Title: Construct Complex Table with 'kable' and Pipe Syntax
Description: A collection of functions to help build complex HTML or 'LaTeX'
tables using 'kable()' from 'knitr' and the piping syntax from 'magrittr'.
Function 'kable()' is a light weight table generator coming from 'knitr'.
This package simplifies the way to manipulate the HTML or 'LaTeX' codes
generated by 'kable()' and allows users to construct complex tables
and customize styles using a readable syntax.
Author: Hao Zhu [aut, cre],
Will Beasley [ctb],
Yihui Xie [ctb],
Thomas Travison [ctb],
GuangChuang Yu [ctb],
Stéphane Laurent [ctb]
Maintainer: Hao Zhu <haozhu233@gmail.com>
Diff between kableExtra versions 0.3.0 dated 2017-07-03 and 0.4.0 dated 2017-08-06
kableExtra-0.3.0/kableExtra/inst/NEWS |only kableExtra-0.3.0/kableExtra/man/magic_mirror_html.Rd |only kableExtra-0.3.0/kableExtra/man/magic_mirror_latex.Rd |only kableExtra-0.4.0/kableExtra/DESCRIPTION | 15 - kableExtra-0.4.0/kableExtra/MD5 | 53 +++-- kableExtra-0.4.0/kableExtra/NAMESPACE | 3 kableExtra-0.4.0/kableExtra/R/add_header_above.R | 53 +++-- kableExtra-0.4.0/kableExtra/R/add_indent.R | 5 kableExtra-0.4.0/kableExtra/R/collapse_rows.R | 7 kableExtra-0.4.0/kableExtra/R/column_spec.R | 31 ++- kableExtra-0.4.0/kableExtra/R/group_rows.R | 28 ++- kableExtra-0.4.0/kableExtra/R/kableExtra-package.R | 8 kableExtra-0.4.0/kableExtra/R/kable_styling.R | 62 +++++- kableExtra-0.4.0/kableExtra/R/magic_mirror.R | 9 kableExtra-0.4.0/kableExtra/R/row_spec.R | 26 +- kableExtra-0.4.0/kableExtra/R/scroll_box.R |only kableExtra-0.4.0/kableExtra/R/util.R | 21 +- kableExtra-0.4.0/kableExtra/R/zzz.R | 1 kableExtra-0.4.0/kableExtra/build/vignette.rds |binary kableExtra-0.4.0/kableExtra/inst/NEWS.html |only kableExtra-0.4.0/kableExtra/inst/NEWS.md |only kableExtra-0.4.0/kableExtra/inst/doc/awesome_table_in_html.html | 93 ++++------ kableExtra-0.4.0/kableExtra/inst/doc/awesome_table_in_pdf.R |only kableExtra-0.4.0/kableExtra/inst/doc/awesome_table_in_pdf.Rmd |only kableExtra-0.4.0/kableExtra/inst/doc/awesome_table_in_pdf.pdf |only kableExtra-0.4.0/kableExtra/man/add_header_above.Rd | 9 kableExtra-0.4.0/kableExtra/man/column_spec.Rd | 5 kableExtra-0.4.0/kableExtra/man/group_rows.Rd | 6 kableExtra-0.4.0/kableExtra/man/kableExtra-package.Rd | 4 kableExtra-0.4.0/kableExtra/man/kable_styling.Rd | 5 kableExtra-0.4.0/kableExtra/man/row_spec.Rd | 6 kableExtra-0.4.0/kableExtra/man/scroll_box.Rd |only kableExtra-0.4.0/kableExtra/vignettes/awesome_table_in_pdf.Rmd |only 33 files changed, 277 insertions(+), 173 deletions(-)
Title: Permutation p-Value Estimation for Gene Set Tests
Description: Code for various permutation p-values estimation methods for gene set test. The description of corresponding methods can be found in the dissertation of Yu He(2016) "Efficient permutation P-value estimation for gene set tests" <https://searchworks.stanford.edu/view/11849351>. One of the methods also corresponds to the paper "Permutation p-value approximation via generalized Stolarsky invariance" <arXiv:1603.02757>.
Author: Hera He <njheyu@gmail.com>
Maintainer: Hera He <njheyu@gmail.com>
Diff between pipeGS versions 0.1 dated 2016-11-16 and 0.2 dated 2017-08-06
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/stolarsky.R | 10 +++++----- 3 files changed, 12 insertions(+), 12 deletions(-)
Title: Functions and Methods for Correspondence Regression
Description: A collection of tools for correspondence regression, i.e. the
correspondence analysis of the crosstabulation of a categorical variable Y
in function of another one X, where X can in turn be made up of the
combination of various categorical variables. Consequently, correspondence
regression can be used to analyze the effects for a polytomous or
multinomial outcome variable.
Author: Koen Plevoets [aut, cre]
Maintainer: Koen Plevoets <koen.plevoets@kuleuven.be>
Diff between corregp versions 1.0.2 dated 2017-05-08 and 1.0.3 dated 2017-08-06
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/CITATION | 2 +- inst/doc/corregp.pdf |binary 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Handling Taxonomic Lists
Description: Handling taxonomic lists through objects of class 'taxlist'.
This package provides functions to import species lists from 'Turboveg'
(<https://www.synbiosys.alterra.nl/turboveg>) and the possibility to create
backups from resulting R-objects.
Also quick displays are implemented in the summary-methods.
