Title: Organic Mass Spectrometry
Description: Organic/biological mass spectrometry data analysis.
Author: Nathan Dodder [cre, aut, cph],
Katharine Mullen [ctb]
Maintainer: Nathan Dodder <ndodder@mail.sdsu.edu>
Diff between OrgMassSpecR versions 0.4-6 dated 2016-10-19 and 0.5-2 dated 2017-08-11
DESCRIPTION | 12 LICENSE | 2 MD5 | 44 - NAMESPACE | 5 R/ListFormula.R | 6 R/MolecularWeight.R | 4 R/PeptideSpectrum.R | 34 - R/ReadMspDirectory.R | 4 R/ReadMspFile.R | 4 R/SpectrumSimilarity.R | 149 ++++-- build/vignette.rds |binary data/example.sequence.rda |binary inst/NEWS.Rd | 42 - inst/doc/OrgMassSpecR-examples.R | 2 inst/doc/OrgMassSpecR-examples.Rmd | 35 - inst/doc/OrgMassSpecR-examples.html | 797 ++++++++++++++++++------------------ man/ListFormula.Rd | 5 man/MolecularWeight.Rd | 11 man/PeptideSpectrum.Rd | 1 man/ReadMspDirectory.Rd | 4 man/ReadMspFile.Rd | 6 man/SpectrumSimilarity.Rd | 26 - vignettes/OrgMassSpecR-examples.Rmd | 35 - 23 files changed, 679 insertions(+), 549 deletions(-)
Title: Create and Append a Data Dictionary for an R Dataset
Description: Designed to create a basic data dictionary and append to the original dataset's attributes list. The package makes use of a tidy dataset and creates a data frame that will serve as a linker that will aid in building the dictionary. The dictionary is then appended to the list of the original dataset's attributes. The user will have the option of entering variable and item descriptions by writing code or use alternate functions that will prompt the user to add these.
Author: Dania M. Rodriguez [aut, cre],
P3S Corporation [cph]
Maintainer: Dania M. Rodriguez <dmrodz@gmail.com>
Diff between dataMeta versions 0.1.0 dated 2017-04-24 and 0.1.1 dated 2017-08-11
DESCRIPTION | 14 +++++++++----- MD5 | 11 ++++++----- NEWS.md |only R/build_dict.R | 12 +++++++----- README.md | 6 ++++++ build/vignette.rds |binary inst/doc/dataMeta_Vignette.html | 10 +++++----- 7 files changed, 33 insertions(+), 20 deletions(-)
Title: Process Control and Internal Validation of Forensic STR Kits
Description: An open source platform for validation and process control.
Tools to analyze data from internal validation of forensic short tandem
repeat (STR) kits are provided. The tools are developed to provide
the necessary data to conform with guidelines for internal validation
issued by the European Network of Forensic Science Institutes (ENFSI)
DNA Working Group, and the Scientific Working Group on DNA Analysis Methods
(SWGDAM). A front-end graphical user interface is provided.
More information about each function can be found in the
respective help documentation.
