Title: Tools to Analyze Soil Carbon Database Created by Powell Center
Working Group
Description: A tool for importing, visualizing, and analyzing the soil carbon database created by the Powell Center working group.
Author: J Grey Monroe [aut, cre]
Maintainer: J Grey Monroe <greymonroe@gmail.com>
Diff between soilcarbon versions 1.0.0 dated 2017-05-03 and 1.2.0 dated 2017-08-03
DESCRIPTION | 6 +-- MD5 | 39 +++++++++++----------- NEWS.md | 6 +++ R/Yujie_database.R | 27 ++++++++++++++- R/checkcolnames.R | 4 +- R/checknames.R | 10 +++++ R/checkreqcols.R | 7 ++- R/checkvalues.R | 4 +- R/dataQC.R | 51 +++++++++------------------- R/read.soilcarbon.R | 9 +++-- R/soilcarbon_database.R | 27 ++++++++++++++- README.md | 67 ++++++++++++++++++++++++++++++++++++++ build/vignette.rds |binary data/Yujie_database.rda |binary data/soilcarbon_database.rda |binary inst/doc/launch_shiny.html | 4 +- inst/extdata/Master_template.xlsx |binary inst/extdata/Template_info.xlsx |only inst/shiny/server.R | 2 - man/Yujie_database.Rd | 27 ++++++++++++++- man/soilcarbon_database.Rd | 27 ++++++++++++++- 21 files changed, 241 insertions(+), 76 deletions(-)
Title: Tidy Quantitative Financial Analysis
Description: Bringing financial analysis to the 'tidyverse'. The 'tidyquant'
package provides a convenient wrapper to various 'xts', 'zoo', 'quantmod', 'TTR'
and 'PerformanceAnalytics' package
functions and returns the objects in the tidy 'tibble' format. The main
advantage is being able to use quantitative functions with the 'tidyverse'
functions including 'purrr', 'dplyr', 'tidyr', 'ggplot2', 'lubridate', etc. See
the 'tidyquant' website for more information, documentation and examples.
Author: Matt Dancho [aut, cre],
Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between tidyquant versions 0.5.2 dated 2017-07-27 and 0.5.3 dated 2017-08-03
DESCRIPTION | 12 - MD5 | 34 ++-- NEWS.md | 5 R/tq_get.R | 47 +++--- R/tq_performance.R | 13 - R/tq_portfolio.R | 2 R/tq_transmute.R | 30 ++-- build/vignette.rds |binary inst/doc/TQ00-introduction-to-tidyquant.html | 4 inst/doc/TQ01-core-functions-in-tidyquant.html | 124 ++++++++--------- inst/doc/TQ02-quant-integrations-in-tidyquant.html | 30 ++-- inst/doc/TQ03-scaling-and-modeling-with-tidyquant.html | 121 ++++++++-------- inst/doc/TQ04-charting-with-tidyquant.html | 4 inst/doc/TQ05-performance-analysis-with-tidyquant.html | 4 man/geom_bbands.Rd | 3 man/geom_ma.Rd | 3 tests/testthat/test_tq_get_compound_getters.R | 22 +-- tests/testthat/test_tq_transmute.R | 3 18 files changed, 242 insertions(+), 219 deletions(-)
Title: Spatial Data Download and Utility Functions
Description: A suite of conversion scripts to create internally standardized
spatial polygons data frames. Utility scripts use these data sets to return
values such as country, state, timezone, watershed, etc. associated with a
set of longitude/latitude pairs. (They also make cool maps.)
Author: Jonathan Callahan [aut, cre],
Ruby Fore [aut],
Will Leahy [aut],
Henry Nguyen [aut],
Robin Winstanley [aut],
Alice Yang [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaSpatialUtils versions 0.4.9 dated 2017-03-17 and 0.5.1 dated 2017-08-03
MazamaSpatialUtils-0.4.9/MazamaSpatialUtils/man/codeToCode.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/DESCRIPTION | 16 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/MD5 | 174 +++++----- MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/NAMESPACE | 13 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/MazamaSpatialUtils.R | 49 ++ MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertEEZCountries.R |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertGADM.R | 84 ++-- MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertHMSSmoke.R | 58 +-- MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertISOCodeTable.R |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertIndianLands.R |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertLayer.R | 26 - MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertNaturalEarthAdm1.R | 46 +- MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertOSMTimezones.R |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertSimpleCountries.R |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertSimpleCountriesEEZ.R |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertSimpleTimezones.R |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertTMWorldBorders.R | 38 +- MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertTMWorldBordersSimple.R | 41 +- MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertTerrestrialEcoregions.R |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertUSCensusCongress.R |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertUSCensusCounties.R | 20 - MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertUSCensusStates.R |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertWBDHUC.R | 148 +++++--- MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertWorldEEZ.R | 2 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/convertWorldTimezones.R | 37 +- MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/getCountry.R | 3 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/getCountryCode.R | 7 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/getCountryName.R | 6 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/getHUC.R | 4 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/getHUCName.R | 4 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/getPolygonID.R |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/getSpatialData.R | 54 +-- MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/getState.R | 6 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/getStateCode.R | 6 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/getStateName.R | 6 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/getTimezone.R | 3 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/getUSCounty.R | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/getVariable.R | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/installSpatialData.R | 10 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/organizePolygons.R | 54 +-- MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/R/summarizeByPolygon.R |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/README.md | 63 ++- MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/build/vignette.rds |binary MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/data/SimpleCountries.RData |binary MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/data/SimpleCountriesEEZ.RData |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/data/SimpleTimezones.RData |binary MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/data/datalist |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/demo/findStates.R | 19 - MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/demo/findTimezones.R | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/inst/doc/introduction.html | 35 -- MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/MazamaSpatialUtils.Rd | 3 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/SimpleCountries.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/SimpleCountriesEEZ.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/SimpleTimezones.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/SpatialDataDir.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/codeToCountry.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/codeToState.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertEEZCountries.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertGADM.Rd | 7 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertHMSSmoke.Rd | 7 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertISOCodeTable.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertIndianLands.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertLayer.Rd | 5 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertNaturalEarthAdm1.Rd | 3 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertOSMTimezones.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertSimpleCountries.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertSimpleCountriesEEZ.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertSimpleTimezones.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertTMWorldBorders.Rd | 3 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertTMWorldBordersSimple.Rd | 3 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertTerrestrialEcoregions.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertUSCensusCongress.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertUSCensusCounties.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertUSCensusStates.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertWBDHUC.Rd | 10 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertWikipediaTimezoneTable.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertWorldEEZ.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/convertWorldTimezones.Rd | 14 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/countryToCode.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/getCountry.Rd | 3 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/getCountryCode.Rd | 7 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/getCountryName.Rd | 7 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/getHUC.Rd | 3 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/getHUCName.Rd | 3 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/getPolygonID.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/getSpatialData.Rd | 15 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/getSpatialDataDir.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/getState.Rd | 5 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/getStateCode.Rd | 5 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/getStateName.Rd | 5 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/getTimezone.Rd | 3 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/getUSCounty.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/getVariable.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/installSpatialData.Rd | 14 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/iso2ToIso3.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/iso3ToIso2.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/loadSpatialData.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/organizePolygons.Rd | 5 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/setSpatialDataDir.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/stateToCode.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/subsetHUC.Rd | 1 MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/man/summarizeByPolygon.Rd |only MazamaSpatialUtils-0.5.1/MazamaSpatialUtils/tests/testthat/test1.R | 54 ++- 103 files changed, 675 insertions(+), 560 deletions(-)
More information about MazamaSpatialUtils at CRAN
Permanent link
Title: Joint Modeling of the Gene-Expression and Bioassay Data, Taking
Care of the Effect Due to a Fingerprint Feature
Description: Offers modeling the association between gene-expression and bioassay data, taking care of the effect due to a fingerprint feature and helps with several plots to better understand the analysis.
