Title: SODA: Main and Interaction Effects Selection for Logistic
Regression, Quadratic Discriminant and General Index Models
Description: Variable and interaction selection are essential to classification in high-dimensional setting. In this package, we provide the implementation of SODA procedure, which is a forward-backward algorithm that selects both main and interaction effects under logistic regression and quadratic discriminant analysis. We also provide an extension, S-SODA, for dealing with the variable selection problem for semi-parametric models with continuous responses.
Author: Yang Li, Jun S. Liu
Maintainer: Yang Li <yangli.stat@gmail.com>
Diff between sodavis versions 0.1 dated 2015-11-16 and 1.0 dated 2017-05-29
DESCRIPTION | 18 - MD5 | 16 - NAMESPACE | 9 R/pure_soda.R | 556 +++++++++++++++++++++++++++++++++++------------- data/datalist | 1 data/pumadyn.RData |only man/pumadyn.Rd |only man/s_soda.Rd |only man/s_soda_model.Rd |only man/s_soda_pred.Rd |only man/s_soda_pred_grid.Rd |only man/soda.Rd | 46 ++- 12 files changed, 462 insertions(+), 184 deletions(-)
Title: Robust Variance Meta-Regression
Description: Functions for conducting robust variance estimation (RVE) meta-regression using both large and small sample RVE estimators under various weighting schemes. These methods are distribution free and provide valid point estimates, standard errors and hypothesis tests even when the degree and structure of dependence between effect sizes is unknown. Also included are functions for conducting sensitivity analyses under correlated effects weighting and producing RVE-based forest plots.
Author: Zachary Fisher [aut, cre],
Elizabeth Tipton [aut],
Hou Zhipeng [aut]
Maintainer: Zachary Fisher <fish.zachary@gmail.com>
Diff between robumeta versions 1.8 dated 2016-11-04 and 2.0 dated 2017-05-29
DESCRIPTION | 25 +++- MD5 | 50 +++++--- NAMESPACE | 16 +- R/forest.robu.R | 175 ++++++++++++++++++++--------- R/group.center.R | 23 +++ R/group.mean.R | 23 +++ R/predict.robu.R |only R/print.robu.R | 41 ++++++ R/robu.R | 299 ++++++++++++++++++++++++++++++++++---------------- R/robumeta-data.R |only R/sensitivity.R | 41 +++++- build |only inst |only man/corrdat.Rd | 24 ++-- man/corrdat.sm.Rd | 20 +-- man/forest.robu.Rd | 97 +++++++++------- man/group.center.Rd | 28 ++-- man/group.mean.Rd | 28 ++-- man/hedgesdat.Rd | 37 +++--- man/hierdat.Rd | 24 ++-- man/oswald2013.Rd | 52 ++++---- man/oswald2013.ex1.Rd | 56 ++++----- man/predict.robu.Rd |only man/print.robu.Rd | 44 +++---- man/robu.Rd | 203 ++++++++++++++------------------- man/sensitivity.Rd | 43 +++---- tests |only vignettes |only 28 files changed, 826 insertions(+), 523 deletions(-)
Title: R Interface to Google Fit API
Description: Provides interface to Google Fit REST API v1 (see <https://developers.google.com/fit/rest/v1/reference/>).
Author: Marcin Szymanski
Maintainer: Marcin Szymanski <ms32035@gmail.com>
Diff between RGoogleFit versions 0.3.0 dated 2017-05-24 and 0.3.1 dated 2017-05-29
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 5 +++++ R/GetFitOAuth2Token.R | 3 +-- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Fitting, Diagnostics, and Plotting Functions for Infinite
Mixtures of Infinite Factor Analysers and Related Models
Description: Provides flexible Bayesian estimation of Infinite Mixtures of Infinite Factor Analysers and related models, for nonparametrically clustering high-dimensional data, introduced by Murphy et al. (2017) <arXiv:1701.07010>. The IMIFA model conducts Bayesian nonparametric model-based clustering with factor analytic covariance structures without recourse to model selection criteria to choose the number of clusters or cluster-specific latent factors, mostly via efficient Gibbs updates. Model-specific diagnostic tools are also provided, as well as many options for plotting results and conducting posterior inference on parameters of interest.
Author: Keefe Murphy [aut, cre],
Isobel Claire Gormley [ctb],
Cinzia Viroli [ctb]
Maintainer: Keefe Murphy <keefe.murphy@ucd.ie>
Diff between IMIFA versions 1.2.0 dated 2017-05-09 and 1.2.1 dated 2017-05-29
DESCRIPTION | 15 MD5 | 73 +- NAMESPACE | 8 NEWS.md |only R/Diagnostics.R | 12 R/FullConditionals.R | 138 ++++- R/Gibbs_IMFA.R | 6 R/Gibbs_IMIFA.R | 6 R/Gibbs_MFA.R | 6 R/Gibbs_MIFA.R | 6 R/Gibbs_OMFA.R | 6 R/Gibbs_OMIFA.R | 6 R/IMIFA.R | 10 R/MainFunction.R | 23 R/PlottingFunctions.R | 322 ++++++++---- R/SimulateData.R | 15 README.md | 2 inst/doc/IMIFA.R | 2 inst/doc/IMIFA.Rmd | 6 inst/doc/IMIFA.html | 16 man/G_expected.Rd | 3 man/G_priorDensity.Rd | 11 man/G_variance.Rd | 3 man/IMIFA.Rd | 8 man/MGP_check.Rd | 3 man/PGMM_dfree.Rd | 3 man/Zsimilarity.Rd | 3 man/get_IMIFA_results.Rd | 5 man/gumbel_max.Rd | 5 man/heat_legend.Rd | 4 man/is.posi_def.Rd |only man/mat2cols.Rd | 41 + man/mcmc_IMIFA.Rd | 17 man/plot.Results_IMIFA.Rd | 19 man/plot_cols.Rd |only man/psi_hyper.Rd | 3 man/sim_IMIFA_data.Rd | 9 vignettes/IMIFA.Rmd | 6 vignettes/res_olive_IMIFA__Edited-Vignette-only-Version.rda |binary 39 files changed, 562 insertions(+), 259 deletions(-)
Title: A Generalization of the Dirichlet Distribution
Description: A suite of routines for the hyperdirichlet distribution.
Author: Robin K.S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between hyperdirichlet versions 1.5-0 dated 2017-04-18 and 1.5-1 dated 2017-05-29
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- R/hyperdirichlet.R | 12 ++++++------ build/vignette.rds |binary data/doubles.rda |binary data/paulino.rda |binary data/pollen.rda |binary data/serum.rda |binary data/volleyball.rda |binary inst/doc/correspondence.pdf |binary inst/doc/hyperdirichlet.pdf |binary man/print.Rd | 10 ++++++---- 12 files changed, 28 insertions(+), 26 deletions(-)
More information about hyperdirichlet at CRAN
Permanent link
Title: Methods for Joint Dimension Reduction and Clustering
Description: A class of methods that combine dimension reduction and clustering of continuous or categorical data. For continuous data, the package contains implementations of factorial K-means (Vichi and Kiers 2001; <DOI:10.1016/S0167-9473(00)00064-5>) and reduced K-means (De Soete and Carroll 1994; <DOI:10.1007/978-3-642-51175-2_24>); both methods that combine principal component analysis with K-means clustering. For categorical data, the package provides MCA K-means (Hwang, Dillon and Takane 2006; <DOI:10.1007/s11336-004-1173-x>), i-FCB (Iodice D'Enza and Palumbo 2013, <DOI:10.1007/s00180-012-0329-x>) and Cluster Correspondence Analysis (van de Velden, Iodice D'Enza and Palumbo 2017; <DOI:10.1007/s11336-016-9514-0>), which combine multiple correspondence analysis with K-means.
