Title: Semi-Parametric Variance Regression
Description: Methods for fitting semi-parametric mean and variance models, with normal or censored data. Also extended to allow a regression in the location, scale and shape parameters.
Author: Kristy Robledo [aut, cre],
Ian Marschner [ths]
Maintainer: Kristy Robledo <robledo.kristy@gmail.com>
Diff between VarReg versions 1.0 dated 2017-03-21 and 1.0.1 dated 2017-05-30
DESCRIPTION | 6 +++--- MD5 | 33 ++++++++++++++++++--------------- R/VarReg_control.R | 2 +- R/censloop_em.R | 2 +- R/criterion.R | 2 +- R/lss_calc.R | 5 ++--- R/plotVarReg.R | 2 +- R/plotlssVarReg.R | 9 ++++----- R/seVarReg.R | 12 ++++++------ R/vcf.R |only data/vcf.rdata |only man/VarReg.control.Rd | 2 +- man/censloop_em.Rd | 2 +- man/criterion.Rd | 2 +- man/lss_calc.Rd | 1 - man/plotVarReg.Rd | 2 +- man/plotlssVarReg.Rd | 9 ++++----- man/seVarReg.Rd | 12 ++++++------ man/vcf.Rd |only 19 files changed, 51 insertions(+), 52 deletions(-)
Title: Bindings for the 'HaveIBeenPwned.com' Data Breach API
Description: Utilising the 'Have I been pwned?' API (see <https://haveibeenpwned.com/API/v2>
for more information), check whether email addresses and/or user names have been present
in a publicly disclosed data breach.
Author: Steph Locke [aut, cre],
Troy Hunt [aut] (HaveIBeenPwned.com)
Maintainer: Steph Locke <stephanie.g.locke@gmail.com>
Diff between HIBPwned versions 0.1.4 dated 2017-05-04 and 0.1.6 dated 2017-05-30
DESCRIPTION | 10 - MD5 | 10 - NEWS.md | 7 - R/utils.R | 2 README.md | 296 ++++++++++++++++++++++++++++------------------------- inst/doc/HIBP.html | 27 ++-- 6 files changed, 193 insertions(+), 159 deletions(-)
Title: Empirical Data Platform Client
Description: R client for Empirical Data Platform. More information is at <https://empirical.com>. For support, contact support@empirical.com.
Author: Empirical Engineering
Maintainer: Madeleine Thompson <madeleine@empirical.com>
Diff between edpclient versions 0.0.1 dated 2017-05-28 and 0.1.0 dated 2017-05-30
edpclient-0.0.1/edpclient/tests/lint.R |only edpclient-0.0.1/edpclient/tests/test_create_population.R |only edpclient-0.0.1/edpclient/tests/test_dataframes.R |only edpclient-0.0.1/edpclient/tests/test_population.R |only edpclient-0.0.1/edpclient/tests/test_session.R |only edpclient-0.1.0/edpclient/DESCRIPTION | 10 ++-- edpclient-0.1.0/edpclient/MD5 | 30 ++++++++------ edpclient-0.1.0/edpclient/NAMESPACE | 7 +++ edpclient-0.1.0/edpclient/R/create_population.R | 7 ++- edpclient-0.1.0/edpclient/R/popmod.R | 31 ++++++--------- edpclient-0.1.0/edpclient/R/population.R | 5 ++ edpclient-0.1.0/edpclient/R/session.R | 31 ++++++++++----- edpclient-0.1.0/edpclient/R/visibility.R |only edpclient-0.1.0/edpclient/build/partial.rdb |binary edpclient-0.1.0/edpclient/man/create_population.Rd | 4 - edpclient-0.1.0/edpclient/man/delete_population.Rd |only edpclient-0.1.0/edpclient/man/visibility.Rd |only edpclient-0.1.0/edpclient/tests/testthat |only edpclient-0.1.0/edpclient/tests/testthat.R |only 19 files changed, 76 insertions(+), 49 deletions(-)
Title: Association Between Methylation and a Phenotype of Interest
Description: Is designed to test for association between methylation at CpG sites across the genome and a phenotype of interest, adjusting for any relevant covariates. The package can perform standard analyses of large datasets very quickly with no need to impute the data. It can also handle mixed effects models with chip or batch entering the model as a random intercept. Also includes tools to apply quality control filters, perform permutation tests, and create QQ plots, manhattan plots, and scatterplots for individual CpG sites.
Author: Barfield, R., Conneely, K., Kilaru,V
Maintainer: R Barfield <barfieldrichard8@gmail.com>
Diff between CpGassoc versions 2.55 dated 2016-01-29 and 2.60 dated 2017-05-30
DESCRIPTION | 10 MD5 | 20 R/cpg.work.R | 4 build/vignette.rds |binary data/annotation.rda |binary data/samplecpg.rda |binary data/samplepheno.rda |binary inst/doc/CpGassoc.Rnw | 1900 ++++++++++++++++++++++++------------------------ inst/doc/CpGassoc.pdf |binary man/CpGassoc-package.Rd | 6 vignettes/CpGassoc.Rnw | 1900 ++++++++++++++++++++++++------------------------ 11 files changed, 1920 insertions(+), 1920 deletions(-)
Title: Some Invalid Some Valid Instrumental Variables Estimator
Description: Selects invalid instruments amongst a candidate of potentially bad instruments. The algorithm selects potentially invalid instruments and provides an estimate of the causal effect between exposure and outcome.
Author: Hyunseung Kang <hyunseung@stat.wisc.edu>
Maintainer: Hyunseung Kang <hyunseung@stat.wisc.edu>
Diff between sisVIVE versions 1.3 dated 2016-06-05 and 1.4 dated 2017-05-30
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Title: R to Symbolic Data Analysis
Description: Symbolic Data Analysis (SDA) was proposed by professor Edwin Diday in 1987, the main purpose of SDA is to substitute the set of rows (cases) in the data table for a concept (second order statistical unit). This package implements, to the symbolic case, certain techniques of automatic classification, as well as some linear models.