Author: Rudradev Sengupta, Nolen Joy Perualila
Maintainer: Rudradev Sengupta <rudradev.sengupta@uhasselt.be>
Diff between IntegratedJM versions 1.5 dated 2017-03-29 and 1.6 dated 2017-08-03
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NEWS | 4 +++- R/Functions.R | 2 ++ 4 files changed, 14 insertions(+), 10 deletions(-)
Title: Convert Spatial Grids to Polygons
Description: The functionality of this package has been deprecated;
please use the Grid2Polygons function in the inlmisc package instead.
Converts a spatial object from class sp::SpatialGridDataFrame to
sp::SpatialPolygonsDataFrame.
Author: Jason C. Fisher [aut, cre]
Maintainer: Jason C. Fisher <jfisher@usgs.gov>
Diff between Grid2Polygons versions 0.1.6 dated 2017-02-08 and 0.2.1 dated 2017-08-03
Grid2Polygons-0.1.6/Grid2Polygons/src |only Grid2Polygons-0.2.1/Grid2Polygons/DESCRIPTION | 18 - Grid2Polygons-0.2.1/Grid2Polygons/MD5 | 13 - Grid2Polygons-0.2.1/Grid2Polygons/NAMESPACE | 5 Grid2Polygons-0.2.1/Grid2Polygons/NEWS.md | 4 Grid2Polygons-0.2.1/Grid2Polygons/R/Grid2Polygons.R | 199 +---------------- Grid2Polygons-0.2.1/Grid2Polygons/README.md | 27 -- Grid2Polygons-0.2.1/Grid2Polygons/man/Grid2Polygons.Rd | 59 +---- 8 files changed, 50 insertions(+), 275 deletions(-)
Title: Vehicular Emissions Inventories
Description: Elaboration of vehicular emissions inventories,
consists the three stages, pre-processing activity data, processing
or estimating the emissions and post-processing of emissions in
maps and databases.
Author: Sergio Ibarra-Espinosa [aut, cre]
Maintainer: Sergio Ibarra-Espinosa <zergioibarra@gmail.com>
Diff between vein versions 0.2.1-8 dated 2017-06-21 and 0.2.2-3 dated 2017-08-03
DESCRIPTION | 17 ++++---- MD5 | 65 +++++++++++++++--------------- NAMESPACE | 1 NEWS | 25 +++++++++++ NEWS.md |only R/EmissionFactors.R | 1 R/Emissions.R | 6 +- R/EmissionsArray.R | 66 ++++++++++--------------------- R/Evaporative.R | 1 R/Speed.R | 5 +- R/Vehicles.R | 5 +- R/ef_hdv_scaled.R | 2 R/ef_hdv_speed.R | 2 R/ef_ldv_scaled.R | 19 ++++---- R/ef_ldv_speed.R | 23 +++++----- R/emis.R | 68 ++++++++++++++++++++++---------- R/emis_cold.R | 80 +++++++++++++++++++++++++++---------- R/emis_post.R | 106 ++++++++++++++++++++++++++++++++++---------------- R/netspeed.R | 39 ++++++++---------- R/speciate.R | 88 +++++++++++++++++++++++++---------------- R/sysdata.rda |binary inst/CITATION | 24 +++-------- inst/README.Rmd | 31 ++++++++++---- inst/README.html | 39 ++++++++++++------ man/EmissionsArray.Rd | 3 + man/Evaporative.Rd | 1 man/ef_hdv_scaled.Rd | 2 man/ef_hdv_speed.Rd | 3 - man/ef_ldv_scaled.Rd | 21 ++++----- man/ef_ldv_speed.Rd | 23 +++++----- man/emis.Rd | 19 +++++--- man/emis_cold.Rd | 22 +++++++--- man/emis_post.Rd | 16 +++++-- man/netspeed.Rd | 12 ++++- 34 files changed, 512 insertions(+), 323 deletions(-)
Title: Manipulation Testing Based on Density Discontinuity
Description: Density discontinuity test (a.k.a. manipulation test) is commonly employed in regression discontinuity designs and other treatment effect settings to detect whether there is evidence suggesting perfect self-selection (manipulation) around a cutoff where a treatment/policy assignment changes. This package provides tools for conducting the aforementioned statistical test: rddensity() to construct local polynomial based density discontinuity test given a prespecified cutoff, rdbwdensity() to perform bandwidth selection, and rdplotdensity() to construct density plot near the cutoff.
Author: Matias D. Cattaneo, Michael Jansson, Xinwei Ma
Maintainer: Xinwei Ma <xinweima@umich.edu>
Diff between rddensity versions 0.2.1 dated 2017-07-09 and 0.2.2 dated 2017-08-03
DESCRIPTION | 6 ++-- MD5 | 10 +++---- R/rdbwdensity.R | 4 +-- R/rddensity.R | 4 +-- R/rddensity_fun.R | 67 ++++++++++++++++++++++++++++++---------------------- man/rddensity_fV.Rd | 5 +++ 6 files changed, 55 insertions(+), 41 deletions(-)
Title: A GeoJson Processing Toolkit
Description: Includes functions for processing GeoJson objects <https://en.wikipedia.org/wiki/GeoJSON> relying on 'RFC 7946' <https://tools.ietf.org/pdf/rfc7946.pdf>. The geojson encoding is based on 'json11', a tiny JSON library for 'C++11' <https://github.com/dropbox/json11>. Furthermore, the source code is exported in R through the 'Rcpp' and 'RcppArmadillo' packages.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between geojsonR versions 1.0.1 dated 2017-03-30 and 1.0.2 dated 2017-08-03
DESCRIPTION | 10 MD5 | 42 +- NAMESPACE | 1 NEWS.md | 6 R/RcppExports.R | 8 R/utils.R | 110 ++++-- README.md | 4 build/vignette.rds |binary inst/doc/the_geojsonR_package.R | 29 + inst/doc/the_geojsonR_package.Rmd | 46 ++ inst/doc/the_geojsonR_package.html | 33 + man/Dump_From_GeoJson.Rd | 8 man/FROM_GeoJson.Rd | 32 + man/FROM_GeoJson_Schema.Rd |only man/Features_2Collection.Rd | 14 man/TO_GeoJson.Rd | 2 man/shiny_from_JSON.Rd | 1 src/FROM_geojson.cpp | 492 ++++++++++++++++++++++----- src/RcppExports.cpp | 21 - src/init.c | 22 - tests/testthat/file_data/Schema_data.geojson |only tests/testthat/test-geojson.R | 113 +++++- vignettes/the_geojsonR_package.Rmd | 46 ++ 23 files changed, 852 insertions(+), 188 deletions(-)
Title: Data Management Tools for Real-Time Monitoring/Ecological
Momentary Assessment Data
Description: Do data management functions common in real-time monitoring (also called: ecological momentary assessment, experience sampling, micro-longitudinal) data, including creating power curves for multilevel data, centering on participant means and merging event-level data into momentary data sets where you need the events to correspond to the nearest data point in the momentary data. This is VERY early release software, and more features will be added over time.
Author: Evan Kleiman [aut, cre]
Maintainer: Evan Kleiman <ekleiman@fas.harvard.edu>
Diff between EMAtools versions 0.1.2 dated 2017-06-05 and 0.1.3 dated 2017-08-03
DESCRIPTION | 11 +++++------ MD5 | 16 +++++++++++----- NAMESPACE | 2 ++ R/gcenter.R |only R/lme.dscore.R |only R/pmean.R |only R/powercurve.R | 41 ++++++++++++++++++++++++----------------- R/zzz.R | 3 ++- man/ema.powercurve.Rd | 15 ++++++++++++--- man/gcenter.Rd |only man/lme.dscore.Rd |only man/pmean.Rd |only 12 files changed, 56 insertions(+), 32 deletions(-)
Title: Echogram Visualisation and Analysis
Description: Easily import multi-frequency acoustic data stored in 'HAC' files (see <http://biblio.uqar.ca/archives/30005500.pdf> for more information on the format), and produce echogram visualisations with predefined or customized color palettes. It is also possible to merge consecutive echograms; mask or delete unwanted echogram areas; model and subtract background noise; and more important, develop, test and interpret different combinations of frequencies in order to perform acoustic filtering of the echogram's data.
