Title: Extended Multiplicative Signal Correction
Description: Background correction of spectral like data. Handles variations in
scaling, polynomial baselines, interferents, constituents and replicate variation.
Parameters for corrections are stored for further analysis, and spectra are corrected
accordingly.
Author: Kristian Hovde Liland
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between EMSC versions 0.8 dated 2016-04-24 and 0.8.2 dated 2017-07-14
DESCRIPTION | 12 ++++++------ MD5 | 25 ++++++++++++++----------- R/EMSC.R | 6 +++--- R/EMSC_results.R | 14 +++++++------- R/fishoil.R |only R/milk.R | 4 ++-- data/datalist | 1 + data/fishoil.rda |only man/EMSC.Rd | 7 +++---- man/EMSC_model.Rd | 1 - man/fishoil.Rd |only man/milk.Rd | 5 ++--- man/orthogonalVectors.Rd | 1 - man/plot.EMSC.Rd | 15 ++++++++------- man/predict.EMSC.Rd | 7 +++---- 15 files changed, 49 insertions(+), 49 deletions(-)
Title: Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis
Description: Provides functions for the Bayesian analysis of extreme value
models. The 'rust' package <https://cran.r-project.org/package=rust> is
used to simulate a random sample from the required posterior distribution.
The functionality of 'revdbayes' is similar to the 'evdbayes' package
<https://cran.r-project.org/package=evdbayes>, which uses Markov Chain
Monte Carlo ('MCMC') methods for posterior simulation. See the 'revdbayes'
website for more information, documentation and examples.
Author: Paul J. Northrop [aut, cre, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between revdbayes versions 1.1.0 dated 2017-03-14 and 1.2.0 dated 2017-07-14
DESCRIPTION | 20 - MD5 | 110 ++++--- NAMESPACE | 19 + NEWS.md | 76 ++--- R/RcppExports.R |only R/bayesplot.R | 26 + R/distributions.R | 417 +++++++--------------------- R/frequentist.R | 12 R/informative_priors.R |only R/misc.R | 74 ++++ R/predictive.R | 157 ++++------ R/priors.R | 415 +++++++++++++++++++++++++-- R/revdbayes.R | 46 +-- R/rposterior.R | 103 ++++-- R/rposterior_rcpp.R |only R/rprior.R | 10 R/sample_diagnostics.R | 92 +++--- R/zzz.R |only README.md | 21 + build/vignette.rds |binary inst/doc/revdbayes-predictive-vignette.R | 6 inst/doc/revdbayes-predictive-vignette.Rmd | 11 inst/doc/revdbayes-predictive-vignette.html | 18 - inst/doc/revdbayes-using-rcpp-vignette.R |only inst/doc/revdbayes-using-rcpp-vignette.Rmd |only inst/doc/revdbayes-using-rcpp-vignette.html |only inst/doc/revdbayes-vignette.R | 6 inst/doc/revdbayes-vignette.Rmd | 14 inst/doc/revdbayes-vignette.html | 23 - inst/include |only man/create_prior_xptr.Rd |only man/gev.Rd | 41 +- man/gev_beta.Rd |only man/gev_flat.Rd |only man/gev_flatflat.Rd |only man/gev_loglognorm.Rd |only man/gev_mdi.Rd |only man/gev_norm.Rd |only man/gev_prob.Rd |only man/gev_quant.Rd |only man/gom.Rd | 2 man/gp.Rd | 12 man/gp_beta.Rd |only man/gp_flat.Rd |only man/gp_flatflat.Rd |only man/gp_jeffreys.Rd |only man/gp_mdi.Rd |only man/gp_norm.Rd |only man/plot.evpost.Rd | 29 + man/pp_check.evpost.Rd | 22 - man/predict.evpost.Rd | 80 ++--- man/revdbayes.Rd | 41 +- man/rpost.Rd | 81 +++-- man/rpost_rcpp.Rd |only man/rprior_prob.Rd | 6 man/rprior_quant.Rd | 4 man/set_prior.Rd | 107 +++++-- man/summary.evpost.Rd | 13 src |only tests |only tools |only vignettes/revdbayes-predictive-vignette.Rmd | 14 vignettes/revdbayes-using-rcpp-vignette.Rmd |only vignettes/revdbayes-vignette.Rmd | 17 - vignettes/revdbayes.bib | 63 ++++ 65 files changed, 1354 insertions(+), 854 deletions(-)
Title: Calculate and Plot Decision Curves
Description: Decision curves are a useful tool to evaluate the population impact
of adopting a risk prediction instrument into clinical practice. Given one or more
instruments (risk models) that predict the probability of a binary outcome, this
package calculates and plots decision curves, which display estimates of the
standardized net benefit by the probability threshold used to categorize observations
as 'high risk.' Curves can be estimated using data from an observational cohort, or
from case-control studies when an estimate of the population outcome prevalence
is available. Confidence intervals calculated using the bootstrap can be displayed and
a wrapper function to calculate cross-validated curves using k-fold cross-validation is
also provided.
