/DESCRIPTION | 8 spaMM-2.1.0/spaMM/MD5 | 155 +++++----- spaMM-2.1.0/spaMM/NAMESPACE | 28 + spaMM-2.1.0/spaMM/R/COMPoisson.R | 102 ++++--- spaMM-2.1.0/spaMM/R/CanonizeRanPars.R | 2 spaMM-2.1.0/spaMM/R/GLM.fit.R | 18 - spaMM-2.1.0/spaMM/R/HLCor.R | 14 spaMM-2.1.0/spaMM/R/HLCor_body.R | 70 ++-- spaMM-2.1.0/spaMM/R/HLFactorList.R | 216 +++++++------- spaMM-2.1.0/spaMM/R/HLfit.R | 16 - spaMM-2.1.0/spaMM/R/HLfit_Internals.R | 232 +++++++++------- spaMM-2.1.0/spaMM/R/HLfit_b_internals.R | 28 + spaMM-2.1.0/spaMM/R/HLfit_body.R | 72 ++-- spaMM-2.1.0/spaMM/R/HLframes.R | 9 spaMM-2.1.0/spaMM/R/LR.R | 7 spaMM-2.1.0/spaMM/R/MakeCovEst.R | 11 spaMM-2.1.0/spaMM/R/RcppExports.R | 2 spaMM-2.1.0/spaMM/R/bloc_lambda.R | 2 spaMM-2.1.0/spaMM/R/calc_LRT.R | 56 +-- spaMM-2.1.0/spaMM/R/calc_logdisp_cov.R | 26 + spaMM-2.1.0/spaMM/R/calc_logdisp_cov_old.R | 53 --- spaMM-2.1.0/spaMM/R/corMatern.R | 21 - spaMM-2.1.0/spaMM/R/corrHLfit.R | 36 -- spaMM-2.1.0/spaMM/R/corrHLfit_body.R | 8 spaMM-2.1.0/spaMM/R/corrMM.LRT.R | 7 spaMM-2.1.0/spaMM/R/correlationFns.R | 154 ++++------ spaMM-2.1.0/spaMM/R/cov_new_fix.R | 50 ++- spaMM-2.1.0/spaMM/R/dispGammaGLM.R | 6 spaMM-2.1.0/spaMM/R/extractors.R | 43 ++ spaMM-2.1.0/spaMM/R/fit_as_ZX.R | 29 ++ spaMM-2.1.0/spaMM/R/fit_as_sparsePrecision.R | 6 spaMM-2.1.0/spaMM/R/fitme.R | 30 -- spaMM-2.1.0/spaMM/R/fitme_body.R | 53 +++ spaMM-2.1.0/spaMM/R/glm.reformat.R | 2 spaMM-2.1.0/spaMM/R/locoptim.R | 13 spaMM-2.1.0/spaMM/R/mapMM.R | 6 spaMM-2.1.0/spaMM/R/negbin.R | 7 spaMM-2.1.0/spaMM/R/newPLS.R | 2 spaMM-2.1.0/spaMM/R/pastefrom.R | 2 spaMM-2.1.0/spaMM/R/plot.HLfit.R | 6 spaMM-2.1.0/spaMM/R/predict.R | 113 ++++--- spaMM-2.1.0/spaMM/R/preprocess.R | 70 +++- spaMM-2.1.0/spaMM/R/preprocess_internals.R | 2 spaMM-2.1.0/spaMM/R/profile.R | 19 - spaMM-2.1.0/spaMM/R/sXaug_EigenSparse_LLP.R | 4 spaMM-2.1.0/spaMM/R/sXaug_Eigen_LDL.R | 2 spaMM-2.1.0/spaMM/R/sXaug_Eigen_LDLP.R | 4 spaMM-2.1.0/spaMM/R/sXaug_Matrix_QRP.R | 8 spaMM-2.1.0/spaMM/R/sXaug_Matrix_cholP.R | 2 spaMM-2.1.0/spaMM/R/sXaug_sparsePrecision.R | 7 spaMM-2.1.0/spaMM/R/sXaug_sparse_QR.R | 2 spaMM-2.1.0/spaMM/R/sXaug_sparse_QRP.R | 2 spaMM-2.1.0/spaMM/R/save.R | 2 spaMM-2.1.0/spaMM/R/simulate.HL.R | 126 ++++---- spaMM-2.1.0/spaMM/R/spaMM.data.R | 4 spaMM-2.1.0/spaMM/R/structures.R | 42 -- spaMM-2.1.0/spaMM/R/summary.HL.R | 48 +-- spaMM-2.1.0/spaMM/inst/NEWS.Rd | 28 + spaMM-2.1.0/spaMM/man/COMPoisson.Rd | 4 spaMM-2.1.0/spaMM/man/GLM.fit.Rd | 17 - spaMM-2.1.0/spaMM/man/HLfit.Rd | 2 spaMM-2.1.0/spaMM/man/arabidopsis.Rd | 2 spaMM-2.1.0/spaMM/man/autoregressive.Rd | 18 - spaMM-2.1.0/spaMM/man/extractors.Rd | 20 - spaMM-2.1.0/spaMM/man/make.scaled.dist.Rd | 1 spaMM-2.1.0/spaMM/man/options.Rd | 9 spaMM-2.1.0/spaMM/man/simulate.HLCor.Rd | 16 - spaMM-2.1.0/spaMM/man/spaMM-conventions.Rd | 2 spaMM-2.1.0/spaMM/man/spaMM-internal-Rcpp.Rd | 2 spaMM-2.1.0/spaMM/man/spaMM-internal.Rd | 16 - spaMM-2.1.0/spaMM/src/COMPoisson.cpp | 4 spaMM-2.1.0/spaMM/tests/testthat/test-CAR.R | 12 spaMM-2.1.0/spaMM/tests/testthat/test-HLfit.R | 2 spaMM-2.1.0/spaMM/tests/testthat/test-confint.R | 2 spaMM-2.1.0/spaMM/tests/testthat/test-fixedLRT.R | 2 spaMM-2.1.0/spaMM/tests/testthat/test-random-slope.R | 2 spaMM-2.1.0/spaMM/tests/testthat/test-spaMM.R | 5 spaMM-2.1.0/spaMM/tests/testthat/test-sparsePrecision.R | 60 +++- 79 files changed, 1247 insertions(+), 1044 deletions(-)
Title: Response Time Distributions
Description: Provides response time distributions (density/PDF, distribution
function/CDF, quantile function, and random generation): (a) Ratcliff
diffusion model (Ratcliff & McKoon, 2008,
<doi:10.1162/neco.2008.12-06-420>) based on C code by Andreas and Jochen
Voss and (b) linear ballistic accumulator (LBA; Brown & Heathcote, 2008,
<doi:10.1016/j.cogpsych.2007.12.002>) with different distributions
underlying the drift rate.