Author: Héctor Villalobos [aut, cre]
Maintainer: Héctor Villalobos <hvillalo@ipn.mx>
Diff between echogram versions 0.1.0 dated 2017-02-07 and 0.1.1 dated 2017-08-03
DESCRIPTION | 8 +- MD5 | 23 +++-- NAMESPACE | 2 NEWS |only NEWS.md |only R/bottom.hac.R | 107 ++++++++++++++------------- R/echogram.R | 191 +++++++++++++++++++++++-------------------------- R/read.echogram.R | 176 +++++++++++++++++++++++---------------------- R/sample.echogram.R | 99 ++++++++++++------------- README.md |only man/bottom.hac.Rd | 6 - man/echogram.Rd | 103 +++++++++++++------------- man/read.echogram.Rd | 96 ++++++++++++------------ man/sample.echogram.Rd | 131 +++++++++++++++++---------------- 14 files changed, 476 insertions(+), 466 deletions(-)
Title: Data-Limited Methods Toolkit
Description: Development, simulation testing, and implementation of management
procedures for data-limited fisheries
(see Carruthers et al (2014) <doi:10.1016/j.fishres.2013.12.014>).
Author: Tom Carruthers [aut, cre],
Adrian Hordyk [aut]
Maintainer: Tom Carruthers <t.carruthers@fisheries.ubc.ca>
Diff between DLMtool versions 4.4 dated 2017-07-20 and 4.4.1 dated 2017-08-03
DESCRIPTION | 8 +-- MD5 | 29 +++++++------ NAMESPACE | 2 NEWS.md | 28 +++++++++---- R/DataObj.r | 32 ++++++++++---- R/MSEObj.r | 9 ++-- R/MiscFuns.r | 25 ++++++----- R/Output.r | 101 ++++++++++++++++++++++++++--------------------- R/SampleFleetPars.r | 16 ++++--- R/SampleSteepness.R |only R/XLloadfuns.r | 23 ++++++---- R/plotFleet.r | 3 + R/popdyn.R | 6 +- R/runMSE.r | 34 +++++++++++++-- man/boxplot.Data.Rd | 6 ++ man/derive_beta_par.Rd |only man/sample_steepness2.Rd |only 17 files changed, 204 insertions(+), 118 deletions(-)
Title: AMCE Estimator for Conjoint Experiments
Description: An R implementation of the Average Marginal Component-specific
Effects (AMCE) estimator presented in Hainmueller, J., Hopkins, D., and Yamamoto
T. (2014) <DOI:10.1093/pan/mpt024> Causal Inference in Conjoint Analysis: Understanding Multi-Dimensional
Choices via Stated Preference Experiments. Political Analysis 22(1):1-30.
Author: Soubhik Barari, Elissa Berwick, Jens Hainmueller, Daniel Hopkins, Sean Liu, Anton Strezhnev, Teppei Yamamoto
Maintainer: Anton Strezhnev <astrezhnev@fas.harvard.edu>
Diff between cjoint versions 2.0.4 dated 2016-03-08 and 2.0.5 dated 2017-08-03
cjoint-2.0.4/cjoint/tests/testthat/testamce.R |only cjoint-2.0.5/cjoint/DESCRIPTION | 18 cjoint-2.0.5/cjoint/MD5 | 21 cjoint-2.0.5/cjoint/NAMESPACE | 44 cjoint-2.0.5/cjoint/R/amce-documentation.R |only cjoint-2.0.5/cjoint/R/cjoint.R | 1557 +++++----- cjoint-2.0.5/cjoint/R/onAttach.R | 12 cjoint-2.0.5/cjoint/man/amce.Rd | 2 cjoint-2.0.5/cjoint/man/plot.amce.Rd | 7 cjoint-2.0.5/cjoint/man/read.qualtrics.Rd | 35 cjoint-2.0.5/cjoint/man/summary.amce.Rd | 2 cjoint-2.0.5/cjoint/tests/testthat/CandidateConjointQualtrics.csv |only cjoint-2.0.5/cjoint/tests/testthat/test-main.r |only cjoint-2.0.5/cjoint/tests/testthat/test-plot.R |only 14 files changed, 886 insertions(+), 812 deletions(-)
Title: Iterated Racing for Automatic Algorithm Configuration
Description: Iterated race is an extension of the Iterated F-race method for
the automatic configuration of optimization algorithms, that is,
(offline) tuning their parameters by finding the most appropriate
settings given a set of instances of an optimization problem.
Author: Manuel López-Ibáñez, Jérémie Dubois-Lacoste, Leslie Pérez Cáceres,
Thomas Stützle, Mauro Birattari, Eric Yuan and Prasanna Balaprakash
Maintainer: Manuel López-Ibáñez <manuel.lopez-ibanez@manchester.ac.uk>
Diff between irace versions 2.3 dated 2017-04-26 and 2.4 dated 2017-08-03
DESCRIPTION | 10 MD5 | 74 ++-- NEWS | 34 +- R/cluster.R | 7 R/generation.R | 14 R/irace.R | 71 ++-- R/main.R | 25 - R/parameterAnalysis.R | 199 +++++------- R/race-wrapper.R | 4 R/race.R | 326 ++++++++++---------- R/readConfiguration.R | 130 +++---- R/readParameters.R | 9 R/testing.R | 2 R/utils.R | 190 +++++++---- R/version.R | 2 README.md | 53 +-- build/partial.rdb |binary inst/CITATION | 41 +- inst/doc/irace-package.R | 69 +++- inst/doc/irace-package.Rnw | 193 +++++++++-- inst/doc/irace-package.pdf |binary inst/examples/target-runner-python/target-runner.py | 20 - inst/templates/scenario.txt.tmpl | 4 inst/templates/target-runner-windows.tmpl | 16 man/defaultScenario.Rd | 2 man/getConfigurationById.Rd | 14 man/getConfigurationByIteration.Rd | 16 man/getFinalElites.Rd | 12 man/irace-package.Rd | 6 man/readConfigurationsFile.Rd | 5 man/target.evaluator.default.Rd | 1 man/target.runner.default.Rd | 1 tests/configurations.txt |only tests/forbidden.txt |only tests/parameters.txt |only tests/testtargeval.R | 1 tests/testthat.R | 212 ++++++++++++- tests/train-instances.txt |only vignettes/NEWS.txt | 34 +- vignettes/irace-package.Rnw | 193 +++++++++-- 40 files changed, 1291 insertions(+), 699 deletions(-)
Title: Various Functions for Handling and Manipulating Remote Sensing
Data
Description: This smorgasbord provides a variety of functions which are useful
for handling, manipulating and visualizing remote sensing data.