Author: Miguel Alvarez <kamapu78@gmail.com>
Maintainer: Miguel Alvarez <kamapu78@gmail.com>
Diff between taxlist versions 0.1.1 dated 2017-07-23 and 0.1.2 dated 2017-08-06
DESCRIPTION | 10 +++++----- MD5 | 18 ++++++++++-------- NAMESPACE | 1 + R/merge_taxa.R |only R/summary.R | 12 +++++++++--- data/Easplist.rda |binary inst/ChangeLog | 32 ++++++++++++++++++-------------- inst/doc/taxlist-intro.html | 4 ++-- man/merge_taxa.Rd |only man/subset.Rd | 2 +- man/summary.Rd | 6 +++++- 11 files changed, 51 insertions(+), 34 deletions(-)
Title: R to Solr Interface
Description: A comprehensive R API for querying Apache Solr databases.
A Solr core is represented as a data frame or list that
supports Solr-side filtering, sorting,
transformation and aggregation, all through the familiar
base R API. Queries are processed
lazily, i.e., a query is only sent to the database when
the data are required.
Author: Michael Lawrence, Gabe Becker, Jan Vogel
Maintainer: Michael Lawrence <michafla@gene.com>
Diff between rsolr versions 0.0.4 dated 2017-04-10 and 0.0.8 dated 2017-08-06
rsolr-0.0.4/rsolr/src |only rsolr-0.0.8/rsolr/DESCRIPTION | 12 ++++---- rsolr-0.0.8/rsolr/MD5 | 28 +++++++++----------- rsolr-0.0.8/rsolr/NAMESPACE | 5 ++- rsolr-0.0.8/rsolr/R/FieldInfo-class.R | 1 rsolr-0.0.8/rsolr/R/FieldType-class.R | 30 ++++++++++++++++------ rsolr-0.0.8/rsolr/R/Solr-class.R | 2 - rsolr-0.0.8/rsolr/R/SolrCore-class.R | 6 +--- rsolr-0.0.8/rsolr/R/SolrQuery-class.R | 8 ++++- rsolr-0.0.8/rsolr/R/SolrSchema-class.R | 17 ++++++++---- rsolr-0.0.8/rsolr/R/test.R | 2 - rsolr-0.0.8/rsolr/R/utils.R | 13 +-------- rsolr-0.0.8/rsolr/build/vignette.rds |binary rsolr-0.0.8/rsolr/inst/doc/intro.pdf |binary rsolr-0.0.8/rsolr/inst/unitTests/test_SolrQuery.R | 2 - 15 files changed, 70 insertions(+), 56 deletions(-)
Title: R Interface to RESTful Web Services
Description: Models a RESTful service as if it were a nested R list.
Author: Michael Lawrence
Maintainer: Michael Lawrence <michafla@gene.com>
Diff between restfulr versions 0.0.11 dated 2017-03-12 and 0.0.13 dated 2017-08-06
DESCRIPTION | 6 ++++-- MD5 |only NAMESPACE | 4 ++-- R/HTTP-class.R | 8 ++++---- R/RestUri-class.R | 17 +---------------- man/RestUri-class.Rd | 8 ++++---- 6 files changed, 15 insertions(+), 28 deletions(-)
Title: Multivariate, Locally Stationary Wavelet Process Estimation
Description: Tools for analysing multivariate time series with wavelets. This includes: simulation of a multivariate locally stationary wavelet (mvLSW) process from a multivariate evolutionary wavelet spectrum (mvEWS); estimation of the mvEWS, local coherence and local partial coherence. See Park, Eckley and Ombao (2014) <doi:10.1109/TSP.2014.2343937> for details.
Author: Simon Taylor [aut, cre],
Tim Park [aut],
Idris Eckley [ths],
Rebecca Killick [ctb]
Maintainer: Simon Taylor <s.taylor2@lancaster.ac.uk>
Diff between mvLSW versions 1.1 dated 2017-02-24 and 1.2 dated 2017-08-06
mvLSW-1.1/mvLSW/man/Asymp_Quantile.Rd |only mvLSW-1.1/mvLSW/man/Autocorrelation.Rd |only mvLSW-1.2/mvLSW/ChangeLog |only mvLSW-1.2/mvLSW/DESCRIPTION | 14 +-- mvLSW-1.2/mvLSW/MD5 | 32 ++++---- mvLSW-1.2/mvLSW/NAMESPACE | 2 mvLSW-1.2/mvLSW/R/mvLSW.R | 44 +++++++++-- mvLSW-1.2/mvLSW/inst |only mvLSW-1.2/mvLSW/man/ApxCI.Rd |only mvLSW-1.2/mvLSW/man/AutocorrIP.Rd |only mvLSW-1.2/mvLSW/man/Spectrum2Transfer.Rd | 20 ++--- mvLSW-1.2/mvLSW/man/as.mvLSW.Rd | 51 +++++++----- mvLSW-1.2/mvLSW/man/coherence.Rd | 16 ++-- mvLSW-1.2/mvLSW/man/mvEWS.rd | 120 +++++++++++++++--------------- mvLSW-1.2/mvLSW/man/mvLSW.Rd | 122 +++++++++++++++---------------- mvLSW-1.2/mvLSW/man/plot.mvLSW.Rd | 67 ++++++++--------- mvLSW-1.2/mvLSW/man/rmvLSW.Rd | 26 +++--- mvLSW-1.2/mvLSW/man/summary.mvLSW.Rd | 7 + mvLSW-1.2/mvLSW/man/varEWS.Rd | 38 ++++----- mvLSW-1.2/mvLSW/src/mvLSW_Cfunctions.c | 79 ++++++++++++++++---- 20 files changed, 366 insertions(+), 272 deletions(-)
Title: Everyone's Statistical Software
Description: A framework that brings together an abundance of common
statistical models found across packages into a unified interface, and
provides a common architecture for estimation and interpretation, as well
as bridging functions to absorb increasingly more models into the
collective library. Zelig allows each individual package, for each
statistical model, to be accessed by a common uniformly structured call and
set of arguments. Moreover, Zelig automates all the surrounding building
blocks of a statistical work-flow--procedures and algorithms that may be
essential to one user's application but which the original package
developer did not use in their own research and might not themselves
support. These include bootstrapping, jackknifing, and re-weighting of data.