Author: Marshall Brown
Maintainer: Marshall Brown <mdbrown@fredhutch.org>
Diff between DecisionCurve versions 1.3 dated 2016-08-12 and 1.4 dated 2017-07-14
DESCRIPTION | 10 MD5 | 45 +-- NEWS | 7 R/Add_CostBenefit_Axis.R | 24 + R/cv_decision_curve.R | 35 +- R/decision_curve.R | 106 ++++---- R/plot_functions_main.R | 36 +- R/plot_functions_sub.R | 25 + R/subroutines.R | 56 +++- R/summary.decision_curve.R | 39 ++ README.md | 4 inst/notes/rsconnect |only inst/notes/tutorial.Rmd | 77 ++++- inst/notes/tutorial.html | 553 +++++++++++++++++++++++++++++++----------- man/Add_CostBenefit_Axis.Rd | 9 man/DecisionCurve-package.Rd | 7 man/cv_decision_curve.Rd | 15 - man/dcaData.Rd | 1 man/dcaData_cc.Rd | 1 man/decision_curve.Rd | 23 + man/plot_clinical_impact.Rd | 3 man/plot_decision_curve.Rd | 8 man/plot_roc_components.Rd | 1 man/summary.decision_curve.Rd | 3 24 files changed, 775 insertions(+), 313 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-11-29 0.1.0
Title: Hydrologic Modelling System for R Users
Description: Hydrologic modelling system is an object oriented tool which enables R users to simulate and analyze hydrologic events. The package proposes functions and methods for construction, simulation, visualization, and calibration of hydrologic systems.
Author: Rezgar Arabzadeh ; Shahab Araghinejad
Maintainer: Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>
Diff between RHMS versions 1.1 dated 2017-04-22 and 1.2 dated 2017-07-14
DESCRIPTION | 6 +-- MD5 | 68 ++++++++++++++++++++--------------------- NAMESPACE | 2 - R/addObjectToBasin.R | 26 ++++++++------- R/tune.R | 14 +++----- man/RHMS-package.Rd | 44 +++++++++++++++----------- man/Zaab.Rd | 4 +- man/addObjectToBasin.Rd | 29 +++++++---------- man/createBasin.Rd | 4 +- man/createBasin.base.Rd | 6 +-- man/createBasin.default.Rd | 6 +-- man/createDiversion.Rd | 4 +- man/createDiversion.base.Rd | 8 ++-- man/createDiversion.default.Rd | 6 +-- man/createJunction.Rd | 4 +- man/createJunction.base.Rd | 8 ++-- man/createJunction.default.Rd | 6 +-- man/createReach.Rd | 12 +++---- man/createReach.base.Rd | 12 +++---- man/createReach.default.Rd | 12 +++---- man/createReservoir.Rd | 4 +- man/createReservoir.base.Rd | 6 +-- man/createReservoir.default.Rd | 6 +-- man/createSubbasin.Rd | 26 +++++++-------- man/createSubbasin.base.Rd | 24 +++++++------- man/createSubbasin.default.Rd | 24 +++++++------- man/loss.Rd | 8 ++-- man/plot.sim.Rd | 6 +-- man/reachRouting.Rd | 10 +++--- man/sim.Rd | 6 +-- man/sim.base.Rd | 6 +-- man/sim.default.Rd | 6 +-- man/summary.sim.Rd | 4 +- man/transform.Rd | 8 ++-- man/tune.Rd | 36 ++++++++++++--------- 35 files changed, 233 insertions(+), 228 deletions(-)
Title: General Recognition Theory
Description: Functions to generate and analyze data for psychology experiments based on the General Recognition Theory.
Author: Kazunaga Matsuki
Maintainer: Andy Wills <andy@willslab.co.uk>
Diff between grt versions 0.2 dated 2014-04-10 and 0.2.1 dated 2017-07-14
DESCRIPTION | 20 - MD5 | 29 +- NAMESPACE | 68 +++--- R/gcjc.R | 420 +++++++++++++++++++------------------- R/glc.R | 552 +++++++++++++++++++++++++------------------------- R/plot.gcjc.R | 78 +++---- R/scale.R | 98 ++++---- README.md |only man/extractAIC.glc.Rd | 82 +++---- man/gaborPatch.Rd | 178 ++++++++-------- man/gcjc.Rd | 198 ++++++++--------- man/gcjcStruct.Rd | 52 ++-- man/grt-package.Rd | 96 +++++--- man/logLik.glc.Rd | 70 +++--- man/plot3d.glc.Rd | 8 man/plot3d.gqc.Rd | 10 16 files changed, 990 insertions(+), 969 deletions(-)
Title: Solvers for Initial Value Problems of Differential Equations
('ODE', 'DAE', 'DDE')
Description: Functions that solve initial value problems of a system
of first-order ordinary differential equations ('ODE'), of
partial differential equations ('PDE'), of differential
algebraic equations ('DAE'), and of delay differential
equations. The functions provide an interface to the FORTRAN
functions 'lsoda', 'lsodar', 'lsode', 'lsodes' of the 'ODEPACK'
collection, to the FORTRAN functions 'dvode', 'zvode' and 'daspk'
and a C-implementation of solvers of the 'Runge-Kutta' family with
fixed or variable time steps. The package contains routines
designed for solving 'ODEs' resulting from 1-D, 2-D and 3-D
partial differential equations ('PDE') that have been converted
to 'ODEs' by numerical differencing.