Author: Henrik Singmann [aut, cre],
Scott Brown [aut],
Matthew Gretton [aut],
Andrew Heathcote [aut],
Andreas Voss [ctb],
Jochen Voss [ctb],
Andrew Terry [ctb]
Maintainer: Henrik Singmann <singmann+rtdists@gmail.com>
Diff between rtdists versions 0.6-6 dated 2016-07-15 and 0.7-3 dated 2017-05-25
rtdists-0.6-6/rtdists/inst/extdata/compare_fit_speed.R |only rtdists-0.6-6/rtdists/inst/extdata/prepare_rr98.R |only rtdists-0.6-6/rtdists/inst/extdata/rr98-data |only rtdists-0.6-6/rtdists/inst/extdata/rr98-data.codes |only rtdists-0.6-6/rtdists/inst/extdata/test-recovery-LBA.R |only rtdists-0.6-6/rtdists/inst/extdata/vignette_sav |only rtdists-0.6-6/rtdists/src/Rfastdm2.c |only rtdists-0.6-6/rtdists/src/cdf.c |only rtdists-0.6-6/rtdists/src/density.c |only rtdists-0.6-6/rtdists/src/fast-dm.h |only rtdists-0.6-6/rtdists/src/jvrandom.h |only rtdists-0.6-6/rtdists/src/pde.c |only rtdists-0.6-6/rtdists/src/phi.c |only rtdists-0.6-6/rtdists/src/precision.c |only rtdists-0.6-6/rtdists/src/xmalloc.c |only rtdists-0.7-3/rtdists/DESCRIPTION | 39 - rtdists-0.7-3/rtdists/MD5 | 94 +- rtdists-0.7-3/rtdists/NAMESPACE | 5 rtdists-0.7-3/rtdists/NEWS | 26 rtdists-0.7-3/rtdists/R/RcppExports.R |only rtdists-0.7-3/rtdists/R/diffusion.R | 293 ++------ rtdists-0.7-3/rtdists/R/lba.r | 25 rtdists-0.7-3/rtdists/R/lba_race.R | 2 rtdists-0.7-3/rtdists/R/rtdists-package.R | 10 rtdists-0.7-3/rtdists/R/single-lba.r | 8 rtdists-0.7-3/rtdists/inst/doc/reanalysis_rr98.R | 254 +++---- rtdists-0.7-3/rtdists/inst/doc/reanalysis_rr98.Rmd | 282 ++++---- rtdists-0.7-3/rtdists/inst/doc/reanalysis_rr98.html | 379 ++++++----- rtdists-0.7-3/rtdists/inst/extdata/AUTHORS |only rtdists-0.7-3/rtdists/man/Diffusion.Rd | 59 - rtdists-0.7-3/rtdists/man/LBA-race.Rd | 3 rtdists-0.7-3/rtdists/man/LBA.Rd | 1 rtdists-0.7-3/rtdists/man/deprecated.Rd | 3 rtdists-0.7-3/rtdists/man/rr98.Rd | 1 rtdists-0.7-3/rtdists/man/rtdists-package.Rd | 11 rtdists-0.7-3/rtdists/man/single-LBA.Rd | 21 rtdists-0.7-3/rtdists/man/speed_acc.Rd | 1 rtdists-0.7-3/rtdists/src/CDF_no_variability.h |only rtdists-0.7-3/rtdists/src/CDF_st0_variability.h |only rtdists-0.7-3/rtdists/src/CDF_sv_variability.h |only rtdists-0.7-3/rtdists/src/CDF_sz_variability.h |only rtdists-0.7-3/rtdists/src/Density.h |only rtdists-0.7-3/rtdists/src/Distribution.h |only rtdists-0.7-3/rtdists/src/FCalculator.h |only rtdists-0.7-3/rtdists/src/FController.h |only rtdists-0.7-3/rtdists/src/Parameters.h |only rtdists-0.7-3/rtdists/src/RFastDM.cpp |only rtdists-0.7-3/rtdists/src/RFastDM.h |only rtdists-0.7-3/rtdists/src/RcppExports.cpp |only rtdists-0.7-3/rtdists/src/Sampling.h |only rtdists-0.7-3/rtdists/src/init.c |only rtdists-0.7-3/rtdists/tests/testthat/test-diffusion-bugs.R | 64 + rtdists-0.7-3/rtdists/tests/testthat/test-diffusion-rcpp.R |only rtdists-0.7-3/rtdists/tests/testthat/test-diffusion.R | 193 ----- rtdists-0.7-3/rtdists/tests/testthat/test-lba-bugs.R | 11 rtdists-0.7-3/rtdists/tests/testthat/test-lba-math.R | 18 rtdists-0.7-3/rtdists/tests/testthat/test-lba_input.R | 64 - rtdists-0.7-3/rtdists/tests/testthat/test-lba_race.R | 22 rtdists-0.7-3/rtdists/tests/testthat/test-lba_race_input.R | 14 rtdists-0.7-3/rtdists/tests/testthat/test-pdiffusion_rng.R |only rtdists-0.7-3/rtdists/vignettes/reanalysis_rr98.Rmd | 282 ++++---- rtdists-0.7-3/rtdists/vignettes/rr98_full-diffusion_fits.rda |binary rtdists-0.7-3/rtdists/vignettes/rr98_full-lba_fits.rda |binary 63 files changed, 1071 insertions(+), 1114 deletions(-)
Title: Analysis of Factorial Experiments
Description: Convenience functions for analyzing factorial experiments using ANOVA or
mixed models. aov_ez(), aov_car(), and aov_4() allow specification of between,
within (i.e., repeated-measures), or mixed between-within (i.e., split-plot)
ANOVAs for data in long format (i.e., one observation per row), aggregating
multiple observations per individual and cell of the design. mixed() fits mixed
models using lme4::lmer() and computes p-values for all fixed effects using
either Kenward-Roger or Satterthwaite approximation for degrees of freedom (LMM
only), parametric bootstrap (LMMs and GLMMs), or likelihood ratio tests (LMMs
and GLMMs). afex uses type 3 sums of squares as default (imitating commercial
statistical software).
Author: Henrik Singmann [aut, cre],
Ben Bolker [aut],
Jake Westfall [aut],
Frederik Aust [aut],
Søren Højsgaard [ctb],
John Fox [ctb],
Michael A. Lawrence [ctb],
Ulf Mertens [ctb],
Jonathan Love [ctb]
Maintainer: Henrik Singmann <singmann+afex@gmail.com>
Diff between afex versions 0.17-8 dated 2017-04-13 and 0.18-0 dated 2017-05-25
DESCRIPTION | 43 ++++++++++++++++------------------ MD5 | 34 +++++++++++++------------- NEWS | 14 +++++++++++ R/afex-package.R | 13 +++++++--- R/aov_car.R | 8 +++--- build/vignette.rds |binary inst/doc/afex_anova_example.R | 2 + inst/doc/afex_anova_example.Rmd | 2 + inst/doc/afex_anova_example.html | 40 ++++++++++++++++--------------- inst/doc/afex_mixed_example.R | 4 +-- inst/doc/afex_mixed_example.Rmd | 4 +-- inst/doc/afex_mixed_example.html | 18 +++++++------- man/afex-package.Rd | 13 +++++++--- tests/testthat/test-aov_car-bugs.R | 14 +++++++++++ tests/testthat/test-mixed-bugs.R | 1 tests/testthat/test-mixed-structure.R | 2 + vignettes/afex_anova_example.Rmd | 2 + vignettes/afex_mixed_example.Rmd | 4 +-- 18 files changed, 135 insertions(+), 83 deletions(-)
Title: A Collection of Handy, Useful Functions
Description: A set of little functions that have been found useful to do little
odds and ends such as plotting the results of K-means clustering, substituting
special text characters, viewing parts of a data.frame, constructing formulas
from text and building design and response matrices.
Author: Jared P. Lander
Maintainer: Jared P. Lander <packages@jaredlander.com>
Diff between useful versions 1.2.1 dated 2016-06-29 and 1.2.2 dated 2017-05-25
DESCRIPTION | 15 ++-- LICENSE | 2 MD5 | 145 ++++++++++++++++++++-------------------- NAMESPACE | 5 - NEWS.md | 5 + R/ColumnReorder.r | 8 +- R/buildMatrix.r | 32 +++++--- R/coordinates.r | 8 +- R/corner.r | 18 ++-- R/formatters.r | 2 R/impute.r | 9 -- R/intervals.r | 2 R/subMultiple.r | 2 R/tsPlot.r | 4 - R/unique.r | 2 README.md | 2 man/ComputeHartigan.Rd | 9 +- man/FitKMeans.Rd | 9 +- man/ForceDataFrame.Rd | 1 man/MapToInterval.Rd | 7 - man/PlotHartigan.Rd | 9 +- man/WhichCorner.Rd | 1 man/binary.flip.Rd | 1 man/bottomleft.Rd | 9 +- man/bottomright.Rd | 9 +- man/build.formula.Rd | 7 - man/build.x.Rd | 1 man/build.y.Rd | 7 - man/cart2pol.Rd | 5 - man/classdf.Rd | 1 man/colsToFront.Rd | 7 - man/compare.list.Rd | 1 man/constant.Rd | 3 man/corner.Rd | 19 ++--- man/find.case.Rd | 7 - man/fortify.acf.Rd | 1 man/fortify.kmeans.Rd | 7 - man/fortify.ts.Rd | 1 man/indexToPosition.Rd | 1 man/interval.check.Rd | 3 man/left.Rd | 9 +- man/lower.case.Rd | 7 - man/mixed.case.Rd | 7 - man/moveToFront.Rd | 7 - man/multiple.Rd | 3 man/multiple.comma.Rd | 1 man/multiple.dollar.Rd | 1 man/multiple.identity.Rd | 1 man/multiple_format.Rd | 1 man/numeric.case.Rd | 7 - man/plot.Rd | 5 - man/plot.acf.Rd | 1 man/plot.kmeans.Rd | 7 - man/plotTimesSeries.Rd | 9 +- man/pol2cart.Rd | 5 - man/positionToIndex.Rd | 1 man/reclass.Rd | 1 man/right.Rd | 9 +- man/shift.column.Rd | 1 man/simple.impute.Rd | 1 man/simple.impute.data.frame.Rd | 3 man/simple.impute.default.Rd | 1 man/simple.impute.tbl_df.Rd | 1 man/subMultiple.Rd | 5 - man/subOut.Rd | 7 - man/subSpecials.Rd | 11 +-- man/topleft.Rd | 9 +- man/topright.Rd | 9 +- man/ts.plotter.Rd | 1 man/uniqueBidirection.Rd | 3 man/upper.case.Rd | 7 - man/useful.Rd | 2 man/vplayout.Rd | 1 tests/testthat/test-matrix.R |only 74 files changed, 240 insertions(+), 291 deletions(-)
Title: Sparse Arrays and Multivariate Polynomials
Description: Sparse arrays interpreted as multivariate polynomials.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between spray versions 1.0 dated 2016-03-11 and 1.0-3 dated 2017-05-25
spray-1.0-3/spray/DESCRIPTION | 9 spray-1.0-3/spray/MD5 | 49 +- spray-1.0-3/spray/NAMESPACE | 8 spray-1.0-3/spray/R/RcppExports.R | 14 spray-1.0-3/spray/R/spray.R | 175 ++++++++-- spray-1.0-3/spray/R/spray_ops.R | 26 - spray-1.0-3/spray/build/vignette.rds |binary spray-1.0-3/spray/inst/doc/spray.R | 171 +++++++--- spray-1.0-3/spray/inst/doc/spray.Rnw | 577 +++++++++++++++++++++++++--------- spray-1.0-3/spray/inst/doc/spray.pdf |binary spray-1.0-3/spray/man/Extract.Rd | 11 spray-1.0-3/spray/man/arity.Rd | 2 spray-1.0-3/spray/man/as.array.Rd | 2 spray-1.0-3/spray/man/deriv.Rd | 2 spray-1.0-3/spray/man/homog.Rd | 7 spray-1.0-3/spray/man/pmax.Rd |only spray-1.0-3/spray/man/print.Rd | 22 + spray-1.0-3/spray/man/rspray.Rd |only spray-1.0-3/spray/man/spray.Rd | 21 + spray-1.0-3/spray/man/spray_cpp.Rd | 38 ++ spray-1.0-3/spray/man/zero.Rd | 11 spray-1.0-3/spray/src/RcppExports.cpp | 131 +++++-- spray-1.0-3/spray/src/spray_init.c |only spray-1.0-3/spray/src/spray_ops.cpp | 124 ++++++- spray-1.0-3/spray/tests/aaa.R |only spray-1.0-3/spray/vignettes/spray.Rnw | 577 +++++++++++++++++++++++++--------- spray-1.0-3/spray/vignettes/spray.bib | 61 +++ spray-1.0/spray/R/zero.R |only 28 files changed, 1556 insertions(+), 482 deletions(-)
Title: Clinical Trial Simulations
Description: Provides a general framework for clinical trial simulations based
on the Clinical Scenario Evaluation (CSE) approach. The package supports a
broad class of data models (including clinical trials with continuous, binary,
survival-type and count-type endpoints as well as multivariate outcomes that are
based on combinations of different endpoints), analysis strategies and commonly
used evaluation criteria.