Author: Thomas Nauss, Hanna Meyer, Tim Appelhans, Florian Detsch
Maintainer: Florian Detsch <fdetsch@web.de>
Diff between satellite versions 0.2.0 dated 2015-09-10 and 1.0.0 dated 2017-08-03
satellite-0.2.0/satellite/R/calcHistMatch.R |only satellite-0.2.0/satellite/R/deprecated.R |only satellite-0.2.0/satellite/R/deprecated_convDN2RU.R |only satellite-0.2.0/satellite/R/panSharp.R |only satellite-0.2.0/satellite/R/pck_data.R |only satellite-0.2.0/satellite/R/pck_lut.R |only satellite-0.2.0/satellite/R/projectSatellite.R |only satellite-0.2.0/satellite/inst/extdata/DEM.tif |only satellite-0.2.0/satellite/inst/extdata/LC81950252013188LGN00_B1.tif |only satellite-0.2.0/satellite/inst/extdata/LC81950252013188LGN00_B10.tif |only satellite-0.2.0/satellite/inst/extdata/LC81950252013188LGN00_B11.tif |only satellite-0.2.0/satellite/inst/extdata/LC81950252013188LGN00_B2.tif |only satellite-0.2.0/satellite/inst/extdata/LC81950252013188LGN00_B3.tif |only satellite-0.2.0/satellite/inst/extdata/LC81950252013188LGN00_B4.tif |only satellite-0.2.0/satellite/inst/extdata/LC81950252013188LGN00_B5.tif |only satellite-0.2.0/satellite/inst/extdata/LC81950252013188LGN00_B6.tif |only satellite-0.2.0/satellite/inst/extdata/LC81950252013188LGN00_B7.tif |only satellite-0.2.0/satellite/inst/extdata/LC81950252013188LGN00_B8.tif |only satellite-0.2.0/satellite/inst/extdata/LC81950252013188LGN00_B9.tif |only satellite-0.2.0/satellite/inst/extdata/LC81950252013188LGN00_BQA.tif |only satellite-0.2.0/satellite/inst/extdata/LC81950252013188LGN00_MTL.txt |only satellite-0.2.0/satellite/inst/extdata/LE71950252001211EDC00_B1.tif |only satellite-0.2.0/satellite/inst/extdata/LE71950252001211EDC00_B2.tif |only satellite-0.2.0/satellite/inst/extdata/LE71950252001211EDC00_B3.tif |only satellite-0.2.0/satellite/inst/extdata/LE71950252001211EDC00_B4.tif |only satellite-0.2.0/satellite/inst/extdata/LE71950252001211EDC00_B5.tif |only satellite-0.2.0/satellite/inst/extdata/LE71950252001211EDC00_B6_VCID_1.tif |only satellite-0.2.0/satellite/inst/extdata/LE71950252001211EDC00_B6_VCID_2.tif |only satellite-0.2.0/satellite/inst/extdata/LE71950252001211EDC00_B7.tif |only satellite-0.2.0/satellite/inst/extdata/LE71950252001211EDC00_B8.tif |only satellite-0.2.0/satellite/inst/extdata/LE71950252001211EDC00_MTL.txt |only satellite-0.2.0/satellite/inst/extdata/l7_2001-07-30_30m_crop_R_satellite.tif |only satellite-0.2.0/satellite/inst/extdata/l8_2013-07-07_30m_crop_R_satellite.tif |only satellite-0.2.0/satellite/man/calcHistMatch.Rd |only satellite-0.2.0/satellite/man/convDN2RU.Rd |only satellite-0.2.0/satellite/man/deprecated.Rd |only satellite-0.2.0/satellite/man/panSharp.Rd |only satellite-0.2.0/satellite/man/pck_data.Rd |only satellite-0.2.0/satellite/man/pck_lut.Rd |only satellite-0.2.0/satellite/man/projectSatellite.Rd |only satellite-0.2.0/satellite/tests/testthat.Rout |only satellite-0.2.0/satellite/tests/testthat/Rplots.pdf |only satellite-0.2.0/satellite/tests/testthat/test-calcHistMatch.R |only satellite-0.2.0/satellite/tests/testthat/test-calcTOAIrrad.R |only satellite-0.2.0/satellite/tests/testthat/test-convDN2RU.R |only satellite-1.0.0/satellite/DESCRIPTION | 24 satellite-1.0.0/satellite/LICENSE |only satellite-1.0.0/satellite/MD5 | 292 - satellite-1.0.0/satellite/NAMESPACE | 22 satellite-1.0.0/satellite/NEWS |only satellite-1.0.0/satellite/NEWS.md |only satellite-1.0.0/satellite/R/RcppExports.R | 8 satellite-1.0.0/satellite/R/alignGeometry.R | 21 satellite-1.0.0/satellite/R/brick.R | 102 satellite-1.0.0/satellite/R/calcAtmosCorr.R | 451 +- satellite-1.0.0/satellite/R/calcDODN.R | 120 satellite-1.0.0/satellite/R/calcEarthSunDist.R | 30 satellite-1.0.0/satellite/R/calcPathRadDOS.R | 514 +-- satellite-1.0.0/satellite/R/calcTOAIrradModel.R | 307 - satellite-1.0.0/satellite/R/calcTOAIrradRadRef.R | 223 - satellite-1.0.0/satellite/R/calcTOAIrradTable.R | 49 satellite-1.0.0/satellite/R/calcTopoCorr.R | 286 - satellite-1.0.0/satellite/R/compFilePathLandsat.R | 160 satellite-1.0.0/satellite/R/compMetaLandsat.R | 317 - satellite-1.0.0/satellite/R/convRad2BT.R | 183 - satellite-1.0.0/satellite/R/convRad2Ref.R | 243 - satellite-1.0.0/satellite/R/convSC2Rad.R | 220 - satellite-1.0.0/satellite/R/convSC2Ref.R | 252 - satellite-1.0.0/satellite/R/crop.R | 159 satellite-1.0.0/satellite/R/demTools.R | 180 - satellite-1.0.0/satellite/R/extend.R |only satellite-1.0.0/satellite/R/lutInfo.R | 319 + satellite-1.0.0/satellite/R/maskInvarFeatures.R | 262 - satellite-1.0.0/satellite/R/names.R | 108 satellite-1.0.0/satellite/R/plot.R | 28 satellite-1.0.0/satellite/R/print.R | 2 satellite-1.0.0/satellite/R/satInfo.R | 1632 ++++------ satellite-1.0.0/satellite/R/satellite-package.R | 108 satellite-1.0.0/satellite/R/satellite.R | 57 satellite-1.0.0/satellite/R/stack.R | 106 satellite-1.0.0/satellite/R/subset.R | 188 - satellite-1.0.0/satellite/R/sysdata.rda |binary satellite-1.0.0/satellite/README.md | 38 satellite-1.0.0/satellite/build/vignette.rds |binary satellite-1.0.0/satellite/data/l7.rda |binary satellite-1.0.0/satellite/data/l8.rda |binary satellite-1.0.0/satellite/inst/doc/landsat-calibration.R | 2 satellite-1.0.0/satellite/inst/doc/landsat-calibration.Rmd | 86 satellite-1.0.0/satellite/inst/doc/landsat-calibration.html | 99 satellite-1.0.0/satellite/inst/extdata/DEM.TIF |only satellite-1.0.0/satellite/inst/extdata/LC08_L1TP_195025_20130707_20170503_01_T1_B1.TIF |only satellite-1.0.0/satellite/inst/extdata/LC08_L1TP_195025_20130707_20170503_01_T1_B10.TIF |only satellite-1.0.0/satellite/inst/extdata/LC08_L1TP_195025_20130707_20170503_01_T1_B11.TIF |only satellite-1.0.0/satellite/inst/extdata/LC08_L1TP_195025_20130707_20170503_01_T1_B2.TIF |only satellite-1.0.0/satellite/inst/extdata/LC08_L1TP_195025_20130707_20170503_01_T1_B3.TIF |only satellite-1.0.0/satellite/inst/extdata/LC08_L1TP_195025_20130707_20170503_01_T1_B4.TIF |only satellite-1.0.0/satellite/inst/extdata/LC08_L1TP_195025_20130707_20170503_01_T1_B5.TIF |only satellite-1.0.0/satellite/inst/extdata/LC08_L1TP_195025_20130707_20170503_01_T1_B6.TIF |only 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satellite-1.0.0/satellite/man/calcAtmosCorr.Rd | 96 satellite-1.0.0/satellite/man/calcDODN.Rd | 32 satellite-1.0.0/satellite/man/calcEarthSunDist.Rd | 45 satellite-1.0.0/satellite/man/calcPathRadDOS.Rd | 150 satellite-1.0.0/satellite/man/calcTOAIrradModel.Rd | 52 satellite-1.0.0/satellite/man/calcTOAIrradRadRef.Rd | 48 satellite-1.0.0/satellite/man/calcTOAIrradTable.Rd | 54 satellite-1.0.0/satellite/man/calcTopoCorr.Rd | 54 satellite-1.0.0/satellite/man/compFilePathLandsat.Rd | 30 satellite-1.0.0/satellite/man/compMetaLandsat.Rd | 13 satellite-1.0.0/satellite/man/convRad2BT.Rd | 28 satellite-1.0.0/satellite/man/convRad2Ref.Rd | 38 satellite-1.0.0/satellite/man/convRef2RadLinear.Rd | 7 satellite-1.0.0/satellite/man/convSC2Rad.Rd | 37 satellite-1.0.0/satellite/man/convSC2Ref.Rd | 43 satellite-1.0.0/satellite/man/crop.Rd | 21 satellite-1.0.0/satellite/man/demTools.Rd | 21 satellite-1.0.0/satellite/man/extend.Rd |only satellite-1.0.0/satellite/man/l7.Rd | 19 satellite-1.0.0/satellite/man/l8.Rd | 20 satellite-1.0.0/satellite/man/lutInfo.Rd | 40 satellite-1.0.0/satellite/man/maskInvarFeatures.Rd | 40 satellite-1.0.0/satellite/man/names.Rd | 10 satellite-1.0.0/satellite/man/plot.Rd | 30 satellite-1.0.0/satellite/man/satInfo.Rd | 115 satellite-1.0.0/satellite/man/satellite-package.Rd | 19 satellite-1.0.0/satellite/man/satellite.Rd | 48 satellite-1.0.0/satellite/man/stack.Rd | 8 satellite-1.0.0/satellite/man/subset.Rd | 14 satellite-1.0.0/satellite/src/RcppExports.cpp | 44 satellite-1.0.0/satellite/tests/testthat.R | 73 satellite-1.0.0/satellite/tests/testthat/test-calcAtmosCorr.R | 120 satellite-1.0.0/satellite/tests/testthat/test-calcDODN.R | 38 satellite-1.0.0/satellite/tests/testthat/test-calcEarthSunDist.R | 6 satellite-1.0.0/satellite/tests/testthat/test-calcPathRadDOS.R | 178 - satellite-1.0.0/satellite/tests/testthat/test-calcTOAIrradModel.R |only satellite-1.0.0/satellite/tests/testthat/test-calcTOAIrradRadRef.R |only satellite-1.0.0/satellite/tests/testthat/test-calcTOAIrradTable.R |only satellite-1.0.0/satellite/tests/testthat/test-compMetaLandsat.R | 51 satellite-1.0.0/satellite/tests/testthat/test-extend.R |only satellite-1.0.0/satellite/tests/testthat/test-maskInvarFeatures.R | 40 satellite-1.0.0/satellite/tests/testthat/test-satInfo.R | 40 satellite-1.0.0/satellite/tests/testthat/test-satInvarFeatures.R | 30 satellite-1.0.0/satellite/tests/testthat/test-satellite.R | 169 - satellite-1.0.0/satellite/vignettes/landsat-calibration.Rmd | 86 satellite-1.0.0/satellite/vignettes/satellite.Rmd |only 168 files changed, 4608 insertions(+), 4650 deletions(-)
Title: Prediction Rule Ensembles
Description: Derives prediction rule ensembles (PREs). Largely follows the
procedure for deriving PREs as described in Friedman & Popescu (2008;
<DOI:10.1214/07-AOAS148>), with several adjustments and improvements. The
main function pre() derives prediction rule ensembles consisting of rules
and/or linear terms for binary, count and continuous responses. Function
gpe() derives generalized prediction ensembles, consisting of rules, hinge
and linear functions of the predictor variables.
Author: Marjolein Fokkema [aut, cre], Benjamin Christoffersen [aut]
Maintainer: Marjolein Fokkema <m.fokkema@fsw.leidenuniv.nl>
Diff between pre versions 0.2 dated 2017-04-26 and 0.3.0 dated 2017-08-03
pre-0.2/pre/README |only pre-0.3.0/pre/DESCRIPTION | 39 pre-0.3.0/pre/MD5 | 104 +- pre-0.3.0/pre/NAMESPACE | 33 pre-0.3.0/pre/NEWS | 56 + pre-0.3.0/pre/R/gpe.R |only pre-0.3.0/pre/R/gpe_miscs.R |only pre-0.3.0/pre/R/partykit_utils.R |only pre-0.3.0/pre/R/pre.R | 1808 ++++++++++++++++++++---------------- pre-0.3.0/pre/README.md |only pre-0.3.0/pre/inst |only pre-0.3.0/pre/man/bsnullinteract.Rd | 6 pre-0.3.0/pre/man/coef.pre.Rd | 25 pre-0.3.0/pre/man/corplot.Rd |only pre-0.3.0/pre/man/cvpre.Rd | 13 pre-0.3.0/pre/man/gpe.Rd |only pre-0.3.0/pre/man/gpe_cv.glmnet.Rd |only pre-0.3.0/pre/man/gpe_sample.Rd |only pre-0.3.0/pre/man/gpe_trees.Rd |only pre-0.3.0/pre/man/importance.Rd | 75 - pre-0.3.0/pre/man/interact.Rd | 88 + pre-0.3.0/pre/man/pairplot.Rd | 46 pre-0.3.0/pre/man/plot.pre.Rd | 32 pre-0.3.0/pre/man/pre.Rd | 170 ++- pre-0.3.0/pre/man/predict.gpe.Rd |only pre-0.3.0/pre/man/predict.pre.Rd | 8 pre-0.3.0/pre/man/print.pre.Rd | 32 pre-0.3.0/pre/man/rTerm.Rd |only pre-0.3.0/pre/man/singleplot.Rd | 9 pre-0.3.0/pre/tests |only 30 files changed, 1561 insertions(+), 983 deletions(-)
Title: Manipulate DESCRIPTION Files
Description: Tools to read, write, create, and manipulate DESCRIPTION files.
It is intended for packages that create or manipulate other packages.
Author: Gábor Csárdi [aut, cre],
Kirill Müller [aut]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between desc versions 1.1.0 dated 2017-01-27 and 1.1.1 dated 2017-08-03
DESCRIPTION | 12 ++++++------ MD5 | 21 +++++++++++---------- NEWS.md | 4 ++++ R/authors-at-r.R | 23 +++++++++++++++++++++-- R/read.R | 9 +++++++++ inst/DESCRIPTION | 4 ++-- inst/NEWS.md | 4 ++++ inst/README.Rmd | 8 ++++---- inst/README.md | 20 ++++++++++---------- tests/testthat/D5 |only tests/testthat/test-checks.R | 2 +- tests/testthat/test-read.R | 7 +++++++ 12 files changed, 79 insertions(+), 35 deletions(-)
Title: Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans and
K-Medoids Clustering
Description: Gaussian mixture models, k-means, mini-batch-kmeans and k-medoids
clustering with the option to plot, validate, predict (new data) and estimate the
optimal number of clusters. The package takes advantage of 'RcppArmadillo' to
speed up the computationally intensive parts of the functions.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between ClusterR versions 1.0.5 dated 2017-02-11 and 1.0.6 dated 2017-08-03
DESCRIPTION | 10 MD5 | 61 NEWS.md | 5 R/clustering_functions.R | 3937 +++++----- README.md | 1 build/vignette.rds |binary inst/doc/the_clusterR_package.html | 12 man/Clara_Medoids.Rd | 7 man/Cluster_Medoids.Rd | 7 man/GMM.Rd | 1 man/KMeans_arma.Rd | 1 man/KMeans_rcpp.Rd | 1 man/MiniBatchKmeans.Rd | 7 man/Optimal_Clusters_GMM.Rd | 1 man/Optimal_Clusters_KMeans.Rd | 1 man/Optimal_Clusters_Medoids.Rd | 4 man/Silhouette_Dissimilarity_Plot.Rd | 1 man/center_scale.Rd | 1 man/distance_matrix.Rd | 1 man/entropy_formula.Rd | 1 man/external_validation.Rd | 3 man/function_interactive.Rd | 1 man/plot_2d.Rd | 1 man/predict_GMM.Rd | 1 man/predict_KMeans.Rd | 1 man/predict_MBatchKMeans.Rd | 1 man/predict_Medoids.Rd | 1 man/tryCatch_GMM.Rd | 1 man/tryCatch_KMEANS_arma.Rd | 1 man/tryCatch_optimal_clust_GMM.Rd | 1 src/init.c |only tests/testthat/test-plot2d_silhouette_plot_ext_validation_center_scale_dist_mat.R | 910 +- 32 files changed, 2489 insertions(+), 2493 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-11 0.1.7
2017-06-26 0.1.6
2017-06-12 0.1.5
2017-06-07 0.1.2
2017-06-06 0.1.1
2017-05-28 0.1.0
Title: Significance Brackets for 'ggplot2'
Description: Enrich your 'ggplots' with group-wise comparisons.
