Title: Linear Regression using I-Priors
Description: Provides methods to perform and analyse I-prior regression models.
Estimation is mainly done via an EM algorithm, but there is flexibility in
using any optimiser.
Author: Haziq Jamil [aut, cre]
Maintainer: Haziq Jamil <haziq.jamil@gmail.com>
Diff between iprior versions 0.6.4 dated 2017-02-14 and 0.6.5 dated 2017-06-11
iprior-0.6.4/iprior/src/eigenCpp.cpp |only iprior-0.6.4/iprior/src/fastSquare.cpp |only iprior-0.6.5/iprior/DESCRIPTION | 8 iprior-0.6.5/iprior/MD5 | 65 +-- iprior-0.6.5/iprior/NAMESPACE | 13 iprior-0.6.5/iprior/NEWS.md | 10 iprior-0.6.5/iprior/R/Kernel_functions.R | 278 ++++++++------ iprior-0.6.5/iprior/R/Kernel_loader.R | 92 +--- iprior-0.6.5/iprior/R/Namespace.R | 4 iprior-0.6.5/iprior/R/RcppExports.R | 44 ++ iprior-0.6.5/iprior/R/Utilities.R | 52 ++ iprior-0.6.5/iprior/R/iprior.R | 74 ++- iprior-0.6.5/iprior/R/ipriorEM.R | 10 iprior-0.6.5/iprior/R/ipriorEM_helper.R | 48 +- iprior-0.6.5/iprior/R/ipriorOptim.R | 2 iprior-0.6.5/iprior/R/ipriorVB.R |only iprior-0.6.5/iprior/R/predict.R | 22 - iprior-0.6.5/iprior/README.md | 21 - iprior-0.6.5/iprior/build/vignette.rds |binary iprior-0.6.5/iprior/inst/doc/iprior_vignette.html | 50 +- iprior-0.6.5/iprior/inst/doc/kernel_matrix.html | 4 iprior-0.6.5/iprior/man/eigenCpp.Rd |only iprior-0.6.5/iprior/man/fastSquare.Rd |only iprior-0.6.5/iprior/man/fastVDiag.Rd |only iprior-0.6.5/iprior/man/iprior.Rd | 6 iprior-0.6.5/iprior/man/ipriorColPal.Rd | 3 iprior-0.6.5/iprior/man/ipriorOptim.Rd | 2 iprior-0.6.5/iprior/man/is.ipriorMod.Rd |only iprior-0.6.5/iprior/man/kernL.Rd | 2 iprior-0.6.5/iprior/man/kernel.Rd | 7 iprior-0.6.5/iprior/src/EigenCpp.cpp |only iprior-0.6.5/iprior/src/FastSquare.cpp |only iprior-0.6.5/iprior/src/RcppExports.cpp | 11 iprior-0.6.5/iprior/src/fastSquareRoot.cpp |only iprior-0.6.5/iprior/src/fastVDiag.cpp | 26 - iprior-0.6.5/iprior/src/packagename_init.c |only iprior-0.6.5/iprior/tests/testthat/Rplots.pdf |binary iprior-0.6.5/iprior/tests/testthat/test-1kernel.R | 5 iprior-0.6.5/iprior/tests/testthat/test-7iprior_methods.R | 8 39 files changed, 530 insertions(+), 337 deletions(-)
Title: Custom Inputs Widgets for Shiny
Description: Some custom inputs widgets to use in Shiny applications, like a toggle switch to replace checkboxes. And other components to pimp your apps.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
Silvio Moreto [ctb, cph] (bootstrap-select),
Ana Carolina [ctb, cph] (bootstrap-select),
caseyjhol [ctb, cph] (bootstrap-select),
Matt Bryson [ctb, cph] (bootstrap-select),
t0xicCode [ctb, cph] (bootstrap-select),
Mattia Larentis [ctb, cph] (Bootstrap Switch),
Emanuele Marchi [ctb, cph] (Bootstrap Switch),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Flatlogic [cph] (Awesome Bootstrap Checkbox),
mouse0270 [ctb, cph] (Material Design Switch),
Tristan Edwards [ctb, cph] (SweetAlert),
Fabian Lindfors [ctb, cph] (multi.js)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.2.0 dated 2017-03-23 and 0.3.0 dated 2017-06-11
DESCRIPTION | 16 + LICENSE | 26 ++ MD5 | 74 ++++---- NAMESPACE | 2 R/attachShinyWidgetsDep.R |only R/input-actiongroupbuttons.R | 3 R/input-awesomecheckbox.R | 30 --- R/input-awesomeradio.R | 14 - R/input-checkboxgroupbuttons.R | 10 - R/input-circlebutton.R | 15 - R/input-dropdown.R | 36 +++- R/input-materialswitch.R | 7 R/input-multi.R |only R/input-radiogroupbuttons.R | 10 - R/input-search.R | 7 R/input-selectpicker.R | 89 ---------- R/input-switch.R | 11 - R/progressBars.R | 7 R/shinyWidgetsGallery.R | 4 R/sweetalert.R | 7 README.md | 21 ++ inst/examples/garbage/dropdown_size.R |only inst/examples/garbage/dropdown_size2.R |only inst/examples/garbage/example_muli.R |only