Title: Genetic Algorithm for Wind Farm Layout Optimization
Description: The genetic algorithm is designed to optimize small wind farms consisting
of up to 50 turbines. The algorithm works with a fixed amount of turbines, a fixed
rotor radius and a mean wind speed value for every incoming wind direction.
If required, it can include a terrain effect model which downloads an
'SRTM' elevation model automatically and loads a Corine Land Cover raster,
which has to be downloaded previously.
Further information can be found in the description of the function 'windfarmGA'.
To start an optimization run, either the function 'windfarmGA' or 'genAlgo' can
be used. The function 'windfarmGA' checks the user inputs interactively and then
runs the function 'genAlgo'. If the input parameters are already known, an
optimization can be run directly via the function 'genAlgo'.
Their output is identical.
Author: Sebastian Gatscha
Maintainer: Sebastian Gatscha <sebastian_gatscha@gmx.at>
Diff between windfarmGA versions 1.1 dated 2017-07-09 and 1.1.1 dated 2017-07-27
DESCRIPTION | 11 ++++++----- MD5 | 13 +++++++------ NAMESPACE | 3 ++- R/HexaTex.R | 9 ++++++--- R/PlotWindfarmGA.R | 2 +- R/leafPlot.R | 20 +++++++++----------- inst/extdata/cclraster.rda |only man/HexaTex.Rd | 1 + 8 files changed, 32 insertions(+), 27 deletions(-)
Title: Approximate String Matching and String Distance Functions
Description: Implements an approximate string matching version of R's native
'match' function. Can calculate various string distances based on edits
(Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment), qgrams (q-
gram, cosine, jaccard distance) or heuristic metrics (Jaro, Jaro-Winkler). An
implementation of soundex is provided as well. Distances can be computed between
character vectors while taking proper care of encoding or between integer
vectors representing generic sequences.
Author: Mark van der Loo [aut, cre],
Jan van der Laan [ctb],
R Core Team [ctb],
Nick Logan [ctb]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between stringdist versions 0.9.4.4 dated 2016-12-16 and 0.9.4.5 dated 2017-07-27
DESCRIPTION | 10 +++--- MD5 | 53 ++++++++++++++++++----------------- NAMESPACE | 2 - NEWS | 7 ++++ R/amatch.R | 19 ++++++++---- R/seqdist.R | 16 ++++++---- R/stringdist.R | 22 +++++++++----- man/amatch.Rd | 10 ++++-- man/phonetic.Rd | 1 man/printable_ascii.Rd | 1 man/qgrams.Rd | 2 - man/seq_amatch.Rd | 10 ++++-- man/seq_dist.Rd | 10 ++++-- man/seq_qgrams.Rd | 1 man/seq_sim.Rd | 1 man/stringdist-encoding.Rd | 2 - man/stringdist-metrics.Rd | 2 - man/stringdist-parallelization.Rd | 2 - man/stringdist.Rd | 11 ++++--- man/stringsim.Rd | 1 src/R_register_native.c |only src/Rstringdist.c | 57 ++++++++++---------------------------- src/dist.h | 2 - src/jaro.c | 5 ++- src/qgram.c | 11 +++---- src/stringdist.c | 6 ++-- src/stringdist.h | 2 + tests/testthat/testStringdist.R | 17 +++++++++-- 28 files changed, 151 insertions(+), 132 deletions(-)
Title: Tools for Reading SDMX Data and Metadata
Description: Set of classes and methods to read data and metadata documents
exchanged through the Statistical Data and Metadata Exchange (SDMX) framework,
currently focusing on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre],
Matthieu Stigler [ctb],
Eric Persson [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between rsdmx versions 0.5-8 dated 2017-02-21 and 0.5-9 dated 2017-07-27
DESCRIPTION | 15 +++-- MD5 | 52 ++++++++++++------- NAMESPACE | 11 ++++ R/Class-SDMXAgency.R |only R/Class-SDMXAgencyScheme.R |only R/Class-SDMXDataStructureDefinition.R | 5 + R/Class-SDMXItemScheme.R |only R/Class-SDMXOrganisation.R |only R/Class-SDMXOrganisationScheme.R |only R/Class-SDMXOrganisationSchemes.R |only R/SDMXAgency-methods.R |only R/SDMXAgencyScheme-methods.R |only R/SDMXCodelist-methods.R | 2 R/SDMXDataStructureDefinition-methods.R | 1 R/SDMXHeader-methods.R | 2 R/SDMXOrganisation-methods.R |only R/SDMXOrganisationSchemes-methods.R |only R/SDMXServiceProvider-methods.R | 4 - R/SDMXStructureType-methods.R | 4 + R/readSDMX.R | 14 ----- R/rsdmx.R | 4 - README.md | 11 ++-- inst/extdata/SDMXOrganisationSchemes_Example_2.1.xml |only man/SDMXAgency.Rd |only man/SDMXAgencyScheme.Rd |only man/SDMXDataStructureDefinition.Rd | 3 + man/SDMXItemScheme.Rd |only man/SDMXOrganisation.Rd |only man/SDMXOrganisationScheme.Rd |only man/SDMXOrganisationSchemes.Rd |only man/readSDMX.Rd | 14 ----- man/rsdmx.Rd | 4 - tests/testthat/test_Data.R | 13 ++-- tests/testthat/test_DataStructureDefinition.R | 1 tests/testthat/test_Main_Helpers.R | 4 - tests/testthat/test_OrganisationSchemes.R |only 36 files changed, 93 insertions(+), 71 deletions(-)
Title: Diagnostic Plot and Multivariate Summary Statistics of Weighted
Samples from Importance Sampling
Description: Fast functions for effective sample size, weighted multivariate mean and variance computation,
and weight diagnostic plot for generic importance sampling type results.
Author: Jouni Helske
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between diagis versions 0.1.2 dated 2017-05-22 and 0.1.3 dated 2017-07-27
diagis-0.1.2/diagis/inst/doc/diagis.pdf |only diagis-0.1.2/diagis/src/init.c |only diagis-0.1.3/diagis/DESCRIPTION | 10 ++--- diagis-0.1.3/diagis/MD5 | 15 ++++---- diagis-0.1.3/diagis/NEWS | 5 ++ diagis-0.1.3/diagis/R/RcppExports.R | 30 ++++++++--------- diagis-0.1.3/diagis/R/means.R | 6 +-- diagis-0.1.3/diagis/build/vignette.rds |binary diagis-0.1.3/diagis/inst/doc/diagis.html |only diagis-0.1.3/diagis/src/RcppExports.cpp | 54 ++++++++++++++++++++++--------- 10 files changed, 74 insertions(+), 46 deletions(-)
Title: Three-Way Data Analysis Through Densities
Description: The three-way data consists of a set of variables measured on several groups of individuals. To each group is associated an estimated probability density function. The package provides tools to manage such data and functional methods (principal component analysis, multidimensional scaling, cluster analysis, discriminant analysis...) for such probability densities.
