Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- fixed effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- statistical tests and trim-and-fill method to evaluate bias in meta-analysis;
- import data from 'RevMan 5';
- prediction interval, Hartung-Knapp and Paule-Mandel method for random effects model;
- cumulative meta-analysis and leave-one-out meta-analysis;
- meta-regression (if R package 'metafor' is installed);
- generalised linear mixed models (if R packages 'metafor', 'lme4', 'numDeriv', and 'BiasedUrn' are installed).
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between meta versions 4.8-2 dated 2017-05-24 and 4.8-3 dated 2017-07-22
DESCRIPTION | 8 ++--- MD5 | 72 ++++++++++++++++++++++++------------------------- NEWS | 39 ++++++++++++++++++++++++++ R/baujat.meta.R | 11 ++++--- R/ci.R | 38 +++++++++++++++++++------ R/forest-internal.R | 15 +++++----- R/forest.meta.R | 52 ++++++++++++++++++++++++++++------- R/funnel.meta.R | 11 +++++++ R/labbe.metabin.R | 9 ++++++ R/metabias.meta.R | 24 +++++++++++++++- R/metabin.R | 58 ++++++++++++++++++++++++++++++--------- R/metacont.R | 32 ++++++++++++++++++--- R/metacor.R | 32 ++++++++++++++++++--- R/metacum.R | 31 ++++++++++++++++++++- R/metagen.R | 44 ++++++++++++++++++++++------- R/metainc.R | 53 ++++++++++++++++++++++++++++-------- R/metainf.R | 27 ++++++++++++++++++ R/metaprop.R | 37 ++++++++++++++++++++----- R/metarate.R | 39 +++++++++++++++++++++----- R/metareg.R | 31 +++++++++++++++------ R/print.meta.R | 13 ++++++-- R/print.summary.meta.R | 2 - R/radial.meta.R | 15 ++++++++-- R/summary.meta.R | 4 +- R/trimfill.meta.R | 72 ++++++++++++++++++++++++++++++++++++++++++------- R/update.meta.R | 25 ++++++++++++++++- R/warnarg.R | 2 - R/xlab.R | 9 +++--- man/forest.Rd | 4 ++ man/metabin.Rd | 11 ++++--- man/metacont.Rd | 8 +++-- man/metacor.Rd | 11 ++++--- man/metagen.Rd | 7 +++- man/metainc.Rd | 6 ++-- man/metaprop.Rd | 11 ++++--- man/metarate.Rd | 7 +++- man/update.meta.Rd | 3 ++ 37 files changed, 686 insertions(+), 187 deletions(-)
Title: Wrap R Functions for Debugging and Parametric Programming
Description: Provides 'DebugFnW()' to capture function context on error for
debugging, and 'let()' which converts non-standard evaluation interfaces to
parametric standard evaluation interfaces.
Author: John Mount, Nina Zumel
Maintainer: John Mount <jmount@win-vector.com>
Diff between wrapr versions 0.2.0 dated 2017-07-08 and 0.4.0 dated 2017-07-22
wrapr-0.2.0/wrapr/man/letprep_lang.Rd |only wrapr-0.2.0/wrapr/man/letprep_str.Rd |only wrapr-0.4.0/wrapr/DESCRIPTION | 8 ++-- wrapr-0.4.0/wrapr/MD5 | 32 +++++++++--------- wrapr-0.4.0/wrapr/NAMESPACE | 2 + wrapr-0.4.0/wrapr/NEWS.md | 9 +++++ wrapr-0.4.0/wrapr/R/addNameCol.R |only wrapr-0.4.0/wrapr/R/bpipe.R |only wrapr-0.4.0/wrapr/R/let.R | 29 ++++++++++------ wrapr-0.4.0/wrapr/README.md | 26 ++++++++++++++ wrapr-0.4.0/wrapr/build/vignette.rds |binary wrapr-0.4.0/wrapr/inst/doc/CornerCases.html | 4 +- wrapr-0.4.0/wrapr/inst/doc/DebugFnW.html | 6 +-- wrapr-0.4.0/wrapr/inst/doc/SubstitutionModes.Rmd | 4 +- wrapr-0.4.0/wrapr/inst/doc/SubstitutionModes.html | 8 ++-- wrapr-0.4.0/wrapr/inst/doc/let.html | 4 +- wrapr-0.4.0/wrapr/man/add_name_column.Rd |only wrapr-0.4.0/wrapr/man/grapes-.-greater-than-grapes.Rd |only wrapr-0.4.0/wrapr/man/let.Rd | 6 ++- wrapr-0.4.0/wrapr/vignettes/SubstitutionModes.Rmd | 4 +- 20 files changed, 95 insertions(+), 47 deletions(-)
Title: Self Contained Units of Source Code
Description: Provides modules as an organizational unit for source code. Modules
enforce to be more rigorous when defining dependencies and have
a local search path. They can be used as a sub unit within packages
or in scripts.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz <wahani@gmail.com>
Diff between modules versions 0.5.0 dated 2016-11-02 and 0.6.0 dated 2017-07-22
DESCRIPTION | 15 +++-- LICENSE | 2 MD5 | 44 +++++++++------- NAMESPACE | 1 NEWS | 10 +++ R/class.R |only R/export.R |only R/expose.R |only R/extend.R |only R/import.R |only R/module-class.R | 44 +++++----------- R/module-coercion.R | 8 --- R/module-helper.R | 20 ++++--- R/module.R | 110 ++++-------------------------------------- R/use.R |only inst/doc/modulesInR.R | 31 +++++++---- inst/doc/modulesInR.Rmd | 44 ++++++++++++---- inst/doc/modulesInR.html | 44 ++++++++++------ man/module.Rd | 48 ++++++++++-------- man/modulecoerce.Rd | 1 man/utilityFunctions.Rd | 1 tests/testthat.R | 5 - tests/testthat/test-extend.R |only tests/testthat/test-lintr.R | 24 ++++----- tests/testthat/test-module.R | 4 - tests/testthat/test-pmodule.R |only vignettes/modulesInR.Rmd | 44 ++++++++++++---- 27 files changed, 245 insertions(+), 255 deletions(-)
Title: Tools for Data Manipulation
Description: An implementation of common higher order functions with syntactic