Author: Karline Soetaert [aut],
Thomas Petzoldt [aut, cre],
R. Woodrow Setzer [aut],
odepack authors [cph]
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between deSolve versions 1.14 dated 2016-09-05 and 1.20 dated 2017-07-14
DESCRIPTION | 26 MD5 | 87 - NEWS | 11 R/checkevents.R | 377 ++++---- build/vignette.rds |binary data/ccl4data.rda |binary inst/doc/compiledCode.R | 708 +++++++-------- inst/doc/compiledCode.pdf |binary inst/doc/deSolve.R | 2074 +++++++++++++++++++++++----------------------- inst/doc/deSolve.pdf |binary man/daspk.Rd | 2 man/deSolve.Rd | 34 man/dede.Rd | 66 - man/events.Rd | 62 - man/lsoda.Rd | 2 man/lsodar.Rd | 2 man/lsode.Rd | 2 man/lsodes.Rd | 1056 +++++++++++------------ man/radau.Rd | 2 man/rk.Rd | 2 man/rkMethod.Rd | 2 man/vode.Rd | 2 src/DLLutil.c | 5 src/R_init_deSolve.c | 118 ++ src/call_daspk.c | 63 - src/call_iteration.c | 3 src/call_lsoda.c | 9 src/call_radau.c | 7 src/call_zvode.c | 10 src/ddaspk.f | 238 +++-- src/deSolve.h | 12 src/deSolve_utils.c | 3 src/dintdy2.f | 8 src/dlsoder.f | 173 +++ src/dsparsk.f | 4 src/dvode.f | 2 src/errmsg.f | 6 src/externalptr.h |only src/forcings.c | 6 src/opkda1.f | 760 ++++++++++++---- src/opkdmain.f | 306 +++++- src/radau5.f | 2 src/radau5a.f | 360 +++++++ src/rk_util.c | 24 src/zvode.f | 321 +++++-- 45 files changed, 4141 insertions(+), 2816 deletions(-)
Title: Automating Mplus Model Estimation and Interpretation
Description: Leverages the R language to automate latent variable model estimation
and interpretation using 'Mplus', a powerful latent variable modeling program
developed by Muthen and Muthen (<http://www.statmodel.com>). Specifically, this package
provides routines for creating related groups of models, running batches of
models, and extracting and tabulating model parameters and fit statistics.
Author: Michael Hallquist [aut, cre],
Joshua Wiley [aut]
Maintainer: Michael Hallquist <michael.hallquist@gmail.com>
Diff between MplusAutomation versions 0.6-4 dated 2016-06-13 and 0.7 dated 2017-07-14
DESCRIPTION | 18 MD5 | 221 ++++---- NAMESPACE | 14 NEWS | 33 + R/MplusAutomation.R | 39 - R/createModels.R | 379 ++++++++++---- R/data.R |only R/extractParameters.R | 291 +++++++++-- R/methods.R | 180 ++++++ R/mplus.R | 437 ++++++++++++++-- R/parseOutput.R | 668 +++++++++++++++++-------- R/runModels.R | 947 ++++++++++++++++++------------------ R/trainlgmm.R |only R/utilityFunctions.R | 394 +++++++++++++- README.md | 66 +- build/vignette.rds |binary data |only inst/doc/Vignette.pdf |binary man/HTMLSummaryTable.Rd | 7 man/LatexSummaryTable.Rd | 7 man/MplusAutomation.Rd | 52 + man/MplusAutomationUtils.Rd |only man/SummaryTable.Rd | 7 man/addHeaderToSavedata.Rd | 1 man/addNode.Rd | 1 man/cd.Rd | 1 man/classifyTags.Rd | 1 man/clipString.Rd | 1 man/coef.mplus.model.Rd | 14 man/compareModels.Rd | 1 man/confint.mplus.model.Rd |only man/connectNodes.Rd | 1 man/createModels.Rd | 4 man/createSyntax.Rd | 7 man/createVarSyntax.Rd | 1 man/detectColumnNames.Rd |only man/detectVariables.Rd |only man/divideIntoFields.Rd | 1 man/evaluateConditional.Rd | 1 man/extract.Rd | 29 - man/extractAux.Rd | 1 man/extractClassCounts.Rd | 1 man/extractFacScoreStats.Rd | 1 man/extractFreeFile.Rd | 1 man/extractInput_1file.Rd | 1 man/extractModIndices.Rd | 7 man/extractModIndices_1chunk.Rd | 1 man/extractModIndices_1file.Rd | 1 man/extractModelParameters.Rd | 7 man/extractModelSummaries.Rd | 9 man/extractParameters_1chunk.Rd | 1 man/extractParameters_1file.Rd | 1 man/extractParameters_1section.Rd | 1 man/extractResiduals.Rd | 1 man/extractSummaries_1file.Rd | 1 man/extractSummaries_1plan.Rd | 1 man/extractSummaries_1section.Rd | 3 man/extractTech1.Rd | 1 