Sat, 29 Jul 2017

Package hsdar (with last version 0.5.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-12-09 0.5.1
2016-09-09 0.5.0
2016-02-23 0.4.1
2016-01-12 0.4.0
2015-10-06 0.3.1
2015-07-28 0.3.0
2015-06-19 0.2.1
2015-06-18 0.2
2015-05-22 0.1.5
2015-05-21 0.1.4
2015-05-01 0.1.3
2015-04-08 0.1.2
2015-03-25 0.1.1

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Package seeg (with last version 1.0) was removed from CRAN

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2013-01-04 1.0

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Package stratigraph (with last version 0.66) was removed from CRAN

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2015-01-13 0.66
2011-08-03 0.64
2010-07-24 0.62
2010-06-08 0.61
2010-06-03 0.6

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Package phylodyn (with last version 0.9.0) was removed from CRAN

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2017-05-03 0.9.0

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Package scphaser (with last version 1.0.0) was removed from CRAN

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2016-08-31 1.0.0

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Package sp500SlidingWindow (with last version 0.1.0) was removed from CRAN

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2016-05-10 0.1.0

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Package MODISTools (with last version 0.95.1) was removed from CRAN

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2017-02-16 0.95.1
2016-08-02 0.95.0
2015-01-21 0.94.6
2014-12-23 0.94.5
2014-09-08 0.94.4
2014-03-26 0.93.9
2014-01-23 0.93.7
2013-08-13 0.93.5
2013-07-26 0.93.3

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Package RcmdrPlugin.seeg (with last version 1.0) was removed from CRAN

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2013-01-08 1.0

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Package gamlss.spatial (with last version 1.3.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-05-30 1.3.2
2016-06-19 1.3.1
2015-07-09 1.3
2015-02-05 0.2
2014-02-21 0.1

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Package memisc updated to version 0.99.13.2 with previous version 0.99.13 dated 2017-07-17

Title: Tools for Management of Survey Data and the Presentation of Analysis Results
Description: One of the aims of this package is to make life easier for R users who deal with survey data sets. It provides an infrastructure for the management of survey data including value labels, definable missing values, recoding of variables, production of code books, and import of (subsets of) 'SPSS' and 'Stata' files. Further, it provides functionality to produce tables and data frames of arbitrary descriptive statistics and (almost) publication-ready tables of regression model estimates, which can be exported to 'LaTeX' and HTML.
Author: Martin Elff (with contributions from Christopher N. Lawrence, Dave Atkins, Jason W. Morgan, Achim Zeileis)
Maintainer: Martin Elff <memisc@elff.eu>

Diff between memisc versions 0.99.13 dated 2017-07-17 and 0.99.13.2 dated 2017-07-29

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Package MasterBayes updated to version 2.55 with previous version 2.54 dated 2016-10-26

Title: ML and MCMC Methods for Pedigree Reconstruction and Analysis
Description: The primary aim of MasterBayes is to use MCMC techniques to integrate over uncertainty in pedigree configurations estimated from molecular markers and phenotypic data. Emphasis is put on the marginal distribution of parameters that relate the phenotypic data to the pedigree. All simulation is done in compiled C++ for efficiency.
Author: Jarrod Hadfield
Maintainer: Jarrod Hadfield <j.hadfield@ed.ac.uk>

Diff between MasterBayes versions 2.54 dated 2016-10-26 and 2.55 dated 2017-07-29

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Package mapview updated to version 2.1.4 with previous version 2.1.0 dated 2017-06-28

Title: Interactive Viewing of Spatial Objects in R
Description: Methods to view spatial objects interactively.
Author: Tim Appelhans [cre, aut], Florian Detsch [aut], Christoph Reudenbach [aut], Stefan Woellauer [aut], Spaska Forteva [ctb], Thomas Nauss [ctb], Edzer Pebesma [ctb], Kenton Russell [ctb], Michael Sumner [ctb], Environmental Informatics Marburg [ctb]
Maintainer: Tim Appelhans <tim.appelhans@gmail.com>

Diff between mapview versions 2.1.0 dated 2017-06-28 and 2.1.4 dated 2017-07-29

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New package MALDIrppa with initial version 1.0.0
Package: MALDIrppa
Type: Package
Title: MALDI Mass Spectrometry Data Robust Pre-Processing and Analysis
Version: 1.0.0
Date: 2017-07-24
Author: Javier Palarea-Albaladejo
Maintainer: Javier Palarea-Albaladejo <javier.palarea@bioss.ac.uk>
Depends: R (>= 3.2.5), MALDIquant, signal, robustbase, wmtsa, lattice
ByteCompile: yes
Description: Provides methods for quality control and robust pre-processing and analysis of MALDI mass spectrometry data.
License: GPL (>= 2)
Repository: CRAN
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-07-29 15:51:26 UTC; Japal
Date/Publication: 2017-07-29 17:44:54 UTC

