Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-06 0.1.1
2017-02-03 0.1
Title: A 'robots.txt' Parser and 'Webbot'/'Spider'/'Crawler'
Permissions Checker
Description: Provides functions to download and parse 'robots.txt' files.
Ultimately the package makes it easy to check if bots
(spiders, scrapers, ...) are allowed to access specific
resources on a domain.
Author: Peter Meissner [aut, cre],
Oliver Keys [ctb],
Rich Fitz John [ctb]
Maintainer: Peter Meissner <retep.meissner@gmail.com>
Diff between robotstxt versions 0.3.2 dated 2016-04-27 and 0.4.0 dated 2017-07-16
robotstxt-0.3.2/robotstxt/NEWS |only robotstxt-0.4.0/robotstxt/DESCRIPTION | 10 robotstxt-0.4.0/robotstxt/MD5 | 74 ++--- robotstxt-0.4.0/robotstxt/NAMESPACE | 1 robotstxt-0.4.0/robotstxt/NEWS.md |only robotstxt-0.4.0/robotstxt/R/parse_robotstxt.R | 111 +++++++- robotstxt-0.4.0/robotstxt/R/permissions.R | 92 +++++- robotstxt-0.4.0/robotstxt/R/robotstxt.R | 72 ++--- robotstxt-0.4.0/robotstxt/R/valid_robotstxt.R |only robotstxt-0.4.0/robotstxt/README.md | 104 +++---- robotstxt-0.4.0/robotstxt/build/vignette.rds |binary robotstxt-0.4.0/robotstxt/inst/doc/using_robotstxt.R | 6 robotstxt-0.4.0/robotstxt/inst/doc/using_robotstxt.Rmd | 6 robotstxt-0.4.0/robotstxt/inst/doc/using_robotstxt.html | 16 - robotstxt-0.4.0/robotstxt/inst/robotstxts/robots_facebook.txt |only robotstxt-0.4.0/robotstxt/inst/robotstxts/robots_facebook_unsupported.txt |only robotstxt-0.4.0/robotstxt/inst/robotstxts/robots_wikipedia_20170706.txt |only robotstxt-0.4.0/robotstxt/man/get_robotstxt.Rd | 11 robotstxt-0.4.0/robotstxt/man/get_robotstxt_http_get.Rd |only robotstxt-0.4.0/robotstxt/man/guess_domain.Rd | 1 robotstxt-0.4.0/robotstxt/man/is_valid_robotstxt.Rd |only robotstxt-0.4.0/robotstxt/man/named_list.Rd | 1 robotstxt-0.4.0/robotstxt/man/parse_robotstxt.Rd | 1 robotstxt-0.4.0/robotstxt/man/path_allowed.Rd | 1 robotstxt-0.4.0/robotstxt/man/paths_allowed.Rd | 7 robotstxt-0.4.0/robotstxt/man/print.robotstxt.Rd | 1 robotstxt-0.4.0/robotstxt/man/print.robotstxt_text.Rd | 1 robotstxt-0.4.0/robotstxt/man/remove_domain.Rd | 1 robotstxt-0.4.0/robotstxt/man/robotstxt.Rd | 7 robotstxt-0.4.0/robotstxt/man/rt_cache.Rd | 1 robotstxt-0.4.0/robotstxt/man/rt_get_comments.Rd | 1 robotstxt-0.4.0/robotstxt/man/rt_get_fields.Rd | 1 robotstxt-0.4.0/robotstxt/man/rt_get_fields_worker.Rd | 1 robotstxt-0.4.0/robotstxt/man/rt_get_rtxt.Rd | 1 robotstxt-0.4.0/robotstxt/man/rt_get_useragent.Rd | 1 robotstxt-0.4.0/robotstxt/man/rt_list_rtxt.Rd | 1 robotstxt-0.4.0/robotstxt/man/sanitize_path.Rd | 1 robotstxt-0.4.0/robotstxt/man/sanitize_permission_values.Rd | 1 robotstxt-0.4.0/robotstxt/man/sanitize_permissions.Rd | 1 robotstxt-0.4.0/robotstxt/tests/testthat/test_parser.R | 135 ++++++++-- robotstxt-0.4.0/robotstxt/tests/testthat/test_permissions.R | 1 robotstxt-0.4.0/robotstxt/vignettes/using_robotstxt.Rmd | 6 42 files changed, 466 insertions(+), 210 deletions(-)
Title: Procrustes Application to Cophylogenetic Analysis
Description: Procrustes analyses to infer co-phylogenetic
matching between pairs of (ultrametric) phylogenetic trees.
Author: Juan Antonio Balbuena <j.a.balbuena@uv.es>, Timothee Poisot
<tim@poisotlab.io>, Matthew Hutchinson <matthewhutchinson15@gmail.com>,
Fernando Cagua <fernando@cagua.co>
Maintainer: Matthew Hutchinson <matthewhutchinson15@gmail.com>
Diff between paco versions 0.3.1 dated 2016-12-05 and 0.3.2 dated 2017-07-16
DESCRIPTION | 12 ++++----- MD5 | 22 +++++++++--------- R/coordpcoa.r | 24 +++++++++---------- R/paco_links.r | 57 ++++++++++++++++++++++++----------------------- man/PACo.Rd | 1 man/add_pcoord.Rd | 1 man/gl_links.Rd | 1 man/gophertree.Rd | 1 man/licetree.Rd | 1 man/paco_links.Rd | 1 man/prepare_paco_data.Rd | 1 man/residuals_paco.Rd | 1 12 files changed, 59 insertions(+), 64 deletions(-)
Title: Functions to Embed Video in HTML
Description: A set of functions for generating HTML to
embed hosted video in your R Markdown documents or Shiny applications.
Author: Ian Lyttle [aut, cre, cph],
Schneider Electric [cph]
Maintainer: Ian Lyttle <ian.lyttle@schneider-electric.com>
Diff between vembedr versions 0.1.2 dated 2017-01-11 and 0.1.3 dated 2017-07-16
DESCRIPTION | 10 ++-- MD5 | 60 ++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 7 +++ R/embed.R | 17 ++++++++ R/helper.R | 34 ++++++++++++---- R/parse.R | 20 ++++++++- R/pipe.R | 2 R/use_start_time.R | 8 +-- R/vembedr.R | 3 - README.md | 84 ++++++++++++++++++++++++++++------------- build/vignette.rds |binary inst/doc/helpers.Rmd | 4 - inst/doc/helpers.html | 14 +++--- inst/doc/services.Rmd | 10 ++-- inst/doc/services.html | 18 ++++---- man/build_suggestion.Rd | 1 man/embed.Rd | 10 +++- man/embed_url.Rd | 1 man/hms.Rd | 6 -- man/parse_video_url.Rd | 1 man/pipe.Rd | 3 - man/rickroll.Rd | 3 - man/secs.Rd | 7 --- man/suggest_embed.Rd | 1 man/use_start_time.Rd | 7 +-- man/vembedr.Rd | 4 - tests/testthat/test-secs-hms.R | 23 +++++------ tests/testthat/test-suggest.R | 15 +++++++ vignettes/helpers.Rmd | 4 - vignettes/services.Rmd | 10 ++-- 31 files changed, 240 insertions(+), 148 deletions(-)
Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can
handle large graphs very well and provides functions for generating random
and regular graphs, graph visualization, centrality methods and much more.