In particular, Zelig automatically generates predicted and simulated
quantities of interest (such as relative risk ratios, average treatment
effects, first differences and predicted and expected values) to interpret
and visualize complex models.
Author: Christine Choirat [aut],
Christopher Gandrud [aut, cre],
James Honaker [aut],
Kosuke Imai [aut],
Gary King [aut],
Olivia Lau [aut],
IQSS Harvard University [cph]
Maintainer: Christopher Gandrud <zelig.zee@gmail.com>
Diff between Zelig versions 5.1-2 dated 2017-06-08 and 5.1-3 dated 2017-08-06
DESCRIPTION | 8 MD5 | 179 ++++----- NEWS.md | 24 + R/create-json.R | 8 R/model-ar.R | 69 +++ R/model-arima.R | 634 ++++++++++++++++++--------------- R/model-exp.R | 65 +++ R/model-factor-bayes.R | 127 ++++++ R/model-gamma-gee.R | 70 +++ R/model-gamma-survey.R | 62 +++ R/model-gamma.R | 65 +++ R/model-ivreg.R | 78 +++- R/model-logit-bayes.R | 79 ++++ R/model-logit-gee.R | 74 +++ R/model-logit-survey.R | 76 +++ R/model-logit.R | 70 +++ R/model-lognorm.R | 80 +++- R/model-ls.R | 57 ++ R/model-ma.R | 67 +++ R/model-mlogit-bayes.R | 87 ++++ R/model-negbinom.R | 57 ++ R/model-normal-bayes.R | 88 ++++ R/model-normal-gee.R | 71 +++ R/model-normal-survey.R | 57 ++ R/model-normal.R | 72 +++ R/model-oprobit-bayes.R | 69 +++ R/model-poisson-bayes.R | 75 +++ R/model-poisson-gee.R | 66 +++ R/model-poisson-survey.R | 57 ++ R/model-poisson.R | 61 +++ R/model-probit-bayes.R | 83 ++++ R/model-probit-gee.R | 69 +++ R/model-probit-survey.R | 91 ++++ R/model-probit.R | 56 ++ R/model-quantile.R | 93 ++++ R/model-relogit.R | 73 +++ R/model-timeseries.R | 39 +- R/model-tobit-bayes.R | 86 ++++ R/model-tobit.R | 73 +++ R/model-weibull.R | 89 ++++ R/model-zelig.R | 5 R/utils.R | 10 R/wrappers.R | 59 ++- README.md | 21 - inst/JSON/zelig5models.json | 8 inst/doc |only man/Zelig-ar-class.Rd | 80 ++++ man/Zelig-arima-class.Rd | 85 ++++ man/Zelig-exp-class.Rd | 80 ++++ man/Zelig-factor-bayes-class.Rd | 140 +++++++ man/Zelig-gamma-class.Rd | 70 +++ man/Zelig-gamma-gee-class.Rd | 86 ++++ man/Zelig-gamma-survey-class.Rd | 71 +++ man/Zelig-ivreg-class.Rd | 89 +++- man/Zelig-logit-bayes-class.Rd | 91 ++++ man/Zelig-logit-class.Rd | 84 ++++ man/Zelig-logit-gee-class.Rd | 87 ++++ man/Zelig-logit-survey-class.Rd | 86 ++++ man/Zelig-lognorm-class.Rd | 81 ++++ man/Zelig-ls-class.Rd | 71 +++ man/Zelig-ma-class.Rd | 78 ++++ man/Zelig-mlogit-bayes-class.Rd | 97 ++++- man/Zelig-negbin-class.Rd | 70 +++ man/Zelig-normal-bayes-class.Rd | 96 ++++ man/Zelig-normal-class.Rd | 86 ++++ man/Zelig-normal-gee-class.Rd | 92 ++++ man/Zelig-normal-survey-class.Rd | 70 +++ man/Zelig-oprobit-bayes-class.Rd | 79 ++++ man/Zelig-poisson-bayes-class.Rd | 87 ++++ man/Zelig-poisson-class.Rd | 76 +++ man/Zelig-poisson-gee-class.Rd | 80 ++++ man/Zelig-poisson-survey-class.Rd | 70 +++ man/Zelig-probit-bayes-class.Rd | 92 ++++ man/Zelig-probit-class.Rd | 63 +++ man/Zelig-probit-gee-class.Rd | 85 ++++ man/Zelig-probit-survey-class.Rd | 102 +++++ man/Zelig-quantile-class.Rd | 94 ++++ man/Zelig-relogit-class.Rd | 84 ++++ man/Zelig-tobit-bayes-class.Rd | 101 +++++ man/Zelig-tobit-class.Rd | 89 ++++ man/Zelig-weibull-class.Rd | 85 ++++ man/coalition2.Rd | 8 man/figures/example_plot_ci_plot-1.png |binary man/figures/example_plot_graph-1.png |binary man/vcov_rq.Rd |only man/voteincome.Rd | 6 man/zelig.Rd | 52 +- tests/testthat/test-arima.R | 19 tests/testthat/test-bayesdiagnostics.R | 3 tests/testthat/test-quantile.R | 12 tests/testthat/test-relogit.R | 12 91 files changed, 5999 insertions(+), 597 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data
processing, see <http://spark.apache.org>. This package supports connecting to