inst/examples/shinyWidgets/global.R | 16 + inst/examples/shinyWidgets/ui.R | 12 + inst/www/checkboxGroupButtons/checkboxGroupButtons-bindings.js | 24 ++ inst/www/checkboxGroupButtons/checkboxGroupButtons.css | 6 inst/www/circleButton/circle-button-old.css |only inst/www/circleButton/circle-button.css | 63 ++++--- inst/www/multi |only inst/www/progressBars/progressBars-bindings.js | 50 ++--- inst/www/radioGroupButtons/radioGroupButtons-bindings.js | 14 - inst/www/radioGroupButtons/radioGroupButtons.css | 4 inst/www/shinyWidgets-bindings.min.js |only inst/www/shinyWidgets.css |only inst/www/shinyWidgets.min.css |only inst/www/uglify.R |only man/circleButton.Rd | 5 man/dropdownButton.Rd | 26 ++ man/multiInput.Rd |only man/searchInput.Rd | 2 man/shinyWidgetsGallery.Rd | 4 43 files changed, 311 insertions(+), 304 deletions(-)
Title: Parameter Space Exploration with Latin Hypercubes
Description: Functions for creating Latin Hypercubes with
prescribed correlations and performing parameter space exploration.
Also implements the PLUE method.
Based on the package sensitivity, by Gilles Pujol,
Bertrand Iooss & Alexandre Janon.
Author: Andre Chalom, Paulo Inacio Knegt Lopez de Prado
Maintainer: Andre Chalom <andrechalom@gmail.com>
Diff between pse versions 0.4.6 dated 2016-07-19 and 0.4.7 dated 2017-06-11
DESCRIPTION | 10 +++++----- MD5 | 35 ++++++++++++++++++----------------- NAMESPACE | 2 +- R/LHScorcorr.R | 4 ++-- build/vignette.rds |binary inst/doc/multiple.pdf |binary inst/doc/pse_tutorial.pdf |binary man/LHS.Rd | 12 ++++++------ man/LHScorcorr.Rd | 1 - man/PLUE.Rd | 3 +-- man/accessors.Rd | 5 ++--- man/cv.Rd | 1 - man/external.Rd | 1 - man/machinefile.Rd | 1 - man/pic.Rd | 5 ++--- man/plots.Rd | 8 ++++---- man/sbma.Rd | 3 +-- man/target.sbma.Rd | 1 - src/init.c |only 19 files changed, 42 insertions(+), 50 deletions(-)
Title: Tools to Evaluate DNA Profile Evidence
Description: Tools to determine DNA profile Weight of Evidence.
For further information see the 'likeLTD' guide provided,
Balding, D.J. (2013) <DOI:10.1073/pnas.1219739110>,
or Steele, C.D. et al. (2016) <DOI:10.1515/sagmb-2016-0038>.
Author: David Balding, Adrian Timpson, Christopher Steele, Mayeul d'Avezac, James Hetherington.
Maintainer: Christopher Steele <c.steele.11@ucl.ac.uk>
Diff between likeLTD versions 6.2.0 dated 2017-03-28 and 6.2.1 dated 2017-06-11
DESCRIPTION | 8 - MD5 | 14 +- R/hypothesis-peaks.R | 7 + R/reports-peaks.R | 10 - inst/doc/likeLTDguide.pdf |binary inst/doc/usage.pdf |binary inst/extdata/example/exampleCSP.csv | 206 ++++++++++++++++++------------------ inst/extdata/example/exampleRef.csv | 6 - 8 files changed, 129 insertions(+), 122 deletions(-)
Title: Isotonic Proportional Hazards Model
Description: Nonparametric estimation of an isotonic covariate effect for proportional hazards model.
Author: Yunro Chung [cre], Anastasia Ivanova, Michael G. Hudgens and Jason P. Fine
Maintainer: Yunro Chung <ychung@fredhutch.org>
Diff between isoph versions 1.1 dated 2017-05-12 and 1.1.1 dated 2017-06-11
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/NR1.R | 1 - R/isoph.R | 48 ++++++++++++++++++++++++------------------------ man/isoph-package.Rd | 4 ++-- man/isoph.Rd | 6 +++--- 6 files changed, 38 insertions(+), 39 deletions(-)
Title: Fuzzy Forests
Description: Fuzzy forests, a new algorithm based on random forests,
is designed to reduce the bias seen in random forest feature selection
caused by the presence of correlated features. Fuzzy forests uses
recursive feature elimination random forests to select
features from separate blocks of correlated features where the
correlation within each block of features is high
and the correlation between blocks of features is low.