Author: Rachid Boumaza[aut, cre], Pierre Santagostini [aut], Smail Yousfi [aut], Gilles Hunault [ctb], Julie Bourbeillon [ctb], Besnik Pumo [ctb], Sabine Demotes-Mainard [aut]
Maintainer: Rachid Boumaza <rachid.boumaza@agrocampus-ouest.fr>
Diff between dad versions 2.0.0 dated 2016-12-16 and 3.0.0 dated 2017-07-27
dad-2.0.0/dad/man/is.folder.h.Rd |only dad-3.0.0/dad/DESCRIPTION | 12 ++-- dad-3.0.0/dad/MD5 | 81 ++++++++++++++++++++--------- dad-3.0.0/dad/NAMESPACE | 11 ++- dad-3.0.0/dad/R/as.data.frame.folderh.R | 31 ++++++++--- dad-3.0.0/dad/R/as.folder.folderh.R | 31 ++--------- dad-3.0.0/dad/R/as.folderh.R |only dad-3.0.0/dad/R/as.folderh.foldermtg.R |only dad-3.0.0/dad/R/fhclustd.R |only dad-3.0.0/dad/R/fmdsd.R | 3 + dad-3.0.0/dad/R/folder.R | 3 - dad-3.0.0/dad/R/fpcad.R | 3 + dad-3.0.0/dad/R/is.fhclustd.R |only dad-3.0.0/dad/R/is.foldermtg.R |only dad-3.0.0/dad/R/mtgcomponents.R |only dad-3.0.0/dad/R/mtgorder.R |only dad-3.0.0/dad/R/mtgrank.R |only dad-3.0.0/dad/R/plot.fhclustd.R |only dad-3.0.0/dad/R/print.fhclustd.R |only dad-3.0.0/dad/R/print.foldermtg.R |only dad-3.0.0/dad/R/read.mtg.R |only dad-3.0.0/dad/R/summary.folder.R | 2 dad-3.0.0/dad/R/summary.folderh.R | 3 - dad-3.0.0/dad/R/summary.foldermtg.R |only dad-3.0.0/dad/data/mtgplant1.rda |only dad-3.0.0/dad/data/mtgplant2.rda |only dad-3.0.0/dad/data/varietyleaves.rda |only dad-3.0.0/dad/inst |only dad-3.0.0/dad/man/as.data.frame.folderh.Rd | 30 +++------- dad-3.0.0/dad/man/as.folder.folderh.Rd | 23 +++----- dad-3.0.0/dad/man/as.folderh.Rd |only dad-3.0.0/dad/man/as.folderh.foldermtg.Rd |only dad-3.0.0/dad/man/castles.nondated.Rd | 2 dad-3.0.0/dad/man/dad-package.Rd | 42 ++++++++------- dad-3.0.0/dad/man/fdiscd.misclass.Rd | 4 - dad-3.0.0/dad/man/fdiscd.predict.Rd | 2 dad-3.0.0/dad/man/fhclustd.Rd |only dad-3.0.0/dad/man/fmdsd.Rd | 2 dad-3.0.0/dad/man/folder.Rd | 2 dad-3.0.0/dad/man/folderh.Rd | 5 - dad-3.0.0/dad/man/foldermtg.Rd |only dad-3.0.0/dad/man/fpcad.Rd | 2 dad-3.0.0/dad/man/is.fhclustd.Rd |only dad-3.0.0/dad/man/is.folderh.Rd |only dad-3.0.0/dad/man/is.foldermtg.Rd |only dad-3.0.0/dad/man/mean.folder.Rd | 2 dad-3.0.0/dad/man/mtgcomponents.Rd |only dad-3.0.0/dad/man/mtgorder.Rd |only dad-3.0.0/dad/man/mtgplant1.Rd |only dad-3.0.0/dad/man/mtgplant2.Rd |only dad-3.0.0/dad/man/mtgrank.Rd |only dad-3.0.0/dad/man/plot.fhclustd.Rd |only dad-3.0.0/dad/man/print.fhclustd.Rd |only dad-3.0.0/dad/man/print.foldermtg.Rd |only dad-3.0.0/dad/man/read.mtg.Rd |only dad-3.0.0/dad/man/summary.folder.Rd | 9 +-- dad-3.0.0/dad/man/summary.folderh.Rd | 9 +-- dad-3.0.0/dad/man/summary.foldermtg.Rd |only dad-3.0.0/dad/man/varietyleaves.Rd |only 59 files changed, 178 insertions(+), 136 deletions(-)
Title: Tidy Quantitative Financial Analysis
Description: Bringing financial analysis to the 'tidyverse'. The 'tidyquant'
package provides a convenient wrapper to various 'xts', 'zoo', 'quantmod', 'TTR'
and 'PerformanceAnalytics' package
functions and returns the objects in the tidy 'tibble' format. The main
advantage is being able to use quantitative functions with the 'tidyverse'
functions including 'purrr', 'dplyr', 'tidyr', 'ggplot2', 'lubridate', etc. See
the 'tidyquant' website for more information, documentation and examples.