Author: Angelos Markos [aut, cre], Alfonso Iodice D'Enza [aut], Michel van de Velden [ctb]
Maintainer: Angelos Markos <amarkos@gmail.com>
Diff between clustrd versions 1.1.9 dated 2017-04-25 and 1.2.0 dated 2017-05-29
clustrd-1.1.9/clustrd/R/print.clusval.R |only clustrd-1.1.9/clustrd/R/print.tune_clusmca.R |only clustrd-1.1.9/clustrd/R/print.tune_cluspca.R |only clustrd-1.1.9/clustrd/R/summary.tune_clusmca.R |only clustrd-1.1.9/clustrd/R/summary.tune_cluspca.R |only clustrd-1.1.9/clustrd/man/clusval.Rd |only clustrd-1.2.0/clustrd/DESCRIPTION | 12 clustrd-1.2.0/clustrd/MD5 | 68 ++-- clustrd-1.2.0/clustrd/NAMESPACE | 14 clustrd-1.2.0/clustrd/R/EmptyKmeans.r | 18 - clustrd-1.2.0/clustrd/R/MCAk.r | 355 +++++++++++++------------ clustrd-1.2.0/clustrd/R/clusCA.R | 116 ++------ clustrd-1.2.0/clustrd/R/clusmca.R | 68 +++- clustrd-1.2.0/clustrd/R/cluspca.R | 285 +++++++++++--------- clustrd-1.2.0/clustrd/R/clusval.R | 12 clustrd-1.2.0/clustrd/R/fitted.clusmca.R |only clustrd-1.2.0/clustrd/R/fitted.cluspca.R |only clustrd-1.2.0/clustrd/R/fitted.tuneclus.R |only clustrd-1.2.0/clustrd/R/iFCB.r | 27 - clustrd-1.2.0/clustrd/R/outOfIndependence.r | 14 clustrd-1.2.0/clustrd/R/plot.clusmca.R | 80 +++-- clustrd-1.2.0/clustrd/R/plot.cluspca.R | 79 +++-- clustrd-1.2.0/clustrd/R/plot.tuneclus.R |only clustrd-1.2.0/clustrd/R/print.clusmca.R | 120 ++++++-- clustrd-1.2.0/clustrd/R/print.cluspca.R | 129 ++++++--- clustrd-1.2.0/clustrd/R/print.tuneclus.R |only clustrd-1.2.0/clustrd/R/summary.clusmca.R | 106 +++++-- clustrd-1.2.0/clustrd/R/summary.cluspca.R | 132 ++++++--- clustrd-1.2.0/clustrd/R/summary.tuneclus.R |only clustrd-1.2.0/clustrd/R/tune_clusmca.R | 15 - clustrd-1.2.0/clustrd/R/tune_cluspca.R | 7 clustrd-1.2.0/clustrd/R/tuneclus.R | 9 clustrd-1.2.0/clustrd/man/clusmca.Rd | 47 ++- clustrd-1.2.0/clustrd/man/cluspca.Rd | 49 ++- clustrd-1.2.0/clustrd/man/cmc.Rd | 10 clustrd-1.2.0/clustrd/man/hsq.Rd | 2 clustrd-1.2.0/clustrd/man/macro.Rd | 4 clustrd-1.2.0/clustrd/man/plot.clusmca.Rd | 14 clustrd-1.2.0/clustrd/man/plot.cluspca.Rd | 13 clustrd-1.2.0/clustrd/man/tuneclus.Rd | 40 ++ clustrd-1.2.0/clustrd/man/underwear.Rd | 8 41 files changed, 1122 insertions(+), 731 deletions(-)
Title: Geometric Shadow Calculations
Description: Functions for calculating (1) shadow heights; (2) shadow footprint on ground polygons; and (3) Sky View Factor values. Inputs include a polygonal layer of obstacle outlines along with their heights, sun azimuth and sun elevation. The package also provides functions for related preliminary calculations: breaking polygons into line segments, finding segment azimuth, shifting segments by azimuth and distance, and constructing the footprint of a line of sight between an observer and the sun.
Author: Michael Dorman [aut, cre],
Evyatar Erell [ctb],
Itai Kloog [ctb],
Adi Vulkan [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between shadow versions 0.3.0 dated 2017-03-31 and 0.3.2 dated 2017-05-29
DESCRIPTION | 11 ++--- MD5 | 50 +++++++++++------------ R/SVF.R | 94 +++++++++++++++++++++++++++++++++++++-------- R/shadowHeight.R | 91 ++++++++++++++++++++++++++++++++++++++----- R/shiftAz.R | 17 +++++--- R/toSeg.R | 16 +++++-- build/vignette.rds |binary inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 12 ++--- man/SVF.Rd | 16 ++++--- man/block.Rd | 1 man/build.Rd | 1 man/classifyAz.Rd | 1 man/deg2rad.Rd | 1 man/park.Rd | 1 man/rad2deg.Rd | 1 man/ray.Rd | 1 man/rishon.Rd | 1 man/shadow.Rd | 1 man/shadowFootprint.Rd | 1 man/shadowHeight.Rd | 17 ++++---- man/shiftAz.Rd | 11 ++--- man/sidewalk.Rd | 1 man/toGMT.Rd | 1 man/toSeg.Rd | 6 ++ vignettes/introduction.Rmd | 2 26 files changed, 250 insertions(+), 107 deletions(-)
Title: R Interface to the 'LTP'-Cloud Service
Description: R interface to the 'LTP'-Cloud service for Natural Language Processing
in Chinese (http://www.ltp-cloud.com/).
Author: Tong He [aut, cre], Oliver Keyes [ctb]
Maintainer: Tong He <hetong007@gmail.com>
Diff between rLTP versions 0.1.3 dated 2017-05-16 and 0.1.4 dated 2017-05-29
DESCRIPTION | 9 +++++---- MD5 | 24 ++++++++++++------------ NAMESPACE | 4 ++-- R/encoding_check.R | 10 ++++++++++ R/ltp.R | 2 ++ man/isBIG5.Rd | 3 +-- man/isGB18030.Rd | 3 +-- man/isGB2312.Rd | 3 +-- man/isGBK.Rd | 3 +-- man/isUTF8.Rd | 3 +-- man/ltp.Rd | 12 +++++++----- man/rLTP.Rd | 3 +-- man/toUTF8.Rd | 3 +-- 13 files changed, 45 insertions(+), 37 deletions(-)
Title: Performs Bayesian Variable Selection on the Covariates in a
Semi-Competing Risks Model
Description: Contains four functions used in the DIC-tau_g procedure. SCRSELECT() and SCRSELECTRUN() uses Stochastic Search Variable Selection to select important
covariates in the three hazard functions of a semi-competing risks model. These functions perform the Gibbs sampler for variable selection and a Metropolis-Hastings-Green sampler for the number of split points and parameters for the
three baseline hazard function. The function SCRSELECT() returns the posterior sample of all quantities sampled in the Gibbs sampler after a burn-in period to a desired
file location, while the function SCRSELECTRUN() returns posterior values of important quantities to the DIC-Tau_g procedure in a list.
The function DICTAUG() returns a list containing the DIC values for the unique models visited by the DIC-Tau_g grid search.
The function ReturnModel() uses SCRSELECTRUN() and DICTAUG() to return a summary of the posterior coefficient vectors for the optimal model along with saving this posterior sample to a desired path location.
Author: Andrew Chapple [aut, cre]
Maintainer: Andrew Chapple <Andrew.G.Chapple@rice.edu>
Diff between SCRSELECT versions 1.1-2 dated 2017-04-10 and 1.1-3 dated 2017-05-29
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/ReturnModel.R | 9 +-------- 3 files changed, 6 insertions(+), 13 deletions(-)
Title: Power Analysis Tool for Joint Testing Hazards with Competing
Risks Data
Description: A power analysis tool for jointly testing the cause-1 cause-specific hazard and the any-cause hazard with competing risks data.