sugar for anonymous function. Provides also a link to 'dplyr' for common
transformations on data frames to work around non standard evaluation by
default.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz <wahani@gmail.com>
Diff between dat versions 0.2.0 dated 2017-04-21 and 0.3.0 dated 2017-07-22
DESCRIPTION | 9 +++----- LICENSE | 2 - MD5 | 28 ++++++++++++------------- NEWS | 4 +++ build/vignette.rds |binary inst/doc/Introduction.R | 2 - inst/doc/Introduction.Rmd | 2 - inst/doc/Introduction.html | 48 ++++++++++++++++++++++---------------------- inst/doc/performance.R | 8 +++---- inst/doc/performance.Rmd | 8 +++---- inst/doc/performance.html | 10 ++++----- tests/testthat.R | 5 +--- tests/testthat/test-lintr.R | 8 +++---- vignettes/Introduction.Rmd | 2 - vignettes/performance.Rmd | 8 +++---- 15 files changed, 73 insertions(+), 71 deletions(-)
Title: Standard Evaluation Interfaces for Common 'dplyr' Tasks
Description: The 'seplyr' (standard evaluation data.frame 'dplyr') package supplies
standard evaluation adapter methods for important common 'dplyr' methods
that currently have a non-standard programming interface. This allows
the analyst to use 'dplyr' to perform fundamental data transformation
steps such as arranging rows, grouping rows, aggregating selecting
columns without having to use learn the details of 'rlang'/'tidyeval'
non-standard evaluation and without continuing to rely on now
deprecated 'dplyr' "underscore verbs."
In addition the 'seplyr' package supplies several new "key operations
bound together" methods. These include 'group_summarize()' (which
combines grouping, arranging and calculation in an atomic unit),
'add_group_summaries()' (which joins grouped summaries into a 'data.frame'
in a well documented manner), and 'add_group_indices()' (which adds
per-group identifies to a 'data.frame' without depending on row-order).
Author: John Mount
Maintainer: John Mount <jmount@win-vector.com>
Diff between seplyr versions 0.1.0 dated 2017-07-15 and 0.1.1 dated 2017-07-22
DESCRIPTION | 8 + MD5 | 87 ++++++++++++------ NAMESPACE | 24 ++++ NEWS.md | 9 + R/add_group_summaries.R | 2 R/add_rank_indices.R |only R/arrange_se.R | 17 ++- R/distinct_se.R | 4 R/filter_se.R |only R/group_by_se.R | 9 + R/group_indices_se.R | 2 R/group_summarize.R | 7 + R/in_group_indices.R |only R/mutate_se.R |only R/namedMapBuilder.R |only R/package.R | 8 + R/rename_se.R | 44 ++++++++- R/select_se.R | 40 +++++++- R/summarize_se.R |only R/tally.R |only R/transmute_se.R |only README.md | 193 +++++++++++++++++++++++----------------- build/vignette.rds |binary inst/doc/named_map_builder.R |only inst/doc/named_map_builder.Rmd |only inst/doc/named_map_builder.html |only inst/doc/rename_se.R |only inst/doc/rename_se.Rmd |only inst/doc/rename_se.html |only inst/doc/seplyr.R | 37 ++++++- inst/doc/seplyr.Rmd | 110 +++++++++++++++------- inst/doc/seplyr.html | 191 ++++++++++++++++++++++----------------- inst/doc/using_seplyr.R |only inst/doc/using_seplyr.Rmd |only inst/doc/using_seplyr.html |only man/add_count_se.Rd |only man/add_group_sub_indices.Rd |only man/add_group_summaries.Rd | 2 man/add_rank_indices.Rd |only man/add_tally_se.Rd |only man/arrange_se.Rd | 12 +- man/colon-equals.Rd |only man/count_se.Rd |only man/deselect.Rd |only man/distinct_se.Rd | 5 - man/filter_se.Rd |only man/group_by_se.Rd | 10 +- man/group_indices_se.Rd | 3 man/group_summarize.Rd | 5 - man/mutate_se.Rd |only man/rename_mp.Rd |only man/rename_se.Rd | 15 ++- man/select_se.Rd | 10 +- man/seplyr.Rd | 8 + man/summarize_se.Rd |only man/tally_se.Rd |only man/transmute_se.Rd |only vignettes/named_map_builder.Rmd |only vignettes/rename_se.Rmd |only vignettes/seplyr.Rmd | 110 +++++++++++++++------- vignettes/using_seplyr.Rmd |only 61 files changed, 652 insertions(+), 320 deletions(-)
Title: Plotting Methods for 'simmer'
Description: A set of plotting methods for 'simmer' trajectories and
simulations.
Author: Iñaki Ucar [aut, cph, cre],
Bart Smeets [aut, cph]
Maintainer: Iñaki Ucar <i.ucar86@gmail.com>
Diff between simmer.plot versions 0.1.9 dated 2017-03-15 and 0.1.10 dated 2017-07-22
DESCRIPTION | 8 - MD5 | 28 ++--- NEWS.md | 8 + R/plot.trajectory.R | 10 - R/plot_arrivals.R | 4 R/plot_attributes.R | 2 R/plot_resources.R | 39 ++----- R/utils.R | 3 build/vignette.rds |binary inst/doc/plot.simmer.Rmd | 2 inst/doc/plot.simmer.html | 18 +-- inst/doc/plot.trajectory.html | 10 - tests/testthat/test-plot-trajectory.R | 4 vignettes/includes/trajectory.svg | 175 ++++++++++++++++------------------ vignettes/plot.simmer.Rmd | 2 15 files changed, 155 insertions(+), 158 deletions(-)
Title: Generalized Autoregressive Score Models
Description: Simulate, estimate and forecast using univariate and multivariate GAS models.