Author: Matt Dancho [aut, cre],
Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between tidyquant versions 0.5.1 dated 2017-04-24 and 0.5.2 dated 2017-07-27
DESCRIPTION | 17 LICENSE | 4 MD5 | 182 - NAMESPACE | 174 - NEWS.md | 189 - R/as_tibble.R | 180 - R/as_xts.R | 169 - R/coord_date.R | 156 - R/data.R | 38 R/deprecated.R | 72 R/geom_bbands.R | 658 ++--- R/geom_chart.R | 466 +-- R/geom_ma.R | 488 +-- R/global_vars.R | 255 + R/quandl.R | 124 R/scale_manual.R | 288 +- R/sysdata.rda |binary R/theme_tq.R | 286 +- R/tidyquant.R | 90 R/tq_get.R | 1818 +++++++------- R/tq_mutate.R | 812 +++--- R/tq_performance.R | 630 ++-- R/tq_portfolio.R | 880 +++--- R/tq_stock_list.R | 663 ++--- R/tq_transmute.R | 775 +++--- R/utils-dates.R | 156 - R/utils-formatting.R | 98 README.md | 175 - build/vignette.rds |binary inst/doc/TQ00-introduction-to-tidyquant.R | 60 inst/doc/TQ00-introduction-to-tidyquant.Rmd | 248 - inst/doc/TQ00-introduction-to-tidyquant.html | 271 +- inst/doc/TQ01-core-functions-in-tidyquant.R | 418 +-- inst/doc/TQ01-core-functions-in-tidyquant.Rmd | 976 +++---- inst/doc/TQ01-core-functions-in-tidyquant.html | 1489 +++++------ inst/doc/TQ02-quant-integrations-in-tidyquant.R | 602 ++-- inst/doc/TQ02-quant-integrations-in-tidyquant.Rmd | 1106 ++++---- inst/doc/TQ02-quant-integrations-in-tidyquant.html | 1558 ++++++------ inst/doc/TQ03-scaling-and-modeling-with-tidyquant.R | 280 +- inst/doc/TQ03-scaling-and-modeling-with-tidyquant.Rmd | 652 ++--- inst/doc/TQ03-scaling-and-modeling-with-tidyquant.html | 976 +++---- inst/doc/TQ04-charting-with-tidyquant.R | 614 ++-- inst/doc/TQ04-charting-with-tidyquant.Rmd | 1031 +++----- inst/doc/TQ04-charting-with-tidyquant.html | 1058 +++----- inst/doc/TQ05-performance-analysis-with-tidyquant.R | 700 ++--- inst/doc/TQ05-performance-analysis-with-tidyquant.Rmd | 1388 +++++----- inst/doc/TQ05-performance-analysis-with-tidyquant.html | 2168 ++++++++--------- man/FANG.Rd | 58 man/as_tibble.Rd | 111 man/as_xts.Rd | 113 man/coord_x_date.Rd | 136 - man/deprecated.Rd | 84 man/geom_bbands.Rd | 340 +- man/geom_chart.Rd | 248 - man/geom_ma.Rd | 288 +- man/palette_tq.Rd | 46 man/quandl_api_key.Rd | 60 man/quandl_search.Rd | 72 man/scale_manual.Rd | 114 man/theme_tq.Rd | 98 man/tidyquant.Rd | 68 man/tq_get.Rd | 254 - man/tq_mutate.Rd | 314 +- man/tq_performance.Rd | 206 - man/tq_portfolio.Rd | 276 +- man/tq_stock_list.Rd | 138 - tests/testthat.R | 8 tests/testthat/test_as_tibble.R | 82 tests/testthat/test_as_xts.R | 70 tests/testthat/test_tq_exchange.R | 68 tests/testthat/test_tq_get_compound_getters.R | 152 - tests/testthat/test_tq_get_dividends.R | 56 tests/testthat/test_tq_get_economic_data.R | 72 tests/testthat/test_tq_get_exchange_rates.R | 61 tests/testthat/test_tq_get_financials.R | 70 tests/testthat/test_tq_get_key_ratios.R | 70 tests/testthat/test_tq_get_key_stats.R | 58 tests/testthat/test_tq_get_metal_prices.R | 72 tests/testthat/test_tq_get_splits.R | 56 tests/testthat/test_tq_get_stock_prices.R | 78 tests/testthat/test_tq_index.R | 98 tests/testthat/test_tq_mutate.R | 395 +-- tests/testthat/test_tq_performance.R | 114 tests/testthat/test_tq_portfolio.R | 152 - tests/testthat/test_tq_transmute.R | 346 +- tools/logo.png |binary vignettes/TQ00-introduction-to-tidyquant.Rmd | 248 - vignettes/TQ01-core-functions-in-tidyquant.Rmd | 976 +++---- vignettes/TQ02-quant-integrations-in-tidyquant.Rmd | 1106 ++++---- vignettes/TQ03-scaling-and-modeling-with-tidyquant.Rmd | 652 ++--- vignettes/TQ04-charting-with-tidyquant.Rmd | 1031 +++----- vignettes/TQ05-performance-analysis-with-tidyquant.Rmd | 1388 +++++----- 92 files changed, 17623 insertions(+), 18318 deletions(-)
Title: Tools for Reshaping Text
Description: Tools that can be used to reshape and restructure text data.
Author: Tyler Rinker [aut, cre],
Joran Elias [ctb],
Matthew Flickinger [ctb]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between textshape versions 1.0.2 dated 2017-02-22 and 1.3.0 dated 2017-07-27
textshape-1.0.2/textshape/inst/figure |only textshape-1.3.0/textshape/DESCRIPTION | 21 - textshape-1.3.0/textshape/MD5 | 111 +++---- textshape-1.3.0/textshape/NAMESPACE | 2 textshape-1.3.0/textshape/NEWS | 41 ++ textshape-1.3.0/textshape/R/bind_list.R | 2 textshape-1.3.0/textshape/R/combine.R | 2 textshape-1.3.0/textshape/R/split_match.R | 16 - textshape-1.3.0/textshape/R/split_match_regex_to_transcript.R |only textshape-1.3.0/textshape/R/split_sentence.R | 131 ++++++++ textshape-1.3.0/textshape/R/split_transcript.R | 19 - textshape-1.3.0/textshape/R/textshape-package.R | 24 + textshape-1.3.0/textshape/R/tidy_list.R | 8 textshape-1.3.0/textshape/R/utils.R | 51 --- textshape-1.3.0/textshape/README.md | 151 +++++----- textshape-1.3.0/textshape/data/DATA.rda |binary textshape-1.3.0/textshape/data/golden_rules.rda |only textshape-1.3.0/textshape/data/hamlet.rda |binary textshape-1.3.0/textshape/data/simple_dtm.rda |binary textshape-1.3.0/textshape/inst/CITATION | 4 textshape-1.3.0/textshape/inst/docs |only textshape-1.3.0/textshape/man/DATA.Rd | 1 textshape-1.3.0/textshape/man/bind_list.Rd | 1 textshape-1.3.0/textshape/man/bind_table.Rd | 1 textshape-1.3.0/textshape/man/bind_vector.Rd | 1 textshape-1.3.0/textshape/man/change_index.Rd | 1 textshape-1.3.0/textshape/man/column_to_rownames.Rd | 1 textshape-1.3.0/textshape/man/combine.Rd | 3 textshape-1.3.0/textshape/man/duration.Rd | 5 textshape-1.3.0/textshape/man/from_to.Rd | 5 textshape-1.3.0/textshape/man/golden_rules.Rd |only textshape-1.3.0/textshape/man/hamlet.Rd | 1 textshape-1.3.0/textshape/man/mtabulate.Rd | 9 textshape-1.3.0/textshape/man/simple_dtm.Rd | 1 textshape-1.3.0/textshape/man/split_index.Rd | 9 textshape-1.3.0/textshape/man/split_match.Rd | 15 textshape-1.3.0/textshape/man/split_match_regex_to_transcript.Rd |only textshape-1.3.0/textshape/man/split_portion.Rd | 1 textshape-1.3.0/textshape/man/split_run.Rd | 3 textshape-1.3.0/textshape/man/split_sentence.Rd | 21 + textshape-1.3.0/textshape/man/split_speaker.Rd | 1 textshape-1.3.0/textshape/man/split_token.Rd | 3 textshape-1.3.0/textshape/man/split_transcript.Rd | 11 textshape-1.3.0/textshape/man/split_word.Rd | 3 textshape-1.3.0/textshape/man/textshape.Rd | 3 textshape-1.3.0/textshape/man/tidy_colo_dtm.Rd | 3 textshape-1.3.0/textshape/man/tidy_dtm.Rd | 1 textshape-1.3.0/textshape/man/tidy_list.Rd | 1 textshape-1.3.0/textshape/man/tidy_table.Rd | 1 textshape-1.3.0/textshape/man/tidy_vector.Rd | 1 textshape-1.3.0/textshape/man/unique_pairs.Rd | 3 textshape-1.3.0/textshape/tools |only 52 files changed, 435 insertions(+), 258 deletions(-)
Title: R Interface to 'TensorFlow'
Description: Interface to 'TensorFlow' <https://www.tensorflow.org/>,
an open source software library for numerical computation using data
flow graphs. Nodes in the graph represent mathematical operations,
while the graph edges represent the multidimensional data arrays
(tensors) communicated between them. The flexible architecture allows
you to deploy computation to one or more 'CPUs' or 'GPUs' in a desktop,
server, or mobile device with a single 'API'. 'TensorFlow' was originally
developed by researchers and engineers working on the Google Brain Team
within Google's Machine Intelligence research organization for the
purposes of conducting machine learning and deep neural networks research,
but the system is general enough to be applicable in a wide variety
of other domains as well.