Author: Qing Yang[aut], Wing K. Fung[aut], Eric Kawaguchi[ctb], Gang Li[aut, cre]
Maintainer: Eric Kawaguchi <erickawaguchi@ucla.edu>
Diff between powerCompRisk versions 0.1.0 dated 2017-05-12 and 0.1.1 dated 2017-05-29
DESCRIPTION | 6 +++--- MD5 | 4 ++-- man/power_comp_risk.Rd | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Simple Phrase Extraction
Description: Simple noun phrase extraction using part-of-speech information.
Takes a collection of un-processed documents as input and returns a set of noun
phrases associated with those documents.
Author: Matthew J. Denny, Abram Handler, Brendan O'Connor
Maintainer: Matthew J. Denny <mdenny@psu.edu>
Diff between phrasemachine versions 1.1.1 dated 2017-05-27 and 1.1.2 dated 2017-05-29
DESCRIPTION | 12 ++++++------ MD5 | 20 ++++++++++---------- R/POS_tag_documents.R | 4 +++- R/extract_phrases.R | 3 ++- R/zzz.R | 2 +- inst/doc/getting_started_with_phrasemachine.html | 6 +++--- man/POS_tag_documents.Rd | 4 +++- man/extract_phrases.Rd | 3 ++- tests/testthat/test_POS_tag_documents.R | 8 +++++--- tests/testthat/test_extract_ngram_filter.R | 2 +- tests/testthat/test_extract_phrases.R | 8 +++++--- 11 files changed, 41 insertions(+), 31 deletions(-)
Title: Time Series Analysis and Computational Finance
Description: Time series analysis and computational finance.
Author: Adrian Trapletti [aut],
Kurt Hornik [aut, cre],
Blake LeBaron [ctb] (BDS test code)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tseries versions 0.10-40 dated 2017-04-19 and 0.10-41 dated 2017-05-29
ChangeLog | 15 ++- DESCRIPTION | 8 - MD5 | 16 +-- NAMESPACE | 1 R/finance.R | 226 +++++++++----------------------------------------- man/bev.Rd | 2 man/camp.Rd | 2 man/get.hist.quote.Rd | 22 ++-- man/ice.river.Rd | 2 9 files changed, 81 insertions(+), 213 deletions(-)
Title: Functions for University of Auckland Course STATS 201/208 Data
Analysis
Description: A set of functions used in teaching STATS 201/208 Data Analysis at
the University of Auckland. The functions are designed to make parts of R more
accessible to a large undergraduate population who are mostly not statistics
majors.
Author: Andrew Balemi, Dineika Chandra, James Curran, Brant Deppa, Mike Forster,
Brendan McArdle, Ben Stevenson, Chris Wild
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between s20x versions 3.1-19 dated 2017-01-25 and 3.1-22 dated 2017-05-29
s20x-3.1-19/s20x/data/airpass.df.txt.gz |only s20x-3.1-19/s20x/data/apples.df.txt.gz |only s20x-3.1-19/s20x/data/arousal.df.txt.gz |only s20x-3.1-19/s20x/data/beer.df.txt.gz |only s20x-3.1-19/s20x/data/body.df.txt.gz |only s20x-3.1-19/s20x/data/books.df.txt.gz |only s20x-3.1-19/s20x/data/bursary.df.txt.gz |only s20x-3.1-19/s20x/data/butterfat.df.txt.gz |only s20x-3.1-19/s20x/data/camplake.df.txt.gz |only s20x-3.1-19/s20x/data/chalk.df.txt.gz |only s20x-3.1-19/s20x/data/computer.df.txt.gz |only s20x-3.1-19/s20x/data/course.df.txt.gz |only s20x-3.1-19/s20x/data/course2way.df.txt.gz |only s20x-3.1-19/s20x/data/diamonds.df.txt.gz |only s20x-3.1-19/s20x/data/fire.df.txt.gz |only s20x-3.1-19/s20x/data/fruitfly.df.txt.gz |only s20x-3.1-19/s20x/data/house.df.txt.gz |only s20x-3.1-19/s20x/data/incomes.df.txt.gz |only s20x-3.1-19/s20x/data/lakemary.df.txt.gz |only s20x-3.1-19/s20x/data/larain.df.txt.gz |only s20x-3.1-19/s20x/data/mazda.df.txt.gz |only s20x-3.1-19/s20x/data/mening.df.txt.gz |only s20x-3.1-19/s20x/data/mergers.df.txt.gz |only s20x-3.1-19/s20x/data/mozart.df.txt.gz |only s20x-3.1-19/s20x/data/nail.df.txt.gz |only s20x-3.1-19/s20x/data/oysters.df.txt.gz |only s20x-3.1-19/s20x/data/peru.df.txt.gz |only s20x-3.1-19/s20x/data/rain.df.txt.gz |only s20x-3.1-19/s20x/data/seeds.df.txt.gz |only s20x-3.1-19/s20x/data/sheep.df.txt.gz |only s20x-3.1-19/s20x/data/skulls.df.txt.gz |only s20x-3.1-19/s20x/data/soyabean.df.txt.gz |only s20x-3.1-19/s20x/data/teach.df.txt.gz |only s20x-3.1-19/s20x/data/technitron.df.txt.gz |only s20x-3.1-19/s20x/data/thyroid.df.txt.gz |only s20x-3.1-19/s20x/data/toothpaste.df.txt.gz |only s20x-3.1-19/s20x/data/zoo.df.txt.gz |only s20x-3.1-19/s20x/man/autocor.plot.Rd |only s20x-3.1-22/s20x/DESCRIPTION | 18 - s20x-3.1-22/s20x/MD5 | 275 ++++++++-------- s20x-3.1-22/s20x/NAMESPACE | 50 +- s20x-3.1-22/s20x/R/autocor.plot.R | 40 +- s20x-3.1-22/s20x/R/boxqq.r | 114 ++++-- s20x-3.1-22/s20x/R/ciReg.R | 39 +- s20x-3.1-22/s20x/R/cooks20x.R | 29 + s20x-3.1-22/s20x/R/crossFactors.R | 79 +++- s20x-3.1-22/s20x/R/crosstabs.R | 119 ++++-- s20x-3.1-22/s20x/R/eovcheck.R | 230 ++++++++----- s20x-3.1-22/s20x/R/estimateContrasts.R | 47 ++ s20x-3.1-22/s20x/R/estimateContrasts1.R | 66 +-- s20x-3.1-22/s20x/R/estimateContrasts2.R | 79 ++-- s20x-3.1-22/s20x/R/freq1way.r | 234 +++++++------ s20x-3.1-22/s20x/R/getVersion.R | 17 s20x-3.1-22/s20x/R/interactionPlots.R | 327 ++++++++++--------- s20x-3.1-22/s20x/R/layout20x.R | 24 + s20x-3.1-22/s20x/R/levene.test.R | 108 +++--- s20x-3.1-22/s20x/R/multipleComp.R | 56 ++- s20x-3.1-22/s20x/R/normcheck.R | 163 +++++---- s20x-3.1-22/s20x/R/onewayPlot.R | 403 ++++++++++++----------- s20x-3.1-22/s20x/R/pairs20x.R | 70 ++-- s20x-3.1-22/s20x/R/predict20x.R | 104 ++++-- s20x-3.1-22/s20x/R/predictCount.R | 91 +++-- s20x-3.1-22/s20x/R/propslsd.new.R | 108 +++--- s20x-3.1-22/s20x/R/residPlot.R | 83 ++-- s20x-3.1-22/s20x/R/rowdistr.r | 440 +++++++++++++------------ s20x-3.1-22/s20x/R/rr.r | 14 s20x-3.1-22/s20x/R/s20x-package.R |only s20x-3.1-22/s20x/R/skewness.r | 20 + s20x-3.1-22/s20x/R/src-package.R |only s20x-3.1-22/s20x/R/stripqq.r | 108 +++--- s20x-3.1-22/s20x/R/summary1way.R | 74 +++- s20x-3.1-22/s20x/R/summary2way.R | 495 ++++++++++++++++------------- s20x-3.1-22/s20x/R/summaryStats.R | 216 ++++++++---- s20x-3.1-22/s20x/R/trendscatter.R | 153 +++++--- s20x-3.1-22/s20x/data/airpass.df.txt |only s20x-3.1-22/s20x/data/apples.df.txt |only s20x-3.1-22/s20x/data/arousal.df.txt |only s20x-3.1-22/s20x/data/beer.df.txt |only s20x-3.1-22/s20x/data/body.df.txt |only s20x-3.1-22/s20x/data/books.df.txt |only s20x-3.1-22/s20x/data/bursary.df.txt |only s20x-3.1-22/s20x/data/butterfat.df.txt |only s20x-3.1-22/s20x/data/camplake.df.txt |only s20x-3.1-22/s20x/data/chalk.df.txt |only s20x-3.1-22/s20x/data/computer.df.txt |only s20x-3.1-22/s20x/data/course.df.txt |only s20x-3.1-22/s20x/data/course2way.df.txt |only s20x-3.1-22/s20x/data/diamonds.df.txt |only s20x-3.1-22/s20x/data/fire.df.txt |only s20x-3.1-22/s20x/data/fruitfly.df.txt |only s20x-3.1-22/s20x/data/house.df.txt |only s20x-3.1-22/s20x/data/incomes.df.txt |only s20x-3.1-22/s20x/data/lakemary.df.txt |only s20x-3.1-22/s20x/data/larain.df.txt |only s20x-3.1-22/s20x/data/mazda.df.txt |only s20x-3.1-22/s20x/data/mening.df.txt |only s20x-3.1-22/s20x/data/mergers.df.txt |only s20x-3.1-22/s20x/data/mozart.df.txt |only s20x-3.1-22/s20x/data/nail.df.txt |only s20x-3.1-22/s20x/data/oysters.df.txt |only s20x-3.1-22/s20x/data/peru.df.txt |only s20x-3.1-22/s20x/data/rain.df.txt |only s20x-3.1-22/s20x/data/seeds.df.txt |only s20x-3.1-22/s20x/data/sheep.df.txt |only s20x-3.1-22/s20x/data/skulls.df.txt |only s20x-3.1-22/s20x/data/soyabean.df.txt |only s20x-3.1-22/s20x/data/teach.df.txt |only s20x-3.1-22/s20x/data/technitron.df.txt |only s20x-3.1-22/s20x/data/thyroid.df.txt |only s20x-3.1-22/s20x/data/toothpaste.df.txt |only s20x-3.1-22/s20x/data/zoo.df.txt |only s20x-3.1-22/s20x/man/airpass.df.Rd | 13 s20x-3.1-22/s20x/man/apples.df.Rd | 55 +-- s20x-3.1-22/s20x/man/arousal.df.Rd | 24 - s20x-3.1-22/s20x/man/autocorPlot.Rd |only s20x-3.1-22/s20x/man/beer.df.Rd | 13 s20x-3.1-22/s20x/man/body.df.Rd | 29 - s20x-3.1-22/s20x/man/books.df.Rd | 36 -- s20x-3.1-22/s20x/man/boxqq.Rd | 46 +- s20x-3.1-22/s20x/man/bursary.df.Rd | 21 - s20x-3.1-22/s20x/man/butterfat.df.Rd | 34 + s20x-3.1-22/s20x/man/camplake.df.Rd | 21 - s20x-3.1-22/s20x/man/chalk.df.Rd | 18 - s20x-3.1-22/s20x/man/ciReg.Rd | 36 +- s20x-3.1-22/s20x/man/computer.df.Rd | 22 - s20x-3.1-22/s20x/man/cooks20x.Rd | 29 - s20x-3.1-22/s20x/man/course.df.Rd | 45 +- s20x-3.1-22/s20x/man/course2way.df.Rd | 23 - s20x-3.1-22/s20x/man/crossFactors.Rd | 58 ++- s20x-3.1-22/s20x/man/crosstabs.Rd | 40 +- s20x-3.1-22/s20x/man/diamonds.df.Rd | 19 - s20x-3.1-22/s20x/man/eovcheck.Rd | 96 +++-- s20x-3.1-22/s20x/man/estimateContrasts.Rd | 57 ++- s20x-3.1-22/s20x/man/fire.df.Rd | 19 - s20x-3.1-22/s20x/man/freq1way.Rd | 70 ++-- s20x-3.1-22/s20x/man/fruitfly.df.Rd | 37 +- s20x-3.1-22/s20x/man/getVersion.Rd | 12 s20x-3.1-22/s20x/man/house.df.Rd | 19 - s20x-3.1-22/s20x/man/incomes.df.Rd | 9 s20x-3.1-22/s20x/man/interactionPlots.Rd | 145 +++++--- s20x-3.1-22/s20x/man/lakemary.df.Rd | 16 s20x-3.1-22/s20x/man/larain.df.Rd | 10 s20x-3.1-22/s20x/man/layout20x.Rd | 28 + s20x-3.1-22/s20x/man/levene.test.Rd | 45 +- s20x-3.1-22/s20x/man/mazda.df.Rd | 19 - s20x-3.1-22/s20x/man/mening.df.Rd | 14 s20x-3.1-22/s20x/man/mergers.df.Rd | 10 s20x-3.1-22/s20x/man/mozart.df.Rd | 21 - s20x-3.1-22/s20x/man/multipleComp.Rd | 32 + s20x-3.1-22/s20x/man/nail.df.Rd | 16 s20x-3.1-22/s20x/man/normcheck.Rd | 71 ++-- s20x-3.1-22/s20x/man/onewayPlot.Rd | 95 +++-- s20x-3.1-22/s20x/man/oysters.df.Rd | 23 - s20x-3.1-22/s20x/man/pairs20x.Rd | 30 - s20x-3.1-22/s20x/man/peru.df.Rd | 26 - s20x-3.1-22/s20x/man/predict20x.Rd | 58 ++- s20x-3.1-22/s20x/man/predictCount.Rd | 49 +- s20x-3.1-22/s20x/man/propslsd.new.Rd | 22 - s20x-3.1-22/s20x/man/rain.df.Rd | 26 - s20x-3.1-22/s20x/man/residPlot.Rd | 42 +- s20x-3.1-22/s20x/man/rowdistr.Rd | 76 ++-- s20x-3.1-22/s20x/man/rr.Rd | 11 s20x-3.1-22/s20x/man/s0x.Rd |only s20x-3.1-22/s20x/man/seeds.df.Rd | 19 - s20x-3.1-22/s20x/man/sheep.df.Rd | 19 - s20x-3.1-22/s20x/man/skewness.Rd | 27 - s20x-3.1-22/s20x/man/skulls.df.Rd | 35 +- s20x-3.1-22/s20x/man/soyabean.df.Rd | 25 - s20x-3.1-22/s20x/man/stripqq.Rd | 41 +- s20x-3.1-22/s20x/man/summary1way.Rd | 74 ++-- s20x-3.1-22/s20x/man/summary2way.Rd | 76 ++-- s20x-3.1-22/s20x/man/summaryStats.Rd | 96 +++-- s20x-3.1-22/s20x/man/teach.df.Rd | 23 - s20x-3.1-22/s20x/man/technitron.df.Rd | 29 - s20x-3.1-22/s20x/man/thyroid.df.Rd | 25 - s20x-3.1-22/s20x/man/toothpaste.df.Rd | 22 - s20x-3.1-22/s20x/man/trendscatter.Rd | 81 ++-- s20x-3.1-22/s20x/man/zoo.df.Rd | 31 - 178 files changed, 3983 insertions(+), 2919 deletions(-)
Title: Compositional Data Analysis
Description: Regression, classification, contour plots, hypothesis testing, fitting of distributions are the main function included.