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New package boxcoxmix with initial version 0.13
Package: boxcoxmix
Type: Package
Title: Response Transformations for Random Effect and Variance Component Models
Version: 0.13
Date: 2017-7-29
Author: Amani Almohaimeed and Jochen Einbeck
Maintainer: Amani Almohaimeed <amani.almohaimeed@gmail.com>
Depends: R (>= 3.3.2)
Imports: statmod(>= 1.4.20), qicharts(>= 0.5.4)
Suggests: npmlreg, nlme
LazyLoad: yes
Description: Response transformations for overdispersed generalized linear models and variance component models using nonparametric profile maximum likelihood estimation. The main function is optim.boxcox().
License: GPL (>= 3)
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-07-29 16:10:40 UTC; amanialmohaimeed
Repository: CRAN
Date/Publication: 2017-07-29 17:44:02 UTC

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Package sdcTable updated to version 0.22.8 with previous version 0.22.7 dated 2017-07-21

Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in tabular data such as primary and secondary cell suppression as described for example in Hundepol et al. (2012) <doi:10.1002/9781118348239> are covered in this package.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl <bernhard.meindl@gmail.com>

Diff between sdcTable versions 0.22.7 dated 2017-07-21 and 0.22.8 dated 2017-07-29

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Package rAverage updated to version 0.5-8 with previous version 0.5-3 dated 2017-04-19

Title: Parameter Estimation for the Averaging Model of Information Integration Theory
Description: Implementation of the R-Average method for parameter estimation of averaging models of the Anderson's Information Integration Theory by Vidotto, G., Massidda, D., & Noventa, S. (2010) <https://www.uv.es/psicologica/articulos3FM.10/3Vidotto.pdf>.
Author: Giulio Vidotto <giulio.vidotto@unipd.it>, Stefano Noventa <stefano.noventa@uni-tuebingen.de>, Davide Massidda <davide.massidda@gmail.com>, Marco Vicentini <marco.vicentini@gmail.com>
Maintainer: Davide Massidda <davide.massidda@gmail.com>

Diff between rAverage versions 0.5-3 dated 2017-04-19 and 0.5-8 dated 2017-07-29

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New package numform with initial version 0.0.4
Package: numform
Title: Tools to Format Numbers for Publication
Version: 0.0.4
Authors@R: c(person("Tyler", "Rinker", email = "tyler.rinker@gmail.com", role = c("aut", "cre")))
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Description: Format numbers for publication; includes the removal of leading zeros, standardization of number of digits, addition of affixes, and a p-value formatter. These tools combine the functionality of several 'base' functions such as paste(), format(), and sprintf() into specific use case functions that are named in a way that is consistent with usage, making their names easy to remember and easy to deploy.
Depends: R (>= 3.2.0)
Suggests: testthat
Date: 2017-07-29
License: GPL-2
LazyData: TRUE
RoxygenNote: 6.0.1
Collate: 'as_factor.R' 'utils.R' 'f_affix.R' 'f_comma.R' 'f_denom.R' 'f_dollar.R' 'f_month.R' 'f_num.R' 'f_ordinal.R' 'f_pad_zero.R' 'f_parenthesis.R' 'f_percent.R' 'f_pval.R' 'f_sign.R' 'f_weekday.R' 'fv_num_percent.R' 'fv_percent.R' 'fv_percent_diff.R' 'fv_runs.R' 'numform-package.R'
NeedsCompilation: no
Packaged: 2017-07-29 12:16:36 UTC; Tyler
Author: Tyler Rinker [aut, cre]
Repository: CRAN
Date/Publication: 2017-07-29 13:39:43 UTC

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Package mkin updated to version 0.9.46 with previous version 0.9.45.2 dated 2017-07-22

Title: Kinetic Evaluation of Chemical Degradation Data
Description: Calculation routines based on the FOCUS Kinetics Report (2006, 2014). Includes a function for conveniently defining differential equation models, model solution based on eigenvalues if possible or using numerical solvers and a choice of the optimisation methods made available by the 'FME' package. If a C compiler (on windows: 'Rtools') is installed, differential equation models are solved using compiled C functions. Please note that no warranty is implied for correctness of results or fitness for a particular purpose.
Author: Johannes Ranke [aut, cre, cph], Katrin Lindenberger [ctb], René Lehmann [ctb], Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke <jranke@uni-bremen.de>

Diff between mkin versions 0.9.45.2 dated 2017-07-22 and 0.9.46 dated 2017-07-29

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Package RkMetrics updated to version 1.3 with previous version 1.1 dated 2017-07-28