Author: JJ Allaire [aut, cre],
RStudio [cph, fnd],
Yuan Tang [aut, cph],
Dirk Eddelbuettel [ctb, cph],
Nick Golding [ctb, cph],
Google Inc. [ctb, cph] (Examples and Tutorials)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between tensorflow versions 0.9 dated 2017-06-25 and 1.3 dated 2017-07-27
DESCRIPTION | 11 +- MD5 | 39 ++++--- NAMESPACE | 7 + R/arguments.R | 11 +- R/flags.R | 109 ++++++++++++++++--- R/generics.R | 39 ++++++- R/imperative.R |only R/install.R | 191 ++++++++++++++++++++++++++++++----- R/modules.R | 8 - R/package.R | 7 - R/tensorboard.R | 90 ++++++++++------ R/utils.R | 6 - inst/examples/config |only man/install_tensorflow_extras.Rd |only man/parse_arguments.Rd | 10 + man/parse_flags.Rd | 53 ++++++++- man/tensorboard.Rd | 33 +++--- man/tensorflow.Rd | 2 man/tf.Rd | 8 - man/tf_imperative.Rd |only tests/testthat/test-extract-syntax.R | 28 +++++ tests/testthat/test-imperative.R |only tests/testthat/utils.R | 1 23 files changed, 512 insertions(+), 141 deletions(-)
Title: Relative Survival
Description: Various functions for relative survival analysis.
Author: Maja Pohar Perme [aut, cre], Klemen Pavlic [ctb]
Maintainer: Maja Pohar Perme <maja.pohar@mf.uni-lj.si>
Diff between relsurv versions 2.0-9 dated 2016-04-25 and 2.1 dated 2017-07-27
relsurv-2.0-9/relsurv/man/checktimes.Rd |only relsurv-2.1/relsurv/DESCRIPTION | 8 ++++---- relsurv-2.1/relsurv/INDEX | 5 +++-- relsurv-2.1/relsurv/MD5 | 25 +++++++++++++------------ relsurv-2.1/relsurv/NAMESPACE | 3 ++- relsurv-2.1/relsurv/R/cmprel.r | 20 ++++++++++---------- relsurv-2.1/relsurv/data/colrec.rda |binary relsurv-2.1/relsurv/data/rdata.rda |binary relsurv-2.1/relsurv/data/slopop.rda |binary relsurv-2.1/relsurv/man/cmprel.Rd | 12 ++++++------ relsurv-2.1/relsurv/man/plotcmprel.Rd | 6 +++--- relsurv-2.1/relsurv/man/rsdiff.Rd | 4 +--- relsurv-2.1/relsurv/man/summary.cmp.rel.Rd |only relsurv-2.1/relsurv/man/survfitrsadd.rd | 3 ++- relsurv-2.1/relsurv/src/init.c |only 15 files changed, 44 insertions(+), 42 deletions(-)
Title: Plot a Model's Response and Residuals
Description: Plot model surfaces for a wide variety of models
using partial dependence plots and other techniques.
Also plot model residuals and other information on the model.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between plotmo versions 3.3.3 dated 2017-05-05 and 3.3.4 dated 2017-07-27
DESCRIPTION | 10 ++-- MD5 | 69 +++++++++++++++--------------- NEWS | 6 ++ R/glmnet.R | 14 ++++-- R/lib.R | 10 +++- inst/doc/modguide.pdf |binary inst/doc/plotmo-notes.pdf |binary inst/doc/plotres-notes.pdf |binary inst/slowtests/make.bat | 2 inst/slowtests/test.c50.bat | 2 inst/slowtests/test.caret.bat | 2 inst/slowtests/test.center.bat | 2 inst/slowtests/test.dots.bat | 2 inst/slowtests/test.emma.Rout.save | 2 inst/slowtests/test.emma.bat | 2 inst/slowtests/test.fac.bat | 2 inst/slowtests/test.gbm.bat | 2 inst/slowtests/test.glmnet.R | 2 inst/slowtests/test.glmnet.Rout.save | 14 ++---- inst/slowtests/test.glmnet.bat | 2 inst/slowtests/test.glmnetUtils.R |only inst/slowtests/test.glmnetUtils.Rout.save |only inst/slowtests/test.glmnetUtils.bat |only inst/slowtests/test.linmod.bat | 2 inst/slowtests/test.ltut.bat | 2 inst/slowtests/test.non.earth.bat | 2 inst/slowtests/test.partdep.bat | 2 inst/slowtests/test.plotmo.Rout.save | 2 inst/slowtests/test.plotmo.args.bat | 2 inst/slowtests/test.plotmo.bat | 2 inst/slowtests/test.plotmo.dots.bat | 2 inst/slowtests/test.plotmo.x.bat | 2 inst/slowtests/test.plotmo3.R | 2 inst/slowtests/test.plotmo3.Rout.save | 2 inst/slowtests/test.plotmo3.bat | 2 inst/slowtests/test.plotres.bat | 2 inst/slowtests/test.printcall.bat | 2 37 files changed, 97 insertions(+), 76 deletions(-)
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word' and 'Microsoft PowerPoint' documents from R.
The package focus on tabular and graphical reporting from R; it also provides two functions
that let users get document content into data objects. A set of functions
lets add and remove images, tables and paragraphs of text in new or existing documents.
When working with 'PowerPoint' presentations, slides can be added or removed; shapes inside
slides can also be added or removed. When working with 'Word' documents, a cursor can be
used to help insert or delete content at a specific location in the document. The package
does not require any installation of Microsoft product to be able to write Microsoft files.