Author: Oskar Hansson
Maintainer: Oskar Hansson <oskhan@ous-hf.no>
Diff between strvalidator versions 1.9.0 dated 2017-03-08 and 2.0.0 dated 2017-08-11
DESCRIPTION | 14 MD5 | 416 ++++++++++---------- NAMESPACE | 7 NEWS | 32 + R/addColor.r | 19 R/addData.r | 14 R/addData_gui.r | 61 +-- R/addDye_gui.r | 67 +-- R/addMarker.r | 13 R/addMarker_gui.r | 54 +- R/addOrder.r | 14 R/addSize.r | 14 R/addSize_gui.r | 53 +- R/auditTrail.R |only R/calculateAT.r | 73 --- R/calculateAT6.r | 6 R/calculateAT6_gui.r | 60 ++ R/calculateAT_gui.r | 117 ++--- R/calculateAllele.r | 16 R/calculateAllele_gui.r | 37 + R/calculateCapillary.r | 4 R/calculateCapillary_gui.r | 43 +- R/calculateConcordance.r | 26 - R/calculateConcordance_gui.r | 60 +- R/calculateCopies.r | 15 R/calculateCopies_gui.r | 34 + R/calculateDropout.r | 23 - R/calculateDropout_gui.r | 64 +-- R/calculateHb.r | 17 R/calculateHb_gui.r | 59 +- R/calculateHeight.r | 20 R/calculateHeight_gui.r | 60 +- R/calculateLb.r | 36 - R/calculateLb_gui.r | 64 +-- R/calculateMixture.r | 6 R/calculateMixture_gui.r | 59 ++ R/calculateOL.r | 17 R/calculateOL_gui.r | 31 + R/calculateOverlap.r | 15 R/calculateOverlap_gui.r | 36 + R/calculatePeaks.r | 15 R/calculatePeaks_gui.r | 39 + R/calculatePullup.r | 18 R/calculatePullup_gui.r | 57 +- R/calculateRatio.r | 18 R/calculateRatio_gui.r | 65 +-- R/calculateResultType.r | 18 R/calculateResultType_gui.r | 53 +- R/calculateSlope.r | 20 R/calculateSlope_gui.r | 54 +- R/calculateSpike.r | 22 - R/calculateSpike_gui.r | 45 +- R/calculateStutter.r | 17 R/calculateStutter_gui.r | 70 ++- R/checkSubset.r | 2 R/checkSubset_gui.r | 29 - R/colConvert.r | 6 R/columns.r | 17 R/columns_gui.r | 63 +-- R/combineBinsAndPanels.r | 2 R/combine_gui.r | 42 +- R/cropData_gui.r | 86 ++-- R/editData_gui.r | 119 +++-- R/export.r | 5 R/export_gui.r | 197 +++++---- R/filterProfile.r | 25 - R/filterProfile_gui.r | 68 +-- R/generateEPG.r | 4 R/generateEPG_gui.r | 45 +- R/getKit.r | 2 R/ggsave_gui.r | 130 +++--- R/globals.R | 2 R/guessProfile.r | 11 R/guessProfile_gui.r | 40 + R/heightToPeak.r | 19 R/import.r | 36 - R/import_gui.r | 242 +++++++----- R/listObjects.r | 2 R/makeKit_gui.r | 21 - R/maskAT.r | 6 R/modelDropout_gui.r | 106 +++-- R/plotAT_gui.r | 50 +- R/plotBalance_gui.r | 101 ++--- R/plotCapillary_gui.r | 56 +- R/plotContamination_gui.r | 40 + R/plotDistribution_gui.r | 90 ++-- R/plotDropout_gui.r | 82 +--- R/plotKit_gui.r | 33 - R/plotPeaks_gui.r | 48 +- R/plotPrecision_gui.r | 90 ++-- R/plotPullup_gui.r | 59 +- R/plotRatio_gui.r | 44 +- R/plotResultType_gui.r | 77 ++- R/plotSlope_gui.r | 37 + R/plotStutter_gui.r | 67 +-- R/removeArtefact.r | 16 R/removeArtefact_gui.r | 36 + R/removeSpike.r | 10 R/removeSpike_gui.r | 35 + R/saveObject.r | 10 R/scrambleAlleles.r | 8 R/slim.r | 17 R/slim_gui.r | 59 +- R/sortMarker.r | 9 R/strvalidator-package.r | 52 +- R/strvalidator.r | 801 ++++++++++++++++++++-------------------- R/tableBalance.r | 12 R/tableBalance_gui.r | 38 + R/tableCapillary.r | 4 R/tableCapillary_gui.r | 33 + R/tablePrecision.r | 4 R/tablePrecision_gui.r | 87 ++-- R/tableStutter.r | 8 