Author: Gautier Paux, Alex Dmitrienko.
Maintainer: Gautier Paux <gautier@paux.fr>
Diff between Mediana versions 1.0.4 dated 2017-02-07 and 1.0.5 dated 2017-05-25
DESCRIPTION | 12 +++++++----- MD5 | 37 ++++++++++++++++++++++++++++++------- NAMESPACE | 2 ++ NEWS.md | 16 +++++++++++++++- R/AdjustCIs.R |only R/AdjustPvalues.R |only R/BonferroniAdj.CI.R |only R/CDFDunnett.R |only R/DunnettAdj.CI.R |only R/DunnettAdj.R |only R/FixedSeqAdj.CI.R |only R/GeneratePatients.R | 3 +-- R/HolmAdj.CI.R |only R/StepDownDunnettAdj.CI.R |only R/StepDownDunnettAdj.R |only R/WeibullDist.R |only R/qdunnett.R |only README.md | 2 +- build |only inst |only man/AdjustCIs.Rd |only man/AdjustPvalues.Rd |only man/Mediana-package.Rd | 4 ++-- man/OutcomeDist.Rd | 1 + vignettes |only 25 files changed, 59 insertions(+), 18 deletions(-)
Title: Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models
Description: Manipulation of genetic data (SNPs), computation of Genetic Relationship Matrix, Linkage Disequilibrium, etc. Efficient algorithms for Linear Mixed Model (AIREML, diagonalization trick).
Author: Hervé Perdry & Claire Dandine-Roulland
Maintainer: Hervé Perdry <herve.perdry@u-psud.fr>
Diff between gaston versions 1.4.9 dated 2016-11-29 and 1.5 dated 2017-05-25
gaston-1.4.9/gaston/R/ld_plot_exemple.r |only gaston-1.4.9/gaston/src/Makevars.win |only gaston-1.4.9/gaston/src/diago.h |only gaston-1.4.9/gaston/src/diago_full.h |only gaston-1.4.9/gaston/src/diago_full_nocovar.h |only gaston-1.4.9/gaston/src/diago_nocovar.h |only gaston-1.4.9/gaston/src/diago_wrapers.cpp |only gaston-1.4.9/gaston/src/diago_wrapers.h |only gaston-1.4.9/gaston/src/gwas_lmm_diago_lrt_mt.cpp |only gaston-1.4.9/gaston/src/gwas_lmm_diago_wald_mt.cpp |only gaston-1.4.9/gaston/src/lmm_diago.cpp |only gaston-1.4.9/gaston/src/lmm_diago_full.cpp |only gaston-1.4.9/gaston/src/lmm_diago_nocovar.cpp |only gaston-1.4.9/gaston/src/m4_read_vcf.cpp |only gaston-1.4.9/gaston/src/optimize.cpp |only gaston-1.4.9/gaston/src/optimize.h |only gaston-1.5/gaston/DESCRIPTION | 10 - gaston-1.5/gaston/MD5 | 185 +++++++++++--------- gaston-1.5/gaston/NAMESPACE | 7 gaston-1.5/gaston/R/bm.r | 1 gaston-1.5/gaston/R/bm_as_bm.r | 8 gaston-1.5/gaston/R/bm_bind.r | 14 - gaston-1.5/gaston/R/bm_files.r | 45 ---- gaston-1.5/gaston/R/bm_grm.r | 29 ++- gaston-1.5/gaston/R/bm_hwe.r | 8 gaston-1.5/gaston/R/bm_interface.r | 16 - gaston-1.5/gaston/R/bm_ld.r | 8 gaston-1.5/gaston/R/bm_ld_thinner.r | 5 gaston-1.5/gaston/R/bm_merge.r | 2 gaston-1.5/gaston/R/bm_product.r | 12 - gaston-1.5/gaston/R/bm_select.r | 30 +++ gaston-1.5/gaston/R/bm_stats.r | 6 gaston-1.5/gaston/R/bm_vcf.r |only gaston-1.5/gaston/R/gwas.r | 91 ++++++--- gaston-1.5/gaston/R/lmm_aireml.r | 30 +-- gaston-1.5/gaston/R/lmm_diago.r | 23 +- gaston-1.5/gaston/R/lmm_diago_full.r |only gaston-1.5/gaston/R/logistic_mm_aireml.r | 14 + gaston-1.5/gaston/R/score.r | 2 gaston-1.5/gaston/R/zzz.r | 15 + gaston-1.5/gaston/TODO | 1 gaston-1.5/gaston/inst/doc/gaston.R | 110 +++++------ gaston-1.5/gaston/inst/doc/gaston.Rnw | 1 gaston-1.5/gaston/inst/doc/gaston.pdf |binary gaston-1.5/gaston/inst/extdata/LCT.vcf.gz |binary gaston-1.5/gaston/inst/include |only gaston-1.5/gaston/man/DM.Rd |only gaston-1.5/gaston/man/GRM.Rd | 6 gaston-1.5/gaston/man/LCT.Rd | 2 gaston-1.5/gaston/man/LD.thin.Rd | 2 gaston-1.5/gaston/man/Tests.Rd |only gaston-1.5/gaston/man/association.test.Rd | 17 - gaston-1.5/gaston/man/is.autosome.Rd | 4 gaston-1.5/gaston/man/lmm.diago.Rd | 12 - gaston-1.5/gaston/man/lmm.diago.likelihood.Rd | 26 +- gaston-1.5/gaston/man/lmm.simu.Rd | 2 gaston-1.5/gaston/man/read.bed.matrix.Rd | 2 gaston-1.5/gaston/man/read.vcf.Rd | 32 ++- gaston-1.5/gaston/man/select.inds.Rd | 6 gaston-1.5/gaston/man/select.snps.Rd | 6 gaston-1.5/gaston/man/write.bed.matrix.Rd | 2 gaston-1.5/gaston/src/Makevars | 4 gaston-1.5/gaston/src/ai-reml-1k-covar.h | 6 gaston-1.5/gaston/src/ai-reml-1k.h | 4 gaston-1.5/gaston/src/ai-reml-logit-1k-covar.cpp |only gaston-1.5/gaston/src/ai-reml-logit-1k-covar.h | 82 ++++---- gaston-1.5/gaston/src/ai-reml-logit-1k.h | 4 gaston-1.5/gaston/src/ai-reml-logit-nk-covar.h | 53 ++--- gaston-1.5/gaston/src/ai-reml-logit-nk.h | 5 gaston-1.5/gaston/src/ai-reml-nk-covar.h | 4 gaston-1.5/gaston/src/any.h | 4 gaston-1.5/gaston/src/diago2.h |only gaston-1.5/gaston/src/diago2_full.h |only gaston-1.5/gaston/src/diago2_full_nocovar.h |only gaston-1.5/gaston/src/diago2_nocovar.h |only gaston-1.5/gaston/src/export-logit.cpp |only gaston-1.5/gaston/src/gaston_init.c |only gaston-1.5/gaston/src/gwas_lm_quanti.cpp | 6 gaston-1.5/gaston/src/gwas_lmm_diago_lrt.cpp | 146 ++++++--------- gaston-1.5/gaston/src/gwas_lmm_diago_wald.cpp | 165 +++++++---------- gaston-1.5/gaston/src/gwas_lmm_score.cpp | 80 ++++++++ gaston-1.5/gaston/src/gwas_logit_wald.cpp |only gaston-1.5/gaston/src/gwas_logitmm_wald.cpp |only gaston-1.5/gaston/src/gzstream.cpp |only gaston-1.5/gaston/src/gzstream.h |only gaston-1.5/gaston/src/lmm_diago_fit.cpp |only gaston-1.5/gaston/src/lmm_diago_full_likelihood.cpp |only gaston-1.5/gaston/src/lmm_diago_likelihood.cpp |only gaston-1.5/gaston/src/lmm_diago_min_max_h2.cpp |only gaston-1.5/gaston/src/lmm_diago_min_max_h2.h |only gaston-1.5/gaston/src/logit.h |only gaston-1.5/gaston/src/loubar.h | 14 - gaston-1.5/gaston/src/m4_bed.cpp | 5 gaston-1.5/gaston/src/m4_kinship_p.cpp | 81 ++------ gaston-1.5/gaston/src/m4_kinship_type.h | 3 gaston-1.5/gaston/src/m4_ld.h | 4 gaston-1.5/gaston/src/m4_read_vcf_2.cpp |only gaston-1.5/gaston/src/m4_stats.cpp | 1 gaston-1.5/gaston/src/matrix-varia.cpp | 43 ++++ gaston-1.5/gaston/src/matrix-varia.h | 8 gaston-1.5/gaston/src/matrix4.cpp | 3 gaston-1.5/gaston/src/matrix4.h | 44 +++- gaston-1.5/gaston/src/optimize_2.h |only gaston-1.5/gaston/vignettes/gaston.Rnw | 1 104 files changed, 872 insertions(+), 690 deletions(-)