Author: David Gohel [aut, cre]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.1.4 dated 2017-06-06 and 0.1.5 dated 2017-07-27
DESCRIPTION | 12 +- MD5 | 90 +++++++++--------- NAMESPACE | 13 +- NEWS | 17 +++ R/RcppExports.R | 34 +++--- R/cot_objects.R | 6 - R/docx_add.R | 149 ++++++++++++++++++++++-------- R/docx_img.R | 4 R/fortify_docx.R | 7 - R/fortify_pptx.R | 4 R/fp_border.R | 23 ++++ R/fp_cell.R | 3 R/fp_checkers.R | 8 + R/fp_par.R | 4 R/fpar.R | 3 R/ppt_classes.R | 29 +++-- R/ppt_ph_add.R | 7 - R/ppt_ph_with.R | 2 R/read_docx.R | 18 +++ R/read_pptx.R | 34 +++--- R/relationship.R | 3 R/utils.R | 51 ++++------ README.md | 6 - build/vignette.rds |binary inst/doc/officer_reader.html | 42 ++++---- inst/doc/powerpoint.html | 161 ++++++++++++++++---------------- inst/doc/word.R | 10 +- inst/doc/word.Rmd | 14 +- inst/doc/word.html | 196 ++++++++++++++++++++-------------------- inst/template/chart.xml |only man/body_add_fpar.Rd | 4 man/body_end_section.Rd | 51 ++++++---- man/fp_border.Rd | 9 + src/RcppExports.cpp | 58 +++++++---- src/border.cpp | 40 ++++++-- src/border.h | 5 - src/registerDynamicSymbol.c | 72 +++++++------- src/talk_border.cpp |only src/talk_tcpr.cpp | 6 - src/tcpr.cpp | 2 src/tcpr.h | 2 tests/testthat/test-docx-add.R | 8 - tests/testthat/test-fp_border.R | 4 tests/testthat/test-fp_cell.R | 2 tests/testthat/test-fp_par.R | 2 vignettes/offcran/graphics.Rmd | 2 vignettes/word.Rmd | 14 +- 47 files changed, 713 insertions(+), 518 deletions(-)
Title: Simple Fisheries Stock Assessment Methods
Description: A variety of simple fish stock assessment methods.
Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between FSA versions 0.8.13 dated 2017-04-29 and 0.8.14 dated 2017-07-27
DESCRIPTION | 14 ++--- MD5 | 30 +++++------ NEWS.md | 12 +++- R/Summarize.R | 2 R/ageComparisons.R | 22 ++++---- R/nlsTracePlot.R | 30 +++++------ R/removal.R | 101 ++++++++++++++++++++++---------------- R/srStarts.R | 2 R/vbStarts.R | 2 man/ageBias.Rd | 2 man/nlsTracePlot.Rd | 30 +++++------ man/removal.Rd | 38 +++++++------- man/srStarts.Rd | 2 man/vbStarts.Rd | 2 tests/testthat/test_removal_MSG.R | 13 +++- tests/testthat/test_removal_OUT.R | 8 +++ 16 files changed, 178 insertions(+), 132 deletions(-)
Title: Independence Testing via Hilbert Schmidt Independence Criterion
Description: Contains an implementation of the
d-variable Hilbert Schmidt independence criterion
and several hypothesis tests based on it, as described
in Pfister et al. (2017) <doi:10.1111/rssb.12235>.
Author: Niklas Pfister and Jonas Peters
Maintainer: Niklas Pfister <pfister@stat.math.ethz.ch>
Diff between dHSIC versions 1.1 dated 2017-06-01 and 2.0 dated 2017-07-27
DESCRIPTION | 18 ++- MD5 | 20 ++-- NAMESPACE | 7 + R/RcppExports.R |only R/dhsic.R | 188 +++++++++++++++++++------------------ R/dhsic.test.R | 254 +++++++++++++++++++++++++-------------------------- build/partial.rdb |binary man/dHSIC-package.Rd | 6 - man/dhsic.Rd | 32 +++++- man/dhsic.test.Rd | 39 ++++++- src |only 11 files changed, 311 insertions(+), 253 deletions(-)
Title: Exploratory Chemometrics for Spectroscopy
Description: A collection of functions for top-down exploratory data analysis
of spectral data obtained via nuclear magnetic resonance (NMR), infrared (IR) or
Raman spectroscopy. Includes functions for plotting and inspecting spectra, peak
alignment, hierarchical cluster analysis (HCA), principal components analysis
(PCA) and model-based clustering. Robust methods appropriate for this type of
high-dimensional data are available. ChemoSpec is designed with metabolomics
data sets in mind, where the samples fall into groups such as treatment and
control. Graphical output is formatted consistently for publication quality
plots. ChemoSpec is intended to be very user friendly and help you get usable
results quickly. A vignette covering typical operations is available.
Author: Bryan A. Hanson [aut, cre],
Mike Bostock [cph, ctb] (author of the d3.js library used in
plotSpectraJS, http://d3js.org)
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between ChemoSpec versions 4.4.17 dated 2017-02-13 and 4.4.85 dated 2017-07-27
ChemoSpec-4.4.17/ChemoSpec/R/LoopThruSpectra.R |only ChemoSpec-4.4.85/ChemoSpec/DESCRIPTION | 12 - ChemoSpec-4.4.85/ChemoSpec/MD5 | 70 +++--- ChemoSpec-4.4.85/ChemoSpec/NEWS | 33 +++ ChemoSpec-4.4.85/ChemoSpec/R/aovPCAscores.R | 4 ChemoSpec-4.4.85/ChemoSpec/R/aov_pcaSpectra.R | 29 +- ChemoSpec-4.4.85/ChemoSpec/R/avgFacLvls.R | 10 ChemoSpec-4.4.85/ChemoSpec/R/baselineSpectra.R | 7 ChemoSpec-4.4.85/ChemoSpec/R/check4Gaps.R | 3 ChemoSpec-4.4.85/ChemoSpec/R/clupaSpectra.R | 8 ChemoSpec-4.4.85/ChemoSpec/R/files2SpectraObject.R | 125 +++++++---- ChemoSpec-4.4.85/ChemoSpec/R/groupNcolor.R | 72 +++--- ChemoSpec-4.4.85/ChemoSpec/R/loopThruSpectra.R |only ChemoSpec-4.4.85/ChemoSpec/R/normSpectra.R | 28 +- ChemoSpec-4.4.85/ChemoSpec/R/plotScores.R | 3 ChemoSpec-4.4.85/ChemoSpec/R/sampleDistSpectra.R | 25 +- ChemoSpec-4.4.85/ChemoSpec/R/sumSpectra.R | 13 - ChemoSpec-4.4.85/ChemoSpec/build/vignette.rds |binary ChemoSpec-4.4.85/ChemoSpec/data/SrE.IR.RData |binary ChemoSpec-4.4.85/ChemoSpec/data/SrE.NMR.RData |binary ChemoSpec-4.4.85/ChemoSpec/data/alignMUD.RData |binary ChemoSpec-4.4.85/ChemoSpec/data/metMUD1.RData |binary ChemoSpec-4.4.85/ChemoSpec/data/metMUD2.RData |binary ChemoSpec-4.4.85/ChemoSpec/inst/doc/ChemoSpec.R | 59 +---- ChemoSpec-4.4.85/ChemoSpec/inst/doc/ChemoSpec.Rnw | 189 ++++++++---------- ChemoSpec-4.4.85/ChemoSpec/inst/doc/ChemoSpec.pdf |binary ChemoSpec-4.4.85/ChemoSpec/man/aovPCAscores.Rd | 6 ChemoSpec-4.4.85/ChemoSpec/man/baselineSpectra.Rd | 1 ChemoSpec-4.4.85/ChemoSpec/man/clupaSpectra.Rd | 8 ChemoSpec-4.4.85/ChemoSpec/man/files2SpectraObject.Rd | 106 ++++++---- ChemoSpec-4.4.85/ChemoSpec/man/groupNcolor.Rd | 2 ChemoSpec-4.4.85/ChemoSpec/man/loopThruSpectra.Rd | 2 ChemoSpec-4.4.85/ChemoSpec/man/normSpectra.Rd | 27 +- ChemoSpec-4.4.85/ChemoSpec/man/plotScores.Rd | 3 ChemoSpec-4.4.85/ChemoSpec/man/sampleDistSpectra.Rd | 5 ChemoSpec-4.4.85/ChemoSpec/vignettes/ChemoSpec.Rnw | 189 ++++++++---------- ChemoSpec-4.4.85/ChemoSpec/vignettes/chemometrics.bib | 21 -- 37 files changed, 604 insertions(+), 456 deletions(-)
Title: Import XY-Data into R
Description: Provides access to the 'xylib' C library for to import xy
data from powder diffraction, spectroscopy and other experimental methods.