local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end,
and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut, cre],
Kevin Ushey [aut],
JJ Allaire [aut],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between sparklyr versions 0.6.0 dated 2017-07-29 and 0.6.1 dated 2017-08-06
DESCRIPTION | 6 - MD5 | 60 ++++++++++--------- NAMESPACE | 3 NEWS.md | 24 +++++++ R/connection_spark.R | 4 - R/sdf_dim.R |only R/spark_apply.R | 44 ++++++++------ R/tbl_spark.R | 5 - R/worker_apply.R | 62 ++++++++++++-------- R/worker_connect.R | 9 ++ R/worker_main.R | 18 ++++- R/yarn_cluster.R | 2 inst/extdata/versions.json | 24 +++++++ inst/java/sparklyr-1.5-2.10.jar |binary inst/java/sparklyr-1.6-2.10.jar |binary inst/java/sparklyr-2.0-2.11.jar |binary inst/java/sparklyr-2.1-2.11.jar |binary inst/java/sparklyr-2.2-2.11.jar |binary inst/livy/spark-1.5.2/tracker.scala | 11 ++- java/spark-1.5.2/backend.scala | 30 +++++++-- java/spark-1.5.2/tracker.scala | 11 ++- java/spark-1.6.0/rdd.scala | 68 +++++++++++----------- java/spark-1.6.0/rscript.scala | 3 java/spark-1.6.0/sources.scala | 89 +++++++++++++++++++---------- java/spark-1.6.0/worker.scala | 35 ++++------- man/sdf_dim.Rd |only man/spark_apply.Rd | 12 ++- tests/testthat/log4j.spark.log |only tests/testthat/test-connect.R |only tests/testthat/test-feature-transformers.R | 2 tests/testthat/test-read-write.R | 2 tests/testthat/test-serialization.R | 4 - tests/testthat/test-spark-apply.R | 10 +++ 33 files changed, 347 insertions(+), 191 deletions(-)
Title: Flexibly Reshape Data
Description: Flexibly restructure and aggregate data using
just two functions: melt and cast.
Author: Hadley Wickham [aut, cre]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between reshape versions 0.8.6 dated 2016-10-21 and 0.8.7 dated 2017-08-06
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 4 ++++ inst/CITATION | 2 +- 4 files changed, 11 insertions(+), 7 deletions(-)
Title: Update and Manipulate Rd Documentation Objects
Description: Functions for manipulation of Rd objects, including
function reprompt() for updating existing Rd
documentation for functions, methods and classes and
function rebib() for import of references from 'bibtex'
files. There is also a macro for importing 'bibtex'
references which an be used in Rd files and 'roxygen'
comments without importing this package.
Author: Georgi N. Boshnakov
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between Rdpack versions 0.4-20 dated 2016-07-26 and 0.4-21 dated 2017-08-06
DESCRIPTION | 21 +++--- MD5 | 23 +++--- NAMESPACE | 8 -- NEWS | 10 ++ build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 2 inst/doc/Inserting_bibtex_references.R |only inst/doc/Inserting_bibtex_references.Rnw | 103 ++++++++++++++++++++++++++---- inst/doc/Inserting_bibtex_references.pdf |binary man/rebib.Rd | 5 + vignettes/Inserting_bibtex_references.Rnw | 103 ++++++++++++++++++++++++++---- vignettes/Inserting_bibtex_references.tex |only vignettes/auto |only 14 files changed, 224 insertions(+), 51 deletions(-)
Title: An R 'Pandoc' Writer
Description: Contains some functions catching all messages, 'stdout' and other
useful information while evaluating R code and other helpers to return user
specified text elements (like: header, paragraph, table, image, lists etc.)
in 'pandoc' markdown or several type of R objects similarly automatically
transformed to markdown format. Also capable of exporting/converting (the
resulting) complex 'pandoc' documents to e.g. HTML, 'PDF', 'docx' or 'odt'. This
latter reporting feature is supported in brew syntax or with a custom
reference class with a smarty caching 'backend'.