One final random forest is fit using the surviving features.
This package fits random forests using the 'randomForest' package and
allows for easy use of 'WGCNA' to split features into distinct blocks.
Author: Daniel Conn [aut, cre],
Tuck Ngun [aut],
Christina M. Ramirez [aut]
Maintainer: Daniel Conn <djconn17@gmail.com>
Diff between fuzzyforest versions 1.0.2 dated 2016-06-16 and 1.0.3 dated 2017-06-11
fuzzyforest-1.0.2/fuzzyforest/R/fuzzyforest_fit.R |only fuzzyforest-1.0.3/fuzzyforest/DESCRIPTION | 13 - fuzzyforest-1.0.3/fuzzyforest/MD5 | 47 ++--- fuzzyforest-1.0.3/fuzzyforest/NAMESPACE | 10 + fuzzyforest-1.0.3/fuzzyforest/R/ff.R |only fuzzyforest-1.0.3/fuzzyforest/R/fuzzy_forest_obj.R | 69 +++++++- fuzzyforest-1.0.3/fuzzyforest/R/fuzzyforest.R | 5 fuzzyforest-1.0.3/fuzzyforest/R/select_RF.R | 23 +- fuzzyforest-1.0.3/fuzzyforest/R/tuning_parameters.R | 4 fuzzyforest-1.0.3/fuzzyforest/R/wff.R |only fuzzyforest-1.0.3/fuzzyforest/man/Liver_Expr.Rd | 1 fuzzyforest-1.0.3/fuzzyforest/man/WGCNA_control.Rd | 1 fuzzyforest-1.0.3/fuzzyforest/man/ctg.Rd | 1 fuzzyforest-1.0.3/fuzzyforest/man/example_ff.Rd | 1 fuzzyforest-1.0.3/fuzzyforest/man/ff.Rd | 120 ++++++++------ fuzzyforest-1.0.3/fuzzyforest/man/ff.formula.Rd |only fuzzyforest-1.0.3/fuzzyforest/man/fuzzy_forest.Rd | 1 fuzzyforest-1.0.3/fuzzyforest/man/fuzzyforest.Rd | 1 fuzzyforest-1.0.3/fuzzyforest/man/iterative_RF.Rd | 1 fuzzyforest-1.0.3/fuzzyforest/man/modplot.Rd | 7 fuzzyforest-1.0.3/fuzzyforest/man/predict.fuzzy_forest.Rd | 66 +++++++ fuzzyforest-1.0.3/fuzzyforest/man/print.fuzzy_forest.Rd | 1 fuzzyforest-1.0.3/fuzzyforest/man/screen_control.Rd | 3 fuzzyforest-1.0.3/fuzzyforest/man/select_RF.Rd | 1 fuzzyforest-1.0.3/fuzzyforest/man/select_control.Rd | 3 fuzzyforest-1.0.3/fuzzyforest/man/wff.Rd | 30 ++- fuzzyforest-1.0.3/fuzzyforest/man/wff.formula.Rd |only 27 files changed, 301 insertions(+), 108 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-11 0.1
Title: The CDK Libraries Packaged for R
Description: An R interface to the Chemistry Development Kit, a Java library
for chemoinformatics. Given the size of the library itself, this package is
not expected to change very frequently. To make use of the CDK within R, it is
suggested that you use the 'rcdk' package. Note that it is possible to directly
interact with the CDK using 'rJava'. However 'rcdk' exposes functionality in a more
idiomatic way. The CDK library itself is released as LGPL and the sources can be
obtained from <https://github.com/cdk/cdk>.
Author: Rajarshi Guha [aut],
Zachary Charlop-Powers [cre],
CDK Project [ctb, cph] (CDK Java library contained in multiple jar
files)
Maintainer: Zachary Charlop-Powers <zach.charlop.powers@gmail.com>
Diff between rcdklibs versions 1.5.13 dated 2016-05-16 and 2.0 dated 2017-06-11
rcdklibs-1.5.13/rcdklibs/inst/cont/cdk-1.5.13.jar |only rcdklibs-2.0/rcdklibs/DESCRIPTION | 14 +++++++------- rcdklibs-2.0/rcdklibs/MD5 | 4 ++-- rcdklibs-2.0/rcdklibs/inst/cont/cdk-2.0.jar |only 4 files changed, 9 insertions(+), 9 deletions(-)