Author: Leopoldo Catania [aut,cre], Kris Boudt [ctb], David Ardia [ctb]
Maintainer: Leopoldo Catania <leopoldo.catania@uniroma2.it>
Diff between GAS versions 0.2.1 dated 2017-06-12 and 0.2.3 dated 2017-07-22
GAS-0.2.1/GAS/inst/ExtensionTests/run_SimulateGAS.R |only GAS-0.2.1/GAS/inst/doc/GAS_vignette_0.2.1.Rnw |only GAS-0.2.1/GAS/inst/doc/GAS_vignette_0.2.1.pdf |only GAS-0.2.1/GAS/inst/doc/sink_PART_II_R3.4.0_darwin15.6.0.txt |only GAS-0.2.1/GAS/inst/doc/sink_PART_II_R3.4.0_linux-gnu.txt |only GAS-0.2.1/GAS/inst/doc/sink_PART_II_R3.4.0_mingw32.txt |only GAS-0.2.1/GAS/inst/doc/sink_PART_I_R3.4.0_darwin15.6.0.txt |only GAS-0.2.1/GAS/inst/doc/sink_PART_I_R3.4.0_linux-gnu.txt |only GAS-0.2.1/GAS/inst/doc/sink_PART_I_R3.4.0_mingw32.txt |only GAS-0.2.1/GAS/src/GAS_init.c |only GAS-0.2.1/GAS/vignettes/GAS_vignette_0.2.1.Rnw |only GAS-0.2.3/GAS/ChangeLog | 12 GAS-0.2.3/GAS/DESCRIPTION | 11 GAS-0.2.3/GAS/MD5 | 112 ++--- GAS-0.2.3/GAS/NAMESPACE | 1 GAS-0.2.3/GAS/R/BackTest.R | 6 GAS-0.2.3/GAS/R/ClassMethods.R | 224 +++++----- GAS-0.2.3/GAS/R/ConfidenceBands.R | 46 +- GAS-0.2.3/GAS/R/Distributions.R | 15 GAS-0.2.3/GAS/R/Estimate.R | 24 - GAS-0.2.3/GAS/R/Figures.R | 264 ++++++------ GAS-0.2.3/GAS/R/Forecast.R | 95 ++-- GAS-0.2.3/GAS/R/Inference.R | 4 GAS-0.2.3/GAS/R/Likelihood.R | 15 GAS-0.2.3/GAS/R/ParNames.R | 34 - GAS-0.2.3/GAS/R/ParameterConstraints.R | 28 - GAS-0.2.3/GAS/R/RcppExports.R | 76 +-- GAS-0.2.3/GAS/R/Simulate.R | 4 GAS-0.2.3/GAS/R/StartingValues.R | 72 +-- GAS-0.2.3/GAS/R/Testing.R | 63 +- GAS-0.2.3/GAS/R/Utils.R | 30 - GAS-0.2.3/GAS/build/partial.rdb |binary GAS-0.2.3/GAS/build/vignette.rds |binary GAS-0.2.3/GAS/inst/CITATION | 2 GAS-0.2.3/GAS/inst/ExtensionTests/run_Score.R | 18 GAS-0.2.3/GAS/inst/ExtensionTests/run_Simulate.R |only GAS-0.2.3/GAS/inst/ExtensionTests/run_TestThat.R |only GAS-0.2.3/GAS/inst/doc/AddNewDistribution.pdf |binary GAS-0.2.3/GAS/inst/doc/GAS_vignette_0.2.3.Rnw |only GAS-0.2.3/GAS/inst/doc/GAS_vignette_0.2.3.pdf |only GAS-0.2.3/GAS/inst/doc/Linux |only GAS-0.2.3/GAS/inst/doc/OSX |only GAS-0.2.3/GAS/inst/doc/Windows |only GAS-0.2.3/GAS/man/GAS-package.Rd | 4 GAS-0.2.3/GAS/man/MultiGASFit.Rd | 15 GAS-0.2.3/GAS/man/UniGASFit.Rd | 14 GAS-0.2.3/GAS/src/DistWrap.cpp | 8 GAS-0.2.3/GAS/src/Mapping.cpp | 48 ++ GAS-0.2.3/GAS/src/RcppExports.cpp | 124 +++-- GAS-0.2.3/GAS/src/ScoreWrap.cpp | 2 GAS-0.2.3/GAS/src/Utils.cpp | 36 - GAS-0.2.3/GAS/src/Utils.h | 6 GAS-0.2.3/GAS/src/ghskt.cpp |only GAS-0.2.3/GAS/src/ghskt.h |only GAS-0.2.3/GAS/src/mvt.cpp | 8 GAS-0.2.3/GAS/src/snorm.cpp | 2 GAS-0.2.3/GAS/src/sstd.cpp | 2 GAS-0.2.3/GAS/tests/testthat/test_Simulate.R | 4 GAS-0.2.3/GAS/vignettes/Figure1.pdf |binary GAS-0.2.3/GAS/vignettes/GAS_vignette_0.2.3.Rnw |only 60 files changed, 804 insertions(+), 625 deletions(-)
Title: Combine and Export Data Frames
Description: Functions to combine data.frames in ways that require additional effort in
base R, and to add metadata (id, title, ...) that can be used for printing and
xlsx export. The 'Tatoo_report' class is provided as a
convenient helper to write several such tables to a workbook, one table per
worksheet.