Title: Hybrid Mortality Estimation
Description: Hybrid Mortality Modelling (HMM) provides a framework in which mortality around "the accident hump" and at very old ages can be modelled under a single model. The graphics' codes necessary for visualization of the models' output are included here. Specifically, the graphics are based on the assumption that, the mortality rates can be expressed as a function of the area under the curve between the crude mortality rates plots and the tangential transform of the force of mortality.
Author: Titus K Rotich <rktitus@uoeld.ac.ke>
Maintainer: Titus K Rotich <rktitus@uoeld.ac.ke>

Diff between RkMetrics versions 1.1 dated 2017-07-28 and 1.3 dated 2017-07-29

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Package JohnsonDistribution (with last version 0.24) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-04-17 0.24

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Package netClass (with last version 1.2.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-12-03 1.2.1
2013-09-18 1.2
2013-06-04 1.1
2013-05-30 1.0

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Package ambhasGW (with last version 0.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-07-15 0.0.1

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New package rclipboard with initial version 0.1
Package: rclipboard
Title: Shiny/R Wrapper for 'clipboard.js'
Version: 0.1
Author: Sebastien Bihorel
Maintainer: Sebastien Bihorel <sb.pmlab@gmail.com>
Description: Leverages the functionality of 'clipboard.js', a JavaScript library for HMTL5-based copy to clipboard from web pages (see <https://clipboardjs.com> for more information), and provides a reactive copy-to-clipboard UI button component, called 'rclipButton', for 'shiny' R applications.
Depends: R (>= 3.3.0)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
URL: http://github.com/sbihorel/rclipboard
BugReports: http://github.com/sbihorel/rclipboard/issues
Imports: shiny
NeedsCompilation: no
Packaged: 2017-07-29 08:31:24 UTC; sebastien
Repository: CRAN
Date/Publication: 2017-07-29 08:44:21 UTC

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Package sparklyr updated to version 0.6.0 with previous version 0.5.6 dated 2017-06-10

Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data processing, see <http://spark.apache.org>. This package supports connecting to local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end, and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut, cre], Kevin Ushey [aut], JJ Allaire [aut], RStudio [cph], The Apache Software Foundation [aut, cph]
Maintainer: Javier Luraschi <javier@rstudio.com>

Diff between sparklyr versions 0.5.6 dated 2017-06-10 and 0.6.0 dated 2017-07-29

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 sparklyr-0.6.0/sparklyr/R/ml_pca.R                                             |    3 
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Package soilwater updated to version 1.0.5 with previous version 1.0.2 dated 2015-07-25

Title: Implementation of Parametric Formulas for Soil Water Retention or Conductivity Curve
Description: It implements parametric formulas of soil water retention or conductivity curve. At the moment, only Van Genuchten (for soil water retention curve) and Mualem (for hydraulic conductivity) were implemented. See reference (<http://en.wikipedia.org/wiki/Water_retention_curve>).
Author: Emanuele Cordano, Daniele Andreis, Fabio Zottele
Maintainer: Emanuele Cordano <emanuele.cordano@gmail.com>

Diff between soilwater versions 1.0.2 dated 2015-07-25 and 1.0.5 dated 2017-07-29

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More information about soilwater at CRAN
Permanent link

Package plotly updated to version 4.7.1 with previous version 4.7.0 dated 2017-05-28

Title: Create Interactive Web Graphics via 'plotly.js'
Description: Easily translate 'ggplot2' graphs to an interactive web-based version and/or create custom web-based visualizations directly from R. Once uploaded to a 'plotly' account, 'plotly' graphs (and the data behind them) can be viewed and modified in a web browser.
Author: Carson Sievert [aut, cre], Chris Parmer [aut], Toby Hocking [aut], Scott Chamberlain [aut], Karthik Ram [aut], Marianne Corvellec [aut], Pedro Despouy [aut], Plotly Technologies Inc. [cph]
Maintainer: Carson Sievert <cpsievert1@gmail.com>

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 plotly-4.7.1/plotly/man/toRGB.Rd                                       |    2 
 plotly-4.7.1/plotly/man/wind.Rd                                        |    2 
 plotly-4.7.1/plotly/tests/testthat.R                                   |   10 
 plotly-4.7.1/plotly/tests/testthat/test-api.R                          |   18 
 plotly-4.7.1/plotly/tests/testthat/test-ggplot-dynamicTicks.R          |   12 
 plotly-4.7.1/plotly/tests/testthat/test-plotly-filename.R              |    2 
 plotly-4.7.1/plotly/tests/testthat/test-plotly-getfigure.R             |   12 
 126 files changed, 679 insertions(+), 641 deletions(-)

More information about plotly at CRAN
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Package OpenMx updated to version 2.7.13 with previous version 2.7.12 dated 2017-06-16