Author: Sebastian Kreutzer [aut, trl, cre],
Johannes Friedrich [aut],
RLum Team [ctb],
Marcin Wojdyr [cph] (C++ library 'xylib'),
Peng Zhang [cph] (C++ library 'xylib')
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>
Diff between rxylib versions 0.1.1 dated 2017-07-08 and 0.2.0 dated 2017-07-27
DESCRIPTION | 16 +-- MD5 | 33 ++++-- NAMESPACE | 4 NEWS | 12 ++ R/RcppExports.R | 18 +++ R/methods_rxylib.R |only R/read_xyData.R | 118 +++++++++++++++++++----- R/rxylib.R | 9 - inst/extdata/ExampleChiPlot.chi |only inst/extdata/TLSpectrum.xsyg |only man/methods_rxylib.Rd |only man/read_xyData.Rd | 25 ++++- man/rxylib-package.Rd | 30 +++++- src/Makevars | 2 src/RcppExports.cpp | 52 +++++++++- src/get_block_names.cpp |only src/get_meta_DataSet.cpp |only src/get_version.cpp |only src/read_data.cpp | 69 ++++++++++++-- src/xylib/xsyg.cpp | 183 +++++++++++++++++++++++++++++++++----- tests/testthat/test_read_xyData.R | 171 +++++++++++++++++++++++++++-------- 21 files changed, 607 insertions(+), 135 deletions(-)
Title: Foundations and Applications of Statistics Using R
Description: Data sets and utilities to accompany
"Foundations and Applications of Statistics: an Introduction
using R" (R Pruim, published by AMS, 2011), a text covering
topics from probability and mathematical statistics at an advanced
undergraduate level. R is integrated throughout, and access to all
the R code in the book is provided via the snippet function.
Author: Randall Pruim
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between fastR versions 1.1 dated 2016-07-07 and 0.10.3 dated 2017-07-27
fastR-0.10.3/fastR/.Rinstignore |only fastR-0.10.3/fastR/DESCRIPTION | 36 - fastR-0.10.3/fastR/MD5 | 758 ++++++++++++++++++++++++++-- fastR-0.10.3/fastR/NAMESPACE | 86 ++- fastR-0.10.3/fastR/R/col.fastR.R |only fastR-0.10.3/fastR/R/col.perc.R |only fastR-0.10.3/fastR/R/datasets.R |only fastR-0.10.3/fastR/R/fastR-internal.R |only fastR-0.10.3/fastR/R/fastR-package.R |only fastR-0.10.3/fastR/R/funplot.R |only fastR-0.10.3/fastR/R/funvec.R |only fastR-0.10.3/fastR/R/geolm.R |only fastR-0.10.3/fastR/R/givenOrder.R |only fastR-0.10.3/fastR/R/grid.identify.points.R |only fastR-0.10.3/fastR/R/make.rm.R |only fastR-0.10.3/fastR/R/multirandom.R |only fastR-0.10.3/fastR/R/nlmax.R |only fastR-0.10.3/fastR/R/ntigram.R |only fastR-0.10.3/fastR/R/panel.lm.R |only fastR-0.10.3/fastR/R/panel.smooth.R |only fastR-0.10.3/fastR/R/panel.xyplotpoints.R |only fastR-0.10.3/fastR/R/panel.xyplotsmooth.R |only fastR-0.10.3/fastR/R/pdfplot.R |only fastR-0.10.3/fastR/R/pmfhistogram.R |only fastR-0.10.3/fastR/R/pmfplot.R |only fastR-0.10.3/fastR/R/print.stemplot.R |only fastR-0.10.3/fastR/R/probplot.R |only fastR-0.10.3/fastR/R/snippet.R |only fastR-0.10.3/fastR/R/stemplot.R |only fastR-0.10.3/fastR/R/tdf.R |only fastR-0.10.3/fastR/R/to2d.R |only fastR-0.10.3/fastR/R/undocumented.R |only fastR-0.10.3/fastR/R/vaov.R |only fastR-0.10.3/fastR/R/vaov.formula.R |only fastR-0.10.3/fastR/R/wald.ci.R |only fastR-0.10.3/fastR/R/wilson.ci.R |only fastR-0.10.3/fastR/R/xplot.R |only fastR-0.10.3/fastR/README.md |only fastR-0.10.3/fastR/build |only fastR-0.10.3/fastR/data |only fastR-0.10.3/fastR/inst |only fastR-0.10.3/fastR/man/Jordan8687.Rd |only fastR-0.10.3/fastR/man/actgpa.Rd |only fastR-0.10.3/fastR/man/airlineArrival.Rd |only fastR-0.10.3/fastR/man/airpollution.Rd |only fastR-0.10.3/fastR/man/balldrop.Rd |only fastR-0.10.3/fastR/man/batting.Rd |only fastR-0.10.3/fastR/man/births78.Rd |only fastR-0.10.3/fastR/man/buckthorn.Rd |only fastR-0.10.3/fastR/man/bugs.Rd |only 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fastR-0.10.3/fastR/man/ncaa2010.Rd |only fastR-0.10.3/fastR/man/nfl2007.Rd |only fastR-0.10.3/fastR/man/nlmax.Rd |only fastR-0.10.3/fastR/man/noise.Rd |only fastR-0.10.3/fastR/man/palettes.Rd |only fastR-0.10.3/fastR/man/paperplanes.Rd |only fastR-0.10.3/fastR/man/pendulum.Rd |only fastR-0.10.3/fastR/man/petstress.Rd |only fastR-0.10.3/fastR/man/pigs.Rd |only fastR-0.10.3/fastR/man/pitching2005.Rd |only fastR-0.10.3/fastR/man/poison.Rd |only fastR-0.10.3/fastR/man/punting.Rd |only fastR-0.10.3/fastR/man/ratpoison.Rd |only fastR-0.10.3/fastR/man/rgolfballs.Rd |only fastR-0.10.3/fastR/man/rubberband.Rd |only fastR-0.10.3/fastR/man/scent.Rd |only fastR-0.10.3/fastR/man/snippet.Rd |only fastR-0.10.3/fastR/man/soap.Rd |only fastR-0.10.3/fastR/man/spheres.Rd |only fastR-0.10.3/fastR/man/step.Rd |only fastR-0.10.3/fastR/man/stereogram.Rd |only fastR-0.10.3/fastR/man/students.Rd |only fastR-0.10.3/fastR/man/tastetest.Rd |only