Author: See AUTHORS file.
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between igraph versions 1.0.1 dated 2015-06-26 and 1.1.1 dated 2017-07-16
igraph-1.0.1/igraph/inst/tests |only igraph-1.0.1/igraph/src/bliss_bignum.hh |only igraph-1.0.1/igraph/src/bliss_defs.hh |only igraph-1.0.1/igraph/src/bliss_eqrefhash.cc |only igraph-1.0.1/igraph/src/bliss_eqrefhash.hh |only igraph-1.0.1/igraph/src/bliss_graph.cc |only igraph-1.0.1/igraph/src/bliss_graph.hh |only igraph-1.0.1/igraph/src/bliss_heap.cc |only igraph-1.0.1/igraph/src/bliss_heap.hh |only igraph-1.0.1/igraph/src/bliss_kqueue.hh |only igraph-1.0.1/igraph/src/bliss_kstack.hh |only igraph-1.0.1/igraph/src/bliss_orbit.cc |only igraph-1.0.1/igraph/src/bliss_orbit.hh |only igraph-1.0.1/igraph/src/bliss_partition.cc |only igraph-1.0.1/igraph/src/bliss_partition.hh |only igraph-1.0.1/igraph/src/bliss_timer.cc |only igraph-1.0.1/igraph/src/bliss_timer.hh |only igraph-1.0.1/igraph/src/bliss_utils.cc |only igraph-1.0.1/igraph/src/bliss_utils.hh |only igraph-1.1.1/igraph/DESCRIPTION | 49 igraph-1.1.1/igraph/MD5 | 1458 ++++++------ igraph-1.1.1/igraph/NAMESPACE | 61 igraph-1.1.1/igraph/R/adjacency.R | 12 igraph-1.1.1/igraph/R/attributes.R | 63 igraph-1.1.1/igraph/R/auto.R | 465 +-- igraph-1.1.1/igraph/R/basic.R | 9 igraph-1.1.1/igraph/R/bipartite.R | 9 igraph-1.1.1/igraph/R/centrality.R | 24 igraph-1.1.1/igraph/R/cliques.R | 55 igraph-1.1.1/igraph/R/cocitation.R | 10 igraph-1.1.1/igraph/R/cohesive.blocks.R | 8 igraph-1.1.1/igraph/R/community.R | 133 - igraph-1.1.1/igraph/R/components.R | 19 igraph-1.1.1/igraph/R/console.R | 2 igraph-1.1.1/igraph/R/conversion.R | 49 igraph-1.1.1/igraph/R/decomposition.R | 6 igraph-1.1.1/igraph/R/embedding.R | 30 igraph-1.1.1/igraph/R/epi.R | 4 igraph-1.1.1/igraph/R/fit.R | 5 igraph-1.1.1/igraph/R/flow.R | 62 igraph-1.1.1/igraph/R/foreign.R | 104 igraph-1.1.1/igraph/R/games.R | 140 - igraph-1.1.1/igraph/R/glet.R | 12 igraph-1.1.1/igraph/R/hrg.R | 24 igraph-1.1.1/igraph/R/igraph-package.R | 11 igraph-1.1.1/igraph/R/incidence.R | 5 igraph-1.1.1/igraph/R/indexing.R | 2 igraph-1.1.1/igraph/R/interface.R | 78 igraph-1.1.1/igraph/R/iterators.R | 242 + igraph-1.1.1/igraph/R/layout.R | 134 - igraph-1.1.1/igraph/R/layout_drl.R | 14 igraph-1.1.1/igraph/R/lazyeval.R | 10 igraph-1.1.1/igraph/R/make.R | 104 igraph-1.1.1/igraph/R/mgclust.R | 10 igraph-1.1.1/igraph/R/minimum.spanning.tree.R | 13 igraph-1.1.1/igraph/R/motifs.R | 21 igraph-1.1.1/igraph/R/nexus.R | 9 igraph-1.1.1/igraph/R/operators.R | 57 igraph-1.1.1/igraph/R/other.R | 12 igraph-1.1.1/igraph/R/package.R | 7 igraph-1.1.1/igraph/R/palette.R | 1 igraph-1.1.1/igraph/R/par.R | 99 igraph-1.1.1/igraph/R/paths.R | 6 igraph-1.1.1/igraph/R/plot.R | 55 igraph-1.1.1/igraph/R/plot.common.R | 46 igraph-1.1.1/igraph/R/plot.shapes.R | 22 igraph-1.1.1/igraph/R/pp.R | 2 igraph-1.1.1/igraph/R/print.R | 43 igraph-1.1.1/igraph/R/printr.R | 7 igraph-1.1.1/igraph/R/random_walk.R | 7 igraph-1.1.1/igraph/R/rewire.R | 16 igraph-1.1.1/igraph/R/scan.R | 55 igraph-1.1.1/igraph/R/scg.R | 43 igraph-1.1.1/igraph/R/sgm.R | 5 igraph-1.1.1/igraph/R/socnet.R | 40 igraph-1.1.1/igraph/R/structural.properties.R | 307 +- igraph-1.1.1/igraph/R/structure.info.R | 7 igraph-1.1.1/igraph/R/test.R | 4 igraph-1.1.1/igraph/R/tkplot.R | 2 igraph-1.1.1/igraph/R/topology.R | 36 igraph-1.1.1/igraph/R/triangles.R | 2 igraph-1.1.1/igraph/R/utils.R | 2 igraph-1.1.1/igraph/R/uuid.R | 4 igraph-1.1.1/igraph/R/versions.R | 6 igraph-1.1.1/igraph/R/weakref.R | 10 igraph-1.1.1/igraph/R/zzz-deprecate.R | 2 igraph-1.1.1/igraph/configure | 18 igraph-1.1.1/igraph/configure.ac | 2 igraph-1.1.1/igraph/inst/NEWS.md | 63 igraph-1.1.1/igraph/inst/README.md | 1 igraph-1.1.1/igraph/inst/benchmarks/time_call.R | 4 igraph-1.1.1/igraph/man/E.Rd | 37 igraph-1.1.1/igraph/man/V.Rd | 35 igraph-1.1.1/igraph/man/aaa-igraph-package.Rd | 11 igraph-1.1.1/igraph/man/add_edges.Rd | 18 igraph-1.1.1/igraph/man/add_layout_.Rd | 55 igraph-1.1.1/igraph/man/add_vertices.Rd | 18 igraph-1.1.1/igraph/man/adjacent_vertices.Rd | 20 igraph-1.1.1/igraph/man/all_simple_paths.Rd | 5 igraph-1.1.1/igraph/man/alpha_centrality.Rd | 16 igraph-1.1.1/igraph/man/are_adjacent.Rd | 22 igraph-1.1.1/igraph/man/arpack.Rd | 35 igraph-1.1.1/igraph/man/articulation_points.Rd | 12 igraph-1.1.1/igraph/man/as.directed.Rd | 12 igraph-1.1.1/igraph/man/as.igraph.Rd | 5 igraph-1.1.1/igraph/man/as_adj_list.Rd | 13 igraph-1.1.1/igraph/man/as_adjacency_matrix.Rd | 6 igraph-1.1.1/igraph/man/as_edgelist.Rd | 5 igraph-1.1.1/igraph/man/as_graphnel.Rd | 7 igraph-1.1.1/igraph/man/as_ids.Rd | 5 igraph-1.1.1/igraph/man/as_incidence_matrix.Rd | 11 igraph-1.1.1/igraph/man/as_long_data_frame.Rd | 3 igraph-1.1.1/igraph/man/as_membership.Rd | 3 igraph-1.1.1/igraph/man/assortativity.Rd | 14 igraph-1.1.1/igraph/man/authority_score.Rd | 12 igraph-1.1.1/igraph/man/automorphisms.Rd | 14 igraph-1.1.1/igraph/man/betweenness.Rd | 18 igraph-1.1.1/igraph/man/bfs.Rd | 12 igraph-1.1.1/igraph/man/biconnected_components.Rd | 12 igraph-1.1.1/igraph/man/bipartite_mapping.Rd | 6 igraph-1.1.1/igraph/man/bipartite_projection.Rd | 10 igraph-1.1.1/igraph/man/c.igraph.es.Rd | 34 igraph-1.1.1/igraph/man/c.igraph.vs.Rd | 34 igraph-1.1.1/igraph/man/canonical_permutation.Rd | 14 igraph-1.1.1/igraph/man/categorical_pal.Rd | 7 igraph-1.1.1/igraph/man/centr_betw.Rd | 17 igraph-1.1.1/igraph/man/centr_betw_tmax.Rd | 17 igraph-1.1.1/igraph/man/centr_clo.Rd | 19 igraph-1.1.1/igraph/man/centr_clo_tmax.Rd | 19 igraph-1.1.1/igraph/man/centr_degree.Rd | 20 igraph-1.1.1/igraph/man/centr_degree_tmax.Rd | 20 igraph-1.1.1/igraph/man/centr_eigen.Rd | 22 igraph-1.1.1/igraph/man/centr_eigen_tmax.Rd | 22 igraph-1.1.1/igraph/man/centralize.Rd | 22 igraph-1.1.1/igraph/man/cliques.Rd | 25 igraph-1.1.1/igraph/man/closeness.Rd | 15 igraph-1.1.1/igraph/man/cluster_edge_betweenness.Rd | 17 igraph-1.1.1/igraph/man/cluster_fast_greedy.Rd | 16 igraph-1.1.1/igraph/man/cluster_infomap.Rd | 24 igraph-1.1.1/igraph/man/cluster_label_prop.Rd | 18 igraph-1.1.1/igraph/man/cluster_leading_eigen.Rd | 18 igraph-1.1.1/igraph/man/cluster_louvain.Rd | 13 igraph-1.1.1/igraph/man/cluster_optimal.Rd | 16 igraph-1.1.1/igraph/man/cluster_spinglass.Rd | 26 igraph-1.1.1/igraph/man/cluster_walktrap.Rd | 17 igraph-1.1.1/igraph/man/cocitation.Rd | 7 igraph-1.1.1/igraph/man/cohesive_blocks.Rd | 54 igraph-1.1.1/igraph/man/communities.Rd | 61 igraph-1.1.1/igraph/man/compare.Rd | 11 igraph-1.1.1/igraph/man/complementer.Rd | 5 igraph-1.1.1/igraph/man/component_wise.Rd | 61 igraph-1.1.1/igraph/man/components.Rd | 25 igraph-1.1.1/igraph/man/compose.Rd | 11 igraph-1.1.1/igraph/man/consensus_tree.Rd | 14 igraph-1.1.1/igraph/man/console.Rd | 9 igraph-1.1.1/igraph/man/constraint.Rd | 15 igraph-1.1.1/igraph/man/contract.Rd | 5 igraph-1.1.1/igraph/man/convex_hull.Rd | 12 igraph-1.1.1/igraph/man/coreness.Rd | 11 igraph-1.1.1/igraph/man/count_isomorphisms.Rd | 28 igraph-1.1.1/igraph/man/count_motifs.Rd | 8 igraph-1.1.1/igraph/man/count_subgraph_isomorphisms.Rd | 29 igraph-1.1.1/igraph/man/count_triangles.Rd | 14 igraph-1.1.1/igraph/man/curve_multiple.Rd | 13 igraph-1.1.1/igraph/man/decompose.Rd | 11 igraph-1.1.1/igraph/man/degree.Rd | 6 igraph-1.1.1/igraph/man/delete_edge_attr.Rd | 54 igraph-1.1.1/igraph/man/delete_edges.Rd | 18 igraph-1.1.1/igraph/man/delete_graph_attr.Rd | 54 igraph-1.1.1/igraph/man/delete_vertex_attr.Rd | 54 igraph-1.1.1/igraph/man/delete_vertices.Rd | 18 igraph-1.1.1/igraph/man/dfs.Rd | 12 igraph-1.1.1/igraph/man/diameter.Rd | 15 igraph-1.1.1/igraph/man/difference.Rd | 3 igraph-1.1.1/igraph/man/difference.igraph.Rd | 8 igraph-1.1.1/igraph/man/difference.igraph.es.Rd | 33 igraph-1.1.1/igraph/man/difference.igraph.vs.Rd | 33 igraph-1.1.1/igraph/man/dim_select.Rd | 13 igraph-1.1.1/igraph/man/disjoint_union.Rd | 13 igraph-1.1.1/igraph/man/distances.Rd | 25 igraph-1.1.1/igraph/man/diverging_pal.Rd | 7 igraph-1.1.1/igraph/man/diversity.Rd | 10 igraph-1.1.1/igraph/man/dominator_tree.Rd | 12 igraph-1.1.1/igraph/man/dyad_census.Rd | 12 igraph-1.1.1/igraph/man/each_edge.Rd | 14 igraph-1.1.1/igraph/man/eccentricity.Rd | 3 igraph-1.1.1/igraph/man/edge.Rd | 18 igraph-1.1.1/igraph/man/edge_attr-set.Rd | 55 igraph-1.1.1/igraph/man/edge_attr.Rd | 54 igraph-1.1.1/igraph/man/edge_attr_names.Rd | 53 igraph-1.1.1/igraph/man/edge_connectivity.Rd | 17 igraph-1.1.1/igraph/man/edge_density.Rd | 11 igraph-1.1.1/igraph/man/ego.Rd | 41 igraph-1.1.1/igraph/man/eigen_centrality.Rd | 17 igraph-1.1.1/igraph/man/embed_adjacency_matrix.Rd | 11 igraph-1.1.1/igraph/man/embed_laplacian_matrix.Rd | 18 igraph-1.1.1/igraph/man/ends.Rd | 21 igraph-1.1.1/igraph/man/erdos.renyi.game.Rd | 12 igraph-1.1.1/igraph/man/fit_hrg.Rd | 14 igraph-1.1.1/igraph/man/fit_power_law.Rd | 13 igraph-1.1.1/igraph/man/get.edge.ids.Rd | 26 igraph-1.1.1/igraph/man/girth.Rd | 11 igraph-1.1.1/igraph/man/gorder.Rd | 20 igraph-1.1.1/igraph/man/graph_.Rd | 3 igraph-1.1.1/igraph/man/graph_attr-set.Rd | 54 igraph-1.1.1/igraph/man/graph_attr.Rd | 55 igraph-1.1.1/igraph/man/graph_attr_names.Rd | 54 igraph-1.1.1/igraph/man/graph_from_adj_list.Rd | 12 igraph-1.1.1/igraph/man/graph_from_adjacency_matrix.Rd | 15 igraph-1.1.1/igraph/man/graph_from_atlas.Rd | 42 igraph-1.1.1/igraph/man/graph_from_data_frame.Rd | 18 igraph-1.1.1/igraph/man/graph_from_edgelist.Rd | 42 igraph-1.1.1/igraph/man/graph_from_graphdb.Rd | 12 igraph-1.1.1/igraph/man/graph_from_graphnel.Rd | 5 igraph-1.1.1/igraph/man/graph_from_incidence_matrix.Rd | 15 igraph-1.1.1/igraph/man/graph_from_isomorphism_class.Rd | 28 igraph-1.1.1/igraph/man/graph_from_lcf.Rd | 12 igraph-1.1.1/igraph/man/graph_from_literal.Rd | 44 igraph-1.1.1/igraph/man/graph_id.Rd |only igraph-1.1.1/igraph/man/graph_version.Rd | 3 igraph-1.1.1/igraph/man/graphlet_basis.Rd | 12 igraph-1.1.1/igraph/man/groups.Rd | 5 igraph-1.1.1/igraph/man/gsize.Rd | 22 igraph-1.1.1/igraph/man/head_of.Rd | 20 igraph-1.1.1/igraph/man/head_print.Rd |only igraph-1.1.1/igraph/man/hrg-methods.Rd | 14 igraph-1.1.1/igraph/man/hrg.Rd | 14 igraph-1.1.1/igraph/man/hrg_tree.Rd | 14 igraph-1.1.1/igraph/man/hub_score.Rd | 12 igraph-1.1.1/igraph/man/identical_graphs.Rd | 5 igraph-1.1.1/igraph/man/igraph-attribute-combination.Rd | 13 igraph-1.1.1/igraph/man/igraph-dollar.Rd | 55 igraph-1.1.1/igraph/man/igraph-es-attributes.Rd | 65 igraph-1.1.1/igraph/man/igraph-es-indexing.Rd | 79 igraph-1.1.1/igraph/man/igraph-es-indexing2.Rd | 70 igraph-1.1.1/igraph/man/igraph-minus.Rd | 18 igraph-1.1.1/igraph/man/igraph-vs-attributes.Rd | 87 igraph-1.1.1/igraph/man/igraph-vs-indexing.Rd | 99 igraph-1.1.1/igraph/man/igraph-vs-indexing2.Rd | 68 igraph-1.1.1/igraph/man/igraph_demo.Rd | 11 igraph-1.1.1/igraph/man/igraph_options.Rd | 48 igraph-1.1.1/igraph/man/igraph_test.Rd | 3 igraph-1.1.1/igraph/man/igraph_version.Rd | 6 igraph-1.1.1/igraph/man/incident.Rd | 20 igraph-1.1.1/igraph/man/incident_edges.Rd | 20 igraph-1.1.1/igraph/man/indent_print.Rd |only igraph-1.1.1/igraph/man/intersection.Rd | 3 igraph-1.1.1/igraph/man/intersection.igraph.Rd | 14 igraph-1.1.1/igraph/man/intersection.igraph.es.Rd | 33 igraph-1.1.1/igraph/man/intersection.igraph.vs.Rd | 33 igraph-1.1.1/igraph/man/is_chordal.Rd | 13 igraph-1.1.1/igraph/man/is_dag.Rd | 6 igraph-1.1.1/igraph/man/is_degseq.Rd | 14 igraph-1.1.1/igraph/man/is_directed.Rd | 22 igraph-1.1.1/igraph/man/is_graphical.Rd | 14 igraph-1.1.1/igraph/man/is_igraph.Rd | 6 igraph-1.1.1/igraph/man/is_min_separator.Rd | 6 igraph-1.1.1/igraph/man/is_named.Rd | 7 igraph-1.1.1/igraph/man/is_printer_callback.Rd |only igraph-1.1.1/igraph/man/is_separator.Rd | 5 igraph-1.1.1/igraph/man/is_weighted.Rd | 7 igraph-1.1.1/igraph/man/isomorphic.Rd | 28 igraph-1.1.1/igraph/man/isomorphism_class.Rd | 26 igraph-1.1.1/igraph/man/isomorphisms.Rd | 28 igraph-1.1.1/igraph/man/ivs.Rd | 24 igraph-1.1.1/igraph/man/keeping_degseq.Rd | 15 igraph-1.1.1/igraph/man/knn.Rd | 16 igraph-1.1.1/igraph/man/laplacian_matrix.Rd | 7 igraph-1.1.1/igraph/man/layout.deprecated.Rd | 9 igraph-1.1.1/igraph/man/layout.fruchterman.reingold.grid.Rd | 3 igraph-1.1.1/igraph/man/layout.spring.Rd | 3 igraph-1.1.1/igraph/man/layout.svd.Rd | 3 igraph-1.1.1/igraph/man/layout_.Rd | 57 igraph-1.1.1/igraph/man/layout_as_bipartite.Rd | 64 igraph-1.1.1/igraph/man/layout_as_star.Rd | 66 igraph-1.1.1/igraph/man/layout_as_tree.Rd | 68 igraph-1.1.1/igraph/man/layout_in_circle.Rd | 63 igraph-1.1.1/igraph/man/layout_nicely.Rd | 62 igraph-1.1.1/igraph/man/layout_on_grid.Rd | 63 igraph-1.1.1/igraph/man/layout_on_sphere.Rd | 61 igraph-1.1.1/igraph/man/layout_randomly.Rd | 61 igraph-1.1.1/igraph/man/layout_with_dh.Rd | 63 igraph-1.1.1/igraph/man/layout_with_drl.Rd | 22 igraph-1.1.1/igraph/man/layout_with_fr.Rd | 69 igraph-1.1.1/igraph/man/layout_with_gem.Rd | 65 igraph-1.1.1/igraph/man/layout_with_graphopt.Rd | 64 igraph-1.1.1/igraph/man/layout_with_kk.Rd | 68 igraph-1.1.1/igraph/man/layout_with_lgl.Rd | 61 igraph-1.1.1/igraph/man/layout_with_mds.Rd | 66 igraph-1.1.1/igraph/man/layout_with_sugiyama.Rd | 67 igraph-1.1.1/igraph/man/local_scan.Rd | 5 igraph-1.1.1/igraph/man/make_.Rd | 3 igraph-1.1.1/igraph/man/make_bipartite_graph.Rd | 16 igraph-1.1.1/igraph/man/make_chordal_ring.Rd | 42 igraph-1.1.1/igraph/man/make_clusters.Rd | 5 igraph-1.1.1/igraph/man/make_de_bruijn_graph.Rd | 14 igraph-1.1.1/igraph/man/make_empty_graph.Rd | 43 igraph-1.1.1/igraph/man/make_full_bipartite_graph.Rd | 15 igraph-1.1.1/igraph/man/make_full_citation_graph.Rd | 44 igraph-1.1.1/igraph/man/make_full_graph.Rd | 46 igraph-1.1.1/igraph/man/make_graph.Rd | 43 igraph-1.1.1/igraph/man/make_kautz_graph.Rd | 13 igraph-1.1.1/igraph/man/make_lattice.Rd | 42 igraph-1.1.1/igraph/man/make_line_graph.Rd | 7 igraph-1.1.1/igraph/man/make_ring.Rd | 47 igraph-1.1.1/igraph/man/make_star.Rd | 43 igraph-1.1.1/igraph/man/make_tree.Rd | 43 igraph-1.1.1/igraph/man/match_vertices.Rd | 13 igraph-1.1.1/igraph/man/matching.Rd | 20 igraph-1.1.1/igraph/man/max_cardinality.Rd | 10 igraph-1.1.1/igraph/man/max_flow.Rd | 15 igraph-1.1.1/igraph/man/merge_coords.Rd | 60 igraph-1.1.1/igraph/man/min_cut.Rd | 5 igraph-1.1.1/igraph/man/min_separators.Rd | 3 igraph-1.1.1/igraph/man/min_st_separators.Rd | 10 igraph-1.1.1/igraph/man/modularity.igraph.Rd | 17 igraph-1.1.1/igraph/man/motifs.Rd | 7 igraph-1.1.1/igraph/man/mst.Rd | 16 igraph-1.1.1/igraph/man/neighbors.Rd | 20 igraph-1.1.1/igraph/man/nexus.Rd | 42 igraph-1.1.1/igraph/man/norm_coords.Rd | 68 igraph-1.1.1/igraph/man/normalize.Rd | 66 igraph-1.1.1/igraph/man/page_rank.Rd | 20 igraph-1.1.1/igraph/man/path.Rd | 17 igraph-1.1.1/igraph/man/permute.Rd | 10 igraph-1.1.1/igraph/man/pipe.Rd | 6 igraph-1.1.1/igraph/man/plot.igraph.Rd | 13 igraph-1.1.1/igraph/man/plot.sir.Rd | 13 igraph-1.1.1/igraph/man/plot_dendrogram.communities.Rd | 13 igraph-1.1.1/igraph/man/plot_dendrogram.igraphHRG.Rd | 7 igraph-1.1.1/igraph/man/plus-.igraph.Rd | 17 igraph-1.1.1/igraph/man/power_centrality.Rd | 18 igraph-1.1.1/igraph/man/predict_edges.Rd | 16 igraph-1.1.1/igraph/man/print.igraph.Rd | 26 igraph-1.1.1/igraph/man/print.igraph.es.Rd | 34 igraph-1.1.1/igraph/man/print.igraph.vs.Rd | 36 igraph-1.1.1/igraph/man/print.igraphHRG.Rd | 35 igraph-1.1.1/igraph/man/print.igraphHRGConsensus.Rd | 15 igraph-1.1.1/igraph/man/printer_callback.Rd |only igraph-1.1.1/igraph/man/printr.Rd |only igraph-1.1.1/igraph/man/r_pal.Rd | 7 igraph-1.1.1/igraph/man/radius.Rd | 3 igraph-1.1.1/igraph/man/random_walk.Rd | 5 igraph-1.1.1/igraph/man/read_graph.Rd | 20 igraph-1.1.1/igraph/man/reciprocity.Rd | 5 igraph-1.1.1/igraph/man/rep.igraph.Rd | 7 igraph-1.1.1/igraph/man/rev.igraph.es.Rd | 35 igraph-1.1.1/igraph/man/rev.igraph.vs.Rd | 35 igraph-1.1.1/igraph/man/rewire.Rd | 7 igraph-1.1.1/igraph/man/rglplot.Rd | 11 igraph-1.1.1/igraph/man/running_mean.Rd | 7 igraph-1.1.1/igraph/man/sample_.Rd | 3 igraph-1.1.1/igraph/man/sample_bipartite.Rd | 15 igraph-1.1.1/igraph/man/sample_correlated_gnp.Rd | 3 igraph-1.1.1/igraph/man/sample_correlated_gnp_pair.Rd | 3 igraph-1.1.1/igraph/man/sample_degseq.Rd | 15 igraph-1.1.1/igraph/man/sample_dirichlet.Rd | 5 igraph-1.1.1/igraph/man/sample_dot_product.Rd | 12 igraph-1.1.1/igraph/man/sample_fitness.Rd | 10 igraph-1.1.1/igraph/man/sample_fitness_pl.Rd | 10 igraph-1.1.1/igraph/man/sample_forestfire.Rd | 12 igraph-1.1.1/igraph/man/sample_gnm.Rd | 12 igraph-1.1.1/igraph/man/sample_gnp.Rd | 12 igraph-1.1.1/igraph/man/sample_grg.Rd | 15 igraph-1.1.1/igraph/man/sample_growing.Rd | 15 igraph-1.1.1/igraph/man/sample_hierarchical_sbm.Rd | 12 igraph-1.1.1/igraph/man/sample_hrg.Rd | 15 igraph-1.1.1/igraph/man/sample_islands.Rd | 12 igraph-1.1.1/igraph/man/sample_k_regular.Rd | 12 igraph-1.1.1/igraph/man/sample_last_cit.Rd | 15 igraph-1.1.1/igraph/man/sample_motifs.Rd | 8 