Author: Gergely Daróczi <daroczig@rapporter.net>, Roman Tsegelskyi
<roman.tsegelskyi@gmail.com>
Maintainer: Gergely Daróczi <daroczig@rapporter.net>
Diff between pander versions 0.6.0 dated 2015-11-23 and 0.6.1 dated 2017-08-06
pander-0.6.0/pander/inst/examples/short-code-long-report.brew |only pander-0.6.0/pander/inst/includes/stylesheets |only pander-0.6.0/pander/man/pander.mtable.Rd |only pander-0.6.1/pander/DESCRIPTION | 24 pander-0.6.1/pander/MD5 | 333 +-- pander-0.6.1/pander/NAMESPACE | 4 pander-0.6.1/pander/NEWS | 33 pander-0.6.1/pander/R/R5.R | 4 pander-0.6.1/pander/R/RcppExports.R | 2 pander-0.6.1/pander/R/S3.R | 219 +- pander-0.6.1/pander/R/brew.R | 66 pander-0.6.1/pander/R/convert.R | 48 pander-0.6.1/pander/R/ess-functions.R | 2 pander-0.6.1/pander/R/evals.R | 14 pander-0.6.1/pander/R/graph.R | 2 pander-0.6.1/pander/R/helpers.R | 36 pander-0.6.1/pander/R/options.R | 8 pander-0.6.1/pander/R/pandoc.R | 260 +- pander-0.6.1/pander/README.md | 48 pander-0.6.1/pander/build/vignette.rds |binary pander-0.6.1/pander/inst/README.brew | 14 pander-0.6.1/pander/inst/doc/evals.Rmd | 70 pander-0.6.1/pander/inst/doc/evals.html | 739 ++++--- pander-0.6.1/pander/inst/doc/knitr.Rmd | 23 pander-0.6.1/pander/inst/doc/knitr.html | 854 ++++---- pander-0.6.1/pander/inst/doc/pander.R | 8 pander-0.6.1/pander/inst/doc/pander.Rmd | 44 pander-0.6.1/pander/inst/doc/pander.html | 717 ++++--- pander-0.6.1/pander/inst/doc/pandoc_table.Rmd | 34 pander-0.6.1/pander/inst/doc/pandoc_table.html | 997 +++++----- pander-0.6.1/pander/inst/tests/test-R5.R |only pander-0.6.1/pander/inst/tests/test-S3.R | 531 ++--- pander-0.6.1/pander/inst/tests/test-brew.R | 47 pander-0.6.1/pander/inst/tests/test-convert.R | 2 pander-0.6.1/pander/inst/tests/test-evals.R | 13 pander-0.6.1/pander/inst/tests/test-helpers.R | 26 pander-0.6.1/pander/inst/tests/test-missing.R | 8 pander-0.6.1/pander/man/Pandoc-class.Rd | 6 pander-0.6.1/pander/man/Pandoc.brew.Rd | 3 pander-0.6.1/pander/man/Pandoc.convert.Rd | 9 pander-0.6.1/pander/man/add.blank.lines.Rd | 1 pander-0.6.1/pander/man/add.lattice.grid.Rd | 1 pander-0.6.1/pander/man/add.lattice.xsubticks.Rd | 1 pander-0.6.1/pander/man/add.minor.ticks.Rd | 1 pander-0.6.1/pander/man/add.significance.stars.Rd | 5 pander-0.6.1/pander/man/brew.Rd | 3 pander-0.6.1/pander/man/cache.off.Rd | 1 pander-0.6.1/pander/man/check_caption.Rd | 1 pander-0.6.1/pander/man/check_digits.Rd | 1 pander-0.6.1/pander/man/coef_mat.Rd | 1 pander-0.6.1/pander/man/emphasize.rows.Rd | 19 pander-0.6.1/pander/man/eval.msgs.Rd | 1 pander-0.6.1/pander/man/evals.Rd | 1 pander-0.6.1/pander/man/evalsOptions.Rd | 1 pander-0.6.1/pander/man/get.alignment.Rd | 1 pander-0.6.1/pander/man/get.caption.Rd | 1 pander-0.6.1/pander/man/get.emphasize.Rd | 1 pander-0.6.1/pander/man/get.storage.Rd | 1 pander-0.6.1/pander/man/has.rownames.Rd | 1 pander-0.6.1/pander/man/multitable.Rd | 1 pander-0.6.1/pander/man/openFileInOS.Rd | 1 pander-0.6.1/pander/man/p.Rd | 15 pander-0.6.1/pander/man/pander.Arima.Rd | 1 pander-0.6.1/pander/man/pander.CrossTable.Rd | 1 pander-0.6.1/pander/man/pander.Date.Rd | 1 pander-0.6.1/pander/man/pander.NULL.Rd | 1 pander-0.6.1/pander/man/pander.POSIXct.Rd | 1 pander-0.6.1/pander/man/pander.POSIXlt.Rd | 1 pander-0.6.1/pander/man/pander.Rd | 5 pander-0.6.1/pander/man/pander.anova.Rd | 1 pander-0.6.1/pander/man/pander.aov.Rd | 1 pander-0.6.1/pander/man/pander.aovlist.Rd | 1 pander-0.6.1/pander/man/pander.call.Rd | 1 pander-0.6.1/pander/man/pander.cast_df.Rd | 1 pander-0.6.1/pander/man/pander.character.Rd | 1 pander-0.6.1/pander/man/pander.clogit.Rd | 1 pander-0.6.1/pander/man/pander.coxph.Rd | 1 pander-0.6.1/pander/man/pander.cph.Rd | 1 pander-0.6.1/pander/man/pander.data.frame.Rd | 1 pander-0.6.1/pander/man/pander.data.table.Rd |only pander-0.6.1/pander/man/pander.default.Rd | 1 pander-0.6.1/pander/man/pander.density.Rd | 1 pander-0.6.1/pander/man/pander.describe.Rd | 1 pander-0.6.1/pander/man/pander.ets.Rd |only pander-0.6.1/pander/man/pander.evals.Rd | 1 pander-0.6.1/pander/man/pander.factor.Rd | 1 pander-0.6.1/pander/man/pander.formula.Rd | 1 pander-0.6.1/pander/man/pander.ftable.Rd | 1 pander-0.6.1/pander/man/pander.function.Rd | 1 pander-0.6.1/pander/man/pander.glm.Rd | 1 