man/extractTech10.Rd | 1 man/extractTech12.Rd | 1 man/extractTech3.Rd | 1 man/extractTech4.Rd | 1 man/extractTech7.Rd | 1 man/extractTech8.Rd |only man/extractTech9.Rd | 1 man/extractValue.Rd | 1 man/extractWarningsErrors_1file.Rd | 1 man/finalizeInitCollection.Rd | 1 man/friendlyGregexpr.Rd |only man/getInitTags.Rd | 1 man/getMultilineSection.Rd | 9 man/getOutFileList.Rd |only man/getSavedata_Bparams.Rd | 7 man/getSavedata_Data.Rd | 7 man/getSavedata_Fileinfo.Rd | 7 man/getSection.Rd |only man/graphModel.Rd | 1 man/l_getSavedata_Bparams.Rd | 1 man/l_getSavedata_Fileinfo.Rd | 1 man/l_getSavedata_readRawFile.Rd | 1 man/lcademo.Rd |only man/long2LGMM.Rd |only man/lookupSimpleTags.Rd | 1 man/lookupTech1Parameter.Rd | 7 man/lookupValue.Rd | 1 man/matrixExtract.Rd | 3 man/mplus.traceplot.Rd | 7 man/mplusModeler.Rd | 95 +++ man/mplusObject.Rd | 51 + man/mplusRcov.Rd | 1 man/mplus_as.numeric.Rd |only man/paramExtract.Rd | 7 man/parseCatOutput.Rd |only man/parseMplus.Rd | 7 man/parseTags.Rd | 1 man/plot.mplusObject.Rd | 1 man/prepareMplusData.Rd | 45 + man/prepareMplusData_Mat.Rd | 1 man/print.MplusRstructure.Rd | 10 man/processConditionalTags.Rd | 1 man/processInit.Rd | 1 man/readModels.Rd | 8 man/recurseReplace.Rd | 1 man/replaceBodyTags.Rd | 1 man/replaceInitTags.Rd | 1 man/rmVarWarnings.Rd | 7 man/runModels.Rd | 17 man/runModels_Interactive.Rd | 7 man/separateHyphens.Rd |only man/showSummaryTable.Rd | 7 man/splitDFByRow.Rd | 1 man/splitFilePath.Rd |only man/subsetModelList.Rd | 1 man/summary.mplusObject.Rd | 11 man/testBParamCompoundConstraint.Rd | 7 man/testBParamConstraint.Rd | 7 man/trainLGMM.Rd |only man/trimSpace.Rd |only man/unlabeledMatrixExtract.Rd | 1 man/update.mplusObject.Rd | 1 man/updateCurrentValues.Rd | 1 121 files changed, 2915 insertions(+), 1312 deletions(-)
More information about MplusAutomation at CRAN
Permanent link
Title: Hierarchical Clustering with Spatial Constraints
Description: Implements a Ward-like hierarchical clustering
algorithm including spatial/geographical constraints.
Author: Marie Chavent [aut, cre],
Vanessa Kuentz [aut],
Amaury Labenne [aut],
Jerome Saracco [aut]
Maintainer: Marie Chavent <Marie.Chavent@u-bordeaux.fr>
Diff between ClustGeo versions 1.0 dated 2015-06-23 and 2.0 dated 2017-07-14
ClustGeo-1.0/ClustGeo/R/getnns.R |only ClustGeo-1.0/ClustGeo/R/hclustgeo.uniq.R |only ClustGeo-1.0/ClustGeo/R/heterog.Ck.R |only ClustGeo-1.0/ClustGeo/R/heterog.parti.R |only ClustGeo-1.0/ClustGeo/R/plot.hclustgeo.R |only ClustGeo-1.0/ClustGeo/R/plot.hclustgeo.uniq.R |only ClustGeo-1.0/ClustGeo/R/print.hclustgeo.R |only ClustGeo-1.0/ClustGeo/R/print.hclustgeo.uniq.R |only ClustGeo-1.0/ClustGeo/R/print.summary.hclustgeo.R |only ClustGeo-1.0/ClustGeo/R/print.summary.hclustgeo.uniq.R |only ClustGeo-1.0/ClustGeo/R/summary.hclustgeo.R |only ClustGeo-1.0/ClustGeo/R/summary.hclustgeo.uniq.R |only ClustGeo-1.0/ClustGeo/data/comm303.rda |only ClustGeo-1.0/ClustGeo/inst/shapes |only ClustGeo-1.0/ClustGeo/man/comm303.Rd |only ClustGeo-1.0/ClustGeo/man/getnns.Rd |only ClustGeo-1.0/ClustGeo/man/hclustgeo.uniq.Rd |only ClustGeo-1.0/ClustGeo/man/heterog.Ck.Rd |only ClustGeo-1.0/ClustGeo/man/heterog.parti.Rd |only ClustGeo-1.0/ClustGeo/man/plot.hclustgeo.Rd |only ClustGeo-1.0/ClustGeo/man/plot.hclustgeo.uniq.Rd |only ClustGeo-1.0/ClustGeo/man/print.hclustgeo.Rd |only ClustGeo-1.0/ClustGeo/man/print.hclustgeo.uniq.Rd |only ClustGeo-1.0/ClustGeo/man/print.summary.hclustgeo.Rd |only ClustGeo-1.0/ClustGeo/man/print.summary.hclustgeo.uniq.Rd |only ClustGeo-1.0/ClustGeo/man/summary.hclustgeo.Rd |only ClustGeo-1.0/ClustGeo/man/summary.hclustgeo.uniq.Rd |only ClustGeo-2.0/ClustGeo/DESCRIPTION | 32 +- ClustGeo-2.0/ClustGeo/MD5 | 60 +--- ClustGeo-2.0/ClustGeo/NAMESPACE | 47 +-- ClustGeo-2.0/ClustGeo/R/choicealpha.R |only ClustGeo-2.0/ClustGeo/R/hclustgeo.R | 192 ++++++++++---- ClustGeo-2.0/ClustGeo/R/inert.R |only ClustGeo-2.0/ClustGeo/R/inertdiss.R |only ClustGeo-2.0/ClustGeo/R/plot.choicealpha.R |only ClustGeo-2.0/ClustGeo/R/wardinit.R |only ClustGeo-2.0/ClustGeo/R/withindiss.R |only ClustGeo-2.0/ClustGeo/README.md | 25 - ClustGeo-2.0/ClustGeo/build |only ClustGeo-2.0/ClustGeo/data/estuary.RData |only ClustGeo-2.0/ClustGeo/inst/commandes_CMD.R |only ClustGeo-2.0/ClustGeo/inst/doc |only ClustGeo-2.0/ClustGeo/inst/tests.R |only ClustGeo-2.0/ClustGeo/man/choicealpha.Rd |only ClustGeo-2.0/ClustGeo/man/estuary.Rd |only ClustGeo-2.0/ClustGeo/man/hclustgeo.Rd | 119 +++++--- ClustGeo-2.0/ClustGeo/man/inert.Rd |only ClustGeo-2.0/ClustGeo/man/inertdiss.Rd |only ClustGeo-2.0/ClustGeo/man/plot.choicealpha.Rd |only ClustGeo-2.0/ClustGeo/man/wardinit.Rd |only ClustGeo-2.0/ClustGeo/man/withindiss.Rd |only ClustGeo-2.0/ClustGeo/vignettes |only 52 files changed, 290 insertions(+), 185 deletions(-)
Title: Download and Aggregate Data from Public Hire Bicycle Systems
Description: Download and aggregate data from all public hire bicycle systems
which provide open data, currently including 'Santander' Cycles in London,
U.K., and from the U.S.A., 'citibike' in New York City NY, 'Divvy' in
Chicago IL, 'Capital Bikeshare' in Washington DC, 'Hubway' in Boston MA, and
'Metro' in Los Angeles LA.
Author: Mark Padgham [aut, cre],
Richard Ellison [aut],
SQLite Consortium [ctb] (Authors of included SQLite code)
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between bikedata versions 0.0.2 dated 2017-07-02 and 0.0.3 dated 2017-07-14
DESCRIPTION | 6 +- MD5 | 34 ++++++------- R/database-stats.R | 7 +- R/dl-bikedata.R | 16 +++++- R/stations.R | 6 ++ R/store-bikedata.R | 2 inst/db/testdb.sqlite |binary inst/doc/bikedata.R | 89 ++++++++++++++++++---------------- inst/doc/bikedata.Rmd | 93 ++++++++++++++++++++---------------- inst/doc/bikedata.html | 85 +++++++++++++++++--------------- man/bike_daily_trips.Rd | 5 - man/bike_summary_stats.Rd | 2 src/sqlite3db-setup.cpp | 14 ++--- tests/testthat/test-db-stats.R | 10 ++- tests/testthat/test-download-data.R | 16 +----- tests/testthat/test-stations.R | 4 - tests/testthat/test-tripmat.R | 2 vignettes/bikedata.Rmd | 93 ++++++++++++++++++++---------------- 18 files changed, 267 insertions(+), 217 deletions(-)
Title: Apps for Teaching Statistics, R Programming, and Shiny App
Development
Description: Contains apps and gadgets for teaching data analysis and
statistics concepts along with how to implement them in R. Includes
tools to make app development easier and faster by nesting apps together.
Author: Jason Freels [aut, cre],
Bradley Boehmke [ctb]
Maintainer: Jason Freels <auburngrads@live.com>
Diff between teachingApps versions 1.0.1 dated 2017-07-08 and 1.0.2 dated 2017-07-14
teachingApps-1.0.1/teachingApps/inst/apps/armadillo_hunting |only teachingApps-1.0.1/teachingApps/inst/apps/offbase_libraries |only teachingApps-1.0.2/teachingApps/DESCRIPTION | 18 - teachingApps-1.0.2/teachingApps/MD5 | 113 +++--- teachingApps-1.0.2/teachingApps/NAMESPACE | 105 ++++++ teachingApps-1.0.2/teachingApps/R/add_rmd.R | 25 + teachingApps-1.0.2/teachingApps/R/add_server.R | 29 + teachingApps-1.0.2/teachingApps/R/add_ui.R | 30 + teachingApps-1.0.2/teachingApps/R/teachingApp.R | 33 + teachingApps-1.0.2/teachingApps/R/zzz.R | 7 teachingApps-1.0.2/teachingApps/inst/apps/acceptance_mtbf/ui.R | 14 teachingApps-1.0.2/teachingApps/inst/apps/acceptance_mtbf_mini/ui.R | 4 teachingApps-1.0.2/teachingApps/inst/apps/acceptance_proportion/global.R | 2 teachingApps-1.0.2/teachingApps/inst/apps/ace_very_normal/ui.R | 28 + teachingApps-1.0.2/teachingApps/inst/apps/complex_ideas/server.R | 18 - teachingApps-1.0.2/teachingApps/inst/apps/complex_ideas/ui.R | 12 teachingApps-1.0.2/teachingApps/inst/apps/crossing_distributions/server.R | 2 teachingApps-1.0.2/teachingApps/inst/apps/cumhaz_demo/server.R | 6 teachingApps-1.0.2/teachingApps/inst/apps/data_patterns/ui.R | 8 teachingApps-1.0.2/teachingApps/inst/apps/delta_method/ui.R | 2 teachingApps-1.0.2/teachingApps/inst/apps/distribution_gamma/ui.R | 4 teachingApps-1.0.2/teachingApps/inst/apps/distribution_lev/server.R | 2 teachingApps-1.0.2/teachingApps/inst/apps/distribution_lev/ui.R | 2 teachingApps-1.0.2/teachingApps/inst/apps/distribution_lev_functions/ui.R | 12 teachingApps-1.0.2/teachingApps/inst/apps/hazard_demo/server.R | 16 teachingApps-1.0.2/teachingApps/inst/apps/hazard_demo/ui.R | 8 teachingApps-1.0.2/teachingApps/inst/apps/htmlwidgets_shiny |only teachingApps-1.0.2/teachingApps/inst/apps/kernel_density/ui.R | 3 teachingApps-1.0.2/teachingApps/inst/apps/likelihood_contributions/server.R | 5 teachingApps-1.0.2/teachingApps/inst/apps/location_scale/server.R | 22 - teachingApps-1.0.2/teachingApps/inst/apps/log_location_scale/background.Rmd | 1 teachingApps-1.0.2/teachingApps/inst/apps/log_location_scale/server.R | 165 +-------- teachingApps-1.0.2/teachingApps/inst/apps/log_location_scale/ui.R | 172 ---------- teachingApps-1.0.2/teachingApps/inst/apps/logistics_performance/global.R | 2 teachingApps-1.0.2/teachingApps/inst/apps/logistics_performance/server.R | 4 teachingApps-1.0.2/teachingApps/inst/apps/mathjax_example/global.R | 2 teachingApps-1.0.2/teachingApps/inst/apps/nesting_demo |only teachingApps-1.0.2/teachingApps/inst/apps/pdf_demo/server.R | 7 teachingApps-1.0.2/teachingApps/inst/apps/plotting_adding/ui.R | 7 teachingApps-1.0.2/teachingApps/inst/apps/plotting_basic/ui.R | 35 -- teachingApps-1.0.2/teachingApps/inst/apps/plotting_par/ui.R | 28 - teachingApps-1.0.2/teachingApps/inst/apps/plotting_positions/ui.R | 8 teachingApps-1.0.2/teachingApps/inst/apps/plotting_special/ui.R | 6 teachingApps-1.0.2/teachingApps/inst/apps/probability_functions/ui.R | 26 - teachingApps-1.0.2/teachingApps/inst/apps/program_costs/ui.R | 2 teachingApps-1.0.2/teachingApps/inst/apps/quantile_demo/server.R | 22 - teachingApps-1.0.2/teachingApps/inst/apps/r_toolchain/ui.R | 2 teachingApps-1.0.2/teachingApps/inst/apps/sankey_network/server.R | 12 teachingApps-1.0.2/teachingApps/inst/apps/significant_factors/server.R | 4 teachingApps-1.0.2/teachingApps/inst/apps/survival_demo/server.R | 15 teachingApps-1.0.2/teachingApps/inst/teachingApps/css/teachingApps.css | 2 teachingApps-1.0.2/teachingApps/man/add_rmd.Rd | 4 teachingApps-1.0.2/teachingApps/man/add_server.Rd | 8 teachingApps-1.0.2/teachingApps/man/add_ui.Rd | 6 54 files changed, 464 insertions(+), 606 deletions(-)
Title: Theme Enrichment Analysis for Stories
Description: An implementation of the hypergeometric test to check for over-represented themes in a storyset relative to a background set of stories.
Author: Paul Sheridan, Mikael Onsjö
Maintainer: Paul Sheridan <paul.sheridan.stats@gmail.com>
Diff between stoRy versions 0.1.0 dated 2017-05-09 and 0.1.1 dated 2017-07-14