R/tableStutter_gui.r | 48 +- R/trim.r | 19 R/trim_gui.r | 70 +-- README.md | 12 man/addColor.Rd | 4 man/addData_gui.Rd | 2 man/addDye_gui.Rd | 2 man/addMarker.Rd | 2 man/addMarker_gui.Rd | 2 man/addOrder.Rd | 2 man/addSize_gui.Rd | 2 man/auditTrail.Rd |only man/calculateAT.Rd | 6 man/calculateAT6.Rd | 2 man/calculateAT6_gui.Rd | 2 man/calculateAT_gui.Rd | 2 man/calculateAllele.Rd | 4 man/calculateAllele_gui.Rd | 2 man/calculateCapillary_gui.Rd | 2 man/calculateConcordance_gui.Rd | 2 man/calculateCopies.Rd | 2 man/calculateCopies_gui.Rd | 2 man/calculateDropout.Rd | 4 man/calculateDropout_gui.Rd | 2 man/calculateHb.Rd | 2 man/calculateHb_gui.Rd | 2 man/calculateHeight_gui.Rd | 2 man/calculateLb.Rd | 6 man/calculateLb_gui.Rd | 2 man/calculateMixture.Rd | 2 man/calculateMixture_gui.Rd | 2 man/calculateOL.Rd | 6 man/calculateOL_gui.Rd | 4 man/calculateOverlap.Rd | 6 man/calculateOverlap_gui.Rd | 6 man/calculatePeaks.Rd | 2 man/calculatePeaks_gui.Rd | 2 man/calculatePullup_gui.Rd | 2 man/calculateRatio_gui.Rd | 2 man/calculateResultType.Rd | 2 man/calculateResultType_gui.Rd | 2 man/calculateSlope.Rd | 4 man/calculateSlope_gui.Rd | 2 man/calculateSpike.Rd | 6 man/calculateSpike_gui.Rd | 2 man/calculateStutter.Rd | 2 man/calculateStutter_gui.Rd | 2 man/checkSubset.Rd | 2 man/checkSubset_gui.Rd | 2 man/columns_gui.Rd | 2 man/combineBinsAndPanels.Rd | 2 man/combine_gui.Rd | 2 man/cropData_gui.Rd | 6 man/editData_gui.Rd | 13 man/export.Rd | 1 man/export_gui.Rd | 10 man/filterProfile.Rd | 4 man/filterProfile_gui.Rd | 2 man/generateEPG.Rd | 4 man/generateEPG_gui.Rd | 2 man/getKit.Rd | 2 man/guessProfile.Rd | 2 man/guessProfile_gui.Rd | 2 man/heightToPeak.Rd | 9 man/import.Rd | 3 man/listObjects.Rd | 2 man/makeKit_gui.Rd | 2 man/modelDropout_gui.Rd | 14 man/plotAT_gui.Rd | 4 man/plotBalance_gui.Rd | 6 man/plotCapillary_gui.Rd | 6 man/plotContamination_gui.Rd | 4 man/plotDistribution_gui.Rd | 4 man/plotDropout_gui.Rd | 4 man/plotKit_gui.Rd | 2 man/plotPeaks_gui.Rd | 8 man/plotPrecision_gui.Rd | 4 man/plotPullup_gui.Rd | 6 man/plotRatio_gui.Rd | 4 man/plotResultType_gui.Rd | 8 man/plotSlope_gui.Rd | 4 man/plotStutter_gui.Rd | 4 man/ref1.Rd | 2 man/ref11.Rd | 2 man/ref4.Rd | 4 man/removeArtefact_gui.Rd | 2 man/removeSpike_gui.Rd | 2 man/saveObject.Rd | 2 man/scrambleAlleles.Rd | 4 man/slim.Rd | 4 man/slim_gui.Rd | 2 man/strvalidator-package.Rd | 44 +- man/tableBalance_gui.Rd | 2 man/tableCapillary_gui.Rd | 2 man/tablePrecision_gui.Rd | 2 man/tableStutter_gui.Rd | 2 man/trim_gui.Rd | 2 210 files changed, 3433 insertions(+), 2795 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- fixed effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- statistical tests and trim-and-fill method to evaluate bias in meta-analysis;
- import data from 'RevMan 5';
- prediction interval, Hartung-Knapp and Paule-Mandel method for random effects model;
- cumulative meta-analysis and leave-one-out meta-analysis;
- meta-regression (if R package 'metafor' is installed);
- generalised linear mixed models (if R packages 'metafor', 'lme4', 'numDeriv', and 'BiasedUrn' are installed).