pander-0.6.1/pander/man/pander.glm.rms.Rd | 1 pander-0.6.1/pander/man/pander.gtable.Rd | 1 pander-0.6.1/pander/man/pander.htest.Rd | 1 pander-0.6.1/pander/man/pander.image.Rd | 1 pander-0.6.1/pander/man/pander.irts.Rd | 1 pander-0.6.1/pander/man/pander.list.Rd | 1 pander-0.6.1/pander/man/pander.lm.Rd | 1 pander-0.6.1/pander/man/pander.lme.Rd | 1 pander-0.6.1/pander/man/pander.logical.Rd | 1 pander-0.6.1/pander/man/pander.lrm.Rd | 1 pander-0.6.1/pander/man/pander.manova.Rd | 1 pander-0.6.1/pander/man/pander.matrix.Rd | 1 pander-0.6.1/pander/man/pander.microbenchmark.Rd | 1 pander-0.6.1/pander/man/pander.name.Rd | 1 pander-0.6.1/pander/man/pander.nls.Rd | 1 pander-0.6.1/pander/man/pander.numeric.Rd | 1 pander-0.6.1/pander/man/pander.ols.Rd | 1 pander-0.6.1/pander/man/pander.orm.Rd | 1 pander-0.6.1/pander/man/pander.polr.Rd | 1 pander-0.6.1/pander/man/pander.prcomp.Rd | 1 pander-0.6.1/pander/man/pander.randomForest.Rd | 1 pander-0.6.1/pander/man/pander.rapport.Rd | 1 pander-0.6.1/pander/man/pander.rlm.Rd | 1 pander-0.6.1/pander/man/pander.sessionInfo.Rd | 1 pander-0.6.1/pander/man/pander.smooth.spline.Rd | 1 pander-0.6.1/pander/man/pander.stat.table.Rd | 1 pander-0.6.1/pander/man/pander.summary.aov.Rd | 1 pander-0.6.1/pander/man/pander.summary.aovlist.Rd | 1 pander-0.6.1/pander/man/pander.summary.glm.Rd | 1 pander-0.6.1/pander/man/pander.summary.lm.Rd | 6 pander-0.6.1/pander/man/pander.summary.lme.Rd | 1 pander-0.6.1/pander/man/pander.summary.manova.Rd | 1 pander-0.6.1/pander/man/pander.summary.nls.Rd | 1 pander-0.6.1/pander/man/pander.summary.polr.Rd | 1 pander-0.6.1/pander/man/pander.summary.prcomp.Rd | 1 pander-0.6.1/pander/man/pander.summary.rms.Rd | 1 pander-0.6.1/pander/man/pander.summary.survreg.Rd | 1 pander-0.6.1/pander/man/pander.summary.table.Rd | 1 pander-0.6.1/pander/man/pander.survdiff.Rd | 1 pander-0.6.1/pander/man/pander.survfit.Rd | 1 pander-0.6.1/pander/man/pander.survreg.Rd | 1 pander-0.6.1/pander/man/pander.table.Rd | 1 pander-0.6.1/pander/man/pander.tabular.Rd | 1 pander-0.6.1/pander/man/pander.ts.Rd | 1 pander-0.6.1/pander/man/pander.vector.Rd | 1 pander-0.6.1/pander/man/pander.zoo.Rd | 1 pander-0.6.1/pander/man/panderOptions.Rd | 3 pander-0.6.1/pander/man/pander_return.Rd | 1 pander-0.6.1/pander/man/pandoc.date.return.Rd | 3 pander-0.6.1/pander/man/pandoc.emphasis.return.Rd | 3 pander-0.6.1/pander/man/pandoc.footnote.return.Rd | 3 pander-0.6.1/pander/man/pandoc.formula.return.Rd | 3 pander-0.6.1/pander/man/pandoc.header.return.Rd | 3 pander-0.6.1/pander/man/pandoc.horizontal.rule.return.Rd | 3 pander-0.6.1/pander/man/pandoc.image.return.Rd | 3 pander-0.6.1/pander/man/pandoc.indent.Rd | 1 pander-0.6.1/pander/man/pandoc.link.return.Rd | 3 pander-0.6.1/pander/man/pandoc.list.return.Rd | 3 pander-0.6.1/pander/man/pandoc.p.return.Rd | 3 pander-0.6.1/pander/man/pandoc.strikeout.return.Rd | 3 pander-0.6.1/pander/man/pandoc.strong.return.Rd | 3 pander-0.6.1/pander/man/pandoc.table.return.Rd | 14 pander-0.6.1/pander/man/pandoc.title.return.Rd | 3 pander-0.6.1/pander/man/pandoc.verbatim.return.Rd | 7 pander-0.6.1/pander/man/redraw.recordedplot.Rd | 1 pander-0.6.1/pander/man/redrawPlot.Rd | 1 pander-0.6.1/pander/man/remove.extra.newlines.Rd | 1 pander-0.6.1/pander/man/repChar.Rd | 1 pander-0.6.1/pander/man/set.alignment.Rd | 1 pander-0.6.1/pander/man/set.caption.Rd | 1 pander-0.6.1/pander/man/splitLine.Rd | 1 pander-0.6.1/pander/man/trim.spaces.Rd | 1 pander-0.6.1/pander/man/wrap.Rd | 7 pander-0.6.1/pander/src/RcppExports.cpp | 29 pander-0.6.1/pander/vignettes/evals.Rmd | 70 pander-0.6.1/pander/vignettes/knitr.Rmd | 23 pander-0.6.1/pander/vignettes/pander.Rmd | 44 pander-0.6.1/pander/vignettes/pandoc_table.Rmd | 34 168 files changed, 3173 insertions(+), 2496 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-05 0.1.0
Title: An Extended Rao-Stirling Diversity Index to Handle Missing Data
Description: A collection of functions to compute the Rao-Stirling diversity index
(Porter and Rafols, 2009) <DOI:10.1007/s11192-008-2197-2> and its extension to
acknowledge missing data (i.e., uncategorized references) by calculating its
interval of uncertainty using mathematical optimization as proposed in Calatrava
et al. (2016) <DOI:10.1007/s11192-016-1842-4>.