Title: A Fast and Scalable Joint Estimator for Learning Multiple
Related Sparse Gaussian Graphical Models
Description: The FASJEM (A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models) is a joint estimator which is fast and scalable for learning multiple related sparse Gaussian graphical models. For more details, please see <https://www.cs.virginia.edu/yanjun/paperA14/2017_JEM_combined.pdf>.
Author: Beilun Wang [aut, cre], Yanjun Qi [aut]
Maintainer: Beilun Wang <bw4mw@virginia.edu>
Diff between fasjem versions 1.0.0 dated 2017-04-21 and 1.1.0 dated 2017-05-25
DESCRIPTION | 10 +++++----- MD5 | 16 +++++++++++++--- NAMESPACE | 5 ++++- R/fasjem.R | 40 ++++++++++++++++++++++++++++++++++++++++ R/net.degree.R |only R/net.edges.R |only R/net.hubs.R |only R/net.neighbors.R |only man/fasjem-internal.Rd |only man/fasjem-package.Rd |only man/net.degree.Rd |only man/net.edges.Rd |only man/net.hubs.Rd |only man/net.neighbors.Rd |only 14 files changed, 62 insertions(+), 9 deletions(-)
Title: Lightweight Biology Software Installer
Description: Can be used to install and download massive bioinformatics analysis softwares and databases, such as NGS reads mapping tools with its required databases.
Author: Jianfeng Li [aut, cre]
Maintainer: Jianfeng Li <lee_jianfeng@sjtu.edu.cn>
Diff between BioInstaller versions 0.1.0 dated 2017-04-25 and 0.1.1 dated 2017-05-25
BioInstaller-0.1.0/BioInstaller/tests/testthat/test_a_info.R |only BioInstaller-0.1.0/BioInstaller/tests/testthat/test_b_github.R |only BioInstaller-0.1.0/BioInstaller/tests/testthat/test_c_nongithub.R |only BioInstaller-0.1.0/BioInstaller/tests/testthat/test_d_pull_ftp.R |only BioInstaller-0.1.0/BioInstaller/tests/testthat/test_e_utils.R |only BioInstaller-0.1.0/BioInstaller/tests/testthat/test_f_active.R |only BioInstaller-0.1.1/BioInstaller/ChangeLog | 38 BioInstaller-0.1.1/BioInstaller/DESCRIPTION | 8 BioInstaller-0.1.1/BioInstaller/MD5 | 47 BioInstaller-0.1.1/BioInstaller/R/info.R | 66 - BioInstaller-0.1.1/BioInstaller/R/install.R | 462 ++++---- BioInstaller-0.1.1/BioInstaller/R/install_utils.R | 120 +- BioInstaller-0.1.1/BioInstaller/R/utils_function.R | 39 BioInstaller-0.1.1/BioInstaller/R/versions.R |only BioInstaller-0.1.1/BioInstaller/README.md | 44 BioInstaller-0.1.1/BioInstaller/inst/extdata/github.toml | 519 ++++------ BioInstaller-0.1.1/BioInstaller/inst/extdata/nongithub.toml | 476 ++++++--- BioInstaller-0.1.1/BioInstaller/inst/extdata/parse_version.R | 134 ++ BioInstaller-0.1.1/BioInstaller/inst/extdata/scripts/echo_root_env.sh |only BioInstaller-0.1.1/BioInstaller/man/change.info.Rd | 8 BioInstaller-0.1.1/BioInstaller/man/del.info.Rd | 10 BioInstaller-0.1.1/BioInstaller/man/get.info.Rd | 10 BioInstaller-0.1.1/BioInstaller/man/install.bioinfo.Rd | 29 BioInstaller-0.1.1/BioInstaller/man/install.github.Rd | 19 BioInstaller-0.1.1/BioInstaller/man/install.nongithub.Rd | 20 BioInstaller-0.1.1/BioInstaller/man/show.installed.Rd | 10 BioInstaller-0.1.1/BioInstaller/tests/testthat/test_active.R |only BioInstaller-0.1.1/BioInstaller/tests/testthat/test_info.R |only BioInstaller-0.1.1/BioInstaller/tests/testthat/test_install.R |only BioInstaller-0.1.1/BioInstaller/tests/testthat/test_install_uilts.R |only BioInstaller-0.1.1/BioInstaller/tests/testthat/test_utils.R |only 31 files changed, 1240 insertions(+), 819 deletions(-)
Title: Soil Physical Analysis
Description: Basic and model-based soil physical analyses.
Author: Anderson Rodrigo da Silva, Renato Paiva de Lima
Maintainer: Anderson Rodrigo da Silva <anderson.agro@hotmail.com>
Diff between soilphysics versions 3.0 dated 2016-01-11 and 3.1 dated 2017-05-25
soilphysics-3.0/soilphysics/man/figures/sigmaPfluxo.png |only soilphysics-3.1/soilphysics/DESCRIPTION | 8 +- soilphysics-3.1/soilphysics/MD5 | 27 ++++++---- soilphysics-3.1/soilphysics/NAMESPACE | 5 + soilphysics-3.1/soilphysics/NEWS | 10 +++ soilphysics-3.1/soilphysics/R/llwr.R | 16 ++++- soilphysics-3.1/soilphysics/R/llwrPTF.R |only soilphysics-3.1/soilphysics/R/soilDeformation.R |only soilphysics-3.1/soilphysics/R/soilStrength.R |only soilphysics-3.1/soilphysics/R/stressTraffic.r |only soilphysics-3.1/soilphysics/inst/CITATION | 17 ++++++ soilphysics-3.1/soilphysics/man/figures/SMP.jpeg |only soilphysics-3.1/soilphysics/man/figures/limitsSoilTraffic.jpg |only soilphysics-3.1/soilphysics/man/figures/sigmaPfluxo.jpg |binary soilphysics-3.1/soilphysics/man/llwrPTF.Rd |only soilphysics-3.1/soilphysics/man/sigmaP.Rd | 2 soilphysics-3.1/soilphysics/man/soilDeformation.Rd |only soilphysics-3.1/soilphysics/man/soilStrength.Rd |only soilphysics-3.1/soilphysics/man/soilphysics-package.Rd | 22 ++++---- soilphysics-3.1/soilphysics/man/stressTraffic.Rd |only 20 files changed, 80 insertions(+), 27 deletions(-)
Title: Weighted Generalized Estimating Equations and Model Selection
Description: Weighted generalized estimating equations (WGEE) is an extension of generalized linear models to longitudinal clustered data by incorporating the correlation within-cluster when data is missing at random (MAR). The parameters in mean, scale correlation structures are estimated based on quasi-likelihood. Multiple model selection criterion are provided for selection of mean model and working correlation structure based on WGEE/GEE.