This package provides an easy way to indicate if two groups are significantly different.
Commonly this is shown by a bracket on top connecting the groups of interest which itself is annotated with the level of significance (NS, *, **, ***).
The package provides a single layer (geom_signif()) that takes the groups for comparison and the test (t.test(), wilcox.text() etc.) as arguments and adds the annotation
to the plot.
Author: Constantin Ahlmann-Eltze [aut, cre]
Maintainer: Constantin Ahlmann-Eltze <artjom31415@googlemail.com>
Diff between ggsignif versions 0.3.0 dated 2017-06-25 and 0.4.0 dated 2017-08-03
ggsignif-0.3.0/ggsignif/tools/README-cache/simpe_comparison_3a7ee68b398f18350bf783ab5d28cf36.RData |only ggsignif-0.3.0/ggsignif/tools/README-cache/simpe_comparison_3a7ee68b398f18350bf783ab5d28cf36.rdb |only ggsignif-0.3.0/ggsignif/tools/README-cache/simpe_comparison_3a7ee68b398f18350bf783ab5d28cf36.rdx |only ggsignif-0.4.0/ggsignif/DESCRIPTION | 6 ggsignif-0.4.0/ggsignif/MD5 | 33 ++-- ggsignif-0.4.0/ggsignif/NEWS.md | 5 ggsignif-0.4.0/ggsignif/R/significance_annotation.R | 73 ++++++++-- ggsignif-0.4.0/ggsignif/README.md | 40 ++++- ggsignif-0.4.0/ggsignif/build/vignette.rds |binary ggsignif-0.4.0/ggsignif/inst/doc/intro.html | 6 ggsignif-0.4.0/ggsignif/man/stat_signif.Rd | 7 ggsignif-0.4.0/ggsignif/tests/testthat/Rplots.pdf |binary ggsignif-0.4.0/ggsignif/tests/testthat/test-significance_annotation.R | 15 ++ ggsignif-0.4.0/ggsignif/tools/README-cache/faceted_comparison_69c8749b9264a70296877658d75692b1.RData |only ggsignif-0.4.0/ggsignif/tools/README-cache/faceted_comparison_69c8749b9264a70296877658d75692b1.rdb |only ggsignif-0.4.0/ggsignif/tools/README-cache/faceted_comparison_69c8749b9264a70296877658d75692b1.rdx |only ggsignif-0.4.0/ggsignif/tools/README-cache/simpe_comparison_0904ec0533f7aab714e0411dded9c4f7.RData |only ggsignif-0.4.0/ggsignif/tools/README-cache/simpe_comparison_0904ec0533f7aab714e0411dded9c4f7.rdb |only ggsignif-0.4.0/ggsignif/tools/README-cache/simpe_comparison_0904ec0533f7aab714e0411dded9c4f7.rdx |only ggsignif-0.4.0/ggsignif/tools/README-cache/unnamed-chunk-3_29cd83bc0629ffda033f94aa9a07f3f2.RData |only ggsignif-0.4.0/ggsignif/tools/README-cache/unnamed-chunk-3_29cd83bc0629ffda033f94aa9a07f3f2.rdb |only ggsignif-0.4.0/ggsignif/tools/README-cache/unnamed-chunk-3_29cd83bc0629ffda033f94aa9a07f3f2.rdx |only ggsignif-0.4.0/ggsignif/tools/README-fig/faceted_comparison-1.png |only ggsignif-0.4.0/ggsignif/tools/README-fig/simpe_comparison-1.png |binary 24 files changed, 147 insertions(+), 38 deletions(-)
Title: Visual Regression Testing and Graphical Diffing
Description: An extension to the 'testthat' package that makes it easy
to add graphical unit tests. It provides a Shiny application to
manage the test cases.
Author: Lionel Henry [cre, aut],
RStudio [cph],
Carl Sutherland [aut] (jg-imagediff library),
Humble Software [cph] (jg-imagediff library),
David Hong [aut] (TwoFace library),
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/htmlwidgets/lib/jquery-authors.txt)
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between vdiffr versions 0.1.1 dated 2016-11-15 and 0.2.0 dated 2017-08-03
DESCRIPTION | 21 +-- MD5 | 68 +++++---- NAMESPACE | 9 - NEWS.md | 48 ++++++ R/RcppExports.R | 2 R/cases-ui.R | 4 R/cases.R | 85 +++++++----- R/shiny-server.R | 14 +- R/testthat-reporter.R | 46 ++++-- R/testthat-ui.R | 132 +++++++++++++++---- R/utils.R | 96 +++++++++++++ R/vdiffr.R | 10 - README.md | 64 +++------ man/add_dependency.Rd | 1 man/collect_cases.Rd | 3 man/expect_doppelganger.Rd | 13 + man/htmlwidgets.Rd | 9 - man/manage_cases.Rd | 1 man/shinybindings.Rd | 9 - man/validate_cases.Rd | 3 man/vdiffr-package.Rd |only man/vdiffrAddin.Rd | 1 src/RcppExports.cpp | 12 + tests/testthat.R | 18 ++ tests/testthat/helper-mock.R | 39 ++++- tests/testthat/mock-pkg-skip-newer |only tests/testthat/mock-pkg-skip-older |only tests/testthat/mock-pkg/tests/figs/deps.txt | 9 - tests/testthat/mock-pkg/tests/testthat/test-failed.R | 4 tests/testthat/test-deps.R | 14 ++ tests/testthat/test-freetype.R |only tests/testthat/test-mismatch.R |only tests/testthat/test-orphaned.R | 6 tests/testthat/test-zzz.R |only 34 files changed, 539 insertions(+), 202 deletions(-)
Title: Spatial Extent as Polygons with Projection
Description: Functions to produce a fully fledged 'geo-spatial' object extent as a
'SpatialPolygonsDataFrame'. Also included are functions to generate polygons
from raster data using 'quadmesh' techniques, a round number buffered extent, and
general spatial-extent and 'raster-like' extent helpers missing from the originating
packages.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between spex versions 0.3.0 dated 2017-05-17 and 0.4.0 dated 2017-08-03
DESCRIPTION | 14 + MD5 | 40 ++--- NAMESPACE | 57 ++++--- NEWS.md | 37 +++- R/buffer_extent.R | 118 +++++++-------- R/qm_rasterToPolygons.r | 170 +++++++++++----------- R/spex-package.r | 59 ++++--- R/spex.R | 194 ++++++++++++++++--------- README.md | 266 ++++++++++++++++++++--------------- data/psf.rda |only man/as_double.Rd | 76 +++++----- man/buffer_extent.Rd | 68 ++++---- man/extent.Rd |only man/lux.Rd | 42 ++--- man/polygonize.Rd | 133 ++++++++--------- man/psf.Rd |only man/spex.Rd | 173 +++++++++++----------- man/xlim.Rd |only tests/testthat.R | 8 - tests/testthat/test-buffer.R | 14 - tests/testthat/test-sf-from-raster.R | 60 ++++--- tests/testthat/test-spex-any.R | 14 - tests/testthat/test-spex-extent.R | 43 ++++- 23 files changed, 875 insertions(+), 711 deletions(-)
Title: The 'jamovi' Analyses
Description: A suite of common statistical methods such as descriptives,
t-tests, ANOVAs, correlation matrices, proportion tests, contingency tables,
and factor analysis. This package is also useable from the 'jamovi'
statistical spreadsheet (see <https://www.jamovi.org> for more information).