Author: Michail Tsagris [aut, cre], Giorgos Athineou [aut]
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>
Diff between Compositional versions 2.3 dated 2017-02-28 and 2.4 dated 2017-05-29
DESCRIPTION | 8 +- MD5 | 138 +++++++++++++++++++++---------------------- NAMESPACE | 4 - R/alfa.R | 5 - R/alfa.knn.R | 7 -- R/alfa.pcr.R | 6 - R/alfa.profile.R | 3 R/alfa.rda.R | 1 R/alfa.reg.R | 10 --- R/alfa.ridge.R | 1 R/alfa.tune.R | 21 ++---- R/alfainv.R | 1 R/alfaknn.tune.R | 15 ---- R/alfapcr.tune.R | 19 +---- R/alfarda.tune.R | 16 ---- R/alfareg.tune.R | 10 --- R/alfaridge.plot.R | 1 R/alfaridge.tune.R | 23 ++----- R/bic.mixcompnorm.R | 3 R/bivt.contour.R | 24 ++----- R/comp.den.R | 1 R/comp.kerncontour.R | 19 +---- R/comp.knn.R | 21 +----- R/comp.reg.R | 1 R/compknn.tune.R | 33 ++-------- R/ddiri.R | 1 R/diri.contour.R | 9 +- R/diri.est.R | 7 -- R/diri.nr.R | 1 R/diri.reg.R | 10 +-- R/diri.reg2.R | 12 +-- R/el.test1.R | 8 -- R/el.test2.R | 11 --- R/frechet.R | 1 R/glm.pcr.R | 10 +-- R/glmpcr.tune.R | 16 ++-- R/helm.R | 8 -- R/hotel1T2.R | 1 R/hotel2T2.R | 3 R/james.R | 4 - R/js.compreg.R | 1 R/kl.compreg.R | 1 R/kl.diri.R | 15 +--- R/maov.R | 1 R/maovjames.R | 1 R/mix.compnorm.R | 9 -- R/mixnorm.contour.R | 23 +------ R/mkde.R | 1 R/mkde.tune.R | 3 R/multivreg.R | 4 - R/multivt.R | 11 --- R/norm.contour.R | 8 -- R/ols.compreg.R | 3 R/pcr.R | 16 ++-- R/pcr.tune.R | 36 ++++------- R/rcompnorm.R | 1 R/rcompsn.R | 1 R/rcompt.R | 1 R/rda.R | 5 - R/rda.tune.R | 26 +++----- R/rdiri.R | 1 R/ridge.plot.R | 2 R/ridge.tune.R | 4 - R/rmixcomp.R | 4 - R/skewnorm.contour.R | 7 -- R/spatmed.reg.R | 8 -- R/sscov.R | 1 R/sym.test.R | 6 - R/ternary.R | 2 man/Compositional-package.Rd | 4 - 70 files changed, 224 insertions(+), 475 deletions(-)
Title: Bayesian Survival Regression with Flexible Error and Random
Effects Distributions
Description: Contains Bayesian implementations of Mixed-Effects Accelerated Failure Time (MEAFT) models
for censored data. Those can be not only right-censored but also interval-censored,
doubly-interval-censored or misclassified interval-censored.
Author: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Maintainer: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Diff between bayesSurv versions 2.6 dated 2015-07-27 and 3.0 dated 2017-05-29
CHANGES | 4 ++ DESCRIPTION | 8 ++-- MD5 | 79 +++++++++++++++++++++---------------------- NAMESPACE | 2 - R/bayesBisurvreg.R | 6 +-- R/bayesDensity.R | 21 +++++++---- R/bayesGspline.R | 28 +++++++++++---- R/bayesHistogram.R | 4 +- R/bayessurvreg1.R | 13 ++++--- R/bayessurvreg1.priorb.R | 2 - R/bayessurvreg2.R | 4 +- R/bayessurvreg2.priorb.R | 2 - R/bayessurvreg3.R | 6 +-- R/bayessurvreg3Para.R | 6 +-- R/give.init.r.R | 10 +++-- R/give.init.y.R | 24 ++++++++++--- R/marginal.bayesGspline.R | 5 +- R/predictive.R | 2 - R/predictive2.R | 2 - R/predictive2Para.R | 2 - R/rMVNorm.R | 2 - R/rWishart.R | 2 - R/sampled.kendall.tau.R | 5 +- inst/CITATION | 19 ++++++++-- man/bayesBisurvreg.Rd | 1 man/bayesDensity.Rd | 1 man/bayesGspline.Rd | 6 ++- man/bayesHistogram.Rd | 1 man/bayessurvreg1.Rd | 2 + man/bayessurvreg2.Rd | 1 man/bayessurvreg3.Rd | 11 +++-- man/give.init.Rd | 3 + man/marginal.bayesGspline.Rd | 1 man/predictive.Rd | 1 man/predictive2.Rd | 1 man/rMVNorm.Rd | 1 man/rWishart.Rd | 1 man/sampled.kendall.tau.Rd | 1 src/00bayesSurv_init.cpp |only src/bayesBisurvreg.cpp | 6 ++- src/bayesBisurvreg.h | 7 +++ 41 files changed, 198 insertions(+), 105 deletions(-)
Title: Color-Based Plots for Multivariate Visualization
Description: Functions for color-based visualization of multivariate data, i.e. colorgrams or heatmaps. Lower-level functions map numeric values to colors, display a matrix as an array of colors, and draw color keys. Higher-level plotting functions generate a bivariate histogram, a dendrogram aligned with a color-coded matrix, a triangular distance matrix, and more.
Author: Aron C. Eklund
Maintainer: Aron C. Eklund <eklund@cbs.dtu.dk>
Diff between squash versions 1.0.7 dated 2015-08-02 and 1.0.8 dated 2017-05-29
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 37 ++++++++++++++++++++++++++++++++----- NEWS | 5 +++++ README.md | 6 +++--- 5 files changed, 49 insertions(+), 17 deletions(-)
Title: PRIM Survival Regression Classification
Description: Performs a unified treatment of Bump Hunting by Patient Rule Induction Method (PRIM) in Survival, Regression and Classification settings (SRC). The current version is a development release that only implements the case of a survival response. New features will be added soon as they are available.