fastR-0.10.3/fastR/man/tdf.Rd |only fastR-0.10.3/fastR/man/tirewear.Rd |only fastR-0.10.3/fastR/man/traffic.Rd |only fastR-0.10.3/fastR/man/trebuchet.Rd |only fastR-0.10.3/fastR/man/undocumented.Rd |only fastR-0.10.3/fastR/man/utilities.Rd |only fastR-0.10.3/fastR/man/vaov.Rd |only fastR-0.10.3/fastR/man/wilson.ci.Rd |only fastR-0.10.3/fastR/man/workingWomen.Rd |only fastR-0.10.3/fastR/man/xplot.Rd |only fastR-0.10.3/fastR/vignettes |only fastR-1.1/fastR/R/RcppExports.R |only fastR-1.1/fastR/R/allbetas.R |only fastR-1.1/fastR/R/colVars.R |only fastR-1.1/fastR/R/cora.R |only fastR-1.1/fastR/R/correls.R |only fastR-1.1/fastR/R/cova.R |only fastR-1.1/fastR/R/dista.R |only fastR-1.1/fastR/R/mahala.R |only fastR-1.1/fastR/R/standardise.R |only fastR-1.1/fastR/R/ttests.R |only fastR-1.1/fastR/R/univglms.R |only fastR-1.1/fastR/man/allbetas.Rd |only fastR-1.1/fastR/man/colMedians.Rd |only fastR-1.1/fastR/man/colVars.Rd |only fastR-1.1/fastR/man/correls.Rd |only fastR-1.1/fastR/man/cova.Rd |only fastR-1.1/fastR/man/dista.Rd |only fastR-1.1/fastR/man/logistic_only.Rd |only fastR-1.1/fastR/man/mahala.Rd |only fastR-1.1/fastR/man/nth.Rd |only fastR-1.1/fastR/man/poisson_only.Rd |only fastR-1.1/fastR/man/standardise.Rd |only fastR-1.1/fastR/man/ttests.Rd |only fastR-1.1/fastR/man/univglms.Rd |only fastR-1.1/fastR/src |only 133 files changed, 854 insertions(+), 94 deletions(-)
Title: Measure of Agreement Between Two Raters
Description: Measure of agreement Delta was originally by Martín & Femia (2004) <DOI:10.1348/000711004849268>.
Since then has been considered as agreement measure for different
fields, since their behavior is usually better than the usual Kappa index
by Cohen (1960) <DOI:10.1177/001316446002000104>. The main issue with Delta
is that can not be computed by hand contrary to Kappa.
Author: Antonio Rodriguez [aut, cre],
Pedro Femia [aut, cph],
Antonio Martín [aut, cph]
Maintainer: Antonio Rodriguez <tonirodriguezcontesti@gmail.com>
Diff between Delta versions 0.1.1.1 dated 2017-06-21 and 0.1.1.11 dated 2017-07-27
DESCRIPTION | 14 +++++++++----- MD5 | 2 +- 2 files changed, 10 insertions(+), 6 deletions(-)
Title: A Basic Set of Functions for Compositional Data Analysis
Description: A minimum set of functions to perform compositional data analysis
using the log-ratio approach introduced by John Aitchison in 1982. Main functions
have been implemented in c++ for better performance.
Author: Marc Comas-Cufí [aut, cre]
Maintainer: Marc Comas-Cufí <mcomas@imae.udg.edu>
Diff between coda.base versions 0.1.3 dated 2017-07-18 and 0.1.4 dated 2017-07-27
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/coda.cpp | 8 ++++---- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Convolution of Gamma Distributions
Description: Convolution of gamma distributions in R. The convolution of
gamma distributions is the sum of series of gamma
distributions and all gamma distributions here can have different
parameters. This package can calculate density, distribution function
and do simulation work.
Author: Chaoran Hu [aut, cre],
Vladimir Pozdnyakov [ths],
Jun Yan [ths]
Maintainer: Chaoran Hu <chaoran.hu@uconn.edu>
Diff between coga versions 0.2.0 dated 2017-06-28 and 0.2.1 dated 2017-07-27
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 8 ++++++++ configure | 18 +++++++++--------- configure.ac | 2 +- inst/CITATION | 4 ++-- inst/doc/coga-intro.html | 46 +++++++++++++++++++++++----------------------- src/coga2dim.cpp | 4 ++-- 8 files changed, 56 insertions(+), 48 deletions(-)
Title: k-Prototypes Clustering for Mixed Variable-Type Data
Description: Functions to perform k-prototypes partitioning clustering for
mixed variable-type data according to Z.Huang (1998): Extensions to the k-Means
Algorithm for Clustering Large Data Sets with Categorical Variables, Data Mining
and Knowledge Discovery 2, 283-304, <DOI:10.1023/A:1009769707641>.
Author: Gero Szepannek
Maintainer: Gero Szepannek <gero.szepannek@web.de>
Diff between clustMixType versions 0.1-17 dated 2016-11-11 and 0.1-22 dated 2017-07-27
DESCRIPTION | 8 - MD5 | 8 - R/kprototypes.R | 240 +++++++++++++++++++++++++++++++++---------------------- man/kproto.Rd | 6 - man/lambdaest.Rd | 11 +- 5 files changed, 163 insertions(+), 110 deletions(-)
Title: Selecting Variable Subsets
Description: A collection of functions which (i) assess the quality of variable subsets as surrogates for a full data set, in either an exploratory data analysis or in the context of a multivariate linear model, and (ii) search for subsets which are optimal under various criteria.