Author: Stefan Fleck [aut, cre]
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>
Diff between tatoo versions 1.0.6 dated 2017-06-05 and 1.0.7 dated 2017-07-22
tatoo-1.0.6/tatoo/R/tatoo.R |only tatoo-1.0.7/tatoo/DESCRIPTION | 8 tatoo-1.0.7/tatoo/MD5 | 79 ++-- tatoo-1.0.7/tatoo/NAMESPACE | 5 tatoo-1.0.7/tatoo/NEWS.md | 12 tatoo-1.0.7/tatoo/R/Composite_table.R | 281 +++++++++++++--- tatoo-1.0.7/tatoo/R/Mashed_table.R | 32 - tatoo-1.0.7/tatoo/R/Stacked_table.R | 10 tatoo-1.0.7/tatoo/R/Tagged_table.R | 24 - tatoo-1.0.7/tatoo/R/Tatoo_table.R | 4 tatoo-1.0.7/tatoo/R/as_workbook.R | 12 tatoo-1.0.7/tatoo/R/save_xlsx.R | 4 tatoo-1.0.7/tatoo/R/tatoo-package.R |only tatoo-1.0.7/tatoo/R/utils-hammr.R | 63 +++ tatoo-1.0.7/tatoo/R/utils.R | 16 tatoo-1.0.7/tatoo/README.md | 38 +- tatoo-1.0.7/tatoo/build/vignette.rds |binary tatoo-1.0.7/tatoo/inst/doc/tatoo.Rmd | 10 tatoo-1.0.7/tatoo/inst/doc/tatoo.html | 14 tatoo-1.0.7/tatoo/man/Composite_table.Rd | 4 tatoo-1.0.7/tatoo/man/Mashed_table.Rd | 4 tatoo-1.0.7/tatoo/man/Stacked_table.Rd | 4 tatoo-1.0.7/tatoo/man/Tagged_table.Rd | 6 tatoo-1.0.7/tatoo/man/as.data.table.Composite_table.Rd | 2 tatoo-1.0.7/tatoo/man/as_Composite_table.Rd | 50 ++ tatoo-1.0.7/tatoo/man/as_multinames.Rd |only tatoo-1.0.7/tatoo/man/as_workbook.Rd | 8 tatoo-1.0.7/tatoo/man/assign_tt_meta.Rd | 2 tatoo-1.0.7/tatoo/man/cmash.Rd | 8 tatoo-1.0.7/tatoo/man/flip_names.Rd |only tatoo-1.0.7/tatoo/man/is_class.Rd | 4 tatoo-1.0.7/tatoo/man/multinames.Rd | 4 tatoo-1.0.7/tatoo/man/print.TT_meta.Rd | 4 tatoo-1.0.7/tatoo/man/print_several_tables.Rd | 6 tatoo-1.0.7/tatoo/man/sanitize_excel_sheet_names.Rd | 4 tatoo-1.0.7/tatoo/man/tatoo.Rd | 40 -- tatoo-1.0.7/tatoo/man/tatoo_table.Rd | 4 tatoo-1.0.7/tatoo/man/tt_meta.Rd | 2 tatoo-1.0.7/tatoo/man/vec_prioritise.Rd |only tatoo-1.0.7/tatoo/man/write_worksheet.Rd | 6 tatoo-1.0.7/tatoo/tests/testthat/test_Composite_table.R | 87 ++++ tatoo-1.0.7/tatoo/tests/testthat/test_Tagged_table.R | 2 tatoo-1.0.7/tatoo/vignettes/tatoo.Rmd | 10 43 files changed, 632 insertions(+), 241 deletions(-)
Title: NPLS Regression with L1 Penalization
Description: Tools for performing variable selection in three-way data using N-PLS
in combination with L1 penalization. The N-PLS model (Rasmus Bro, 1996
<DOI:10.1002/(SICI)1099-128X(199601)10:1%3C47::AID-CEM400%3E3.0.CO;2-C>) is the
natural extension of PLS (Partial Least Squares) to N-way structures, and tries
to maximize the covariance between X and Y data arrays. The package also adds
variable selection through L1 penalization.
Author: David Hervas
Maintainer: David Hervas <ddhervas@yahoo.es>
Diff between sNPLS versions 0.1.8 dated 2017-05-07 and 0.2.0 dated 2017-07-22
DESCRIPTION | 6 +++--- MD5 | 21 +++++++++++---------- NAMESPACE | 1 + R/sNPLS_fit.R | 39 +++++++++++++++++++++++++++------------ man/plot.sNPLS.Rd | 6 +++--- man/plot_T.Rd | 2 +- man/plot_U.Rd | 2 +- man/plot_Wj.Rd | 2 +- man/plot_Wk.Rd | 2 +- man/plot_time.Rd | 4 +++- man/plot_variables.Rd |only man/repeat_cv.Rd | 2 +- 12 files changed, 53 insertions(+), 34 deletions(-)
Title: Generalized Correlations and Initial Causal Path
Description: Since causal paths from data are important for all sciences, the
package provides sophisticated functions. The idea is simply
that if X causes Y (path: X to Y) then non-deterministic variation in X
is more "original or independent" than similar variation in Y. We compare
two flipped kernel regressions: X=f(Y, Z) and Y=g(X,Z), where Z are control
variables. Our first two criteria compare absolute gradients (Cr1) and
absolute residuals (Cr2), both quantified by stochastic dominance of four
orders (SD1 to SD4). Our third criterion (Cr3) expects X to be better able
to predict Y than the other way around using generalized partial correlation
If |r*(x|y)|> |r*(y|x)| it suggests that y is more likely
the "kernel cause" of x. The usual partial correlations are generalized for
the asymmetric matrix of r*'s developed here.