Author: Jean-Eudes Dazard [aut, cre], Michael Choe [ctb], Michael LeBlanc [ctb], Alberto Santana [ctb]
Maintainer: Jean-Eudes Dazard <jean-eudes.dazard@case.edu>
Diff between PRIMsrc versions 0.6.3 dated 2015-11-20 and 0.7.0 dated 2017-05-29
PRIMsrc-0.6.3/PRIMsrc/inst/doc/PRIMsrc_0.6.3.pdf |only PRIMsrc-0.6.3/PRIMsrc/man/PrimSRC-package.Rd |only PRIMsrc-0.6.3/PRIMsrc/man/PrimSRC.news.Rd |only PRIMsrc-0.6.3/PRIMsrc/man/plot.Rd |only PRIMsrc-0.6.3/PRIMsrc/man/predict.Rd |only PRIMsrc-0.6.3/PRIMsrc/man/print.Rd |only PRIMsrc-0.6.3/PRIMsrc/man/summary.Rd |only PRIMsrc-0.7.0/PRIMsrc/DESCRIPTION | 20 PRIMsrc-0.7.0/PRIMsrc/LICENSE | 1266 ++-- PRIMsrc-0.7.0/PRIMsrc/MD5 | 75 PRIMsrc-0.7.0/PRIMsrc/NAMESPACE | 45 PRIMsrc-0.7.0/PRIMsrc/R/PRIMsrc.internal.r | 6198 +++++++++++++++-------- PRIMsrc-0.7.0/PRIMsrc/R/PRIMsrc.r | 3422 ++++++------ PRIMsrc-0.7.0/PRIMsrc/README.md |only PRIMsrc-0.7.0/PRIMsrc/data/Real.1.rda |binary PRIMsrc-0.7.0/PRIMsrc/data/Real.2.rda |binary PRIMsrc-0.7.0/PRIMsrc/data/Synthetic.1.rda |binary PRIMsrc-0.7.0/PRIMsrc/data/Synthetic.1b.rda |binary PRIMsrc-0.7.0/PRIMsrc/data/Synthetic.2.rda |binary PRIMsrc-0.7.0/PRIMsrc/data/Synthetic.3.rda |binary PRIMsrc-0.7.0/PRIMsrc/data/Synthetic.4.rda |binary PRIMsrc-0.7.0/PRIMsrc/data/datalist | 14 PRIMsrc-0.7.0/PRIMsrc/inst/CITATION | 191 PRIMsrc-0.7.0/PRIMsrc/inst/NEWS | 307 - PRIMsrc-0.7.0/PRIMsrc/inst/doc/PRIMsrc_0.7.0.pdf |only PRIMsrc-0.7.0/PRIMsrc/man/PRIMsrc-package.Rd |only PRIMsrc-0.7.0/PRIMsrc/man/PRIMsrc.news.Rd |only PRIMsrc-0.7.0/PRIMsrc/man/Real.1-data.Rd | 63 PRIMsrc-0.7.0/PRIMsrc/man/Real.2-data.Rd | 64 PRIMsrc-0.7.0/PRIMsrc/man/Synthetic.1-data.Rd | 42 PRIMsrc-0.7.0/PRIMsrc/man/Synthetic.1b-data.Rd | 42 PRIMsrc-0.7.0/PRIMsrc/man/Synthetic.2-data.Rd | 42 PRIMsrc-0.7.0/PRIMsrc/man/Synthetic.3-data.Rd | 42 PRIMsrc-0.7.0/PRIMsrc/man/Synthetic.4-data.Rd | 42 PRIMsrc-0.7.0/PRIMsrc/man/plot.sbh.Rd |only PRIMsrc-0.7.0/PRIMsrc/man/plot_boxkm.Rd | 97 PRIMsrc-0.7.0/PRIMsrc/man/plot_boxtrace.Rd | 98 PRIMsrc-0.7.0/PRIMsrc/man/plot_boxtraj.Rd | 88 PRIMsrc-0.7.0/PRIMsrc/man/plot_profile.Rd | 120 PRIMsrc-0.7.0/PRIMsrc/man/predict.sbh.Rd |only PRIMsrc-0.7.0/PRIMsrc/man/print.sbh.Rd |only PRIMsrc-0.7.0/PRIMsrc/man/sbh.Rd | 884 ++- PRIMsrc-0.7.0/PRIMsrc/man/summary.sbh.Rd |only PRIMsrc-0.7.0/PRIMsrc/src |only 44 files changed, 8032 insertions(+), 5130 deletions(-)
Title: Extended Mixed Models Using Latent Classes and Latent Processes
Description: Estimation of various extensions of the mixed models including latent class mixed models, joint latent latent class mixed models and mixed models for curvilinear univariate or multivariate longitudinal outcomes using a maximum likelihood estimation method.
Author: Cecile Proust-Lima, Viviane Philipps, Amadou Diakite and Benoit Liquet
Maintainer: Cecile Proust-Lima <cecile.proust-lima@inserm.fr>
Diff between lcmm versions 1.7.7 dated 2017-03-23 and 1.7.8 dated 2017-05-29
DESCRIPTION | 8 +-- MD5 | 34 ++++++------- NAMESPACE | 4 - NEWS | 5 ++ R/plot.R | 20 ++++---- R/plot.predictL.R | 30 ++++++++++-- R/plot.predictY.R | 46 +++++++++++++----- R/plot.predictlink.R | 126 +++++++++++++++++++++++++++++++++++---------------- R/plotfit.R | 18 ++++++- inst/CITATION | 31 ++++++++++-- man/Jointlcmm.Rd | 5 +- man/gridsearch.Rd | 4 + man/hlme.Rd | 5 +- man/lcmm-package.Rd | 11 ++-- man/lcmm.Rd | 4 + man/multlcmm.Rd | 8 +-- man/plot.lcmm.Rd | 14 +++-- man/plot.predict.Rd | 11 +++- 18 files changed, 267 insertions(+), 117 deletions(-)
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial trading strategies.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Wouter Thielen [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between quantmod versions 0.4-8 dated 2017-04-19 and 0.4-9 dated 2017-05-29
DESCRIPTION | 13 +-- MD5 | 14 +-- R/adjustOHLC.R | 4 - R/getDividends.R | 22 ++--- R/getOptionChain.R | 4 - R/getSplits.R | 28 ++----- R/getSymbols.R | 177 ++++++++++++++++++++++++++++++++++++++---------- man/getSymbols.yahoo.Rd | 16 ++++ 8 files changed, 194 insertions(+), 84 deletions(-)
Title: Mean-Variance Regularization
Description: This is a non-parametric method for joint adaptive mean-variance regularization and variance stabilization of high-dimensional data. It is suited for handling difficult problems posed by high-dimensional multivariate datasets (p >> n paradigm). Among those are that the variance is often a function of the mean, variable-specific estimators of variances are not reliable, and tests statistics have low powers due to a lack of degrees of freedom. Key features include:
(i) Normalization and/or variance stabilization of the data,
(ii) Computation of mean-variance-regularized t-statistics (F-statistics to follow),
(iii) Generation of diverse diagnostic plots,
(iv) Computationally efficient implementation using C/C++ interfacing and an option for parallel computing to enjoy a faster and easier experience in the R environment.
Author: Jean-Eudes Dazard [aut, cre], Hua Xu [ctb], Alberto Santana [ctb]
Maintainer: Jean-Eudes Dazard <jean-eudes.dazard@case.edu>
Diff between MVR versions 1.31.0 dated 2016-10-25 and 1.32.0 dated 2017-05-29
MVR-1.31.0/MVR/inst/doc/MVR_1.31.0.pdf |only MVR-1.32.0/MVR/DESCRIPTION | 14 MVR-1.32.0/MVR/MD5 | 36 MVR-1.32.0/MVR/NAMESPACE | 24 MVR-1.32.0/MVR/R/MVRr.internal.r | 1532 ++++++++++----------- MVR-1.32.0/MVR/R/MVRr.r | 1752 ++++++++++++------------- MVR-1.32.0/MVR/README.md |only MVR-1.32.0/MVR/inst/NEWS | 8 MVR-1.32.0/MVR/inst/doc/MVR_1.32.0.pdf |only MVR-1.32.0/MVR/man/MVR-package.Rd | 38 MVR-1.32.0/MVR/man/MVR.news.Rd | 31 MVR-1.32.0/MVR/man/Real-data.Rd | 20 MVR-1.32.0/MVR/man/Synthetic-data.Rd | 20 MVR-1.32.0/MVR/man/cluster.diagnostic.Rd | 24 MVR-1.32.0/MVR/man/mvr.Rd | 194 +- MVR-1.32.0/MVR/man/mvrt.test.Rd | 190 +- MVR-1.32.0/MVR/man/normalization.diagnostic.Rd | 22 MVR-1.32.0/MVR/man/stabilization.diagnostic.Rd | 22 MVR-1.32.0/MVR/man/target.diagnostic.Rd | 23 MVR-1.32.0/MVR/src/MVR_init.cpp |only MVR-1.32.0/MVR/src/MVRc.cpp | 1 21 files changed, 2018 insertions(+), 1933 deletions(-)
Title: Auxiliary Functions for Phenological Data Analysis
Description: Provides some easy-to-use functions for
spatial analyses of (plant-) phenological data
sets and satellite observations of vegetation.