stoRy-0.1.0/stoRy/R/data_help_files.R |only stoRy-0.1.0/stoRy/data/kdata.rda |only stoRy-0.1.0/stoRy/data/mdata.rda |only stoRy-0.1.0/stoRy/data/tdata.rda |only stoRy-0.1.0/stoRy/data/todata.rda |only stoRy-0.1.0/stoRy/data/tsdata.rda |only stoRy-0.1.0/stoRy/inst/master |only stoRy-0.1.0/stoRy/man/kdata.Rd |only stoRy-0.1.0/stoRy/man/mdata.Rd |only stoRy-0.1.0/stoRy/man/tdata.Rd |only stoRy-0.1.0/stoRy/man/todata.Rd |only stoRy-0.1.0/stoRy/man/tsdata.Rd |only stoRy-0.1.1/stoRy/DESCRIPTION | 12 - stoRy-0.1.1/stoRy/MD5 | 87 ++++---- stoRy-0.1.1/stoRy/NAMESPACE | 3 stoRy-0.1.1/stoRy/NEWS.md | 8 stoRy-0.1.1/stoRy/R/TEA.r | 152 ++++++++------- stoRy-0.1.1/stoRy/R/checks.r | 16 - stoRy-0.1.1/stoRy/R/data_help_files.r |only stoRy-0.1.1/stoRy/R/def_story.r | 105 +++++----- stoRy-0.1.1/stoRy/R/def_storysets.r | 13 - stoRy-0.1.1/stoRy/R/def_theme.r | 54 +++-- stoRy-0.1.1/stoRy/R/print_tree.r |only stoRy-0.1.1/stoRy/R/sysdata.rda |binary stoRy-0.1.1/stoRy/build/vignette.rds |binary stoRy-0.1.1/stoRy/data/story_ids_by_theme.rda |only stoRy-0.1.1/stoRy/data/story_keywords.rda |only stoRy-0.1.1/stoRy/data/story_metadata.rda |only stoRy-0.1.1/stoRy/data/story_settings.rda |only stoRy-0.1.1/stoRy/data/theme_definitions.rda |only stoRy-0.1.1/stoRy/data/themed_stories.rda |only stoRy-0.1.1/stoRy/inst/datasets |only stoRy-0.1.1/stoRy/inst/doc/vignette.R | 63 +++++- stoRy-0.1.1/stoRy/inst/doc/vignette.Rnw | 101 +++++++-- stoRy-0.1.1/stoRy/inst/doc/vignette.pdf |binary stoRy-0.1.1/stoRy/inst/storysets/aliens.smt | 18 - stoRy-0.1.1/stoRy/inst/storysets/characters.smt | 34 +-- stoRy-0.1.1/stoRy/inst/storysets/conservation_status.smt | 14 - stoRy-0.1.1/stoRy/inst/storysets/genres.smt | 30 +- stoRy-0.1.1/stoRy/inst/storysets/series.smt | 6 stoRy-0.1.1/stoRy/inst/storysets/writers.smt | 44 ++-- stoRy-0.1.1/stoRy/man/TEA.Rd | 33 +-- stoRy-0.1.1/stoRy/man/print_tree.Rd |only stoRy-0.1.1/stoRy/man/story.Rd | 44 ++-- stoRy-0.1.1/stoRy/man/story_ids_by_theme.Rd |only stoRy-0.1.1/stoRy/man/story_keywords.Rd |only stoRy-0.1.1/stoRy/man/story_metadata.Rd |only stoRy-0.1.1/stoRy/man/story_settings.Rd |only stoRy-0.1.1/stoRy/man/storysets.Rd | 13 - stoRy-0.1.1/stoRy/man/theme.Rd | 14 + stoRy-0.1.1/stoRy/man/theme_definitions.Rd |only stoRy-0.1.1/stoRy/man/themed_stories.Rd |only stoRy-0.1.1/stoRy/vignettes/vignette-concordance.tex | 5 stoRy-0.1.1/stoRy/vignettes/vignette.Rnw | 101 +++++++-- 54 files changed, 607 insertions(+), 363 deletions(-)
Title: Fetch Hillary Rodham Clinton's Emails
Description: Fetch and process Hillary Rodham Clinton's "personal" emails.
Author: John Coene [aut, cre]
Maintainer: John Coene <jcoenep@gmail.com>
Diff between rodham versions 0.0.3 dated 2017-01-20 and 0.1.0 dated 2017-07-14
DESCRIPTION | 10 - MD5 | 57 +++--- NAMESPACE | 42 +++- NEWS.md | 64 ++++-- R/clean.R |only R/extractor.R | 74 ++++--- R/get.R |only R/get_emails.R | 290 +++++++++++++++++++------------ R/hrcnames.R |only R/load.R |only R/print.R |only R/rodham.R | 139 +++++++++----- R/utils.R | 163 +++++++++++------ README.md | 138 +++++++++----- build/vignette.rds |binary data/hrc_names.rda |only inst/doc/how-to.R | 108 ++++++----- inst/doc/how-to.Rmd | 230 +++++++++++++----------- inst/doc/how-to.html | 430 ++++++++++++++++++++++++---------------------- man/clean_content.Rd |only man/download_emails.Rd |only man/edges_emails.Rd | 65 +++--- man/emails.Rd | 59 +++--- man/extract_emails.Rd |only man/get_com.Rd |only man/get_content.Rd |only man/get_date.Rd |only man/get_emails.Rd | 160 ++++++++--------- man/get_interest.Rd |only man/get_or.Rd |only man/get_subject.Rd |only man/get_xpdf.Rd | 63 +++--- man/hrc_names.Rd |only man/load_emails.Rd |only man/rodham.Rd | 149 +++++++++------ man/search_emails.Rd | 103 +++++------ tests/testthat/test_all.R | 94 ++++++---- vignettes/how-to.Rmd | 230 +++++++++++++----------- 38 files changed, 1548 insertions(+), 1120 deletions(-)
Title: Data Science Labs
Description: Datasets and functions that facilitate data analysis labs in data science courses and workshops.