Author: Cong Xu <congxu17@gmail.com>, Zheng Li <zheng.li@outlook.com>,
Ming Wang <mwang@phs.psu.edu>
Maintainer: Zheng Li <zheng.li@outlook.com>
Diff between wgeesel versions 1.2 dated 2017-05-04 and 1.3 dated 2017-05-25
DESCRIPTION | 8 +++---- MD5 | 12 +++++------ R/MLIC.gee.R | 58 +++++++++++++++++++++++++++++++------------------------- R/QIC.gee.R | 4 ++- R/QICW.gee.R | 48 ++++++++++++++++++++++++---------------------- man/MLIC.gee.Rd | 2 - man/QICW.gee.Rd | 2 - 7 files changed, 73 insertions(+), 61 deletions(-)
Title: Non-Homogeneous Markov Switching Autoregressive Models
Description: Calibration, simulation, validation of (non-)homogeneous Markov switching autoregressive models with Gaussian or von Mises innovations. Penalization methods are implemented for Markov Switching Vector Autoregressive Models of order 1 only. Most functions of the package handle missing values.
Author: Valerie Monbet
Maintainer: Valerie Monbet <valerie.monbet@gmail.com>
Diff between NHMSAR versions 1.4 dated 2016-04-24 and 1.5 dated 2017-05-25
NHMSAR-1.4/NHMSAR/R/valid_all.R |only NHMSAR-1.4/NHMSAR/man/valid_all.Rd |only NHMSAR-1.5/NHMSAR/DESCRIPTION | 9 +++--- NHMSAR-1.5/NHMSAR/MD5 | 41 +++++++++++++++---------------- NHMSAR-1.5/NHMSAR/NAMESPACE | 4 +-- NHMSAR-1.5/NHMSAR/R/ENu_graph.R | 8 +++--- NHMSAR-1.5/NHMSAR/R/MeanDurOver.R | 23 +++++++++-------- NHMSAR-1.5/NHMSAR/R/MeanDurUnder.R | 29 +++++++++++++++------ NHMSAR-1.5/NHMSAR/R/cor.MSAR.R | 15 ++++++----- NHMSAR-1.5/NHMSAR/R/cross.cor.MSAR.R | 22 +++++++++------- NHMSAR-1.5/NHMSAR/R/cross.cor1.MSAR.R |only NHMSAR-1.5/NHMSAR/R/forecast.prob.MSAR.R | 2 - NHMSAR-1.5/NHMSAR/R/regimes.plot.MSAR.R | 2 - NHMSAR-1.5/NHMSAR/R/simule.nh.MSAR.R | 12 ++++----- NHMSAR-1.5/NHMSAR/R/valid_all.MSAR.R |only NHMSAR-1.5/NHMSAR/data/PibDetteDemoc.rda |binary NHMSAR-1.5/NHMSAR/data/Wind.rda |binary NHMSAR-1.5/NHMSAR/data/WindDir.rda |binary NHMSAR-1.5/NHMSAR/data/meteo.data.rda |binary NHMSAR-1.5/NHMSAR/man/MeanDurOver.Rd | 8 +++--- NHMSAR-1.5/NHMSAR/man/MeanDurUnder.Rd | 5 ++- NHMSAR-1.5/NHMSAR/man/cor.MSAR.Rd | 5 +++ NHMSAR-1.5/NHMSAR/man/cross.cor.MSAR.Rd | 5 +++ NHMSAR-1.5/NHMSAR/man/valid_all.MSAR.Rd |only 24 files changed, 109 insertions(+), 81 deletions(-)
Title: Efficient Network Enrichment Analysis Test
Description: Includes functions and examples to compute NEAT, the Network Enrichment Analysis Test described in Signorelli et al. (2016, <DOI:10.1186/s12859-016-1203-6>).
Author: Mirko Signorelli, Veronica Vinciotti and Ernst C. Wit
Maintainer: Mirko Signorelli <m.signorelli@rug.nl>
Diff between neat versions 1.0 dated 2016-09-07 and 1.1 dated 2017-05-25
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/neat.R | 14 ++++++++++++-- man/neat-package.Rd | 2 +- 4 files changed, 21 insertions(+), 11 deletions(-)
Title: Statistical Toolbox for Radiometric Geochronology
Description: An R implementation of Ken Ludwig's popular Isoplot add-in to Microsoft Excel. Currently plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams. Calculates concordia and discordia ages. Performs linear regression of measurements with correlated errors using the 'York' approach. Generates Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs). Produces Multidimensional Scaling (MDS) configurations and Shepard plots of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as a dissimilarity measure. Calculates 40Ar/39Ar ages, isochrons, and age spectra. Computes weighted means accounting for overdispersion. Calculates U-Th-He (single grain and central) ages, logratio plots and ternary diagrams. Processes fission track data using the external detector method and LA-ICP-MS, calculates central ages and plots fission track and other data on radial (a.k.a. 'Galbraith' plots). Constructs Re-Os, Sm-Nd, Lu-Hf and Rb-Sr isochrons. Future versions will include functionality for K-Ar, Pb-Pb and U-series dating methods.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between IsoplotR versions 0.12 dated 2017-05-07 and 0.13 dated 2017-05-25
DESCRIPTION | 10 +++--- MD5 | 80 ++++++++++++++++++++++++++-------------------------- NAMESPACE | 7 ++++ R/LuHf.R |only R/RbSr.R | 18 +++++------ R/ReOs.R | 48 ++++++++++++++++--------------- R/SmNd.R | 22 +++++++------- R/age.R | 49 ++++++++++++++++++++----------- R/cad.R | 20 +++++++++---- R/central.R | 54 ++++++++++++++++++++--------------- R/constants.R | 26 +++++++++++++--- R/documentation.R | 13 +++++++- R/io.R | 12 +++++++ R/isochron.R | 19 ++++++++++-- R/kde.R | 25 +++++++++++++--- R/peakfit.R | 22 +++++++++----- R/radialplot.R | 27 +++++++++++++---- R/toolbox.R | 1 R/weightedmean.R | 27 +++++++++++++---- data/examples.rda |binary inst/LuHf1.csv |only inst/LuHf2.csv | 19 +++--------- inst/ReOs1.csv | 16 +++++----- inst/constants.json | 15 +++++++-- man/age.Rd | 50 ++++++++++++++++++-------------- man/agespectrum.Rd | 3 - man/cad.Rd | 23 ++++++++------ man/central.Rd | 9 +++-- man/concordia.Rd | 1 man/ellipse.Rd | 1 man/examples.Rd | 14 +++++++-- man/helioplot.Rd | 1 man/isochron.Rd | 14 +++++---- man/kde.Rd | 24 +++++++++------ man/mds.Rd | 1 man/peakfit.Rd | 25 +++++++++------- man/radialplot.Rd | 33 ++++++++++++--------- man/read.data.Rd | 11 ++++++- man/set.zeta.Rd | 1 man/settings.Rd | 27 +++++++++++++---- man/weightedmean.Rd | 23 +++++++++----- man/yorkfit.Rd | 1 42 files changed, 500 insertions(+), 292 deletions(-)
Title: Tools for Biometry and Applied Statistics in Agricultural
Science
Description: Tools designed to perform and work with cluster analysis (including Tocher's algorithm),
discriminant analysis and path analysis (standard and under collinearity), as well as some
useful miscellaneous tools for dealing with sample size and optimum plot size calculations.
Mantel's permutation test can be found in this package. A new approach for calculating its
power is implemented. biotools also contains the new tests for genetic covariance components.
An approach for predicting spatial gene diversity is implemented.
Author: Anderson Rodrigo da Silva
Maintainer: Anderson Rodrigo da Silva <anderson.agro@hotmail.com>
Diff between biotools versions 3.0 dated 2016-02-03 and 3.1 dated 2017-05-25
DESCRIPTION | 9 +++++---- MD5 | 13 +++++++------ NEWS | 7 +++++++ R/fitplotsize.R | 3 +-- inst |only man/biotools-package.Rd | 9 +++++++-- man/fitplotsize.Rd | 4 ---- man/sHe.Rd | 4 ++++ 8 files changed, 31 insertions(+), 18 deletions(-)
Title: Text Corpus Analysis
Description: Text corpus data analysis, with full support for Unicode. Functions for reading data from newline-delimited JSON files, for normalizing and tokenizing text, and for computing term occurrence frequencies.