Author: Jorge Orestes Cerdeira [aut], Pedro Duarte Silva [aut], Jorge Cadima [aut, cre], Manuel Minhoto [aut]
Maintainer: Jorge Cadima <jcadima@isa.utl.pt>
Diff between subselect versions 0.12-6 dated 2016-07-28 and 0.13 dated 2017-07-27
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NAMESPACE | 1 + build/vignette.rds |binary inst/CHANGELOG | 4 ++++ inst/doc/subselect.pdf |binary src/init.c |only 7 files changed, 15 insertions(+), 9 deletions(-)
Title: Individual-Based, Spatially-Explicit Simulation and Analysis of
Multi-State Movements in River Networks and Heterogeneous
Landscapes
Description: Provides functions to generate and analyze individual-based spatially-explicit
simulations of multi-state movements in heterogeneous landscapes, based on "resistance"
rasters. Although originally conceived and designed to simulate spatially-explicit trajectories
of species constrained to linear, dendritic habitats (e.g., river networks), the simulation
algorithm is built to be highly flexible and can be applied to any (aquatic, semi-aquatic or
terrestrial) organism. Thus, the user will be able to use the package to simulate movements
either in homogeneous landscapes, heterogeneous landscapes (e.g. semi-aquatic animal moving
mainly along rivers but also using the matrix), or even in highly contrasted landscapes
(e.g. fish in a river network). The algorithm and its input parameters are the same for all
cases, so that results are comparable. Simulated trajectories can then be used as mechanistic
null models to test e.g. for species site fidelity and other 'Movement Ecology' hypotheses, or
for other predictive purposes. The package should thus be relevant to explore a broad spectrum
of ecological phenomena, such as those at the interface of animal behaviour, landscape, spatial
and movement ecology, disease and invasive species spread, and population dynamics.
Author: Lorenzo Quaglietta [aut],
Miguel Porto [aut, cre],
Erida Gjini [ctb]
Maintainer: Miguel Porto <mpbertolo@gmail.com>
Diff between SiMRiv versions 0.9.1 dated 2016-07-15 and 1.0.0 dated 2017-07-27
SiMRiv-0.9.1/SiMRiv/man/perceptionWindow.Rd |only SiMRiv-1.0.0/SiMRiv/DESCRIPTION | 40 ++--- SiMRiv-1.0.0/SiMRiv/MD5 | 51 ++++-- SiMRiv-1.0.0/SiMRiv/NAMESPACE | 22 ++ SiMRiv-1.0.0/SiMRiv/R/Ops.r |only SiMRiv-1.0.0/SiMRiv/R/SiMRiv.r | 110 +++++++++++-- SiMRiv-1.0.0/SiMRiv/R/estimation.r |only SiMRiv-1.0.0/SiMRiv/R/internal.r | 41 ++--- SiMRiv-1.0.0/SiMRiv/build |only SiMRiv-1.0.0/SiMRiv/inst |only SiMRiv-1.0.0/SiMRiv/man/Arith-methods.Rd |only SiMRiv-1.0.0/SiMRiv/man/SiMRiv-package.Rd | 37 ++++ SiMRiv-1.0.0/SiMRiv/man/adjustModel.Rd |only SiMRiv-1.0.0/SiMRiv/man/binCounts.Rd |only SiMRiv-1.0.0/SiMRiv/man/generationPlot.Rd |only SiMRiv-1.0.0/SiMRiv/man/perceptualRange.Rd |only SiMRiv-1.0.0/SiMRiv/man/resistanceFromShape.Rd |only SiMRiv-1.0.0/SiMRiv/man/sampleMovement.Rd | 19 +- SiMRiv-1.0.0/SiMRiv/man/simulate.Rd | 38 +++- SiMRiv-1.0.0/SiMRiv/man/species.Rd | 15 + SiMRiv-1.0.0/SiMRiv/man/speciesModel.Rd |only SiMRiv-1.0.0/SiMRiv/man/state.Rd | 19 +- SiMRiv-1.0.0/SiMRiv/src/SiMRiv.h | 20 +- SiMRiv-1.0.0/SiMRiv/src/init.c |only SiMRiv-1.0.0/SiMRiv/src/raster-fn.c | 13 + SiMRiv-1.0.0/SiMRiv/src/simulate.c | 197 ++++++++++++------------- SiMRiv-1.0.0/SiMRiv/vignettes |only 27 files changed, 387 insertions(+), 235 deletions(-)
Title: Hydrologic Modelling System for R Users
Description: Hydrologic modelling system is an object oriented tool which enables R users to simulate and analyze hydrologic events. The package proposes functions and methods for construction, simulation, visualization, and calibration of hydrologic systems.
Author: Rezgar Arabzadeh ; Shahab Araghinejad
Maintainer: Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>
Diff between RHMS versions 1.2 dated 2017-07-14 and 1.3 dated 2017-07-27
DESCRIPTION | 8 - MD5 | 44 ++++++--- NAMESPACE | 10 +- R/loss.R | 38 -------- R/loss.base.R |only R/loss.default.R |only R/plot.sim.R | 4 R/reachRouting.R | 77 ---------------- R/reachRouting.base.R |only R/reachRouting.default.R |only R/reservoirRouting.R | 45 --------- R/reservoirRouting.base.R |only R/reservoirRouting.default.R |only R/sim.base.R | 8 - R/sim.default.R | 4 R/transform.R | 188 ---------------------------------------- R/transform.base.R |only R/transform.default.R |only man/RHMS-package.Rd | 37 ++++--- man/loss.Rd | 6 - man/loss.base.Rd |only man/loss.default.Rd |only man/reachRouting.Rd | 16 +-- man/reachRouting.base.Rd |only man/reachRouting.default.Rd |only man/reservoirRouting.Rd | 11 +- man/reservoirRouting.base.Rd |only man/reservoirRouting.default.Rd |only man/transform.Rd | 8 - man/transform.base.Rd |only man/transform.default.Rd |only 31 files changed, 91 insertions(+), 413 deletions(-)
Title: Predicting the Number of Species in a Random Sample
Description: The relation between the number of species and the number of individuals in a random sample is a classic problem back to Fisher (1943) <doi:10.2307/1411>. We generalize this problem to estimate the number of species represented at least r times in a random sample. In particular when r=1, it becomes the classic problem. We use a mixture of Poisson processes to model sampling procedures and apply a nonparametric empirical Bayes approach to obtain an estimator. For more information on preseqR, see Deng C, Daley T and Smith AD (2015) <doi:10.1007/s40484-015-0049-7> and Deng C and Smith AD (2016) <arXiv:1607.02804v2>.
Author: Chao Deng, Timothy Daley and Andrew D. Smith
Maintainer: Chao Deng <chaodeng@usc.edu>
Diff between preseqR versions 3.1.0 dated 2017-05-21 and 3.1.1 dated 2017-07-27
DESCRIPTION | 8 +++--- MD5 | 13 +++++++---- NAMESPACE | 4 ++- R/fisher.R |only R/mincount.R | 54 ++++++++++++++++++++++++++++++---------------- README.md | 19 ++++++++++++++++ data/WillButterfly.txt.gz |only man/WillButterfly.Rd |only man/fisher.alpha.Rd |only man/fisher.mincount.Rd |only 10 files changed, 71 insertions(+), 27 deletions(-)