Title: Extended Structural Equation Modelling
Description: Facilitates treatment of statistical model specifications as things that can be generated and manipulated programmatically. Structural equation models may be specified with reticular action model matrices or paths, linear structural relations matrices or paths, or directly in matrix algebra. Fit functions include full information maximum likelihood, maximum likelihood, and weighted least squares. Example models include confirmatory factor, multiple group, mixture distribution, categorical threshold, modern test theory, differential equations, state space, and many others.
Author: Steven M. Boker [aut], Michael C. Neale [aut], Hermine H. Maes [aut], Michael J. Wilde [ctb], Michael Spiegel [aut], Timothy R. Brick [aut], Ryne Estabrook [aut], Timothy C. Bates [aut], Paras Mehta [ctb], Timo von Oertzen [ctb], Ross J. Gore [aut], Michael D. Hunter [aut], Daniel C. Hackett [ctb], Julian Karch [ctb], Andreas M. Brandmaier [ctb], Joshua N. Pritikin [aut, cre], Mahsa Zahery [aut], Robert M. Kirkpatrick [aut], Yang Wang [ctb], Charles Driver [ctb], Massachusetts Institute of Technology [cph], S. G. Johnson [cph], Association for Computing Machinery [cph], Dieter Kraft [cph], Stefan Wilhelm [cph], Manjunath B G [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>

Diff between OpenMx versions 2.7.12 dated 2017-06-16 and 2.7.13 dated 2017-07-29

 DESCRIPTION                                             |    8 
 MD5                                                     |  107 +-
 NAMESPACE                                               |    6 
 NEWS                                                    |    3 
 R/0ClassUnion.R                                         |   69 +
 R/MxCompare.R                                           |  590 ++++++++++++++--
 R/MxCompute.R                                           |   30 
 R/MxDataWLS.R                                           |   21 
 R/MxExpectationNormal.R                                 |   20 
 R/MxInterval.R                                          |   29 
 R/MxOptions.R                                           |   49 -
 R/MxRobustSE.R                                          |  134 +++
 R/MxRun.R                                               |   21 
 R/MxSummary.R                                           |   34 
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 R/MxTryHard.R                                           |   46 -
 R/MxVersion.R                                           |    4 
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 man/mxDataWLS.Rd                                        |    9 
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 src/ComputeGD.cpp                                       |   21 
 src/Makevars.in                                         |    2 
 src/ba81quad.cpp                                        |    2 
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 src/finiteDifferences.h                                 |    2 
 src/glue.cpp                                            |    6 
 src/omxDefines.h                                        |    8 
 src/omxFIMLFitFunction.cpp                              |    2 
 src/omxFitFunctionBA81.cpp                              |    8 
 src/omxGREMLfitfunction.cpp                             |    6 
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 src/ssMLFit.cpp                                         |   46 -
 58 files changed, 1222 insertions(+), 371 deletions(-)

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Package grec updated to version 1.1.0 with previous version 1.0.0 dated 2017-07-09

Title: Classification of Spatial Patterns from Environmental Data Through GRadient RECognition
Description: Provides algorithms for detection of spatial patterns from oceanographic data using image processing methods based on Gradient Recognition.
Author: Wencheng Lau-Medrano [aut, cre]
Maintainer: Wencheng Lau-Medrano <luis.laum@gmail.com>

Diff between grec versions 1.0.0 dated 2017-07-09 and 1.1.0 dated 2017-07-29

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New package fChange with initial version 0.1.0
Package: fChange
Type: Package
Title: Change Point Analysis in Functional Data
Version: 0.1.0
Author: Ozan Sonmez, Alexander Aue, Gregory Rice
Maintainer: Ozan Sonmez <osonmez@ucdavis.edu>
Description: Change point estimation and detection methods for functional data are implemented using dimension reduction via functional principal component analysis and a fully-functional (norm-based) method. Detecting and dating structural breaks for both dependent and independent functional samples is illustrated along with some basic functional data generating processes.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: TRUE
Depends: R (>= 2.10)
Imports: fda, sde, stats, sandwich, reshape2, lattice
Suggests: knitr
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-07-28 23:38:57 UTC; osonm
Repository: CRAN
Date/Publication: 2017-07-29 05:12:04 UTC

More information about fChange at CRAN
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New package easyAHP with initial version 0.1.0
Package: easyAHP
Type: Package
Title: Analytic Hierarchy Process (AHP)
Version: 0.1.0
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>
Description: Given the scores from decision makers, the analytic hierarchy process can be conducted easily.
License: GPL-3
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2017-07-29 04:11:59 UTC; dgdzc
Repository: CRAN
Date/Publication: 2017-07-29 05:08:19 UTC

More information about easyAHP at CRAN
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