Author: Oldemar Rodriguez R. with contributions from Carlos Aguero, Olger Calderon, Roberto Zuniga and Jorge Arce
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between RSDA versions 1.3 dated 2015-11-03 and 1.4 dated 2017-05-30
RSDA-1.3/RSDA/man/RSDA-package.Rd |only RSDA-1.3/RSDA/man/sym.kmeans.Rd |only RSDA-1.4/RSDA/DESCRIPTION | 18 RSDA-1.4/RSDA/MD5 | 381 +++++++------ RSDA-1.4/RSDA/NAMESPACE | 23 RSDA-1.4/RSDA/R/R2.L.R | 44 + RSDA-1.4/RSDA/R/R2.U.R | 44 + RSDA-1.4/RSDA/R/RMSE.L.R | 50 + RSDA-1.4/RSDA/R/RMSE.U.R | 50 + RSDA-1.4/RSDA/R/RSDA.R |only RSDA-1.4/RSDA/R/SDS.to.RSDA.R | 430 ++++++++------- RSDA-1.4/RSDA/R/SODAS.to.RSDA.R | 144 +++-- RSDA-1.4/RSDA/R/calculate.probs.R |only RSDA-1.4/RSDA/R/centers.interval.R | 64 +- RSDA-1.4/RSDA/R/cfa.CVPRealz.R | 51 - RSDA-1.4/RSDA/R/cfa.Czz.R | 84 +- RSDA-1.4/RSDA/R/cfa.MatrixZ.R | 88 +-- RSDA-1.4/RSDA/R/cfa.minmax.R | 292 +++++----- RSDA-1.4/RSDA/R/cfa.scatterplot.R | 124 ++-- RSDA-1.4/RSDA/R/cfa.totals.R | 109 +-- RSDA-1.4/RSDA/R/classic.to.sym.R | 279 ++++++++- RSDA-1.4/RSDA/R/cor.sym.data.table.R |only RSDA-1.4/RSDA/R/cov.sym.data.table.R |only RSDA-1.4/RSDA/R/data.R |only RSDA-1.4/RSDA/R/deter.coefficient.R | 59 +- RSDA-1.4/RSDA/R/display.sym.table.R | 26 RSDA-1.4/RSDA/R/dist.vect.R | 44 + RSDA-1.4/RSDA/R/dist.vect.matrix.R | 55 + RSDA-1.4/RSDA/R/downarrow.matrix.R | 165 ++--- RSDA-1.4/RSDA/R/generate.sym.table.R | 113 ++- RSDA-1.4/RSDA/R/interscal.B.R | 58 +- RSDA-1.4/RSDA/R/interscal.R | 134 ++-- RSDA-1.4/RSDA/R/interscal.delta.R | 74 +- RSDA-1.4/RSDA/R/interval.dist.R | 114 ++- RSDA-1.4/RSDA/R/interval.dist.tobj.R | 141 ++-- RSDA-1.4/RSDA/R/mean.sym.data.table.R |only RSDA-1.4/RSDA/R/median.sym.data.table.R |only RSDA-1.4/RSDA/R/neighbors.vertex.R | 44 + RSDA-1.4/RSDA/R/newSobject.R | 65 +- RSDA-1.4/RSDA/R/norm.vect.R | 36 + RSDA-1.4/RSDA/R/plotX.slice.R | 116 +--- RSDA-1.4/RSDA/R/predictsym.glm.R | 127 ++-- RSDA-1.4/RSDA/R/predictsym.lm.R | 135 ++-- RSDA-1.4/RSDA/R/process.continue.variable.R | 36 - RSDA-1.4/RSDA/R/process.continuum.variable.R | 11 RSDA-1.4/RSDA/R/process.histogram.variable.R | 64 +- RSDA-1.4/RSDA/R/process.inter.cont.variable.R | 41 - RSDA-1.4/RSDA/R/process.interval.variable.R | 12 RSDA-1.4/RSDA/R/process.modal.variable.R |only RSDA-1.4/RSDA/R/process.mult.nominal.modif.variable.R | 69 +- RSDA-1.4/RSDA/R/process.mult.nominal.variable.R | 62 +- RSDA-1.4/RSDA/R/process.nominal.variable.R | 52 - RSDA-1.4/RSDA/R/process.set.variable.R | 46 - RSDA-1.4/RSDA/R/read.sym.table.R | 247 ++++++-- RSDA-1.4/RSDA/R/rightarrow.matrix.R | 7 RSDA-1.4/RSDA/R/sd.sym.data.table.R |only RSDA-1.4/RSDA/R/sym.cfa.R | 197 +++--- RSDA-1.4/RSDA/R/sym.circle.plot.R | 108 ++- RSDA-1.4/RSDA/R/sym.cor.R | 66 +- RSDA-1.4/RSDA/R/sym.cov.R | 104 ++- RSDA-1.4/RSDA/R/sym.data.table.to.sym.var.R |only RSDA-1.4/RSDA/R/sym.glm.R | 115 ++-- RSDA-1.4/RSDA/R/sym.hclust.R | 46 + RSDA-1.4/RSDA/R/sym.histogram.pca.R | 90 ++- RSDA-1.4/RSDA/R/sym.interval.pc.R | 250 +++++--- RSDA-1.4/RSDA/R/sym.interval.pc.limits.R | 105 ++- RSDA-1.4/RSDA/R/sym.interval.pca.R | 333 +++++++---- RSDA-1.4/RSDA/R/sym.kmeans.R | 94 ++- RSDA-1.4/RSDA/R/sym.lm.R | 121 ++-- RSDA-1.4/RSDA/R/sym.lm.bi.R | 176 ++++-- RSDA-1.4/RSDA/R/sym.mds.R | 44 + RSDA-1.4/RSDA/R/sym.mean.R | 75 +- RSDA-1.4/RSDA/R/sym.median.R | 71 +- RSDA-1.4/RSDA/R/sym.normalize.R | 40 - RSDA-1.4/RSDA/R/sym.obj.R | 62 +- RSDA-1.4/RSDA/R/sym.scatterplot.R | 133 +++- RSDA-1.4/RSDA/R/sym.scatterplot.ggplot.R | 105 ++- RSDA-1.4/RSDA/R/sym.scatterplot3d.R | 157 +++-- RSDA-1.4/RSDA/R/sym.sd.R | 91 ++- RSDA-1.4/RSDA/R/sym.var.R | 84 ++ RSDA-1.4/RSDA/R/sym.variance.R | 92 ++- RSDA-1.4/RSDA/R/var.sym.data.table.R |only RSDA-1.4/RSDA/R/variance.princ.curve.R | 52 + RSDA-1.4/RSDA/R/vertex.interval.R | 97 ++- RSDA-1.4/RSDA/R/write.sym.table.R | 33 + RSDA-1.4/RSDA/data/Cardiological.rda |binary RSDA-1.4/RSDA/data/StudentsGrades.rda |binary RSDA-1.4/RSDA/data/USCrime.rda |binary RSDA-1.4/RSDA/data/VeterinaryData.rda |binary RSDA-1.4/RSDA/data/abalone.rda |binary RSDA-1.4/RSDA/data/ex1_db2so.rda |binary RSDA-1.4/RSDA/data/ex_cfa1.rda |binary RSDA-1.4/RSDA/data/ex_cfa2.rda |binary RSDA-1.4/RSDA/data/example1.rda |binary RSDA-1.4/RSDA/data/example2.rda |binary RSDA-1.4/RSDA/data/example3.rda |binary RSDA-1.4/RSDA/data/example4.rda |binary RSDA-1.4/RSDA/data/example5.rda |binary RSDA-1.4/RSDA/data/example6.rda |binary RSDA-1.4/RSDA/data/example7.rda |binary RSDA-1.4/RSDA/data/facedata.rda |binary RSDA-1.4/RSDA/data/int_prost_test.rda |binary RSDA-1.4/RSDA/data/int_prost_train.rda |binary RSDA-1.4/RSDA/data/lynne1.rda |binary RSDA-1.4/RSDA/data/lynne2.rda |binary RSDA-1.4/RSDA/data/oils.rda |binary RSDA-1.4/RSDA/data/sodasXML.rda |only RSDA-1.4/RSDA/data/uscrime_int.rda |binary RSDA-1.4/RSDA/man/Cardiological.Rd | 56 + RSDA-1.4/RSDA/man/R2.L.Rd | 103 +-- RSDA-1.4/RSDA/man/R2.U.Rd | 103 +-- RSDA-1.4/RSDA/man/RMSE.L.Rd | 102 +-- RSDA-1.4/RSDA/man/RMSE.U.Rd | 102 +-- RSDA-1.4/RSDA/man/RSDA.Rd |only RSDA-1.4/RSDA/man/SDS.to.RSDA.Rd | 60 -- RSDA-1.4/RSDA/man/SODAS.to.RSDA.Rd | 65 +- RSDA-1.4/RSDA/man/StudentsGrades.Rd | 64 -- RSDA-1.4/RSDA/man/USCrime.Rd | 32 - RSDA-1.4/RSDA/man/VeterinaryData.Rd | 64 +- RSDA-1.4/RSDA/man/abalone.Rd | 50 - RSDA-1.4/RSDA/man/calculate.probs.Rd |only RSDA-1.4/RSDA/man/centers.interval.Rd | 39 - RSDA-1.4/RSDA/man/cfa.CVPRealz.Rd |only RSDA-1.4/RSDA/man/cfa.Czz.Rd |only RSDA-1.4/RSDA/man/cfa.MatrixZ.Rd |only RSDA-1.4/RSDA/man/cfa.minmax.Rd |only RSDA-1.4/RSDA/man/cfa.scatterplot.Rd | 96 +-- RSDA-1.4/RSDA/man/cfa.totals.Rd |only RSDA-1.4/RSDA/man/classic.to.sym.Rd | 65 +- RSDA-1.4/RSDA/man/cor.Rd |only RSDA-1.4/RSDA/man/cov.Rd |only RSDA-1.4/RSDA/man/deter.coefficient.Rd | 111 +-- RSDA-1.4/RSDA/man/display.sym.table.Rd | 81 +- RSDA-1.4/RSDA/man/dist.vect.Rd | 45 - RSDA-1.4/RSDA/man/dist.vect.matrix.Rd | 41 - RSDA-1.4/RSDA/man/downarrow.matrix.Rd |only RSDA-1.4/RSDA/man/ex1_db2so.Rd | 27 RSDA-1.4/RSDA/man/ex_cfa1.Rd | 49 - RSDA-1.4/RSDA/man/ex_cfa2.Rd | 49 - RSDA-1.4/RSDA/man/example1.Rd | 164 ++--- RSDA-1.4/RSDA/man/example2.Rd | 50 - RSDA-1.4/RSDA/man/example3.Rd | 55 - RSDA-1.4/RSDA/man/example4.Rd | 53 - RSDA-1.4/RSDA/man/example5.Rd | 50 - RSDA-1.4/RSDA/man/example6.Rd | 50 - RSDA-1.4/RSDA/man/example7.Rd | 49 - RSDA-1.4/RSDA/man/facedata.Rd | 100 +-- RSDA-1.4/RSDA/man/format_continuous_var.Rd |only RSDA-1.4/RSDA/man/format_hist_var.Rd |only RSDA-1.4/RSDA/man/format_interval_var.Rd |only RSDA-1.4/RSDA/man/format_modal_var.Rd |only RSDA-1.4/RSDA/man/format_set_var.Rd |only RSDA-1.4/RSDA/man/format_sym_vars.Rd |only RSDA-1.4/RSDA/man/generate.sym.table.Rd | 91 +-- RSDA-1.4/RSDA/man/int_prost_test.Rd | 82 +- RSDA-1.4/RSDA/man/int_prost_train.Rd | 82 +- RSDA-1.4/RSDA/man/interscal.B.Rd |only RSDA-1.4/RSDA/man/interscal.Rd | 96 +-- RSDA-1.4/RSDA/man/interscal.delta.Rd |only RSDA-1.4/RSDA/man/interval.dist.Rd | 85 +- RSDA-1.4/RSDA/man/interval.dist.tobj.Rd | 89 +-- RSDA-1.4/RSDA/man/lynne1.Rd | 78 -- RSDA-1.4/RSDA/man/lynne2.Rd | 100 --- RSDA-1.4/RSDA/man/mean.sym.data.table.Rd |only RSDA-1.4/RSDA/man/median.sym.data.table.Rd |only RSDA-1.4/RSDA/man/neighbors.vertex.Rd | 49 - RSDA-1.4/RSDA/man/newSobject.Rd |only RSDA-1.4/RSDA/man/norm.vect.Rd | 41 - RSDA-1.4/RSDA/man/oils.Rd | 69 +- RSDA-1.4/RSDA/man/plotX.slice.Rd |only RSDA-1.4/RSDA/man/predictsym.glm.Rd | 124 ++-- RSDA-1.4/RSDA/man/predictsym.lm.Rd | 103 +-- RSDA-1.4/RSDA/man/print.sym.data.table.Rd |only RSDA-1.4/RSDA/man/process.continue.variable.Rd |only RSDA-1.4/RSDA/man/process.continuum.variable.Rd |only RSDA-1.4/RSDA/man/process.histogram.variable.Rd |only RSDA-1.4/RSDA/man/process.inter.cont.variable.Rd |only RSDA-1.4/RSDA/man/process.interval.variable.Rd |only RSDA-1.4/RSDA/man/process.modal.variable.Rd |only RSDA-1.4/RSDA/man/process.mult.nominal.modif.variable.Rd |only RSDA-1.4/RSDA/man/process.mult.nominal.variable.Rd |only RSDA-1.4/RSDA/man/process.nominal.variable.Rd |only RSDA-1.4/RSDA/man/process.set.variable.Rd |only RSDA-1.4/RSDA/man/read.sym.table.Rd | 209 ++----- RSDA-1.4/RSDA/man/rightarrow.matrix.Rd |only RSDA-1.4/RSDA/man/sd.Rd |only RSDA-1.4/RSDA/man/sodasXML.Rd |only RSDA-1.4/RSDA/man/sub-.sym.data.table.Rd |only RSDA-1.4/RSDA/man/sym.cfa.Rd | 39 - RSDA-1.4/RSDA/man/sym.circle.plot.Rd | 39 - RSDA-1.4/RSDA/man/sym.cor.Rd | 91 +-- RSDA-1.4/RSDA/man/sym.cov.Rd | 86 +-- RSDA-1.4/RSDA/man/sym.data.table.to.sym.var.Rd |only RSDA-1.4/RSDA/man/sym.glm.Rd | 135 ++-- RSDA-1.4/RSDA/man/sym.hclust.Rd | 94 +-- RSDA-1.4/RSDA/man/sym.histogram.pca.Rd | 82 +- RSDA-1.4/RSDA/man/sym.interval.pc.Rd | 95 +-- RSDA-1.4/RSDA/man/sym.interval.pc.limits.Rd | 53 - RSDA-1.4/RSDA/man/sym.interval.pca.Rd | 131 ++-- RSDA-1.4/RSDA/man/sym.kmean.Rd |only RSDA-1.4/RSDA/man/sym.lm.Rd | 124 +--- RSDA-1.4/RSDA/man/sym.lm.bi.Rd | 160 ++--- RSDA-1.4/RSDA/man/sym.mds.Rd | 98 +-- RSDA-1.4/RSDA/man/sym.mean.Rd | 92 +-- RSDA-1.4/RSDA/man/sym.median.Rd | 77 +- RSDA-1.4/RSDA/man/sym.normalize.Rd |only RSDA-1.4/RSDA/man/sym.obj.Rd | 115 +--- RSDA-1.4/RSDA/man/sym.scatterplot.Rd | 105 +-- RSDA-1.4/RSDA/man/sym.scatterplot.ggplot.Rd | 94 +-- RSDA-1.4/RSDA/man/sym.scatterplot3d.Rd | 87 +-- RSDA-1.4/RSDA/man/sym.sd.Rd | 79 +- RSDA-1.4/RSDA/man/sym.var.Rd | 112 +-- RSDA-1.4/RSDA/man/sym.variance.Rd | 76 +- RSDA-1.4/RSDA/man/uscrime_int.Rd | 68 +- RSDA-1.4/RSDA/man/var.Rd |only RSDA-1.4/RSDA/man/variance.princ.curve.Rd | 43 - RSDA-1.4/RSDA/man/vertex.interval.Rd | 36 - RSDA-1.4/RSDA/man/write.sym.table.Rd | 94 +-- RSDA-1.4/RSDA/tests |only 219 files changed, 7232 insertions(+), 5715 deletions(-)
Title: Bayesian Package for Network Changepoint Analysis
Description: Network changepoint analysis for undirected network data. The package implements a hidden Markov multilinear tenstor regression model (Park and Sohn, 2017, <http://jhp.snu.ac.kr/NetworkChange.pdf>). Functions for break number detection using the approximate marginal likelihood and WAIC are also provided.