igraph-1.1.1/igraph/man/sample_pa.Rd | 15 igraph-1.1.1/igraph/man/sample_pa_age.Rd | 16 igraph-1.1.1/igraph/man/sample_pref.Rd | 20 igraph-1.1.1/igraph/man/sample_sbm.Rd | 12 igraph-1.1.1/igraph/man/sample_seq.Rd | 13 igraph-1.1.1/igraph/man/sample_smallworld.Rd | 13 igraph-1.1.1/igraph/man/sample_sphere_surface.Rd | 5 igraph-1.1.1/igraph/man/sample_sphere_volume.Rd | 5 igraph-1.1.1/igraph/man/sample_traits_callaway.Rd | 9 igraph-1.1.1/igraph/man/scan_stat.Rd | 3 igraph-1.1.1/igraph/man/scg-method.Rd | 12 igraph-1.1.1/igraph/man/scg.Rd | 18 igraph-1.1.1/igraph/man/scg_eps.Rd | 14 igraph-1.1.1/igraph/man/scg_group.Rd | 16 igraph-1.1.1/igraph/man/scg_semi_proj.Rd | 17 igraph-1.1.1/igraph/man/sequential_pal.Rd | 7 igraph-1.1.1/igraph/man/set_edge_attr.Rd | 54 igraph-1.1.1/igraph/man/set_graph_attr.Rd | 54 igraph-1.1.1/igraph/man/set_vertex_attr.Rd | 54 igraph-1.1.1/igraph/man/shapes.Rd | 15 igraph-1.1.1/igraph/man/similarity.Rd | 14 igraph-1.1.1/igraph/man/simplified.Rd | 9 igraph-1.1.1/igraph/man/simplify.Rd | 13 igraph-1.1.1/igraph/man/sir.Rd | 23 igraph-1.1.1/igraph/man/spectrum.Rd | 13 igraph-1.1.1/igraph/man/split_join_distance.Rd | 3 igraph-1.1.1/igraph/man/srand.Rd | 3 igraph-1.1.1/igraph/man/st_cuts.Rd | 12 igraph-1.1.1/igraph/man/st_min_cuts.Rd | 12 igraph-1.1.1/igraph/man/stochastic_matrix.Rd | 15 igraph-1.1.1/igraph/man/strength.Rd | 12 igraph-1.1.1/igraph/man/sub-.igraph.Rd | 24 igraph-1.1.1/igraph/man/sub-sub-.igraph.Rd | 20 igraph-1.1.1/igraph/man/subcomponent.Rd | 10 igraph-1.1.1/igraph/man/subgraph.Rd | 11 igraph-1.1.1/igraph/man/subgraph_centrality.Rd | 15 igraph-1.1.1/igraph/man/subgraph_isomorphic.Rd | 31 igraph-1.1.1/igraph/man/subgraph_isomorphisms.Rd | 26 igraph-1.1.1/igraph/man/tail_of.Rd | 20 igraph-1.1.1/igraph/man/tkigraph.Rd | 9 igraph-1.1.1/igraph/man/tkplot.Rd | 55 igraph-1.1.1/igraph/man/topo_sort.Rd | 10 igraph-1.1.1/igraph/man/transitivity.Rd | 11 igraph-1.1.1/igraph/man/triad_census.Rd | 12 igraph-1.1.1/igraph/man/unfold_tree.Rd | 7 igraph-1.1.1/igraph/man/union.Rd | 3 igraph-1.1.1/igraph/man/union.igraph.Rd | 14 igraph-1.1.1/igraph/man/union.igraph.es.Rd | 33 igraph-1.1.1/igraph/man/union.igraph.vs.Rd | 33 igraph-1.1.1/igraph/man/unique.igraph.es.Rd | 33 igraph-1.1.1/igraph/man/unique.igraph.vs.Rd | 33 igraph-1.1.1/igraph/man/upgrade_graph.Rd | 3 igraph-1.1.1/igraph/man/vertex.Rd | 19 igraph-1.1.1/igraph/man/vertex_attr-set.Rd | 54 igraph-1.1.1/igraph/man/vertex_attr.Rd | 53 igraph-1.1.1/igraph/man/vertex_attr_names.Rd | 53 igraph-1.1.1/igraph/man/vertex_connectivity.Rd | 21 igraph-1.1.1/igraph/man/which_multiple.Rd | 19 igraph-1.1.1/igraph/man/which_mutual.Rd | 12 igraph-1.1.1/igraph/man/with_edge_.Rd | 9 igraph-1.1.1/igraph/man/with_graph_.Rd | 9 igraph-1.1.1/igraph/man/with_igraph_opt.Rd |only igraph-1.1.1/igraph/man/with_vertex_.Rd | 9 igraph-1.1.1/igraph/man/without_attr.Rd | 9 igraph-1.1.1/igraph/man/without_loops.Rd | 9 igraph-1.1.1/igraph/man/without_multiples.Rd | 9 igraph-1.1.1/igraph/man/write_graph.Rd | 14 igraph-1.1.1/igraph/src/CHOLMOD/Include/cholmod_blas.h | 2 igraph-1.1.1/igraph/src/DensityGrid.cpp | 17 igraph-1.1.1/igraph/src/DensityGrid_3d.cpp | 18 igraph-1.1.1/igraph/src/Makevars.in | 2 igraph-1.1.1/igraph/src/Makevars.win | 6 igraph-1.1.1/igraph/src/adjlist.c | 46 igraph-1.1.1/igraph/src/atlas-edges.h | 2 igraph-1.1.1/igraph/src/attributes.c | 8 igraph-1.1.1/igraph/src/bignum.h | 7 igraph-1.1.1/igraph/src/bipartite.c | 3 igraph-1.1.1/igraph/src/bliss |only igraph-1.1.1/igraph/src/bliss.cc | 409 +-- igraph-1.1.1/igraph/src/cattributes.c | 12 igraph-1.1.1/igraph/src/centrality.c | 8 igraph-1.1.1/igraph/src/cliquer |only igraph-1.1.1/igraph/src/cliques.c | 181 + igraph-1.1.1/igraph/src/clustertool.cpp | 11 igraph-1.1.1/igraph/src/cohesive_blocks.c | 7 igraph-1.1.1/igraph/src/community.c | 20 igraph-1.1.1/igraph/src/decomposition.c | 6 igraph-1.1.1/igraph/src/dotproduct.c | 2 igraph-1.1.1/igraph/src/drl_layout.cpp | 1 igraph-1.1.1/igraph/src/fast_community.c | 214 + igraph-1.1.1/igraph/src/feedback_arc_set.c | 54 igraph-1.1.1/igraph/src/flow.c | 7 igraph-1.1.1/igraph/src/foreign-dl-parser.c | 174 - igraph-1.1.1/igraph/src/foreign-dl-parser.y | 2 