Partial correlations help asses effect of x on y after removing the effect of a
set of variables.
The package provides additional tools for causal assessment,
for printing the causal directions in a clear, comprehensive compact summary form,
for matrix algebra, for "outlier detection", and for numerical integration by the
trapezoidal rule, stochastic dominance, etc.
The package has functions for bootstrap-based statistical inference and one
for a heuristic t-test.
Author: Prof. H. D. Vinod, Fordham University, NY.
Maintainer: H. D. Vinod <vinod@fordham.edu>
Diff between generalCorr versions 1.0.5 dated 2017-06-16 and 1.0.6 dated 2017-07-22
DESCRIPTION | 8 ++-- MD5 | 56 +++++++++++++++++----------------- NEWS | 6 +++ R/bigfp.R | 2 - R/bootPairs.R | 2 + R/causeSummary.R | 7 ++-- R/comp_portfo2.R | 17 ++++++---- R/kern.R | 2 - R/naTriplet.R | 2 - R/pcause.R | 2 - R/silentMtx.R | 29 +++++++++++------ R/silentPairs.R | 3 + R/someCPairs.R | 2 - R/somePairs.R | 2 - R/wtdpapb.R | 60 ++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/generalCorr-vignette.pdf |binary inst/doc/generalCorr-vignette2.pdf |binary man/bigfp.Rd | 2 - man/bootPairs.Rd | 2 + man/causeSummary.Rd | 7 ++-- man/comp_portfo2.Rd | 16 +++++++-- man/kern.Rd | 3 + man/pcause.Rd | 2 - man/silentMtx.Rd | 31 +++++++++++-------- man/silentPairs.Rd | 3 + man/someCPairs.Rd | 2 - man/somePairs.Rd | 2 - man/wtdpapb.Rd | 8 ++-- 29 files changed, 160 insertions(+), 118 deletions(-)
Title: Kinetic Evaluation of Chemical Degradation Data
Description: Calculation routines based on the FOCUS Kinetics Report (2006,
2014). Includes a function for conveniently defining differential equation
models, model solution based on eigenvalues if possible or using numerical
solvers and a choice of the optimisation methods made available by the 'FME'
package. If a C compiler (on windows: 'Rtools') is installed, differential
equation models are solved using compiled C functions. Please note that no
warranty is implied for correctness of results or fitness for a particular
purpose.
Author: Johannes Ranke [aut, cre, cph],
Katrin Lindenberger [ctb],
René Lehmann [ctb],
Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke <jranke@uni-bremen.de>
Diff between mkin versions 0.9.45 dated 2016-12-08 and 0.9.45.2 dated 2017-07-22
DESCRIPTION | 10 MD5 | 62 ++--- NEWS.md | 6 R/max_twa_parent.R |only README.md | 8 build/vignette.rds |binary inst/doc/FOCUS_D.html | 24 +- inst/doc/FOCUS_L.html | 122 +++++----- inst/doc/FOCUS_Z.pdf |binary inst/doc/compiled_models.R | 64 ++--- inst/doc/compiled_models.Rmd | 81 +++---- inst/doc/compiled_models.html | 381 +++++++++------------------------ inst/doc/mkin.html | 16 - inst/doc/twa.Rmd |only inst/doc/twa.html |only man/DFOP.solution.Rd | 2 man/FOCUS_2006_DFOP_ref_A_to_B.Rd | 2 man/FOCUS_2006_FOMC_ref_A_to_F.Rd | 2 man/FOCUS_2006_HS_ref_A_to_F.Rd | 2 man/FOCUS_2006_SFO_ref_A_to_F.Rd | 2 man/FOCUS_2006_datasets.Rd | 2 man/FOMC.solution.Rd | 2 man/HS.solution.Rd | 2 man/SFO.solution.Rd | 2 man/SFORB.solution.Rd | 2 man/max_twa_parent.Rd |only man/mkinerrmin.Rd | 2 man/mkinmod.Rd | 2 man/summary.mkinfit.Rd | 2 tests/testthat/test_FOMC_ill-defined.R | 2 tests/testthat/test_parent_only.R | 60 ++--- tests/testthat/test_twa.R |only vignettes/compiled_models.Rmd | 81 +++---- vignettes/references.bib | 8 vignettes/twa.Rmd |only 35 files changed, 394 insertions(+), 557 deletions(-)
Title: A Language to Facilitate Simulation and Visualization of
Two-Dimensional Dynamical Systems
Description: An expressive language to facilitate simulation and visualization
of two-dimensional dynamical systems. The basic elements of the language are
a model wrapping around a function(x,y) which outputs a list(x
= xprime, y = yprime), and a range. The language supports three
types of visual objects: visualizations, features, and backgrounds. Visualizations, including dots and arrows,
depict the behavior of the dynamical system over the entire range.
Features display
user-defined curves and points, and their images under the system.
Backgrounds define and color regions of interest, such as basins of attraction.
The language
can also approximate attractors and their basins through simulation.