Author: Patrick O. Perry [aut, cre],
Martin Porter and Richard Boulton [ctb, cph] (Snowball),
Unicode, Inc. [ctb, cph] (Unicode Character Database)
Maintainer: Patrick O. Perry <pperry@stern.nyu.edu>
Diff between corpus versions 0.5.0 dated 2017-05-23 and 0.5.1 dated 2017-05-25
corpus-0.5.0/corpus/R/jsondata.R |only corpus-0.5.0/corpus/src/jsondata.c |only corpus-0.5.0/corpus/tests/testthat/test-jsondata_record.R |only corpus-0.5.0/corpus/tests/testthat/test-jsondata_scalar.R |only corpus-0.5.0/corpus/tests/testthat/test-jsondata_serialize.R |only corpus-0.5.1/corpus/DESCRIPTION | 8 corpus-0.5.1/corpus/MD5 | 42 corpus-0.5.1/corpus/NAMESPACE | 84 corpus-0.5.1/corpus/NEWS | 11 corpus-0.5.1/corpus/R/json.R |only corpus-0.5.1/corpus/R/text-proc.R | 9 corpus-0.5.1/corpus/R/text.R | 55 corpus-0.5.1/corpus/man/text.Rd | 2 corpus-0.5.1/corpus/src/init.c | 30 corpus-0.5.1/corpus/src/json.c | 1186 ++++++++++- corpus-0.5.1/corpus/src/ndjson.c |only corpus-0.5.1/corpus/src/rcorpus.h | 42 corpus-0.5.1/corpus/src/text.c | 24 corpus-0.5.1/corpus/src/tokens.c | 19 corpus-0.5.1/corpus/tests/testthat/test-json_record.R |only corpus-0.5.1/corpus/tests/testthat/test-json_scalar.R |only corpus-0.5.1/corpus/tests/testthat/test-json_serialize.R |only corpus-0.5.1/corpus/tests/testthat/test-read_ndjson.R | 15 corpus-0.5.1/corpus/tests/testthat/test-sentences.R | 2 corpus-0.5.1/corpus/tests/testthat/test-term_matrix.R | 8 corpus-0.5.1/corpus/tests/testthat/test-text.R | 2 corpus-0.5.1/corpus/tests/testthat/test-text_names.R | 2 27 files changed, 1369 insertions(+), 172 deletions(-)
Title: A Constrained L1 Minimization Approach for Estimating Multiple
Sparse Gaussian or Nonparanormal Graphical Models
Description: The SIMULE (Shared and Individual parts of MULtiple graphs Explicitly) is a generalized method for estimating multiple related graphs with shared and individual pattern among graphs. For more details, please see <arXiv:1605.03468>.
Author: Beilun Wang [aut, cre], Yanjun Qi [aut]
Maintainer: Beilun Wang <bw4mw@virginia.edu>
Diff between simule versions 1.0.0 dated 2017-04-19 and 1.1.0 dated 2017-05-25
DESCRIPTION | 10 +++++----- MD5 | 18 ++++++++++++++---- NAMESPACE | 6 ++++-- R/net.degree.R |only R/net.edges.R |only R/net.hubs.R |only R/net.neighbors.R |only R/simule.R | 44 +++++++++++++++++++++++++++++++++++++++++++- man/net.degree.Rd |only man/net.edges.Rd |only man/net.hubs.Rd |only man/net.neighbors.Rd |only man/simule-internal.Rd |only man/simule-package.Rd |only man/simule.Rd | 9 +++++++++ 15 files changed, 75 insertions(+), 12 deletions(-)
Title: Random Partition Distribution Indexed by Pairwise Information
Description: Implementations are provided for the models described in the paper D. B. Dahl, R. Day, J. Tsai (2017) <DOI:10.1080/01621459.2016.1165103>. The Ewens, Ewens-Pitman, Ewens attraction, Ewens-Pitman attraction, and ddCRP distributions are available for prior simulation. We hope in the future to add posterior simulation with a user-supplied likelihood. Supporting functions for partition estimation and plotting are also planned.
Author: David B. Dahl [aut, cre],
The Apache Software Foundation [ctb, cph]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between shallot versions 0.3.1 dated 2017-05-12 and 0.3.2 dated 2017-05-25
shallot-0.3.1/shallot/inst/java/commons-math3-3.6.1.jar |only shallot-0.3.1/shallot/inst/java/scala-2.10/shallot_2.10-0.3.1.jar |only shallot-0.3.1/shallot/inst/java/scala-2.11/shallot_2.11-0.3.1.jar |only shallot-0.3.1/shallot/inst/java/scala-2.12/shallot_2.12-0.3.1.jar |only shallot-0.3.2/shallot/DESCRIPTION | 12 +- shallot-0.3.2/shallot/MD5 | 47 ++++----- shallot-0.3.2/shallot/NAMESPACE | 1 shallot-0.3.2/shallot/NEWS | 7 + shallot-0.3.2/shallot/R/onLoad.R | 13 ++ shallot-0.3.2/shallot/R/shallot.R | 52 +++++----- shallot-0.3.2/shallot/inst/java/scala-2.10/shallot_2.10-0.3.2.jar |only shallot-0.3.2/shallot/inst/java/scala-2.11/shallot_2.11-0.3.2.jar |only shallot-0.3.2/shallot/inst/java/scala-2.12/shallot_2.12-0.3.2.jar |only shallot-0.3.2/shallot/java/README | 5 shallot-0.3.2/shallot/java/shallot-sources.jar |binary shallot-0.3.2/shallot/man/adj.rand.index.Rd | 1 shallot-0.3.2/shallot/man/attraction.Rd | 3 shallot-0.3.2/shallot/man/decay.Rd | 3 shallot-0.3.2/shallot/man/estimate.partition.Rd | 3 shallot-0.3.2/shallot/man/mass.Rd | 1 shallot-0.3.2/shallot/man/nsubsets.Rd | 5 shallot-0.3.2/shallot/man/pairwise.probabilities.Rd | 1 shallot-0.3.2/shallot/man/partition.distribution.Rd | 3 shallot-0.3.2/shallot/man/permutation.Rd | 3 shallot-0.3.2/shallot/man/plot.partition.Rd | 1 shallot-0.3.2/shallot/man/process.partition.Rd | 1 shallot-0.3.2/shallot/man/sample.partition.Rd | 1 shallot-0.3.2/shallot/man/shallot-package.Rd | 5 28 files changed, 83 insertions(+), 85 deletions(-)
Title: Bi-Directional Interface Between R and Scala with Callbacks
Description: The Scala <http://www.scala-lang.org/> interpreter is embedded in R and callbacks to R from the embedded interpreter are supported. Conversely, the R interpreter is embedded in Scala. Scala versions in the 2.10.x, 2.11.x, and 2.12.x series are supported.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between rscala versions 2.2.0 dated 2017-05-24 and 2.2.2 dated 2017-05-25
rscala-2.2.0/rscala/inst/java/scala-2.10/rscala_2.10-2.2.0.jar |only rscala-2.2.0/rscala/inst/java/scala-2.11/rscala_2.11-2.2.0.jar |only rscala-2.2.0/rscala/inst/java/scala-2.12/rscala_2.12-2.2.0.jar |only rscala-2.2.2/rscala/DESCRIPTION | 8 ++-- rscala-2.2.2/rscala/MD5 | 20 +++++----- rscala-2.2.2/rscala/NAMESPACE | 1 rscala-2.2.2/rscala/NEWS | 9 ++++ rscala-2.2.2/rscala/R/scala.R | 11 +++++ rscala-2.2.2/rscala/R/zzz.R | 7 --- rscala-2.2.2/rscala/inst/java/scala-2.10/rscala_2.10-2.2.2.jar |only rscala-2.2.2/rscala/inst/java/scala-2.11/rscala_2.11-2.2.2.jar |only rscala-2.2.2/rscala/inst/java/scala-2.12/rscala_2.12-2.2.2.jar |only rscala-2.2.2/rscala/java/rscala-sources.jar |binary rscala-2.2.2/rscala/man/constructor.Rd | 14 +++++-- 14 files changed, 45 insertions(+), 25 deletions(-)
Title: Integrating R with QGIS
Description: Establishes an interface between R and 'QGIS', i.e. it allows
the user to access 'QGIS' functionalities from the R console. It achieves this
by using the 'QGIS' Python API via the command line. Hence, RQGIS extends R's
statistical power by the incredible vast geo-functionality of 'QGIS' (including
also 'GDAL', 'SAGA'- and 'GRASS'-GIS among other third-party providers).
This in turn creates a powerful environment for advanced and innovative
(geo-)statistical geocomputing. 'QGIS' is licensed under GPL version 2 or
greater and is available from <http://www.qgis.org/en/site/>.