igraph-1.1.1/igraph/src/foreign-graphml.c | 15 igraph-1.1.1/igraph/src/foreign-pajek-parser.c | 187 - igraph-1.1.1/igraph/src/foreign-pajek-parser.y | 1 igraph-1.1.1/igraph/src/foreign.c | 11 igraph-1.1.1/igraph/src/games.c | 39 igraph-1.1.1/igraph/src/gengraph_box_list.h | 4 igraph-1.1.1/igraph/src/gengraph_definitions.h | 2 igraph-1.1.1/igraph/src/glet.c | 161 - igraph-1.1.1/igraph/src/igraph_cliquer.c |only igraph-1.1.1/igraph/src/igraph_cliquer.h |only igraph-1.1.1/igraph/src/igraph_math.h | 3 igraph-1.1.1/igraph/src/igraph_threading.h | 10 igraph-1.1.1/igraph/src/igraph_version.h | 8 igraph-1.1.1/igraph/src/include/igraph_adjlist.h | 126 - igraph-1.1.1/igraph/src/include/igraph_arpack.h | 40 igraph-1.1.1/igraph/src/include/igraph_array.h | 10 igraph-1.1.1/igraph/src/include/igraph_attributes.h | 194 - igraph-1.1.1/igraph/src/include/igraph_bipartite.h | 119 igraph-1.1.1/igraph/src/include/igraph_blas.h | 25 igraph-1.1.1/igraph/src/include/igraph_centrality.h | 277 +- igraph-1.1.1/igraph/src/include/igraph_cliques.h | 106 igraph-1.1.1/igraph/src/include/igraph_cocitation.h | 59 igraph-1.1.1/igraph/src/include/igraph_community.h | 269 +- igraph-1.1.1/igraph/src/include/igraph_complex.h | 131 - igraph-1.1.1/igraph/src/include/igraph_components.h | 45 igraph-1.1.1/igraph/src/include/igraph_constants.h | 11 igraph-1.1.1/igraph/src/include/igraph_constructors.h | 79 igraph-1.1.1/igraph/src/include/igraph_conversion.h | 51 igraph-1.1.1/igraph/src/include/igraph_datatype.h | 11 igraph-1.1.1/igraph/src/include/igraph_decls.h |only igraph-1.1.1/igraph/src/include/igraph_dqueue.h | 11 igraph-1.1.1/igraph/src/include/igraph_dqueue_pmt.h | 24 igraph-1.1.1/igraph/src/include/igraph_eigen.h | 92 igraph-1.1.1/igraph/src/include/igraph_embedding.h | 55 igraph-1.1.1/igraph/src/include/igraph_epidemics.h | 21 igraph-1.1.1/igraph/src/include/igraph_error.h | 46 igraph-1.1.1/igraph/src/include/igraph_flow.h | 209 - igraph-1.1.1/igraph/src/include/igraph_foreign.h | 93 igraph-1.1.1/igraph/src/include/igraph_games.h | 365 +-- igraph-1.1.1/igraph/src/include/igraph_graphlets.h | 51 igraph-1.1.1/igraph/src/include/igraph_heap.h | 10 igraph-1.1.1/igraph/src/include/igraph_heap_pmt.h | 18 igraph-1.1.1/igraph/src/include/igraph_hrg.h | 91 igraph-1.1.1/igraph/src/include/igraph_interface.h | 91 igraph-1.1.1/igraph/src/include/igraph_interrupt.h | 16 igraph-1.1.1/igraph/src/include/igraph_iterators.h | 145 - igraph-1.1.1/igraph/src/include/igraph_lapack.h | 79 igraph-1.1.1/igraph/src/include/igraph_layout.h | 245 -- igraph-1.1.1/igraph/src/include/igraph_matching.h | 41 igraph-1.1.1/igraph/src/include/igraph_matrix.h | 11 igraph-1.1.1/igraph/src/include/igraph_matrix_pmt.h | 122 - igraph-1.1.1/igraph/src/include/igraph_memory.h | 14 igraph-1.1.1/igraph/src/include/igraph_microscopic_update.h | 57 igraph-1.1.1/igraph/src/include/igraph_mixing.h | 39 igraph-1.1.1/igraph/src/include/igraph_motifs.h | 61 igraph-1.1.1/igraph/src/include/igraph_neighborhood.h | 30 igraph-1.1.1/igraph/src/include/igraph_nongraph.h | 45 igraph-1.1.1/igraph/src/include/igraph_operators.h | 53 igraph-1.1.1/igraph/src/include/igraph_paths.h | 207 - igraph-1.1.1/igraph/src/include/igraph_progress.h | 22 igraph-1.1.1/igraph/src/include/igraph_psumtree.h | 30 igraph-1.1.1/igraph/src/include/igraph_qsort.h | 18 igraph-1.1.1/igraph/src/include/igraph_random.h | 66 igraph-1.1.1/igraph/src/include/igraph_scan.h | 71 igraph-1.1.1/igraph/src/include/igraph_separators.h | 35 igraph-1.1.1/igraph/src/include/igraph_spmatrix.h | 91 igraph-1.1.1/igraph/src/include/igraph_stack.h | 11 igraph-1.1.1/igraph/src/include/igraph_stack_pmt.h | 22 igraph-1.1.1/igraph/src/include/igraph_statusbar.h | 17 igraph-1.1.1/igraph/src/include/igraph_structural.h | 172 - igraph-1.1.1/igraph/src/include/igraph_strvector.h | 73 igraph-1.1.1/igraph/src/include/igraph_threading.h.in | 10 igraph-1.1.1/igraph/src/include/igraph_topology.h | 73 igraph-1.1.1/igraph/src/include/igraph_transitivity.h | 25 igraph-1.1.1/igraph/src/include/igraph_types.h | 32 igraph-1.1.1/igraph/src/include/igraph_vector.h | 19 igraph-1.1.1/igraph/src/include/igraph_vector_pmt.h | 136 - igraph-1.1.1/igraph/src/include/igraph_vector_ptr.h | 61 igraph-1.1.1/igraph/src/include/igraph_version.h.in | 6 igraph-1.1.1/igraph/src/include/igraph_visitor.h | 11 igraph-1.1.1/igraph/src/init.c |only igraph-1.1.1/igraph/src/lad.c | 17 igraph-1.1.1/igraph/src/layout.c | 6 igraph-1.1.1/igraph/src/layout_dh.c | 10 igraph-1.1.1/igraph/src/layout_fr.c | 9 igraph-1.1.1/igraph/src/layout_gem.c | 3 igraph-1.1.1/igraph/src/layout_kk.c | 79 igraph-1.1.1/igraph/src/lazyeval.c | 2 igraph-1.1.1/igraph/src/matching.c | 74 igraph-1.1.1/igraph/src/memory.c | 24 igraph-1.1.1/igraph/src/microscopic_update.c | 4 igraph-1.1.1/igraph/src/motifs.c | 72 igraph-1.1.1/igraph/src/paths.c | 5 igraph-1.1.1/igraph/src/pottsmodel_2.cpp | 2 igraph-1.1.1/igraph/src/prpack.cpp | 5 igraph-1.1.1/igraph/src/prpack/prpack_csc.h | 7 igraph-1.1.1/igraph/src/prpack/prpack_igraph_graph.cpp | 124 - igraph-1.1.1/igraph/src/prpack/prpack_solver.cpp | 1 igraph-1.1.1/igraph/src/rinterface.c | 115 igraph-1.1.1/igraph/src/rinterface_extra.c | 1 igraph-1.1.1/igraph/src/sbm.c | 6 igraph-1.1.1/igraph/src/scan.c | 6 igraph-1.1.1/igraph/src/separators.c | 6 igraph-1.1.1/igraph/src/simpleraytracer/RIgraphRay.cpp | 1 igraph-1.1.1/igraph/src/sparsemat.c | 67 igraph-1.1.1/igraph/src/structural_properties.c | 486 ++-- igraph-1.1.1/igraph/src/structural_properties_internal.h |only igraph-1.1.1/igraph/src/structure_generators.c | 41 igraph-1.1.1/igraph/src/topology.c | 117 igraph-1.1.1/igraph/src/triangles.c | 15 igraph-1.1.1/igraph/src/triangles_template.h | 10 igraph-1.1.1/igraph/src/triangles_template1.h | 10 igraph-1.1.1/igraph/src/uuid/gen_uuid.c | 20 igraph-1.1.1/igraph/src/vector.pmt | 5 igraph-1.1.1/igraph/src/vector_ptr.c | 5 igraph-1.1.1/igraph/tests |only 581 files changed, 9238 insertions(+), 10648 deletions(-)
Title: 'Blowfish' Password Hashing Algorithm
Description: Bindings to the 'blowfish' password hashing algorithm derived from
the 'OpenBSD' implementation.
Author: Jeroen Ooms [cre, aut],
Damien Miller [cph],
Niels Provos [cph]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between bcrypt versions 0.2 dated 2015-06-18 and 1.0 dated 2017-07-16
bcrypt-0.2/bcrypt/src/bcrypt.c |only bcrypt-0.2/bcrypt/src/blowfish.c |only bcrypt-0.2/bcrypt/src/pybc_blf.h |only bcrypt-1.0/bcrypt/DESCRIPTION | 23 +++++++++++------------ bcrypt-1.0/bcrypt/MD5 | 14 ++++++++------ bcrypt-1.0/bcrypt/NAMESPACE | 2 +- bcrypt-1.0/bcrypt/man/bcrypt.Rd | 5 ++--- bcrypt-1.0/bcrypt/src/Makevars |only bcrypt-1.0/bcrypt/src/bcrypt |only bcrypt-1.0/bcrypt/src/register.c |only 10 files changed, 22 insertions(+), 22 deletions(-)
Title: Computing Weighted Topological Overlaps (wTO) & Consensus wTO
Network
Description: Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks (Nowick et al. (2009) <doi:10.1073/pnas.0911376106>) given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks.
Author: Deisy Morselli Gysi, Andre Voigt, Tiago Miranda Fragoso, Eivind Almaas and Katja Nowick.
Maintainer: Deisy Morselli Gysi <deisy@bioinf.uni-leipzig.de>
Diff between wTO versions 1.2.0 dated 2017-06-08 and 1.2.2 dated 2017-07-16
wTO-1.2.0/wTO/R/wTO.Complete.R |only wTO-1.2.2/wTO/DESCRIPTION | 11 ++- wTO-1.2.2/wTO/MD5 | 24 ++++---- wTO-1.2.2/wTO/NAMESPACE | 2 wTO-1.2.2/wTO/R/Correlation.Overlap.R | 76 +++++++------------------- wTO-1.2.2/wTO/R/Cut.off2.R | 99 +++++++++++++++++++--------------- wTO-1.2.2/wTO/R/NetVis.R | 20 ++++-- wTO-1.2.2/wTO/R/wTO.Complete2.R |only wTO-1.2.2/wTO/R/wTO.R | 4 - wTO-1.2.2/wTO/R/wTO.aux.each.R | 26 ++++---- wTO-1.2.2/wTO/R/wTO.in.line.R | 68 +++++++++++++---------- wTO-1.2.2/wTO/man/NetVis.Rd | 12 ++-- wTO-1.2.2/wTO/man/wTO.Complete.Rd | 10 ++- wTO-1.2.2/wTO/man/wTO.Rd | 4 - 14 files changed, 179 insertions(+), 177 deletions(-)
Title: Rarefaction Tool Kit
Description: Rarefy data, calculate diversity and plot the results.
Author: Paul Saary, Falk Hildebrand
Maintainer: Paul Saary <rtk@paulsaary.de>
Diff between rtk versions 0.2.5.1 dated 2017-04-19 and 0.2.5.2 dated 2017-07-16
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- build/partial.rdb |binary inst/CITATION | 20 ++++++++++++++++---- src/Matrix.cpp | 6 +++--- 5 files changed, 27 insertions(+), 15 deletions(-)