Author: Ravi Selker, Jonathon Love, Damian Dropmann
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmv versions 0.7.3.5 dated 2017-06-06 and 0.7.5.6 dated 2017-08-03
jmv-0.7.3.5/jmv/R/loglinear.b.R |only jmv-0.7.3.5/jmv/R/loglinear.h.R |only jmv-0.7.3.5/jmv/man/logLinear.Rd |only jmv-0.7.5.6/jmv/DESCRIPTION | 21 jmv-0.7.5.6/jmv/MD5 | 69 - jmv-0.7.5.6/jmv/NAMESPACE | 4 jmv-0.7.5.6/jmv/R/ancova.h.R | 134 ++- jmv-0.7.5.6/jmv/R/anova.b.R | 12 jmv-0.7.5.6/jmv/R/anova.h.R | 25 jmv-0.7.5.6/jmv/R/anovanp.h.R | 64 + jmv-0.7.5.6/jmv/R/anovarm.b.R | 2 jmv-0.7.5.6/jmv/R/anovarm.h.R | 349 +++++++-- jmv-0.7.5.6/jmv/R/anovarmnp.h.R | 64 + jmv-0.7.5.6/jmv/R/cfa.b.R | 13 jmv-0.7.5.6/jmv/R/cfa.h.R | 381 ++++++++-- jmv-0.7.5.6/jmv/R/conttables.b.R | 19 jmv-0.7.5.6/jmv/R/conttables.h.R | 214 ++++- jmv-0.7.5.6/jmv/R/conttablespaired.h.R | 115 ++- jmv-0.7.5.6/jmv/R/corrmatrix.h.R | 140 +++ jmv-0.7.5.6/jmv/R/descriptives.b.R | 817 +++++++++++++++++++--- jmv-0.7.5.6/jmv/R/descriptives.h.R | 308 +++++--- jmv-0.7.5.6/jmv/R/efa.b.R | 4 jmv-0.7.5.6/jmv/R/efa.h.R | 20 jmv-0.7.5.6/jmv/R/linreg.h.R | 316 ++++++-- jmv-0.7.5.6/jmv/R/mancova.h.R | 269 +++++-- jmv-0.7.5.6/jmv/R/pca.h.R | 181 +++- jmv-0.7.5.6/jmv/R/proptest2.h.R | 68 + jmv-0.7.5.6/jmv/R/proptestn.h.R | 78 +- jmv-0.7.5.6/jmv/R/reliability.h.R | 79 +- jmv-0.7.5.6/jmv/R/ttestis.h.R | 417 +++++++++-- jmv-0.7.5.6/jmv/R/ttestones.h.R | 269 +++++-- jmv-0.7.5.6/jmv/R/ttestps.h.R | 312 ++++++-- jmv-0.7.5.6/jmv/R/utils.R | 51 + jmv-0.7.5.6/jmv/man/cfa.Rd | 2 jmv-0.7.5.6/jmv/man/descriptives.Rd | 75 +- jmv-0.7.5.6/jmv/tests/testthat/testcfa.R | 6 jmv-0.7.5.6/jmv/tests/testthat/testdescriptives.R | 13 37 files changed, 3896 insertions(+), 1015 deletions(-)
Title: Brazilian Economic Time Series
Description: It provides access to and information about the most important
Brazilian economic time series - from the Getulio Vargas Foundation <http://portal.fgv.br/en>,
the Central Bank of Brazil <http://www.bcb.gov.br> and the Brazilian Institute of Geography
and Statistics <http://www.ibge.gov.br>. It also presents tools for managing, analysing (e.g.
generating dynamic reports with a complete analysis of a series) and exporting
these time series.
Author: Pedro Costa Ferreira [aut, cre],
Talitha Speranza [aut],
Jonatha Azevedo [aut],
Fernando Teixeira [aut]
Maintainer: Pedro Costa Ferreira <pedro.guilherme@fgv.br>
Diff between BETS versions 0.3.0 dated 2017-07-22 and 0.3.1 dated 2017-08-03
DESCRIPTION | 8 MD5 | 21 +- NAMESPACE | 4 R/BETS.arch_test.R |only R/draw.iie_br.R | 9 R/draw.survey.R | 2 inst/custom_dashboard.Rmd | 32 +-- inst/doc/BETS_basic_usage.html | 4 inst/graphs |only inst/sondagens_completo_fgv.csv | 394 ++++++++++++++++++++-------------------- man/BETS.arch_test.Rd |only vignettes/biblio.bib | 6 12 files changed, 247 insertions(+), 233 deletions(-)
Title: Tools for 'CRAN'-Like Repositories
Description: A set of functions to manage 'CRAN'-like repositories
efficiently.
Author: Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between cranlike versions 1.0.0 dated 2017-04-27 and 1.0.1 dated 2017-08-03
cranlike |only 1 file changed
Title: Bayesian Fractional Polynomials for GLMs
Description: Implements the Bayesian paradigm
for fractional polynomials in generalized linear
models, described by Held, Gravestock, Sabanes Bove (2015) <doi:10.1214/14-STS510>.
See package 'bfp' for the treatment of normal
models.
Author: Isaac Gravestock [aut, cre],
Daniel Sabanes Bove [aut],
David Maisonave [ctb],
Terry Therneau [ctb],
R Core Team [ctb]
Maintainer: Isaac Gravestock <isaac.gravestock@uzh.ch>
Diff between glmBfp versions 0.0-48 dated 2016-07-07 and 0.0-51 dated 2017-08-03
ChangeLog | 4 DESCRIPTION | 15 +- MD5 | 94 +++++++++--------- NAMESPACE | 13 +- R/GlmBayesMfp-methods.R | 8 + R/GlmBayesMfpSamples-class.R | 4 R/GlmBayesMfpSamples-methods.R | 9 + R/RcppExports.R | 28 +++++ R/computeModels.R | 15 +- R/coxTBF.R | 6 - R/evalZdensity.R | 13 +- R/getDesignMatrix.R | 52 ++++++---- R/getModelCoefs.R | 2 R/glmBayesMfp.R | 130 +++++++++++++++++++------ R/optimize.R | 12 -- R/predictCoxTBF.R | 38 ++++--- R/sampleBma.R | 26 +++-- R/sampleGlm.R | 93 ++++++++++++------ R/testCox.R | 11 -- R/writeFormula.R | 8 + build/vignette.rds |binary cleanup | 2 inst/doc/examples.Rnw | 4 inst/doc/examples.pdf |binary man/GlmBayesMfpSamples-class.Rd | 2 man/getDesignMatrix.Rd | 4 man/glmBayesMfp.Rd | 7 + src/Makevars.in | 1 src/Makevars.win | 2 src/RcppExports.cpp | 126 +++++++++++++++++++++++-- src/bfgs.cpp | 43 ++++---- src/coxfit.cpp | 49 ++++----- src/dataStructure.cpp | 47 +++++++-- src/dataStructure.h | 15 +- src/design.cpp | 27 +++++ src/design.h | 1 src/evalZdensity.cpp | 77 +++++++++++---- src/fpUcHandling.h | 20 +++ src/glmBayesMfp.cpp | 201 ++++++++++++++++++++++++++++++++-------- src/iwls.cpp | 160 +++++++++++++++++++++++++++++++ src/iwls.h | 15 ++ src/optimize.cpp | 29 ++--- src/rcppExport.h | 13 -- src/sampleGlm.cpp | 106 +++++++++++++++------ src/sum.h | 2 src/zdensity.cpp | 7 - src/zdensity.h | 1 vignettes/examples.Rnw | 4 48 files changed, 1142 insertions(+), 404 deletions(-)
Title: Hierarchical Modelling of Faecal Egg Counts
Description: An implementation of hierarchical models
for faecal egg count data to assess anthelmintic
efficacy. Bayesian inference is done via MCMC sampling using Stan.