Author: Charles Stein [aut, cre],
Seth Fogarty [aut]
Maintainer: Charles Stein <cstein1@trinity.edu>
Diff between dsmodels versions 1.0.0 dated 2016-11-11 and 1.1.0 dated 2017-07-22
dsmodels-1.0.0/dsmodels/R/dsguessing.R |only dsmodels-1.0.0/dsmodels/man/guessattractors.Rd |only dsmodels-1.0.0/dsmodels/man/guessregions.Rd |only dsmodels-1.1.0/dsmodels/DESCRIPTION | 33 +-- dsmodels-1.1.0/dsmodels/MD5 | 109 ++++++------- dsmodels-1.1.0/dsmodels/NAMESPACE | 6 dsmodels-1.1.0/dsmodels/R/axeslabel.R | 39 +++- dsmodels-1.1.0/dsmodels/R/dsarrows.R | 2 dsmodels-1.1.0/dsmodels/R/dscurve.R | 94 +++++++---- dsmodels-1.1.0/dsmodels/R/dsdots.R | 2 dsmodels-1.1.0/dsmodels/R/dsmodel.R | 174 +++++++++++++++++---- dsmodels-1.1.0/dsmodels/R/dspoint.R | 67 ++++---- dsmodels-1.1.0/dsmodels/R/dsrange.R | 24 +- dsmodels-1.1.0/dsmodels/R/dsregion.R | 6 dsmodels-1.1.0/dsmodels/R/dssimulation.R |only dsmodels-1.1.0/dsmodels/README.md | 55 +++--- dsmodels-1.1.0/dsmodels/man/NaNRemove.Rd | 1 dsmodels-1.1.0/dsmodels/man/background.Rd | 1 dsmodels-1.1.0/dsmodels/man/boolpos.Rd | 1 dsmodels-1.1.0/dsmodels/man/cash-.dsproto.Rd | 1 dsmodels-1.1.0/dsmodels/man/colorVector.Rd | 1 dsmodels-1.1.0/dsmodels/man/ds-add.Rd | 1 dsmodels-1.1.0/dsmodels/man/dsarrows.Rd | 3 dsmodels-1.1.0/dsmodels/man/dscurve.Rd | 50 +++--- dsmodels-1.1.0/dsmodels/man/dsdots.Rd | 3 dsmodels-1.1.0/dsmodels/man/dsmodel.Rd | 38 ++++ dsmodels-1.1.0/dsmodels/man/dspoint.Rd | 20 +- dsmodels-1.1.0/dsmodels/man/dsproto.Rd | 10 - dsmodels-1.1.0/dsmodels/man/dsrange.Rd | 14 + dsmodels-1.1.0/dsmodels/man/dsregion.Rd | 10 - dsmodels-1.1.0/dsmodels/man/facade.Rd | 1 dsmodels-1.1.0/dsmodels/man/feature.Rd | 1 dsmodels-1.1.0/dsmodels/man/features.Rd | 1 dsmodels-1.1.0/dsmodels/man/findFixedPoint.Rd | 9 - dsmodels-1.1.0/dsmodels/man/findNearestPoint.Rd | 5 dsmodels-1.1.0/dsmodels/man/is.background.Rd | 1 dsmodels-1.1.0/dsmodels/man/is.curve.Rd | 1 dsmodels-1.1.0/dsmodels/man/is.discretizedrange.Rd | 1 dsmodels-1.1.0/dsmodels/man/is.dots.Rd | 1 dsmodels-1.1.0/dsmodels/man/is.dsarrows.Rd | 1 dsmodels-1.1.0/dsmodels/man/is.dsimage.Rd | 3 dsmodels-1.1.0/dsmodels/man/is.dspoint.Rd | 1 dsmodels-1.1.0/dsmodels/man/is.dsproto.Rd | 1 dsmodels-1.1.0/dsmodels/man/is.dsregion.Rd | 1 dsmodels-1.1.0/dsmodels/man/is.facade.Rd | 1 dsmodels-1.1.0/dsmodels/man/is.feature.Rd | 1 dsmodels-1.1.0/dsmodels/man/is.model.Rd | 1 dsmodels-1.1.0/dsmodels/man/is.range.Rd | 1 dsmodels-1.1.0/dsmodels/man/is.visualization.Rd | 1 dsmodels-1.1.0/dsmodels/man/is.xlabel.Rd | 1 dsmodels-1.1.0/dsmodels/man/is.ylabel.Rd | 1 dsmodels-1.1.0/dsmodels/man/pnt.Rd | 3 dsmodels-1.1.0/dsmodels/man/pointsToList.Rd | 5 dsmodels-1.1.0/dsmodels/man/safe.apply.Rd |only dsmodels-1.1.0/dsmodels/man/simattractors.Rd |only dsmodels-1.1.0/dsmodels/man/simbasins.Rd |only dsmodels-1.1.0/dsmodels/man/visualization.Rd | 1 dsmodels-1.1.0/dsmodels/man/xlabel.Rd | 17 +- dsmodels-1.1.0/dsmodels/man/ylabel.Rd | 17 +- 59 files changed, 519 insertions(+), 324 deletions(-)
Title: Brazilian Economic Time Series
Description: It provides access to and information about the most important
Brazilian economic time series - from the Getulio Vargas Foundation <http://portal.fgv.br/en>,
the Central Bank of Brazil <http://www.bcb.gov.br> and the Brazilian Institute of Geography
and Statistics <http://www.ibge.gov.br>. It also presents tools for managing, analysing (e.g.
generating dynamic reports with a complete analysis of a series) and exporting
these time series.