Author: Rafael A. Irizarry
Maintainer: Rafael A. Irizarry <rafa@jimmy.harvard.edu>
Diff between dslabs versions 0.0.1 dated 2017-01-19 and 0.1.0 dated 2017-07-14
dslabs-0.0.1/dslabs/inst/script/murders-creation.R |only dslabs-0.0.1/dslabs/inst/script/na_example-creation.R |only dslabs-0.1.0/dslabs/DESCRIPTION | 9 +- dslabs-0.1.0/dslabs/MD5 | 44 ++++++++-- dslabs-0.1.0/dslabs/NAMESPACE | 2 dslabs-0.1.0/dslabs/R/ds_theme_set.R |only dslabs-0.1.0/dslabs/R/gapminder.R |only dslabs-0.1.0/dslabs/R/heights.R |only dslabs-0.1.0/dslabs/R/murders.R | 9 +- dslabs-0.1.0/dslabs/R/outlier_example.R |only dslabs-0.1.0/dslabs/R/polls_us_election_2016.R |only dslabs-0.1.0/dslabs/R/reported_heights.R |only dslabs-0.1.0/dslabs/R/take_poll.R |only dslabs-0.1.0/dslabs/R/us_contagious_disease.R |only dslabs-0.1.0/dslabs/R/utils.R |only dslabs-0.1.0/dslabs/data/gapminder.rda |only dslabs-0.1.0/dslabs/data/heights.rda |only dslabs-0.1.0/dslabs/data/na_example.rda |binary dslabs-0.1.0/dslabs/data/outlier_example.rda |only dslabs-0.1.0/dslabs/data/polls_us_election_2016.rda |only dslabs-0.1.0/dslabs/data/reported_heights.rda |only dslabs-0.1.0/dslabs/data/us_contagious_diseases.rda |only dslabs-0.1.0/dslabs/inst/script/make-gapminder-rdas.R |only dslabs-0.1.0/dslabs/inst/script/make-murders-rda.R |only dslabs-0.1.0/dslabs/inst/script/make-na_example-rda.R |only dslabs-0.1.0/dslabs/inst/script/make-outlier_example.R |only dslabs-0.1.0/dslabs/inst/script/make-polls_us_election_2016.R |only dslabs-0.1.0/dslabs/inst/script/make-reported_heights-rda.R |only dslabs-0.1.0/dslabs/inst/script/make-weekly_us_contagious_diseases.R |only dslabs-0.1.0/dslabs/man/ds_theme_set.Rd |only dslabs-0.1.0/dslabs/man/gapminder.Rd |only dslabs-0.1.0/dslabs/man/heights.Rd |only dslabs-0.1.0/dslabs/man/murders.Rd | 12 ++ dslabs-0.1.0/dslabs/man/na_example.Rd | 1 dslabs-0.1.0/dslabs/man/outlier_example.Rd |only dslabs-0.1.0/dslabs/man/polls_us_election_2016.Rd |only dslabs-0.1.0/dslabs/man/reported_heights.Rd |only dslabs-0.1.0/dslabs/man/take_poll.Rd |only dslabs-0.1.0/dslabs/man/us_contagious_diseases.Rd |only 39 files changed, 61 insertions(+), 16 deletions(-)
Title: Make it Easier to Enter Questionnaire Data
Description: This is a GUI application for defining
attributes and setting valid values of variables, and then,
entering questionnaire data in a data.frame.
Author: Jakson Aquino
Maintainer: Jakson Aquino <jalvesaq@gmail.com>
Diff between DataEntry versions 0.9-1 dated 2017-03-14 and 0.9-2 dated 2017-07-14
DataEntry-0.9-1/DataEntry/TODO |only DataEntry-0.9-2/DataEntry/DESCRIPTION | 10 DataEntry-0.9-2/DataEntry/MD5 | 35 +-- DataEntry-0.9-2/DataEntry/NAMESPACE | 2 DataEntry-0.9-2/DataEntry/R/Attr.R | 104 +++++----- DataEntry-0.9-2/DataEntry/R/DataView.R | 16 + DataEntry-0.9-2/DataEntry/R/Export.R | 70 +++--- DataEntry-0.9-2/DataEntry/R/MainWindow.R | 15 + DataEntry-0.9-2/DataEntry/R/Options.R | 61 +++-- DataEntry-0.9-2/DataEntry/R/Row.R | 50 ++-- DataEntry-0.9-2/DataEntry/R/VarList.R | 15 - DataEntry-0.9-2/DataEntry/R/dataframe2csv.R | 7 DataEntry-0.9-2/DataEntry/R/fun.R | 8 DataEntry-0.9-2/DataEntry/README.md | 58 +++-- DataEntry-0.9-2/DataEntry/build/partial.rdb |binary DataEntry-0.9-2/DataEntry/inst/po/en@quot/LC_MESSAGES/R-DataEntry.mo |binary DataEntry-0.9-2/DataEntry/inst/po/pt_BR/LC_MESSAGES/R-DataEntry.mo |binary DataEntry-0.9-2/DataEntry/po/R-DataEntry.pot | 22 +- DataEntry-0.9-2/DataEntry/po/R-pt_BR.po | 26 +- 19 files changed, 288 insertions(+), 211 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-20 3.8-2
2017-01-18 3.8-1
2016-08-18 3.8
2016-05-06 3.7-1
2016-03-04 3.7
2015-12-07 3.6-1
2015-08-24 3.6
2015-07-22 3.5
2015-06-11 3.4
2015-02-09 3.3
2015-01-15 3.2-13.2
2015-01-08 3.2-13.1
2014-12-18 3.2-13
2014-11-12 3.2-12.1
2014-10-17 3.2-12
2014-07-02 3.2-11
2014-02-14 3.2-10
2013-11-29 3.2-9
2013-10-02 3.2-8
2013-07-30 3.2-7
2013-04-29 3.2-6
2012-11-15 3.2-5
2012-11-14 3.2-4
2012-10-04 3.2-3
2012-06-28 3.2-2
2012-05-16 3.2-1
2012-05-08 3.2
2012-03-02 3.1
2012-01-14 3.0
2011-10-08 2.0-4.1
2011-09-27 2.0-4
2011-05-16 2.0-3
2011-05-09 2.0-2
2011-05-03 2.0-1
2011-04-24 2.0
2011-04-12 1.0-3
2011-04-01 1.0-2
2011-03-17 1.0-1
2011-03-07 1.0
2011-03-01 0.2
2011-01-06 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-13 0.1-1