Author: Craig Wang [cre, aut],
Michaela Paul [aut],
Reinhard Furrer [ctb],
Trustees of Columbia University [cph] (rstanarm)
Maintainer: Craig Wang <craig.wang@uzh.ch>
Diff between eggCounts versions 1.3 dated 2017-01-25 and 1.4 dated 2017-08-03
DESCRIPTION | 18 - MD5 | 35 +- NAMESPACE | 3 R/fec_stan.R | 2 R/fecr_models_stan.R | 22 - R/fecr_stan.R | 2 R/plotCounts.R |only R/zzz.R | 5 inst/CITATION | 6 inst/NEWS | 34 +- man/eggCounts-package.Rd | 4 man/fec_stan.Rd | 10 man/fecr_stan.Rd | 8 man/plotCounts.Rd |only src/Makevars | 3 src/Makevars.win | 2 src/Modules.cpp | 12 src/include/models.hpp | 619 +++++++++++++++++++++++++++++++---------------- src/init.cpp |only tools/make_cpp.R | 2 20 files changed, 504 insertions(+), 283 deletions(-)
Title: SNP-Set (Sequence) Kernel Association Test
Description: Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.
Author: Seunggeun (Shawn) Lee, with contributions from Larisa Miropolsky and Michael Wu
Maintainer: Seunggeun (Shawn) Lee <leeshawn@umich.edu>
Diff between SKAT versions 1.3.2 dated 2017-07-24 and 1.3.2.1 dated 2017-08-03
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/kernel_func.cpp | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: A Flexible Container to Transport and Manipulate Data and
Associated Resources
Description: Provides a flexible container to transport and
manipulate complex sets of data. These data may consist of multiple data files and
associated meta data and ancillary files. Individual data objects have
associated system level meta data, and data files are linked together using
the OAI-ORE standard resource map which describes the relationships between the files.
The OAI-ORE standard is described at <https://www.openarchives.org/ore>. Data packages
can be serialized and transported as structured files that have been created following
the BagIt specification. The BagIt specification is described at
<https://tools.ietf.org/html/draft-kunze-bagit-08>.
Author: Matthew B. Jones [aut, cre],
Peter Slaughter [aut],
Regents of the University of California [cph]
Maintainer: Matthew B. Jones <jones@nceas.ucsb.edu>
Diff between datapack versions 1.2.0 dated 2017-04-07 and 1.3.0 dated 2017-08-03
datapack |only 1 file changed
Title: Dependencies for the 'jamovi' Framework
Description: 'jamovi' is a framework for creating rich interactive statistical
analyses (see <https://www.jamovi.org> for more information). This package
represents the core libraries which jamovi analyses written in R depend
upon.
Author: Jonathon Love
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmvcore versions 0.5.5 dated 2017-05-17 and 0.7 dated 2017-08-03
jmvcore-0.5.5/jmvcore/tests/testthat/test-profiletable.R |only jmvcore-0.7/jmvcore/DESCRIPTION | 9 - jmvcore-0.7/jmvcore/MD5 | 27 ++-- jmvcore-0.7/jmvcore/R/analysis.R | 49 +++++--- jmvcore-0.7/jmvcore/R/array.R | 21 ++- jmvcore-0.7/jmvcore/R/cell.R | 59 ++++++---- jmvcore-0.7/jmvcore/R/column.R | 17 +-- jmvcore-0.7/jmvcore/R/group.R | 12 +- jmvcore-0.7/jmvcore/R/html.R | 57 +++++----- jmvcore-0.7/jmvcore/R/image.R | 20 ++- jmvcore-0.7/jmvcore/R/options.R | 83 +++++++-------- jmvcore-0.7/jmvcore/R/preformatted.R | 5 jmvcore-0.7/jmvcore/R/protobuf.R | 9 + jmvcore-0.7/jmvcore/R/results.R | 27 ++-- jmvcore-0.7/jmvcore/R/table.R | 18 +-- 15 files changed, 232 insertions(+), 181 deletions(-)
Title: Efficient Initials for Computing the Maximal Eigenpair
Description: An implementation for using efficient initials to compute the
maximal eigenpair in R. It provides two algorithms to find the efficient
initials under two cases: the tridiagonal matrix case and the general matrix
case. Besides, it also provides algorithms for the next to the maximal eigenpair under
these two cases.
Author: Mu-Fa Chen <mfchen@bnu.edu.cn>
Maintainer: Xiao-Jun Mao <maoxj.ki@gmail.com>
Diff between EfficientMaxEigenpair versions 0.1.2 dated 2017-07-23 and 0.1.3 dated 2017-08-03
EfficientMaxEigenpair-0.1.2/EfficientMaxEigenpair/inst/doc/EfficientMaxEigenpair.pdf |only EfficientMaxEigenpair-0.1.2/EfficientMaxEigenpair/vignettes/EfficientMaxEigenpair.html |only EfficientMaxEigenpair-0.1.3/EfficientMaxEigenpair/DESCRIPTION | 8 +-- EfficientMaxEigenpair-0.1.3/EfficientMaxEigenpair/MD5 | 13 ++---- EfficientMaxEigenpair-0.1.3/EfficientMaxEigenpair/README.md | 5 ++ EfficientMaxEigenpair-0.1.3/EfficientMaxEigenpair/build/vignette.rds |binary EfficientMaxEigenpair-0.1.3/EfficientMaxEigenpair/inst/doc/EfficientMaxEigenpair.Rmd | 21 +++++----- EfficientMaxEigenpair-0.1.3/EfficientMaxEigenpair/inst/doc/EfficientMaxEigenpair.html |only EfficientMaxEigenpair-0.1.3/EfficientMaxEigenpair/vignettes/EfficientMaxEigenpair.Rmd | 21 +++++----- 9 files changed, 37 insertions(+), 31 deletions(-)
More information about EfficientMaxEigenpair at CRAN
Permanent link
Title: Tools for Accessing the Botanical Information and Ecology
Network Database
Description: Provides Tools for Accessing the Botanical Information and Ecology Network Database. The BIEN database contains cleaned and standardized botanical data including occurrence, trait, plot and taxonomic data (See <http://Bien.nceas.ucsb.edu/bien/> for more Information). This package provides functions that query the BIEN database by constructing and executing optimized SQL queries.
Author: Brian Maitner [aut, cre]
Maintainer: Brian Maitner <bmaitner@gmail.com>
Diff between BIEN versions 1.2.1 dated 2017-07-31 and 1.2.2 dated 2017-08-03
DESCRIPTION | 6 ++--- MD5 | 24 ++++++++++---------- NEWS | 12 +++++++++- R/BIEN.R | 23 ++++++++++--------- inst/doc/BIEN.html | 4 +-- inst/doc/BIEN_tutorial.R | 42 ++++++++++++++++++++--------------- inst/doc/BIEN_tutorial.Rmd | 18 ++++++++++----- inst/doc/BIEN_tutorial.html | 16 +++++++++---- man/BIEN_ranges_box.Rd | 4 +-- man/BIEN_ranges_genus.Rd | 8 +++--- man/BIEN_ranges_intersect_species.Rd | 4 +-- man/BIEN_ranges_species.Rd | 7 +++-- vignettes/BIEN_tutorial.Rmd | 18 ++++++++++----- 13 files changed, 111 insertions(+), 75 deletions(-)