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between meta versions 4.8-3 dated 2017-07-22 and 4.8-4 dated 2017-08-11
DESCRIPTION | 8 - MD5 | 57 ++++++------ NAMESPACE | 3 NEWS | 44 +++++++++ R/bubble.metareg.R | 13 ++ R/chkmiss.R | 2 R/chknumeric.R | 2 R/forest-internal.R | 26 ++--- R/forest.meta.R | 26 ++--- R/is.cor.R |only R/is.prop.R |only R/is.rate.R |only R/meta-internal.R | 3 R/metabias.default.R | 158 +++++---------------------------- R/metacor.R | 2 R/metacum.R | 4 R/metagen.R | 4 R/metainf.R | 4 R/metaprop.R | 4 R/metarate.R | 2 R/print.meta.R | 12 +- R/print.summary.meta.R | 29 +++++- R/radial.default.R | 74 ++++++--------- R/setchar.R | 2 R/settings.meta.R | 11 +- R/summary.meta.R | 38 +++++--- R/trimfill.default.R | 232 +++++-------------------------------------------- R/trimfill.meta.R | 118 +++++++++++++++++++++--- R/xlab.R | 4 man/forest.Rd | 6 + man/labbe.Rd | 11 +- 31 files changed, 398 insertions(+), 501 deletions(-)
Title: Client for New York Times 'APIs'
Description: Interface to Congress, Campaign Finance, Article Search, and
Geographic 'APIs' from the New York Times (<http://developer.nytimes.com/>)
and 'ProPublica' (<https://www.propublica.org/datastore/apis>). This client
covers a subset of the New York Times and 'ProPublica' 'APIs'.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rtimes versions 0.4.0 dated 2017-05-10 and 0.5.0 dated 2017-08-11
DESCRIPTION | 14 +-- MD5 | 98 +++++++++++------------ NAMESPACE | 4 NEWS.md | 22 ++++- R/as_search.R | 12 +- R/cf_candidate_details.R | 6 - R/cf_candidate_leaders.R | 5 - R/cf_candidate_new.R | 5 - R/cf_candidate_search.R | 12 +- R/cf_candidate_state.R | 5 - R/cg_billscosponsor.R | 8 + R/cg_memberappear.R | 5 - R/cg_memberbioroles.R | 6 + R/cg_memberbystatedistrict.R | 6 + R/cg_memberlist.R | 6 + R/cg_membersleaving.R | 6 + R/cg_membersponsorcompare.R | 8 + R/cg_membervotecompare.R | 8 + R/cg_membervotepositions.R | 6 + R/cg_newmembers.R | 6 + R/cg_rollcallvote.R | 14 ++- R/geo_search.R | 12 +- R/rtimes-package.R | 68 +++++++++------- R/zzz.R | 17 ++-- README.md | 62 +++++--------- build/vignette.rds |binary inst/doc/rtimes_vignette.Rmd | 170 +++++++++++++++++----------------------- inst/doc/rtimes_vignette.html | 168 ++++++++++++++++----------------------- man/as_search.Rd | 6 + man/cf_candidate_details.Rd | 9 +- man/cf_candidate_leaders.Rd | 27 ++++-- man/cf_candidate_new.Rd | 9 +- man/cf_candidate_search.Rd | 13 ++- man/cf_candidate_state.Rd | 13 ++- man/cg_billscosponsor.Rd | 24 ++++- man/cg_memberappear.Rd | 26 +++++- man/cg_memberbioroles.Rd | 24 ++++- man/cg_memberbystatedistrict.Rd | 24 ++++- man/cg_membersleaving.Rd | 24 ++++- man/cg_memberslist.Rd | 24 ++++- man/cg_membersponsorcompare.Rd | 26 +++++- man/cg_membervotecompare.Rd | 24 ++++- man/cg_membervotepositions.Rd | 24 ++++- man/cg_newmembers.Rd | 24 ++++- man/cg_rollcallvote.Rd | 26 +++++- man/geo_search.Rd | 7 - man/rtimes-package.Rd | 73 ++++++++++------- tests/testthat/test-as_search.R | 2 tools/unnamed-chunk-9-1.png |binary vignettes/rtimes_vignette.Rmd | 170 +++++++++++++++++----------------------- 50 files changed, 795 insertions(+), 563 deletions(-)
Title: Evaluate Treatment Selection Biomarkers
Description: A suite of descriptive and inferential methods designed to evaluate one or more biomarkers for their ability to guide patient treatment recommendations. Package includes functions to assess the calibration of risk models; and plot, evaluate, and compare markers. Please see the reference Janes H, Brown MD, Huang Y, et al. (2014) <doi:10.1515/ijb-2012-0052> for further details.