Author: Jannes Muenchow [aut, cre],
Patrick Schratz [aut]
Maintainer: Jannes Muenchow <jannes.muenchow@uni-jena.de>
Diff between RQGIS versions 0.2.0 dated 2017-01-18 and 1.0.0 dated 2017-05-25
RQGIS-0.2.0/RQGIS/man/build_cmds.Rd |only RQGIS-0.2.0/RQGIS/man/build_py.Rd |only RQGIS-0.2.0/RQGIS/man/execute_cmds.Rd |only RQGIS-0.2.0/RQGIS/man/get_args.Rd |only RQGIS-0.2.0/RQGIS/vignettes/00_express.PNG |only RQGIS-0.2.0/RQGIS/vignettes/01_initial_setup.PNG |only RQGIS-0.2.0/RQGIS/vignettes/04_select_packages.PNG |only RQGIS-0.2.0/RQGIS/vignettes/05_command_line_utilties.PNG |only RQGIS-0.2.0/RQGIS/vignettes/06_desktop_gis.PNG |only RQGIS-0.2.0/RQGIS/vignettes/08_suggestions.PNG |only RQGIS-1.0.0/RQGIS/DESCRIPTION | 27 RQGIS-1.0.0/RQGIS/MD5 | 85 RQGIS-1.0.0/RQGIS/NAMESPACE | 30 RQGIS-1.0.0/RQGIS/NEWS |only RQGIS-1.0.0/RQGIS/NEWS.md | 84 RQGIS-1.0.0/RQGIS/R/RQGIS.R |only RQGIS-1.0.0/RQGIS/R/data.R | 21 RQGIS-1.0.0/RQGIS/R/helper_funs.R | 681 +++++- RQGIS-1.0.0/RQGIS/R/init.R |only RQGIS-1.0.0/RQGIS/R/processing.R | 1471 +++++++-------- RQGIS-1.0.0/RQGIS/build/vignette.rds |binary RQGIS-1.0.0/RQGIS/inst/doc/install_guide.R | 2 RQGIS-1.0.0/RQGIS/inst/doc/install_guide.Rmd | 134 - RQGIS-1.0.0/RQGIS/inst/doc/install_guide.html | 201 +- RQGIS-1.0.0/RQGIS/inst/python |only RQGIS-1.0.0/RQGIS/inst/test-scripts |only RQGIS-1.0.0/RQGIS/inst/travis |only RQGIS-1.0.0/RQGIS/man/RQGIS-package.Rd |only RQGIS-1.0.0/RQGIS/man/check_apps.Rd | 13 RQGIS-1.0.0/RQGIS/man/check_for_server.Rd |only RQGIS-1.0.0/RQGIS/man/dem.Rd | 20 RQGIS-1.0.0/RQGIS/man/find_algorithms.Rd | 36 RQGIS-1.0.0/RQGIS/man/get_args_man.Rd | 45 RQGIS-1.0.0/RQGIS/man/get_grp.Rd |only RQGIS-1.0.0/RQGIS/man/get_options.Rd | 24 RQGIS-1.0.0/RQGIS/man/get_usage.Rd | 19 RQGIS-1.0.0/RQGIS/man/ndvi.Rd | 22 RQGIS-1.0.0/RQGIS/man/open_app.Rd |only RQGIS-1.0.0/RQGIS/man/open_grass_help.Rd | 10 RQGIS-1.0.0/RQGIS/man/open_help.Rd | 27 RQGIS-1.0.0/RQGIS/man/pass_args.Rd |only RQGIS-1.0.0/RQGIS/man/qgis_session_info.Rd | 29 RQGIS-1.0.0/RQGIS/man/random_points.Rd | 28 RQGIS-1.0.0/RQGIS/man/reset_path.Rd |only RQGIS-1.0.0/RQGIS/man/run_ini.Rd |only RQGIS-1.0.0/RQGIS/man/run_qgis.Rd | 125 - RQGIS-1.0.0/RQGIS/man/save_spatial_objects.Rd |only RQGIS-1.0.0/RQGIS/man/set_env.Rd | 32 RQGIS-1.0.0/RQGIS/man/setup_linux.Rd |only RQGIS-1.0.0/RQGIS/man/setup_mac.Rd |only RQGIS-1.0.0/RQGIS/man/setup_win.Rd |only RQGIS-1.0.0/RQGIS/tests/testthat/test-get-options.R |only RQGIS-1.0.0/RQGIS/tests/testthat/test-get-usage.R |only RQGIS-1.0.0/RQGIS/tests/testthat/test-pass_args.R |only RQGIS-1.0.0/RQGIS/tests/testthat/test-qgis-prerun.R |only RQGIS-1.0.0/RQGIS/tests/testthat/test-run-qgis.R | 128 - RQGIS-1.0.0/RQGIS/vignettes/install_guide.Rmd | 134 - 57 files changed, 1965 insertions(+), 1463 deletions(-)
Title: Access to Facebook API via R
Description: Provides an interface to the Facebook API.
Author: Pablo Barbera <pbarbera@usc.edu>, Michael Piccirilli
<mrp2181@columbia.edu>, Andrew Geisler, Wouter van Atteveldt
Maintainer: Pablo Barbera <pbarbera@usc.edu>
Diff between Rfacebook versions 0.6.11 dated 2017-01-04 and 0.6.15 dated 2017-05-25
ChangeLog | 11 ++++++ DESCRIPTION | 10 ++--- MD5 | 52 ++++++++++++++++------------- NAMESPACE | 2 + R/fbOAuth.R | 30 +++++++++-------- R/getCheckins.R | 8 ++-- R/getCommentReplies.R | 14 ++++---- R/getEvents.R |only R/getGroup.R | 20 ++++++----- R/getInsights.R | 2 + R/getPage.R | 19 +++++++--- R/getPageToken.R |only R/getPost.R | 82 +++++++++++++++++++++++++++++++++++++---------- R/getReactions.R | 8 ++-- R/searchPages.R | 3 + R/utils.R | 43 +++++++++++++++++++++++- man/callAPI.Rd | 4 +- man/fbOAuth.Rd | 4 +- man/getCheckins.Rd | 4 +- man/getCommentReplies.Rd | 4 +- man/getEvents.Rd |only man/getGroup.Rd | 4 +- man/getInsights.Rd | 2 + man/getPage.Rd | 13 +++++-- man/getPageToken.Rd |only man/getPost.Rd | 34 +++++++++++++------ man/getReactions.Rd | 4 +- man/searchGroup.Rd | 4 +- man/searchPages.Rd | 3 + 29 files changed, 273 insertions(+), 111 deletions(-)
Title: Construct Complex Table with 'kable' and Pipe Syntax
Description: A collection of functions to help build complex HTML or 'LaTeX'
tables using 'kable()' from 'knitr' and the piping syntax from 'magrittr'.
Function 'kable()' is a light weight table generator coming from 'knitr'.
This package simplifies the way to manipulate the HTML or 'LaTeX' codes
generated by 'kable()' and allows users to construct complex tables
and customize styles using a readable syntax.
Author: Hao Zhu [aut, cre],
Will Beasley [ctb],
Yihui Xie [ctb],
Thomas Travison [ctb],
GuangChuang Yu [ctb]
Maintainer: Hao Zhu <haozhu233@gmail.com>
Diff between kableExtra versions 0.2.0 dated 2017-05-23 and 0.2.1 dated 2017-05-25
DESCRIPTION | 6 +- MD5 | 60 +++++++++++---------- NAMESPACE | 1 R/add_footnote.R | 6 +- R/add_header_above.R | 13 +++- R/add_indent.R | 4 + R/column_spec.R |only R/group_rows.R | 10 +-- R/kable_styling.R | 14 ++--- R/landscape.R | 2 R/magic_mirror.R | 13 ++++ R/util.R | 2 README.md | 1 inst/NEWS | 9 +++ inst/doc/awesome_table_in_html.R | 21 ++++++- inst/doc/awesome_table_in_html.Rmd | 30 +++++++++- inst/doc/awesome_table_in_html.html | 83 ++++++++++++++++++++++++------ inst/doc/use_kable_in_shiny.Rmd | 4 - inst/doc/use_kable_in_shiny.html | 4 - man/add_footnote.Rd | 8 ++ man/add_header_above.Rd | 7 ++ man/add_indent.Rd | 6 ++ man/column_spec.Rd |only man/group_rows.Rd | 6 ++ man/kable_styling.Rd | 8 ++ man/landscape.Rd | 4 + man/magic_mirror.Rd | 3 + man/usepackage_latex.Rd | 3 + tests/visual_tests/column_width_html.Rmd |only tests/visual_tests/column_width_html.html |only tests/visual_tests/column_width_pdf.Rmd |only tests/visual_tests/column_width_pdf.pdf |only vignettes/awesome_table_in_html.Rmd | 30 +++++++++- vignettes/use_kable_in_shiny.Rmd | 4 - 34 files changed, 281 insertions(+), 81 deletions(-)
Title: Generalised Additive Models for Location Scale and Shape
Description: Functions for fitting Generalized Additive Models for Location Scale and Shape.