Author: Jong Hee Park and Yunkyu Sohn
Maintainer: Jong Hee Park <jongheepark@snu.ac.kr>
Diff between NetworkChange versions 0.1 dated 2017-03-29 and 0.2 dated 2017-05-30
DESCRIPTION | 8 ++-- MD5 | 6 +-- R/NetworkChange.r | 91 +++++++++++++++++++++++++++++++++------------------ man/NetworkChange.Rd | 9 +---- 4 files changed, 68 insertions(+), 46 deletions(-)
Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearization of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow,Theory, vol. I: Methods and Applications; vol. II: Theory. 1953, New York: John Wiley and Sons), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y. G., 2015, <doi:10.1111/rssa.12116>). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>
Diff between vardpoor versions 0.9.2 dated 2017-05-15 and 0.9.4 dated 2017-05-30
DESCRIPTION | 15 ++++++++------- MD5 | 20 ++++++++++---------- R/domain.R | 7 +++++++ R/vardannual.R | 24 +++++++++++++++++------- R/vardchanges.R | 13 +++++-------- R/vardchangespoor.R | 10 +++------- R/vardcros.R | 11 +++-------- R/vardcrospoor.R | 11 ++++------- inst/NEWS | 4 ++++ man/vardannual.Rd | 8 ++++++-- man/vardpoor-package.Rd | 4 ++-- 11 files changed, 69 insertions(+), 58 deletions(-)
Title: Dependency-Free Access to PNG Image Files
Description: Read and write access to PNG image files using the LodePNG
library. The package has no external dependencies.
Author: Jon Clayden [aut, cre],
Lode Vandevenne [aut]
Maintainer: Jon Clayden <code@clayden.org>
Diff between loder versions 0.1.0 dated 2017-05-05 and 0.1.2 dated 2017-05-30
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- NEWS.md |only R/png.R | 4 ++-- README.md |only src/lodepng.c | 2 +- src/main.c | 25 +++++++++++++------------ 7 files changed, 26 insertions(+), 23 deletions(-)
Title: Visualizes Random Forests with Feature Contributions
Description: Form visualizations of high dimensional mapping structures of random forests and feature contributions.
Author: Soeren Havelund Welling
Maintainer: Soeren Havelund Welling <SORHAWELL@GMAIL.COM>
Diff between forestFloor versions 1.9.5 dated 2016-06-01 and 1.11.1 dated 2017-05-30
forestFloor-1.11.1/forestFloor/DESCRIPTION | 14 - forestFloor-1.11.1/forestFloor/MD5 | 56 +++--- forestFloor-1.11.1/forestFloor/NAMESPACE | 8 forestFloor-1.11.1/forestFloor/NEWS | 88 ++++++---- forestFloor-1.11.1/forestFloor/R/RcppExports.R | 2 forestFloor-1.11.1/forestFloor/R/convolute_ff.R | 2 forestFloor-1.11.1/forestFloor/R/fcol.R | 1 forestFloor-1.11.1/forestFloor/R/forestFloor_randomForest_multiClass.R | 30 +++ forestFloor-1.11.1/forestFloor/R/forestFloor_randomForest_regression.R | 36 +++- forestFloor-1.11.1/forestFloor/R/forestFloor_source.R | 49 ++++- forestFloor-1.11.1/forestFloor/R/importanceExportWrapper.R |only forestFloor-1.11.1/forestFloor/R/plot.forestFloor_multiClass.R | 8 forestFloor-1.11.1/forestFloor/R/plot.forestFloor_regression.R | 7 forestFloor-1.11.1/forestFloor/R/show3d.R | 23 ++ forestFloor-1.11.1/forestFloor/R/vec.plot.R | 2 forestFloor-1.11.1/forestFloor/inst/examples/scripts |only forestFloor-1.11.1/forestFloor/man/convolute_ff.Rd | 2 forestFloor-1.11.1/forestFloor/man/fcol.Rd | 37 +--- forestFloor-1.11.1/forestFloor/man/forestFloor.Rd | 51 +++++ forestFloor-1.11.1/forestFloor/man/importanceExportWrapper.Rd |only forestFloor-1.11.1/forestFloor/man/show3d.Rd | 2 forestFloor-1.11.1/forestFloor/src/RcppExports.cpp | 17 + forestFloor-1.11.1/forestFloor/tests/stdUsage.R | 25 ++ forestFloor-1.11.1/forestFloor/tests/testCaret.R |only forestFloor-1.11.1/forestFloor/tests/testMultiClass.cpp.R | 1 forestFloor-1.9.5/forestFloor/inst/examples/Scripts |only forestFloor-1.9.5/forestFloor/inst/examples/ffgradientBoost.R |only forestFloor-1.9.5/forestFloor/inst/examples/showpartial.R |only 28 files changed, 331 insertions(+), 130 deletions(-)
Title: Dynamic Estimation of Group-Level Opinion
Description: Fit dynamic group-level IRT and MRP models from individual or
aggregated item response data. This package handles common preprocessing
tasks and extends functions for inspecting results, poststratification, and
quick iteration over alternative models.