Author: Pedro Costa Ferreira [aut, cre],
Talitha Speranza [aut],
Jonatha Azevedo [aut],
Fernando Teixeira [aut]
Maintainer: Pedro Costa Ferreira <pedro.guilherme@fgv.br>
Diff between BETS versions 0.2.1 dated 2017-04-30 and 0.3.0 dated 2017-07-22
BETS-0.2.1/BETS/R/draw.animal_spirits.R |only BETS-0.2.1/BETS/R/draw.lab_mrkt.R |only BETS-0.2.1/BETS/inst/fecomercio.csv |only BETS-0.2.1/BETS/inst/logo_sentiment.png |only BETS-0.2.1/BETS/inst/pib_comps.csv |only BETS-0.2.1/BETS/inst/pib_vars.csv |only BETS-0.2.1/BETS/inst/sentiment_dashboard.Rmd |only BETS-0.2.1/BETS/inst/sondagem_fgv.csv |only BETS-0.2.1/BETS/man/draw.animal_spirits.Rd |only BETS-0.2.1/BETS/man/draw.lab_mrkt.Rd |only BETS-0.3.0/BETS/DESCRIPTION | 32 +- BETS-0.3.0/BETS/MD5 | 209 ++++++++++------ BETS-0.3.0/BETS/NAMESPACE | 192 ++++++++------- BETS-0.3.0/BETS/R/BETS.R | 10 BETS-0.3.0/BETS/R/BETS.addin_pt.R | 4 BETS-0.3.0/BETS/R/BETS.chart.R | 189 ++++++++++++-- BETS-0.3.0/BETS/R/BETS.dashboard.R | 51 +++- BETS-0.3.0/BETS/R/BETS.get.R | 28 +- BETS-0.3.0/BETS/R/BETS.search.R | 11 BETS-0.3.0/BETS/R/BETS.sidra.get.R |only BETS-0.3.0/BETS/R/BETS.sidra.search.R |only BETS-0.3.0/BETS/R/BETS.t_test.R | 4 BETS-0.3.0/BETS/R/BETS.ur_test.R | 4 BETS-0.3.0/BETS/R/chart.add_basic.R |only BETS-0.3.0/BETS/R/chart.add_extra.R |only BETS-0.3.0/BETS/R/chart.add_notes.R |only BETS-0.3.0/BETS/R/connection.R |only BETS-0.3.0/BETS/R/draw.cap_utl.R | 1 BETS-0.3.0/BETS/R/draw.cdb.R |only BETS-0.3.0/BETS/R/draw.cei.R |only BETS-0.3.0/BETS/R/draw.conf_lvl.R | 1 BETS-0.3.0/BETS/R/draw.eap.R |only BETS-0.3.0/BETS/R/draw.ei_comps.R | 4 BETS-0.3.0/BETS/R/draw.ei_vars.R | 24 + BETS-0.3.0/BETS/R/draw.gdp_comps.R | 13 - BETS-0.3.0/BETS/R/draw.gdp_mon.R |only BETS-0.3.0/BETS/R/draw.gdp_unemp.R | 4 BETS-0.3.0/BETS/R/draw.gdp_vars.R | 28 +- BETS-0.3.0/BETS/R/draw.generic.R |only BETS-0.3.0/BETS/R/draw.iie_br.R | 1 BETS-0.3.0/BETS/R/draw.indprod.R |only BETS-0.3.0/BETS/R/draw.ipca.R |only BETS-0.3.0/BETS/R/draw.lab_coin.R |only BETS-0.3.0/BETS/R/draw.lab_lead.R |only BETS-0.3.0/BETS/R/draw.lei.R |only BETS-0.3.0/BETS/R/draw.misery_index.R | 48 +++ BETS-0.3.0/BETS/R/draw.selic.R |only BETS-0.3.0/BETS/R/draw.sent_ind.R |only BETS-0.3.0/BETS/R/draw.survey.R | 1 BETS-0.3.0/BETS/R/draw.ulc.R |only BETS-0.3.0/BETS/R/draw.unemp.R |only BETS-0.3.0/BETS/R/draw.vargdp.R |only BETS-0.3.0/BETS/R/get.data.frame.R | 1 BETS-0.3.0/BETS/R/get.series.bacen.R | 5 BETS-0.3.0/BETS/R/msg.R | 1 BETS-0.3.0/BETS/R/sidra.aux.R |only BETS-0.3.0/BETS/build |only BETS-0.3.0/BETS/inst/analysis_GRNN.Rmd | 13 - BETS-0.3.0/BETS/inst/analysis_SARIMA.Rmd | 7 BETS-0.3.0/BETS/inst/business_cycle_dashboard.Rmd |only BETS-0.3.0/BETS/inst/cei.csv | 263 ++++++++++++++++++++ BETS-0.3.0/BETS/inst/cei_comps.csv |only BETS-0.3.0/BETS/inst/cei_vars.csv |only BETS-0.3.0/BETS/inst/custom_dashboard.Rmd |only BETS-0.3.0/BETS/inst/doc |only BETS-0.3.0/BETS/inst/ei_vars.csv | 2 BETS-0.3.0/BETS/inst/lei.csv | 265 ++++++++++++++++++++- BETS-0.3.0/BETS/inst/lei_comps.csv |only BETS-0.3.0/BETS/inst/lei_vars.csv |only BETS-0.3.0/BETS/inst/logo_business.png |only BETS-0.3.0/BETS/inst/logo_custom.png |only BETS-0.3.0/BETS/inst/logo_ibre.png |only BETS-0.3.0/BETS/inst/logo_situation.png |only BETS-0.3.0/BETS/inst/macro_situation_dashboard.Rmd |only BETS-0.3.0/BETS/inst/mon_pib_comps.csv |only BETS-0.3.0/BETS/inst/mon_pib_vars.csv |only BETS-0.3.0/BETS/inst/text.txt |only BETS-0.3.0/BETS/inst/text2.txt |only BETS-0.3.0/BETS/man/BETS.Rd | 77 +++--- BETS-0.3.0/BETS/man/BETS.addin_en.Rd | 25 - BETS-0.3.0/BETS/man/BETS.addin_pt.Rd | 25 - BETS-0.3.0/BETS/man/BETS.chart.Rd | 178 ++++++++------ BETS-0.3.0/BETS/man/BETS.corrgram.Rd | 67 ++--- BETS-0.3.0/BETS/man/BETS.dashboard.Rd | 82 ++++-- BETS-0.3.0/BETS/man/BETS.deflate.Rd | 49 +-- BETS-0.3.0/BETS/man/BETS.dummy.Rd | 129 +++++----- BETS-0.3.0/BETS/man/BETS.get.Rd | 91 +++---- BETS-0.3.0/BETS/man/BETS.grnn.test.Rd | 71 ++--- BETS-0.3.0/BETS/man/BETS.grnn.train.Rd | 81 +++--- BETS-0.3.0/BETS/man/BETS.normalize.Rd | 45 +-- BETS-0.3.0/BETS/man/BETS.predict.Rd | 85 +++--- BETS-0.3.0/BETS/man/BETS.report.Rd | 195 +++++++-------- BETS-0.3.0/BETS/man/BETS.save.Rd | 47 +-- BETS-0.3.0/BETS/man/BETS.save.sas.Rd | 65 ++--- BETS-0.3.0/BETS/man/BETS.save.spss.Rd | 59 ++-- BETS-0.3.0/BETS/man/BETS.save.stata.Rd | 65 ++--- BETS-0.3.0/BETS/man/BETS.search.Rd | 260 ++++++++++---------- BETS-0.3.0/BETS/man/BETS.sidra.get.Rd |only BETS-0.3.0/BETS/man/BETS.sidra.search.Rd |only BETS-0.3.0/BETS/man/BETS.std_resid.Rd | 45 +-- BETS-0.3.0/BETS/man/BETS.t_test.Rd | 71 ++--- BETS-0.3.0/BETS/man/BETS.ur_test.Rd | 49 +-- BETS-0.3.0/BETS/man/chart.add_basic.Rd |only BETS-0.3.0/BETS/man/chart.add_extra.Rd |only BETS-0.3.0/BETS/man/chart.add_notes.Rd |only BETS-0.3.0/BETS/man/check.series.Rd | 39 +-- BETS-0.3.0/BETS/man/connection.Rd |only BETS-0.3.0/BETS/man/draw.cap_utl.Rd | 32 +- BETS-0.3.0/BETS/man/draw.cdb.Rd |only BETS-0.3.0/BETS/man/draw.cei.Rd |only BETS-0.3.0/BETS/man/draw.conf_lvl.Rd | 32 +- BETS-0.3.0/BETS/man/draw.eap.Rd |only BETS-0.3.0/BETS/man/draw.ei_comps.Rd | 29 +- BETS-0.3.0/BETS/man/draw.ei_vars.Rd | 32 +- BETS-0.3.0/BETS/man/draw.gdp_comps.Rd | 32 +- BETS-0.3.0/BETS/man/draw.gdp_mon.Rd |only BETS-0.3.0/BETS/man/draw.gdp_unemp.Rd | 32 +- BETS-0.3.0/BETS/man/draw.gdp_vars.Rd | 32 +- BETS-0.3.0/BETS/man/draw.generic.Rd |only BETS-0.3.0/BETS/man/draw.iie_br.Rd | 32 +- BETS-0.3.0/BETS/man/draw.indprod.Rd |only BETS-0.3.0/BETS/man/draw.ipca.Rd |only BETS-0.3.0/BETS/man/draw.lab_coin.Rd |only BETS-0.3.0/BETS/man/draw.lab_lead.Rd |only BETS-0.3.0/BETS/man/draw.lei.Rd |only BETS-0.3.0/BETS/man/draw.misery_index.Rd | 32 +- BETS-0.3.0/BETS/man/draw.selic.Rd |only BETS-0.3.0/BETS/man/draw.sent_ind.Rd |only BETS-0.3.0/BETS/man/draw.survey.Rd | 38 +-- BETS-0.3.0/BETS/man/draw.ulc.Rd |only BETS-0.3.0/BETS/man/draw.unemp.Rd |only BETS-0.3.0/BETS/man/draw.vargdp.Rd |only BETS-0.3.0/BETS/man/get.data.frame.Rd | 42 +-- BETS-0.3.0/BETS/man/get.series.bacen.Rd | 51 +--- BETS-0.3.0/BETS/man/msg.Rd | 50 ++- BETS-0.3.0/BETS/man/sidra.aux.Rd |only BETS-0.3.0/BETS/vignettes |only 137 files changed, 2332 insertions(+), 1450 deletions(-)
Title: Influential Case Detection Methods for Factor Analysis and
Structural Equation Models
Description: Tools for detecting and summarize influential cases that
can affect exploratory and confirmatory factor analysis models as well as
structural equation models more generally.
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between faoutlier versions 0.7.1 dated 2017-06-14 and 0.7.2 dated 2017-07-22
DESCRIPTION | 6 +++--- MD5 | 41 +++++++++++++++++++++-------------------- R/GOF.R | 10 ++++++++-- R/LD.R | 10 ++++++++-- R/faoutlier.R | 27 +++++++++++++++++++++++++++ R/forward.search.R | 9 +++++++++ R/gCD.R | 10 ++++++++-- R/obs.resid.R | 10 ++++++++-- R/robustMD.R | 10 ++++++++-- R/setClusters.R | 9 +++++++++ build |only inst/CITATION | 4 +++- man/GOF.Rd | 9 +++++++-- man/LD.Rd | 9 +++++++-- man/faoutlier.Rd | 9 +++++++++ man/forward.search.Rd | 9 +++++++++ man/gCD.Rd | 9 +++++++-- man/holzinger.Rd | 9 +++++++++ man/holzinger.outlier.Rd | 9 +++++++++ man/obs.resid.Rd | 9 +++++++-- man/robustMD.Rd | 9 +++++++-- man/setCluster.Rd | 9 +++++++++ 22 files changed, 192 insertions(+), 44 deletions(-)