Author: Mikis Stasinopoulos [aut, cre, cph],
Bob Rigby [aut],
Vlasios Voudouris [ctb],
Calliope Akantziliotou [ctb],
Marco Enea [ctb],
Daniil Kiose [ctb]
Maintainer: Mikis Stasinopoulos <mikis.stasinopoulos@gamlss.org>
Diff between gamlss versions 5.0-1 dated 2016-11-21 and 5.0-2 dated 2017-05-25
gamlss-5.0-1/gamlss/R/gamlssML-31-10-13.R |only gamlss-5.0-2/gamlss/DESCRIPTION | 10 - gamlss-5.0-2/gamlss/MD5 | 157 +++++++++++++------------- gamlss-5.0-2/gamlss/NAMESPACE | 31 ++--- gamlss-5.0-2/gamlss/R/extra.R | 3 gamlss-5.0-2/gamlss/R/fitDist-17-05-13.R | 29 ++-- gamlss-5.0-2/gamlss/R/gamlss.R | 13 -- gamlss-5.0-2/gamlss/R/gamlssML.R |only gamlss-5.0-2/gamlss/R/lms.R | 4 gamlss-5.0-2/gamlss/R/predictAll.R | 4 gamlss-5.0-2/gamlss/R/pvc.R | 30 ++++ gamlss-5.0-2/gamlss/R/ri.R | 25 ++-- gamlss-5.0-2/gamlss/inst/doc/NEWS.txt | 37 +++++- gamlss-5.0-2/gamlss/man/IC.Rd | 6 gamlss-5.0-2/gamlss/man/LR.test.Rd | 6 gamlss-5.0-2/gamlss/man/Q.stats.Rd | 7 - gamlss-5.0-2/gamlss/man/Rsq.Rd | 4 gamlss-5.0-2/gamlss/man/VC.test.Rd | 1 gamlss-5.0-2/gamlss/man/additive.fit.Rd | 99 ++++++++-------- gamlss-5.0-2/gamlss/man/bfp.Rd | 7 - gamlss-5.0-2/gamlss/man/calibration.Rd | 7 - gamlss-5.0-2/gamlss/man/centiles.Rd | 7 - gamlss-5.0-2/gamlss/man/centiles.com.Rd | 124 ++++++++++---------- gamlss-5.0-2/gamlss/man/centiles.pred.Rd | 7 - gamlss-5.0-2/gamlss/man/centiles.split.Rd | 133 +++++++++++----------- gamlss-5.0-2/gamlss/man/coef.gamlss.Rd | 7 - gamlss-5.0-2/gamlss/man/cs.Rd | 8 - gamlss-5.0-2/gamlss/man/deviance.gamlss.Rd | 8 - gamlss-5.0-2/gamlss/man/dtop.Rd | 5 gamlss-5.0-2/gamlss/man/edf.Rd | 7 - gamlss-5.0-2/gamlss/man/findhyper.Rd | 7 - gamlss-5.0-2/gamlss/man/fitDist.Rd | 16 +- gamlss-5.0-2/gamlss/man/fitted.gamlss.Rd | 7 - gamlss-5.0-2/gamlss/man/fittedPlot.Rd | 90 +++++++------- gamlss-5.0-2/gamlss/man/formula.gamlss.Rd | 8 - gamlss-5.0-2/gamlss/man/gamlss.Rd | 8 - gamlss-5.0-2/gamlss/man/gamlss.control.Rd | 8 - gamlss-5.0-2/gamlss/man/gamlss.fp.Rd | 97 ++++++++-------- gamlss-5.0-2/gamlss/man/gamlss.package.Rd | 151 ++++++++++++------------- gamlss-5.0-2/gamlss/man/gamlss.ps.Rd | 6 gamlss-5.0-2/gamlss/man/gamlss.random.Rd | 6 gamlss-5.0-2/gamlss/man/gamlss.scope.Rd | 118 +++++++++---------- gamlss-5.0-2/gamlss/man/gamlssML.Rd | 21 +-- gamlss-5.0-2/gamlss/man/gamlssVGD.Rd | 6 gamlss-5.0-2/gamlss/man/gen.likelihood.Rd | 5 gamlss-5.0-2/gamlss/man/getPEF.Rd | 6 gamlss-5.0-2/gamlss/man/getSmo.Rd | 8 - gamlss-5.0-2/gamlss/man/glim.control.Rd | 99 ++++++++-------- gamlss-5.0-2/gamlss/man/histDist.Rd | 7 - gamlss-5.0-2/gamlss/man/histSmo.Rd | 3 gamlss-5.0-2/gamlss/man/lms.Rd | 6 gamlss-5.0-2/gamlss/man/lo.Rd | 7 - gamlss-5.0-2/gamlss/man/loglogSurv.Rd | 6 gamlss-5.0-2/gamlss/man/lpred.Rd | 8 - gamlss-5.0-2/gamlss/man/model.frame.gamlss.Rd | 7 - gamlss-5.0-2/gamlss/man/par.plot.Rd | 7 - gamlss-5.0-2/gamlss/man/pcat.Rd | 3 gamlss-5.0-2/gamlss/man/pdf.plot.Rd | 137 +++++++++++----------- gamlss-5.0-2/gamlss/man/plot.gamlss.Rd | 127 ++++++++++----------- gamlss-5.0-2/gamlss/man/plot.histSmo.Rd | 5 gamlss-5.0-2/gamlss/man/plot2way.Rd | 7 - gamlss-5.0-2/gamlss/man/polyS.Rd | 82 ++++++------- gamlss-5.0-2/gamlss/man/predict.gamlss.Rd | 7 - gamlss-5.0-2/gamlss/man/print.gamlss.Rd | 77 ++++++------ gamlss-5.0-2/gamlss/man/prof.dev.Rd | 7 - gamlss-5.0-2/gamlss/man/prof.term.Rd | 6 gamlss-5.0-2/gamlss/man/ps.Rd | 8 - gamlss-5.0-2/gamlss/man/quantSheets.Rd | 4 gamlss-5.0-2/gamlss/man/random.Rd | 5 gamlss-5.0-2/gamlss/man/refit.Rd | 87 +++++++------- gamlss-5.0-2/gamlss/man/residuals.gamlss.Rd | 115 +++++++++---------- gamlss-5.0-2/gamlss/man/ri.Rd | 7 - gamlss-5.0-2/gamlss/man/rqres.plot.Rd | 5 gamlss-5.0-2/gamlss/man/rvcov.Rd | 7 - gamlss-5.0-2/gamlss/man/stepGAIC.Rd | 5 gamlss-5.0-2/gamlss/man/summary.gamlss.Rd | 6 gamlss-5.0-2/gamlss/man/term.plot.Rd | 7 - gamlss-5.0-2/gamlss/man/update.gamlss.Rd | 7 - gamlss-5.0-2/gamlss/man/wp.Rd | 6 gamlss-5.0-2/gamlss/man/z.scores.Rd | 8 - gamlss-5.0-2/gamlss/src/gamlss_init.c |only 81 files changed, 1196 insertions(+), 1043 deletions(-)
Title: Protein Secondary Structure Prediction Using the Bamboo Method
Description: Implementation of the Bamboo methods described in Li, Dahl, Vannucci, Joo, and Tsai (2014) <DOI:10.1371/journal.pone.0109832>.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between bamboo versions 0.9.17 dated 2017-05-15 and 0.9.18 dated 2017-05-25
bamboo-0.9.17/bamboo/inst/java/scala-2.10/bamboo_2.10-0.9.17.jar |only bamboo-0.9.17/bamboo/inst/java/scala-2.11/bamboo_2.11-0.9.17.jar |only bamboo-0.9.17/bamboo/inst/java/scala-2.12/bamboo_2.12-0.9.17.jar |only bamboo-0.9.18/bamboo/DESCRIPTION | 10 +-- bamboo-0.9.18/bamboo/MD5 | 16 +++--- bamboo-0.9.18/bamboo/R/bamboo.R | 26 +++++----- bamboo-0.9.18/bamboo/R/onLoad.R | 6 +- bamboo-0.9.18/bamboo/inst/java/scala-2.10/bamboo_2.10-0.9.18.jar |only bamboo-0.9.18/bamboo/inst/java/scala-2.11/bamboo_2.11-0.9.18.jar |only bamboo-0.9.18/bamboo/inst/java/scala-2.12/bamboo_2.12-0.9.18.jar |only bamboo-0.9.18/bamboo/java/bamboo-sources.jar |binary bamboo-0.9.18/bamboo/man/bamboo.Rd | 2 12 files changed, 31 insertions(+), 29 deletions(-)