Author: James Dunham [aut, cre],
Devin Caughey [aut],
Christopher Warshaw [aut]
Maintainer: James Dunham <james@jdunham.io>
Diff between dgo versions 0.2.9 dated 2017-05-22 and 0.2.10 dated 2017-05-30
dgo-0.2.10/dgo/DESCRIPTION | 19 +++++------ dgo-0.2.10/dgo/MD5 | 29 +++++++++--------- dgo-0.2.10/dgo/NAMESPACE | 2 - dgo-0.2.10/dgo/NEWS.md | 19 ++++++++--- dgo-0.2.10/dgo/R/dichotomize_item_responses.r | 12 ++++++- dgo-0.2.10/dgo/R/package.R | 2 - dgo-0.2.10/dgo/README.md | 18 ++++++----- dgo-0.2.10/dgo/data/datalist |only dgo-0.2.10/dgo/data/toy_dgirt_in.rda |binary dgo-0.2.10/dgo/data/toy_dgirtfit.rda |binary dgo-0.2.10/dgo/tests/testthat/dgirt_ret.Rds |only dgo-0.2.10/dgo/tests/testthat/dgmrp_ret.Rds |only dgo-0.2.10/dgo/tests/testthat/test-dgirtfit.r | 37 ++++------------------- dgo-0.2.10/dgo/tests/testthat/test-dichotomize.r | 36 +++++++++++----------- dgo-0.2.10/dgo/tools |only dgo-0.2.9/dgo/R/RcppExports.R |only dgo-0.2.9/dgo/src |only 17 files changed, 85 insertions(+), 89 deletions(-)
Title: Import, Manipulate and Explore the Results of an Antares
Simulation
Description: Import, manipulate and explore results generated by Antares, a
powerful software developed by RTE to simulate and study electric power systems
(more information about Antares here: <https://antares.rte-france.com>).
Author: Francois Guillem [aut, cre],
Jalal-Edine ZAWAM [ctb],
RTE [cph]
Maintainer: Francois Guillem <francois.guillem@rte-france.com>
Diff between antaresRead versions 1.1.2 dated 2017-04-20 and 1.1.3 dated 2017-05-30
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 7 +++++++ R/importInput.R | 2 ++ 4 files changed, 16 insertions(+), 7 deletions(-)
Title: Computation of v Values for U and Copula C(U, v)
Description: Computation the value of one of two uniformly
distributed marginals if the copula probability value is known
and the value of the second marginal is also known.
Computation and plotting corresponding cumulative
distribution function or survival function.
Author: Josef Brejcha
Maintainer: Josef Brejcha <brchjo@gmail.com>
Diff between vfcp versions 0.1.0 dated 2017-05-15 and 1.1.0 dated 2017-05-30
DESCRIPTION | 10 +++++----- MD5 | 29 ++++++++++++++++++++--------- NAMESPACE | 4 ++++ NEWS |only R/vfcfaj.R | 2 +- R/vfex.R |only R/vfmrg.R |only R/vfplot.R | 7 +++++-- R/vfploto.R |only R/vfprifo.R |only R/vfpripo.R |only man/vfalihaq.Rd | 18 ++++++++++++++++++ man/vfcp-package.Rd | 4 ++-- man/vfex.Rd |only man/vffgm.Rd | 27 +++++++++++++++++++++++---- man/vfjoe.Rd | 17 +++++++++++++++++ man/vfmrg.Rd |only man/vfplot.Rd | 1 + man/vfploto.Rd |only man/vfprifo.Rd |only man/vfpripo.Rd |only 21 files changed, 96 insertions(+), 23 deletions(-)
Title: Discrete-Event Simulation for R
Description: A process-oriented and trajectory-based Discrete-Event Simulation
(DES) package for R. It is designed as a generic yet powerful framework. The
architecture encloses a robust and fast simulation core written in C++ with
automatic monitoring capabilities. It provides a rich and flexible R API that
revolves around the concept of trajectory, a common path in the simulation
model for entities of the same type.
Author: Iñaki Ucar [aut, cph, cre],
Bart Smeets [aut, cph]
Maintainer: Iñaki Ucar <i.ucar86@gmail.com>
Diff between simmer versions 3.6.1 dated 2017-03-31 and 3.6.2 dated 2017-05-30
simmer-3.6.1/simmer/inst/doc/A-introduction.R |only simmer-3.6.1/simmer/inst/doc/A-introduction.Rmd |only simmer-3.6.1/simmer/inst/doc/A-introduction.html |only simmer-3.6.1/simmer/inst/doc/B-terminology.R |only simmer-3.6.1/simmer/inst/doc/B-terminology.Rmd |only simmer-3.6.1/simmer/inst/doc/B-terminology.html |only simmer-3.6.1/simmer/inst/doc/C-trajectories.R |only simmer-3.6.1/simmer/inst/doc/C-trajectories.Rmd |only simmer-3.6.1/simmer/inst/doc/C-trajectories.html |only simmer-3.6.1/simmer/inst/doc/D-bank-1.R |only simmer-3.6.1/simmer/inst/doc/D-bank-1.Rmd |only simmer-3.6.1/simmer/inst/doc/D-bank-1.html |only simmer-3.6.1/simmer/inst/doc/E-simpy.R |only simmer-3.6.1/simmer/inst/doc/E-simpy.Rmd |only simmer-3.6.1/simmer/inst/doc/E-simpy.html |only simmer-3.6.1/simmer/inst/doc/F-queueing-systems.R |only simmer-3.6.1/simmer/inst/doc/F-queueing-systems.Rmd |only simmer-3.6.1/simmer/inst/doc/F-queueing-systems.html |only simmer-3.6.1/simmer/inst/doc/G-ctmc.R |only simmer-3.6.1/simmer/inst/doc/G-ctmc.Rmd |only simmer-3.6.1/simmer/inst/doc/G-ctmc.html |only simmer-3.6.1/simmer/vignettes/A-introduction.Rmd |only simmer-3.6.1/simmer/vignettes/B-terminology.Rmd |only simmer-3.6.1/simmer/vignettes/C-trajectories.Rmd |only simmer-3.6.1/simmer/vignettes/D-bank-1.Rmd |only simmer-3.6.1/simmer/vignettes/E-simpy.Rmd |only simmer-3.6.1/simmer/vignettes/F-queueing-systems.Rmd |only simmer-3.6.1/simmer/vignettes/G-ctmc.Rmd |only simmer-3.6.2/simmer/DESCRIPTION | 8 simmer-3.6.2/simmer/MD5 | 114 ++--- simmer-3.6.2/simmer/NEWS.md | 13 simmer-3.6.2/simmer/R/RcppExports.R | 180 ++++---- simmer-3.6.2/simmer/R/simulator-methods.R | 2 simmer-3.6.2/simmer/R/trajectory-activities.R | 17 simmer-3.6.2/simmer/R/trajectory-methods.R | 2 simmer-3.6.2/simmer/R/trajectory.R | 209 +++++----- simmer-3.6.2/simmer/R/utils.R | 27 + simmer-3.6.2/simmer/build/vignette.rds |binary simmer-3.6.2/simmer/inst/doc/simmer-01-introduction.R |only simmer-3.6.2/simmer/inst/doc/simmer-01-introduction.Rmd |only simmer-3.6.2/simmer/inst/doc/simmer-01-introduction.html |only simmer-3.6.2/simmer/inst/doc/simmer-02-terminology.R |only simmer-3.6.2/simmer/inst/doc/simmer-02-terminology.Rmd |only simmer-3.6.2/simmer/inst/doc/simmer-02-terminology.html |only simmer-3.6.2/simmer/inst/doc/simmer-03-trajectories.R |only simmer-3.6.2/simmer/inst/doc/simmer-03-trajectories.Rmd |only simmer-3.6.2/simmer/inst/doc/simmer-03-trajectories.html |only simmer-3.6.2/simmer/inst/doc/simmer-04-bank-1.R |only simmer-3.6.2/simmer/inst/doc/simmer-04-bank-1.Rmd |only simmer-3.6.2/simmer/inst/doc/simmer-04-bank-1.html |only simmer-3.6.2/simmer/inst/doc/simmer-05-simpy.R |only simmer-3.6.2/simmer/inst/doc/simmer-05-simpy.Rmd |only simmer-3.6.2/simmer/inst/doc/simmer-05-simpy.html |only simmer-3.6.2/simmer/inst/doc/simmer-06-queueing-systems.R |only simmer-3.6.2/simmer/inst/doc/simmer-06-queueing-systems.Rmd |only simmer-3.6.2/simmer/inst/doc/simmer-06-queueing-systems.html |only simmer-3.6.2/simmer/inst/doc/simmer-07-ctmc.R |only simmer-3.6.2/simmer/inst/doc/simmer-07-ctmc.Rmd |only simmer-3.6.2/simmer/inst/doc/simmer-07-ctmc.html |only simmer-3.6.2/simmer/man/Extract.trajectory.Rd | 2 simmer-3.6.2/simmer/man/add_generator.Rd | 2 simmer-3.6.2/simmer/man/batch.Rd | 3 simmer-3.6.2/simmer/man/rollback.Rd | 2 simmer-3.6.2/simmer/man/select.Rd | 10 simmer-3.6.2/simmer/src/RcppExports.cpp | 46 +- simmer-3.6.2/simmer/src/activity.h | 198 ++++----- simmer-3.6.2/simmer/src/init.c | 189 ++++----- simmer-3.6.2/simmer/src/policy.cpp | 15 simmer-3.6.2/simmer/src/policy.h | 27 - simmer-3.6.2/simmer/src/process.cpp | 2 simmer-3.6.2/simmer/src/simmer_rcpp.cpp | 32 + simmer-3.6.2/simmer/src/simulator.h | 20 simmer-3.6.2/simmer/src/stats.h | 11 simmer-3.6.2/simmer/tests/testthat/test-simmer.R | 30 + simmer-3.6.2/simmer/tests/testthat/test-trajectory-batch-separate.R | 4 simmer-3.6.2/simmer/tests/testthat/test-trajectory-rollback.R | 2 simmer-3.6.2/simmer/tests/testthat/test-trajectory-setprioritization.R | 10 simmer-3.6.2/simmer/tests/testthat/test-trajectory-timeout.R | 14 simmer-3.6.2/simmer/tests/testthat/test-trajectory.R | 6 simmer-3.6.2/simmer/vignettes/simmer-01-introduction.Rmd |only simmer-3.6.2/simmer/vignettes/simmer-02-terminology.Rmd |only simmer-3.6.2/simmer/vignettes/simmer-03-trajectories.Rmd |only simmer-3.6.2/simmer/vignettes/simmer-04-bank-1.Rmd |only simmer-3.6.2/simmer/vignettes/simmer-05-simpy.Rmd |only simmer-3.6.2/simmer/vignettes/simmer-06-queueing-systems.Rmd |only simmer-3.6.2/simmer/vignettes/simmer-07-ctmc.Rmd |only 86 files changed, 670 insertions(+), 527 deletions(-)
Title: Extract Shared Variation in Collections of Data Sets Using
Regression Models
Description: The algorithm extracts shared variation from a collection of data sets using regression models.
Author: Jussi Korpela [aut, cre], Andreas Henelius [aut], Finnish Institute of Occupational Health [cph]
Maintainer: Jussi Korpela <jussi.korpela@iki.fi>
Diff between cocoreg versions 0.1.0 dated 2016-05-04 and 0.1.1 dated 2017-05-30
DESCRIPTION | 11 +- MD5 | 176 +++++++++++++++++++-------------------- NAMESPACE | 2 NEWS.md |only R/cocoreg.R | 20 ++-- R/common_plots.R | 58 ++++++------ R/common_tools.R | 14 +-- R/synthetic_datasets.R | 30 +++--- README.md | 22 ++++ build/vignette.rds |binary inst/doc/cocoreg-basics.html | 89 +++++++++++-------- man/BGFA_cocoreg_interface.Rd | 9 - man/BGFA_joint_info.Rd | 5 - man/PCA_cocoreg_interface.Rd | 11 +- man/RGCCA_cocoreg_interface.Rd | 9 - man/SCA_cocoreg_interface.Rd | 15 +-- man/add_notches.Rd | 3 man/apply_dc_meta.Rd | 5 - man/average_R2_dflst.Rd | 3 man/cocoreg.Rd | 8 - man/cocoreg_by_path.Rd | 3 man/compose.Rd | 7 - man/compose_all.Rd | 3 man/create_Z_linear.Rd | 5 - man/create_mappings.Rd | 3 man/create_syn_data_puvar.Rd | 3 man/create_syn_data_toy.Rd | 6 - man/create_syn_data_uds.Rd | 3 man/create_syn_data_uvar.Rd | 7 - man/create_syndata_mv.Rd | 7 - man/create_syndata_pwl.Rd | 3 man/cshift.Rd | 9 - man/data_collections2ggdf.Rd | 4 man/data_matrix_rmse.Rd | 6 - man/dc_variability.Rd | 3 man/df_ggplot_melt.Rd | 4 man/df_scale.Rd | 3 man/df_scale_ols.Rd | 4 man/dflst2array.Rd | 3 man/dflst2df.Rd | 5 - man/dflst2dfmelt.Rd | 3 man/dflst_add_ds.Rd | 3 man/dflst_dsnames2varnames.Rd | 3 man/dflst_pca.Rd | 3 man/dl_remove_NA.Rd | 3 man/dl_scale.Rd | 3 man/ds_variability.Rd | 3 man/figures |only man/generate_mapping_function.Rd | 3 man/generate_paths.Rd | 5 - man/generate_paths_cyclic.Rd | 3 man/generate_paths_noncyclic.Rd | 5 - man/get_dc_meta.Rd | 5 - man/get_range_datalist.Rd | 3 man/get_starting_dataset.Rd | 3 man/ggcompare_dclst.Rd | 3 man/ggplot_dclst.Rd | 4 man/ggplot_df.Rd | 4 man/ggplot_dflst.Rd | 3 man/make_data_gauss_2d.Rd | 3 man/mapping_glmnet.Rd | 3 man/mapping_lm.Rd | 3 man/mapping_lmridge.Rd | 3 man/mapping_pcr.Rd | 3 man/mapping_rf.Rd | 3 man/mapping_rlm.Rd | 3 man/mapping_svm.Rd | 3 man/mapping_svm_sigmoid.Rd | 3 man/mappings_R2_matrix.Rd | 6 - man/matrix_variability.Rd | 3 man/nplst_reorder_grid.Rd | 3 man/pathify.Rd | 5 - man/pdf |only man/rename_variables.Rd | 5 - man/repmat.Rd | 3 man/rmse.Rd | 5 - man/rotation_matrix.Rd | 3 man/row_suffle_variability.Rd | 9 - man/se.Rd | 3 man/ss.Rd | 3 man/svm_sigmoid.Rd | 3 man/to_unit_vec.Rd | 3 man/traverse_nested_list.Rd | 9 - man/validate_data.Rd | 3 man/var_explained.Rd | 3 man/variability_components.Rd | 4 man/variation_shared_by.Rd | 22 ++-- man/vecnorm.Rd | 5 - man/vector_variability.Rd | 3 man/wrapper_BGFA.Rd | 9 - 90 files changed, 377 insertions(+), 405 deletions(-)
Title: Subgroup Identification Based on Differential Effect Search
Description: Provides function to apply "Subgroup Identification based on Differential Effect Search" (SIDES) method proposed by Lipkovich et al. (2011) <doi:10.1002/sim.4289>.