Author: Marshall Brown and Holly Janes
Maintainer: Marshall Brown <mdbrown@fhcrc.org>
Diff between TreatmentSelection versions 2.1.0 dated 2017-07-25 and 2.1.1 dated 2017-08-11
DESCRIPTION | 14 +++++++------- MD5 | 11 ++++++----- NEWS | 5 +++++ R/trtsel.R | 2 +- inst/example/tutorial.Rmd | 4 +++- inst/example/tutorial.html |only man/trtsel.Rd | 2 +- 7 files changed, 23 insertions(+), 15 deletions(-)
More information about TreatmentSelection at CRAN
Permanent link
Title: Exploring Machine Learning Better, Together
Description: 'OpenML.org' is an online machine learning platform where
researchers can easily download and upload data sets, share machine learning
tasks and experiments and organize them online to work and collaborate more
effectively.
We provide an R interface to the OpenML REST API in order to download and
upload data sets, tasks, flows and runs, see <http://www.openml.org/guide>
for more information.
Author: Giuseppe Casalicchio <giuseppe.casalicchio@stat.uni-muenchen.de>,
Bernd Bischl <bernd_bischl@gmx.net>,
Dominik Kirchhoff <dom.kirchhoff@gmail.com>,
Michel Lang <michellang@gmail.com>,
Benjamin Hofner <benjamin.hofner@fau.de>,
Jakob Bossek <j.bossek@gmail.com>,
Pascal Kerschke <kerschke@uni-muenster.de>,
Joaquin Vanschoren <joaquin.vanschoren@gmail.com>
Maintainer: Giuseppe Casalicchio <giuseppe.casalicchio@stat.uni-muenchen.de>
Diff between OpenML versions 1.4 dated 2017-06-22 and 1.5 dated 2017-08-11
DESCRIPTION | 6 ++-- MD5 | 45 ++++++++++++++++++++----------------- NAMESPACE | 3 ++ NEWS | 5 ++++ R/config_helpers.R | 8 +++--- R/download.R | 26 ++++++++++++--------- R/getOMLStudy.R |only R/listOMLStudies.R |only R/loadOMLConfig.R | 5 ++-- R/zzz.R | 2 - man/getOMLDataSet.Rd | 2 - man/getOMLDataSetQualities.Rd | 2 - man/getOMLFlow.Rd | 2 - man/getOMLRun.Rd | 2 - man/getOMLStudy.Rd |only man/getOMLTask.Rd | 2 - man/listOMLDataSetQualities.Rd | 1 man/listOMLDataSets.Rd | 1 man/listOMLEstimationProcedures.Rd | 1 man/listOMLEvaluationMeasures.Rd | 1 man/listOMLFlows.Rd | 2 - man/listOMLRuns.Rd | 2 - man/listOMLStudies.Rd |only man/listOMLTaskTypes.Rd | 2 - man/listOMLTasks.Rd | 1 vignettes/openml-cheatsheet.pdf |only 26 files changed, 72 insertions(+), 49 deletions(-)
Title: An R Interface to Brazilian Central Bank and Sidra APIs and the
IPEA Data
Description: Creates an R interface to the Bacen <http://api.bcb.gov.br/> and Sidra <http://api.sidra.ibge.gov.br> APIs and IPEA data <http://www.ipeadata.gov.br/Default.aspx>.