The Rao-Stirling diversity index is a well-established bibliometric indicator
to measure the interdisciplinarity of scientific publications. Apart from the
obligatory dataset of publications with their respective references and a
taxonomy of disciplines that categorizes references as well as a measure of
similarity between the disciplines, the Rao-Stirling diversity index requires
a complete categorization of all references of a publication into disciplines.
Thus, it fails for a incomplete categorization; in this case, the robust
extension has to be used, which encodes the uncertainty caused by missing
bibliographic data as an uncertainty interval.
Classification / ACM - 2012: Information systems ~ Similarity measures,
Theory of computation ~ Quadratic programming, Applied computing ~ Digital
libraries and archives.
Author: María del Carmen Calatrava Moreno [aut, cre],
Thomas Auzinger [aut]
Maintainer: María del Carmen Calatrava Moreno
<mc.calatrava.moreno@gmail.com>
Diff between robustrao versions 1.0-1 dated 2016-06-05 and 1.0-2 dated 2017-08-06
DESCRIPTION | 13 +++++++------ MD5 | 28 ++++++++++++++-------------- R/call_indices.R | 2 +- inst/CITATION | 6 ++---- man/LowerIndexBound.Rd | 2 +- man/ParallelBoundIndices.Rd | 2 +- man/PruneDisciplines.Rd | 1 - man/RaoCounts.Rd | 1 - man/RaoCountsNoValidation.Rd | 1 - man/RaoProportions.Rd | 1 - man/RaoProportionsNoValidation.Rd | 1 - man/RaoStirling.Rd | 1 - man/UpperIndexBound.Rd | 1 - man/pubdata1.Rd | 3 +-- man/pubdata2.Rd | 3 +-- 15 files changed, 28 insertions(+), 38 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting including the introduced here Violin/Box/Scatter plot for a numerical variable, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, Trellis graphics and a built-in help system. A confirmatory factor analysis of multiple indicator measurement models is available, as are pedagogical routines for data simulation such as for the Central Limit Theorem. Compatible with 'RStudio' and 'knitr' including generation of R markdown instructions for interpretative output.
Author: David W. Gerbing, School of Business Administration, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 3.6.2 dated 2017-05-16 and 3.6.5 dated 2017-08-06
lessR-3.6.2/lessR/R/bx.zmain.R |only lessR-3.6.2/lessR/R/dp.zmain.R |only lessR-3.6.2/lessR/man/BoxPlot.Rd |only lessR-3.6.5/lessR/DESCRIPTION | 14 lessR-3.6.5/lessR/MD5 | 149 ++-- lessR-3.6.5/lessR/NAMESPACE | 9 lessR-3.6.5/lessR/NEWS | 59 + lessR-3.6.5/lessR/R/ANOVAz1.R | 19 lessR-3.6.5/lessR/R/BarChart.R | 146 +--- lessR-3.6.5/lessR/R/BoxPlot.R | 226 ------- lessR-3.6.5/lessR/R/Density.R | 70 -- lessR-3.6.5/lessR/R/Help.R | 34 - lessR-3.6.5/lessR/R/Histogram.R | 111 --- lessR-3.6.5/lessR/R/LineChart.R | 33 - lessR-3.6.5/lessR/R/Plot.R | 899 ++++++++++++++++++----------- lessR-3.6.5/lessR/R/Read.R | 105 +-- lessR-3.6.5/lessR/R/Regression.R | 1 lessR-3.6.5/lessR/R/SummaryStats.R | 15 lessR-3.6.5/lessR/R/bar.zlattice.R | 157 +++-- lessR-3.6.5/lessR/R/bc.data.frame.R | 14 lessR-3.6.5/lessR/R/bc.zmain.R | 147 +++- lessR-3.6.5/lessR/R/bx.R | 2 lessR-3.6.5/lessR/R/bx.zstats.R |only lessR-3.6.5/lessR/R/corScree.R | 16 lessR-3.6.5/lessR/R/cr.data.frame.R | 2 lessR-3.6.5/lessR/R/dn.zmain.R | 43 - lessR-3.6.5/lessR/R/dpmat.zmain.R | 40 - lessR-3.6.5/lessR/R/hst.stats.R | 3 lessR-3.6.5/lessR/R/hst.zmain.R | 59 + lessR-3.6.5/lessR/R/lc.zmain.R | 55 - lessR-3.6.5/lessR/R/logit.z4Pred.R | 22 lessR-3.6.5/lessR/R/param.zold.R |only lessR-3.6.5/lessR/R/pc.zmain.R | 14 lessR-3.6.5/lessR/R/plt.by.zlegend.R | 8 lessR-3.6.5/lessR/R/plt.zMD.R |only lessR-3.6.5/lessR/R/plt.zVBS.R |only lessR-3.6.5/lessR/R/plt.zadd.R | 18 lessR-3.6.5/lessR/R/plt.zbad.R | 156 ----- lessR-3.6.5/lessR/R/plt.zlattice.R | 519 +++++++++++++--- lessR-3.6.5/lessR/R/plt.zlegend.R | 8 lessR-3.6.5/lessR/R/plt.zmain.R | 335 +++++----- lessR-3.6.5/lessR/R/plt.zmat.R | 32 - lessR-3.6.5/lessR/R/plt.zpanel.r |only lessR-3.6.5/lessR/R/plt.ztxt.R | 170 +---- lessR-3.6.5/lessR/R/prob.norm.R | 11 lessR-3.6.5/lessR/R/reg.z3dnResidual.R | 4 lessR-3.6.5/lessR/R/reg.z3resfitResidual.R | 18 lessR-3.6.5/lessR/R/reg.z5Plot.R | 44 - lessR-3.6.5/lessR/R/simCLT.R | 4 lessR-3.6.5/lessR/R/ss.zdata.frame.R | 4 lessR-3.6.5/lessR/R/ss.zfactor.R | 8 lessR-3.6.5/lessR/R/ss.znumeric.R | 12 lessR-3.6.5/lessR/R/style.R | 884 +++++++++++++++++++--------- lessR-3.6.5/lessR/R/style.zshow.R |only lessR-3.6.5/lessR/R/tt.z1graph.R | 14 lessR-3.6.5/lessR/R/tt.z1group.R | 8 lessR-3.6.5/lessR/R/tt.z2graph.R | 14 lessR-3.6.5/lessR/R/tt.z2group.R | 21 lessR-3.6.5/lessR/R/ttest.R | 11 lessR-3.6.5/lessR/R/ttp2zgraph.R | 12 lessR-3.6.5/lessR/R/zzz.R | 572 ++++++++++++------ lessR-3.6.5/lessR/man/ANOVA.Rd | 2 lessR-3.6.5/lessR/man/BarChart.Rd | 140 ++-- lessR-3.6.5/lessR/man/Correlation.Rd | 4 lessR-3.6.5/lessR/man/Density.Rd | 37 - lessR-3.6.5/lessR/man/Help.Rd | 2 lessR-3.6.5/lessR/man/Histogram.Rd | 105 +-- lessR-3.6.5/lessR/man/LineChart.Rd | 47 - lessR-3.6.5/lessR/man/Logit.Rd | 2 lessR-3.6.5/lessR/man/Plot.Rd | 716 ++++++++++++----------- lessR-3.6.5/lessR/man/Read.Rd | 4 lessR-3.6.5/lessR/man/Regression.Rd | 2 lessR-3.6.5/lessR/man/Transform.Rd | 4 lessR-3.6.5/lessR/man/corCFA.Rd | 2 lessR-3.6.5/lessR/man/label.Rd | 4 lessR-3.6.5/lessR/man/prob.norm.Rd | 2 lessR-3.6.5/lessR/man/prob.znorm.Rd | 2 lessR-3.6.5/lessR/man/style.Rd | 287 ++++++--- lessR-3.6.5/lessR/man/ttestPower.Rd | 2 lessR-3.6.5/lessR/man/xW.Rd | 2 80 files changed, 3824 insertions(+), 2893 deletions(-)
Title: Fit Univariate Distributions
Description: Wrapper for computing parameters and then assigning to distribution
function families.
Author: Thomas Roh [aut, cre]
Maintainer: Thomas Roh <thmsroh@gmail.com>
Diff between fitur versions 0.3.0 dated 2017-04-29 and 0.4.0 dated 2017-08-06
DESCRIPTION | 10 +++--- MD5 | 26 +++++++++++----- NAMESPACE | 4 ++ NEWS.md | 9 +++++ R/build_dist.R | 22 -------------- R/utils.R |only build/vignette.rds |binary inst/doc/introduction.R | 36 ++++++++++++----------- inst/doc/introduction.Rmd | 36 ++++++++++++----------- inst/doc/introduction.html | 51 ++++++++++++++++++++------------- inst/doc/univariate_distributions.R |only inst/doc/univariate_distributions.Rmd |only inst/doc/univariate_distributions.html |only man/Mode.Rd |only man/fit_univariate_man.Rd |only man/gen_dist_fun.Rd | 2 - man/summarize_stats.Rd |only vignettes/univariate_distributions.Rmd |only 18 files changed, 108 insertions(+), 88 deletions(-)
Title: Bayesian Spectral Analysis Models using Gaussian Process Priors
Description: Contains functions to perform Bayesian inference
using a spectral analysis of Gaussian process priors.
Gaussian processes are represented with a Fourier series
based on cosine basis functions. Currently the package
includes parametric linear models, partial linear additive
models with/without shape restrictions, generalized linear
additive models with/without shape restrictions, and
density estimation model. To maximize computational
efficiency, the actual Markov chain Monte Carlo sampling
for each model is done using codes written in FORTRAN 90.
Author: Seongil Jo [aut, cre],
Taeryon Choi [aut],
Beomjo Park [aut, cre],
Peter J. Lenk [ctb]
Maintainer: Beomjo Park <beomjo@korea.ac.kr>
Diff between bsamGP versions 1.0 dated 2017-08-05 and 1.0.1 dated 2017-08-06
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/Makevars | 37 +++++++++++++++++++++++++++++++++++++ 3 files changed, 43 insertions(+), 6 deletions(-)