Author: Marie-Karelle Riviere
Maintainer: Marie-Karelle Riviere <eldamjh@gmail.com>
Diff between SIDES versions 1.10 dated 2017-01-20 and 1.11 dated 2017-05-30
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- man/SIDES-package.Rd | 4 ++-- man/SIDES.Rd | 14 ++++++++++---- man/simulation_SIDES.Rd | 18 +++++++++++++----- 5 files changed, 33 insertions(+), 19 deletions(-)
Title: Mini Charts for Interactive Maps
Description: Add and modify small charts on an interactive map created with
package 'leaflet'. These charts can be used to represent at same time multiple
variables on a single map.
Author: Francois Guillem [aut, cre],
Jalal-Edine ZAWAM [ctb],
RTE [cph]
Maintainer: Francois Guillem <francois.guillem@rte-france.com>
Diff between leaflet.minicharts versions 0.3.0 dated 2017-05-22 and 0.3.1 dated 2017-05-30
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 6 ++++++ inst/doc/introduction.html | 28 ++++++++++++++-------------- 4 files changed, 27 insertions(+), 21 deletions(-)
More information about leaflet.minicharts at CRAN
Permanent link
Title: A Package for Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data, in
particular representation, manipulation and simulation of multi state
data - the Lexis suite of functions, which includes interfaces to
'mstate', 'etm' and 'cmprsk' packages.
Also contains functions for Age-Period-Cohort and Lee-Carter
modeling and a function for interval censored data and some useful
functions for tabulation and plotting, as well as a number of
epidemiological data sets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <b@bxc.dk>
Diff between Epi versions 2.12 dated 2017-04-16 and 2.15 dated 2017-05-30
CHANGES | 19 +++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 33 +++++++++++++++++++-------------- NAMESPACE | 5 +++++ R/Ns.r | 2 +- R/erl.R | 21 ++++++++++++++++++--- R/plotCIF.R |only R/stackedCIF.R |only R/xgrep.R |only build/vignette.rds |binary inst/doc/Follow-up.R | 1 - inst/doc/Follow-up.pdf |binary inst/doc/simLexis.R | 2 +- inst/doc/simLexis.pdf |binary inst/doc/yll.R | 28 ++++++++++++++++------------ inst/doc/yll.pdf |binary man/ci.cum.Rd | 21 ++++++++++++++------- man/ci.lin.Rd | 8 ++++---- man/lgrep.Rd |only man/plotCIF.Rd |only 20 files changed, 101 insertions(+), 47 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-05 0.0.1
Title: Tracking the Progress of Mc*pply with Progress Bar
Description: A light-weight package helps you track and visualize
the progress of parallel version of vectorized R functions (mc*apply).
Parallelization (mc.core > 1) works only on *nix (Linux, Unix such as macOS) system due to
the lack of fork() functionality, which is essential for mc*apply, on Windows.
Author: Kevin Kuang (aut), Francesco Napolitano (ctb)
Maintainer: Kevin kuang <kvn.kuang@mail.utoronto.ca>
Diff between pbmcapply versions 1.2.1 dated 2017-02-05 and 1.2.2 dated 2017-05-30
DESCRIPTION | 9 ++++----- MD5 | 12 ++++++------ R/pbmclapply.R | 36 ++++++++++++++++++++++++++++++++---- R/pbmcmapply.R | 36 ++++++++++++++++++++++++++++++++---- R/utils.R | 20 +++++++++++++++++++- man/pbmclapply.Rd | 16 ++++++++++++---- man/pbmcmapply.Rd | 16 ++++++++++++---- 7 files changed, 117 insertions(+), 28 deletions(-)
Title: Optimal and Fast Univariate Clustering
Description: A fast dynamic programming algorithmic framework to
achieve optimal univariate k-means, k-median, and k-segments
clustering. Minimizing the sum of respective within-cluster
distances, the algorithms guarantee optimality and
reproducibility. Their advantage over heuristic clustering
algorithms in efficiency and accuracy is increasingly pronounced
as the number of clusters k increases. Weighted k-means and
unweighted k-segments algorithms can also optimally segment time
series and perform peak calling. An auxiliary function generates
histograms that are adaptive to patterns in data. This package
provides a powerful alternative to heuristic methods for
univariate data analysis.
Author: Joe Song [aut, cre], Haizhou Wang [aut]
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between Ckmeans.1d.dp versions 4.0.1 dated 2017-02-16 and 4.2.0 dated 2017-05-30
DESCRIPTION | 27 ++++--- MD5 | 52 +++++++------ NAMESPACE | 16 ++++ NEWS | 43 ++++++++++- R/Ckmeans.1d.dp.R | 131 +++++++++++++++++++++-------------- R/print.R |only R/visualize.R | 74 ++++++++++++++++++- build/vignette.rds |binary inst/doc/Ckmeans.1d.dp.html | 20 ++--- inst/doc/ahist.html | 18 ++-- man/Ckmeans.1d.dp-package.Rd | 15 ++-- man/Ckmeans.1d.dp.Rd | 124 ++++++++++++++++++++++++++++----- man/ahist.Rd | 27 +++++-- man/plot.Ckmeans.1d.dp.Rd | 29 ++++++- man/plotBIC.Rd | 20 +++-- man/print.Ckmeans.1d.dp.Rd | 41 ++++++---- src/Ckmeans.1d.dp.cpp | 62 ++++++++++------ src/Ckmeans.1d.dp.h | 127 ++++++++++++++++----------------- src/Ckmeans.1d.dp_main.cpp | 64 +++++++++++++++-- src/dynamic_prog.cpp | 96 ++++++++++++++++++++++--- src/fill_SMAWK.cpp | 66 ++++++++++++----- src/fill_log_linear.cpp | 14 ++- src/fill_quadratic.cpp | 10 ++ src/select_levels.cpp | 8 +- src/weighted_select_levels.cpp | 23 ++++-- src/within_cluster.h |only tests/testthat/test_Ckmeans.1d.dp.R | 2 tests/testthat/test_Ckmedian.1d.dp.R |only tests/testthat/test_Cksegs.1d.dp.R |only 29 files changed, 807 insertions(+), 302 deletions(-)
Title: Advanced Fire History Analysis in R
Description: Basic tools to analyze forest fire history data (e.g. FHX2) in R.