Author: Maximilian Lange, Daniel Doktor
Maintainer: Daniel Doktor <daniel.doktor@ufz.de>
Diff between phenex versions 1.1-9 dated 2015-12-18 and 1.4-5 dated 2017-05-29
phenex-1.1-9/phenex/man/bise1.Rd |only phenex-1.1-9/phenex/man/bise2.Rd |only phenex-1.1-9/phenex/src/asymgauss.c |only phenex-1.1-9/phenex/src/asymgauss.h |only phenex-1.1-9/phenex/src/bise.c |only phenex-1.1-9/phenex/src/bise.h |only phenex-1.1-9/phenex/src/gauss.c |only phenex-1.1-9/phenex/src/gauss.h |only phenex-1.4-5/phenex/DESCRIPTION | 12 phenex-1.4-5/phenex/INDEX | 1 phenex-1.4-5/phenex/MD5 | 59 +-- phenex-1.4-5/phenex/NAMESPACE | 15 phenex-1.4-5/phenex/R/dLogistic.R | 70 +--- phenex-1.4-5/phenex/R/dSig.R | 68 +-- phenex-1.4-5/phenex/R/dSigC.R | 2 phenex-1.4-5/phenex/R/date2doy.R | 4 phenex-1.4-5/phenex/R/gauss.R | 126 ++++--- phenex-1.4-5/phenex/R/gaussMix.R |only phenex-1.4-5/phenex/R/growth.R | 74 +--- phenex-1.4-5/phenex/R/modelNDVI.R | 44 -- phenex-1.4-5/phenex/R/ndvi-class.R | 443 ++++++++++++++++---------- phenex-1.4-5/phenex/man/NDVI-class.Rd | 41 +- phenex-1.4-5/phenex/man/bise.Rd |only phenex-1.4-5/phenex/man/detectSeasons.Rd |only phenex-1.4-5/phenex/man/integrateTimeserie.Rd | 18 - phenex-1.4-5/phenex/man/modelNDVI.Rd | 26 - phenex-1.4-5/phenex/man/phenoPhase.Rd | 22 - phenex-1.4-5/phenex/man/seasons.Rd |only phenex-1.4-5/phenex/src/analyzeBits.c | 1 phenex-1.4-5/phenex/src/condition.c | 3 phenex-1.4-5/phenex/src/date2doy.c | 5 phenex-1.4-5/phenex/src/date2doy.h | 1 phenex-1.4-5/phenex/src/phenex.c |only phenex-1.4-5/phenex/src/quicksort.c | 1 phenex-1.4-5/phenex/src/ravg.c | 1 phenex-1.4-5/phenex/src/savgol.c | 1 phenex-1.4-5/phenex/src/sigmoid.c | 1 37 files changed, 553 insertions(+), 486 deletions(-)
Title: Circular Visualization
Description: Circular layout is an efficient way for the visualization of huge
amounts of information. Here this package provides an implementation
of circular layout generation in R as well as an enhancement of available
software. The flexibility of the package is based on the usage of low-level
graphics functions such that self-defined high-level graphics can be easily
implemented by users for specific purposes. Together with the seamless
connection between the powerful computational and visual environment in R,
it gives users more convenience and freedom to design figures for
better understanding complex patterns behind multiple dimensional data.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between circlize versions 0.3.10 dated 2017-03-07 and 0.4.0 dated 2017-05-29
circlize-0.3.10/circlize/R/copy_IRanges.R |only circlize-0.3.10/circlize/inst/doc/circlize.R |only circlize-0.3.10/circlize/vignettes/figures |only circlize-0.3.10/circlize/vignettes/src |only circlize-0.4.0/circlize/DESCRIPTION | 26 circlize-0.4.0/circlize/MD5 | 220 - circlize-0.4.0/circlize/NAMESPACE | 119 circlize-0.4.0/circlize/NEWS | 20 circlize-0.4.0/circlize/R/chordDiagram.R | 217 - circlize-0.4.0/circlize/R/circos.nested.R |only circlize-0.4.0/circlize/R/genomic.R | 401 ++ circlize-0.4.0/circlize/R/genomic_utils.R | 88 circlize-0.4.0/circlize/R/global.R | 288 + circlize-0.4.0/circlize/R/link.R | 125 circlize-0.4.0/circlize/R/overview.R | 27 circlize-0.4.0/circlize/R/plot.R | 457 ++- circlize-0.4.0/circlize/R/regions.R |only circlize-0.4.0/circlize/R/utils.R | 485 ++- circlize-0.4.0/circlize/build/vignette.rds |binary circlize-0.4.0/circlize/inst/doc/circlize.Rnw | 1408 --------- circlize-0.4.0/circlize/inst/doc/circlize.pdf |binary circlize-0.4.0/circlize/inst/doc/circular_phylogenetic_tree.R | 99 circlize-0.4.0/circlize/inst/doc/circular_phylogenetic_tree.Rnw | 113 circlize-0.4.0/circlize/inst/doc/circular_phylogenetic_tree.pdf |binary circlize-0.4.0/circlize/inst/doc/genomic_plot.R | 1153 ------- circlize-0.4.0/circlize/inst/doc/genomic_plot.Rnw | 1464 ---------- circlize-0.4.0/circlize/inst/doc/genomic_plot.pdf |binary circlize-0.4.0/circlize/inst/doc/interesting_graphics.R | 90 circlize-0.4.0/circlize/inst/doc/interesting_graphics.Rnw | 142 circlize-0.4.0/circlize/inst/doc/interesting_graphics.pdf |binary circlize-0.4.0/circlize/inst/doc/visualize_relations_by_chord_diagram.R | 627 ---- circlize-0.4.0/circlize/inst/doc/visualize_relations_by_chord_diagram.Rnw | 907 ------ circlize-0.4.0/circlize/inst/doc/visualize_relations_by_chord_diagram.pdf |binary circlize-0.4.0/circlize/inst/extdata/chrom_info_list.rds |only circlize-0.4.0/circlize/inst/extdata/cytoband_list.rds |only circlize-0.4.0/circlize/inst/extdata/download_ucsc.R |only circlize-0.4.0/circlize/inst/extdata/tagments_WGBS_DMR.RData |only circlize-0.4.0/circlize/inst/extdata/tp_family_df.rds |only circlize-0.4.0/circlize/man/CELL_META.rd |only circlize-0.4.0/circlize/man/Subset.CELL_META.rd |only circlize-0.4.0/circlize/man/add_transparency.rd |only circlize-0.4.0/circlize/man/chordDiagram.rd | 105 circlize-0.4.0/circlize/man/chordDiagramFromDataFrame.rd | 29 circlize-0.4.0/circlize/man/chordDiagramFromMatrix.rd | 27 circlize-0.4.0/circlize/man/circlize-package.rd | 27 circlize-0.4.0/circlize/man/circlize.rd | 26 circlize-0.4.0/circlize/man/circos.axis.rd | 18 circlize-0.4.0/circlize/man/circos.clear.rd | 10 circlize-0.4.0/circlize/man/circos.dendrogram.rd | 10 circlize-0.4.0/circlize/man/circos.genomicDensity.rd | 5 circlize-0.4.0/circlize/man/circos.genomicHeatmap.rd |only circlize-0.4.0/circlize/man/circos.genomicIdeogram.rd |only circlize-0.4.0/circlize/man/circos.genomicInitialize.rd | 8 circlize-0.4.0/circlize/man/circos.genomicLabels.rd |only circlize-0.4.0/circlize/man/circos.genomicLines.rd | 5 circlize-0.4.0/circlize/man/circos.genomicLink.rd | 3 circlize-0.4.0/circlize/man/circos.genomicPoints.rd | 1 circlize-0.4.0/circlize/man/circos.genomicPosTransformLines.rd | 2 circlize-0.4.0/circlize/man/circos.genomicRainfall.rd | 11 circlize-0.4.0/circlize/man/circos.genomicText.rd | 4 circlize-0.4.0/circlize/man/circos.info.rd | 9 circlize-0.4.0/circlize/man/circos.initialize.rd | 35 circlize-0.4.0/circlize/man/circos.initializeWithIdeogram.rd | 23 circlize-0.4.0/circlize/man/circos.lines.rd | 16 circlize-0.4.0/circlize/man/circos.link.rd | 202 - circlize-0.4.0/circlize/man/circos.nested.rd |only circlize-0.4.0/circlize/man/circos.par.rd | 33 circlize-0.4.0/circlize/man/circos.points.rd | 21 circlize-0.4.0/circlize/man/circos.polygon.rd | 4 circlize-0.4.0/circlize/man/circos.rect.rd | 3 circlize-0.4.0/circlize/man/circos.segments.rd | 6 circlize-0.4.0/circlize/man/circos.text.rd | 50 circlize-0.4.0/circlize/man/circos.track.rd | 2 circlize-0.4.0/circlize/man/circos.trackHist.rd | 26 circlize-0.4.0/circlize/man/circos.trackLines.rd | 2 circlize-0.4.0/circlize/man/circos.trackPlotRegion.rd | 59 circlize-0.4.0/circlize/man/circos.trackPoints.rd | 10 circlize-0.4.0/circlize/man/circos.trackText.rd | 2 circlize-0.4.0/circlize/man/circos.updatePlotRegion.rd | 16 circlize-0.4.0/circlize/man/circos.yaxis.rd | 26 circlize-0.4.0/circlize/man/col2value.rd | 10 circlize-0.4.0/circlize/man/colorRamp2.rd | 34 circlize-0.4.0/circlize/man/convert_height.rd |only circlize-0.4.0/circlize/man/convert_length.rd |only circlize-0.4.0/circlize/man/convert_x.rd |only circlize-0.4.0/circlize/man/convert_y.rd |only circlize-0.4.0/circlize/man/degree.rd | 6 circlize-0.4.0/circlize/man/draw.sector.rd | 7 circlize-0.4.0/circlize/man/genomicDensity.rd | 4 circlize-0.4.0/circlize/man/get.all.sector.index.rd | 2 circlize-0.4.0/circlize/man/get.all.track.index.rd | 2 circlize-0.4.0/circlize/man/get.cell.meta.data.rd | 59 circlize-0.4.0/circlize/man/get.current.chromosome.rd | 2 circlize-0.4.0/circlize/man/get.current.sector.index.rd |only circlize-0.4.0/circlize/man/get.current.track.index.rd |only circlize-0.4.0/circlize/man/highlight.sector.rd | 4 circlize-0.4.0/circlize/man/posTransform.default.rd | 2 circlize-0.4.0/circlize/man/posTransform.text.rd | 2 circlize-0.4.0/circlize/man/print.CELL_META.rd |only circlize-0.4.0/circlize/man/rainfallTransform.rd | 4 circlize-0.4.0/circlize/man/rand_color.rd | 12 circlize-0.4.0/circlize/man/read.chromInfo.rd | 32 circlize-0.4.0/circlize/man/read.cytoband.rd | 34 circlize-0.4.0/circlize/man/reverse.circlize.rd | 21 circlize-0.4.0/circlize/man/set.current.cell.rd |only circlize-0.4.0/circlize/man/uh.rd |only circlize-0.4.0/circlize/man/ux.rd |only circlize-0.4.0/circlize/man/uy.rd |only circlize-0.4.0/circlize/vignettes/circlize.Rnw | 1408 --------- circlize-0.4.0/circlize/vignettes/circular_phylogenetic_tree.Rnw | 113 circlize-0.4.0/circlize/vignettes/genomic_plot.Rnw | 1464 ---------- circlize-0.4.0/circlize/vignettes/interesting_graphics.Rnw | 142 circlize-0.4.0/circlize/vignettes/visualize_relations_by_chord_diagram.Rnw | 907 ------ 113 files changed, 2263 insertions(+), 11320 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-29 1.0.1
Title: European Commission Annual Macro-Economic (AMECO) Database
Description: Annual macro-economic database provided by the European Commission.
Author: Eric Persson [aut, cre]
Maintainer: Eric Persson <expersso5@gmail.com>
Diff between ameco versions 0.2.6 dated 2017-02-15 and 0.2.7 dated 2017-05-29
ameco-0.2.6/ameco/README.md |only ameco-0.2.7/ameco/DESCRIPTION | 8 ++++---- ameco-0.2.7/ameco/MD5 | 13 ++++++------- ameco-0.2.7/ameco/data/ameco.RData |binary ameco-0.2.7/ameco/inst/doc/ameco_dataset.Rmd | 2 +- ameco-0.2.7/ameco/inst/doc/ameco_dataset.html | 11 ++++++----- ameco-0.2.7/ameco/tests/testthat/tests.R | 2 +- ameco-0.2.7/ameco/vignettes/ameco_dataset.Rmd | 2 +- 8 files changed, 19 insertions(+), 19 deletions(-)
More information about shiny.semantic at CRAN
Permanent link
Title: Analysis of Queueing Networks and Models
Description: It provides versatile tools for analysis of birth and death based Markovian Queueing Models
and Single and Multiclass Product-Form Queueing Networks.
It implements M/M/1, M/M/c, M/M/Infinite, M/M/1/K, M/M/c/K, M/M/c/c, M/M/1/K/K, M/M/c/K/K, M/M/c/K/m, M/M/Infinite/K/K,
Multiple Channel Open Jackson Networks, Multiple Channel Closed Jackson Networks,
Single Channel Multiple Class Open Networks, Single Channel Multiple Class Closed Networks
and Single Channel Multiple Class Mixed Networks.
Also it provides a B-Erlang, C-Erlang and Engset calculators.
This work is dedicated to the memory of D. Sixto Rios Insua.
Author: Pedro Canadilla
Maintainer: Pedro Canadilla <pedro.canadilla@gmail.com>
Diff between queueing versions 0.2.9 dated 2017-03-21 and 0.2.10 dated 2017-05-29
ChangeLog | 6 DESCRIPTION | 8 MD5 | 28 R/CJN.R |only R/MCCN.R |only R/MCMN.R |only R/MCON.R |only R/MM1.R |only R/MM1K.R |only R/MM1KK.R |only R/MMC.R |only R/MMCC.R |only R/MMCK.R |only R/MMCKK.R |only R/MMCKM.R |only R/MMInf.R |only R/MMInfKK.R |only R/OJN.R |only R/common.R |only R/queueing.R | 4604 -------------------------------------------------- man/NewInput.MM1.Rd | 4 man/NewInput.MMC.Rd | 2 man/NewInput.MMInf.Rd | 2 23 files changed, 37 insertions(+), 4617 deletions(-)