Author: Steven Malevich [aut, cre],
Christopher Guiterman [ctb],
Ellis Margolis [ctb]
Maintainer: Steven Malevich <malevich@email.arizona.edu>
Diff between burnr versions 0.1.2 dated 2017-02-08 and 0.2.0 dated 2017-05-30
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Title: Graph-Constrained Regression with Enhanced Regularization
Parameters Selection
Description: Provides graph-constrained regression methods in which
regularization parameters are selected automatically via estimation of
equivalent Linear Mixed Model formulation. 'riPEER' (ridgified Partially
Empirical Eigenvectors for Regression) method employs a penalty term being
a linear combination of graph-originated and ridge-originated penalty terms,
whose two regularization parameters are ML estimators from corresponding
Linear Mixed Model solution; a graph-originated penalty term allows imposing
similarity between coefficients based on graph information given whereas
additional ridge-originated penalty term facilitates parameters estimation:
it reduces computational issues arising from singularity in a graph-originated
penalty matrix and yields plausible results in situations when graph information
is not informative. 'riPEERc' (ridgified Partially Empirical Eigenvectors
for Regression with constant) method utilizes addition of a diagonal matrix
multiplied by a predefined (small) scalar to handle the non-invertibility of
a graph Laplacian matrix. 'vrPEER' (variable reducted PEER) method performs
variable-reduction procedure to handle the non-invertibility of a graph
Laplacian matrix.
Author: Marta Karas [aut, cre], Damian Brzyski [ctb], Jaroslaw Harezlak [ctb]
Maintainer: Marta Karas <marta.karass@gmail.com>
Diff between mdpeer versions 0.1.0 dated 2016-11-25 and 1.0.1 dated 2017-05-30
mdpeer-0.1.0/mdpeer/R/A2L.R |only mdpeer-0.1.0/mdpeer/R/GraceTest_C.R |only mdpeer-0.1.0/mdpeer/R/RidgePEER.R |only mdpeer-0.1.0/mdpeer/R/RidgePEER_cv.R |only mdpeer-0.1.0/mdpeer/R/crPEER.R |only mdpeer-0.1.0/mdpeer/R/dist2sim.R |only mdpeer-0.1.0/mdpeer/R/vizumat.R |only mdpeer-0.1.0/mdpeer/inst/doc/Introduction_and_usage_examples.R |only mdpeer-0.1.0/mdpeer/inst/doc/Introduction_and_usage_examples.Rmd |only mdpeer-0.1.0/mdpeer/inst/doc/Introduction_and_usage_examples.html |only mdpeer-0.1.0/mdpeer/man/RidgePEER.Rd |only mdpeer-0.1.0/mdpeer/man/RidgePEER.cv.Rd |only mdpeer-0.1.0/mdpeer/man/crPEER.Rd |only mdpeer-0.1.0/mdpeer/man/dist2sim.Rd |only mdpeer-0.1.0/mdpeer/vignettes/Introduction_and_usage_examples.Rmd |only mdpeer-1.0.1/mdpeer/DESCRIPTION | 32 + mdpeer-1.0.1/mdpeer/MD5 | 50 +- mdpeer-1.0.1/mdpeer/NAMESPACE | 10 mdpeer-1.0.1/mdpeer/R/Adj2Lap.R |only mdpeer-1.0.1/mdpeer/R/L2Lnormalized.R | 18 mdpeer-1.0.1/mdpeer/R/mdpeer.R | 38 - mdpeer-1.0.1/mdpeer/R/riPEER.R |only mdpeer-1.0.1/mdpeer/R/riPEERc.R |only mdpeer-1.0.1/mdpeer/R/vizumat2.R |only mdpeer-1.0.1/mdpeer/R/vrPEER.R | 216 ++++------ mdpeer-1.0.1/mdpeer/README.md | 14 mdpeer-1.0.1/mdpeer/build/vignette.rds |binary mdpeer-1.0.1/mdpeer/inst/doc/Intro_and_usage_examples.R |only mdpeer-1.0.1/mdpeer/inst/doc/Intro_and_usage_examples.Rmd |only mdpeer-1.0.1/mdpeer/inst/doc/Intro_and_usage_examples.html |only mdpeer-1.0.1/mdpeer/man/Adj2Lap.Rd | 19 mdpeer-1.0.1/mdpeer/man/L2L.normalized.Rd | 21 mdpeer-1.0.1/mdpeer/man/mdpeer.Rd | 39 - mdpeer-1.0.1/mdpeer/man/riPEER.Rd |only mdpeer-1.0.1/mdpeer/man/riPEERc.Rd |only mdpeer-1.0.1/mdpeer/man/vizu.mat.Rd | 153 ++++--- mdpeer-1.0.1/mdpeer/man/vizu.mat.factor.Rd |only mdpeer-1.0.1/mdpeer/man/vrPEER.Rd | 130 ++---- mdpeer-1.0.1/mdpeer/vignettes/Intro_and_usage_examples.Rmd |only 39 files changed, 375 insertions(+), 365 deletions(-)
Title: Spatial Terms in Generalized Additive Models for Location Scale
and Shape Models
Description: It allows us to fit Gaussian Markov Random Field within the
Generalized Additive Models for Location Scale and Shape algorithms.
Author: Fernanda De Bastiani [aut, cre, cph],
Mikis Stasinopoulos [aut],
Bob Rigby [aut]
Maintainer: Fernanda De Bastiani <fernandadebastiani@gmail.com>
Diff between gamlss.spatial versions 1.3.1 dated 2016-06-19 and 1.3.2 dated 2017-05-30
DESCRIPTION | 30 - MD5 | 84 ++- NAMESPACE | 42 - R/MRF.R | 1094 +++++++++++++++++++++--------------------- R/MRFA.R | 418 ++++++++-------- R/extraFunctions.R | 3 R/gmrf-for-gamlss.R | 448 ++++++++--------- R/mrf-for-gamlss.R | 360 ++++++------- build |only inst |only man/MRF.Rd | 251 ++++----- man/draw.polys.Rd | 204 ++++--- man/gamlss.gmrf.Rd | 7 man/gamlss.spatial-package.Rd | 2 vignettes |only 15 files changed, 1512 insertions(+), 1431 deletions(-)
More information about gamlss.spatial at CRAN
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