Author: Fernando Teixeira [aut, cre],
Jonatha Azevedo [aut]
Maintainer: Fernando Teixeira <fernando.teixeira@fgv.br>
Diff between ecoseries versions 0.1.3 dated 2017-05-04 and 0.1.4 dated 2017-08-11
DESCRIPTION | 10 +-- MD5 | 14 ++--- NAMESPACE | 1 R/aux_ipeadata.R | 32 +++++++----- R/series_ipeadata.R | 2 R/series_sidra.R | 128 +++++++++++++++++++++++++++---------------------- man/series_ipeadata.Rd | 2 man/series_sidra.Rd | 17 ++---- 8 files changed, 113 insertions(+), 93 deletions(-)
Title: Radiomics Image Analysis Toolbox for Grayscale Images
Description: Radiomics image analysis toolbox for grayscale 2D and 3D images. RIA calculates first-order,
gray level co-occurrence matrix, gray level run length matrix and geometry-based statistics.
Almost all calculations are done using vectorized formulas to optimize run speeds. Calculation
of several thousands of parameters only takes minutes on a single core of a conventional PC.
Author: Marton Kolossvary [aut, cre]
Maintainer: Marton Kolossvary <marton.kolossvary@cirg.hu>
Diff between RIA versions 1.1.0 dated 2017-06-08 and 1.2.0 dated 2017-08-11
RIA-1.1.0/RIA/R/dichotomize.R |only RIA-1.1.0/RIA/man/dichotomize.Rd |only RIA-1.2.0/RIA/DESCRIPTION | 8 RIA-1.2.0/RIA/MD5 | 50 +- RIA-1.2.0/RIA/NAMESPACE | 4 RIA-1.2.0/RIA/R/check_data_in.R | 4 RIA-1.2.0/RIA/R/discretize.R |only RIA-1.2.0/RIA/R/first_order.R | 18 RIA-1.2.0/RIA/R/geometry.R | 26 - RIA-1.2.0/RIA/R/glcm.R | 24 - RIA-1.2.0/RIA/R/glcm_all.R |only RIA-1.2.0/RIA/R/glcm_stat.R | 10 RIA-1.2.0/RIA/R/glrlm.R | 297 ++++++++------- RIA-1.2.0/RIA/R/glrlm_all.R |only RIA-1.2.0/RIA/R/glrlm_stat.R | 10 RIA-1.2.0/RIA/R/load_dicom.R | 4 RIA-1.2.0/RIA/inst/doc/RIA.R | 56 +- RIA-1.2.0/RIA/inst/doc/RIA.Rmd | 730 +++++++++++++++++++-------------------- RIA-1.2.0/RIA/inst/doc/RIA.html | 522 +++++++++++++++++++++++---- RIA-1.2.0/RIA/man/discretize.Rd |only RIA-1.2.0/RIA/man/first_order.Rd | 14 RIA-1.2.0/RIA/man/geometry.Rd | 22 - RIA-1.2.0/RIA/man/glcm.Rd | 18 RIA-1.2.0/RIA/man/glcm_all.Rd |only RIA-1.2.0/RIA/man/glcm_stat.Rd | 8 RIA-1.2.0/RIA/man/glrlm.Rd | 37 + RIA-1.2.0/RIA/man/glrlm_all.Rd |only RIA-1.2.0/RIA/man/glrlm_stat.Rd | 8 RIA-1.2.0/RIA/man/load_dicom.Rd | 4 RIA-1.2.0/RIA/vignettes/RIA.Rmd | 730 +++++++++++++++++++-------------------- 30 files changed, 1533 insertions(+), 1071 deletions(-)
Title: Statistical Inference for Parametric and Semiparametric Models
Based on Dependently Truncated Data
Description: Suppose that one can observe bivariate random variables (X, Y) only when X<=Y holds. Data (Xj, Yj), subject to Xj<=Yj, for all j=1,...,n, are called truncated data. For truncated data, several different approaches are implemented for statistical inference on (X, Y), when X and Y are dependent. Also included is truncated data on the number of deaths at each year (1963-1980) for Japanese male centenarians.
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between depend.truncation versions 2.7 dated 2017-07-30 and 2.8 dated 2017-08-11
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/PMLE.Clayton.Exponential.R | 9 ++++----- man/depend.truncation-package.Rd | 2 +- 4 files changed, 12 insertions(+), 13 deletions(-)
More information about depend.truncation at CRAN
Permanent link
Title: Biomarker Selection in Penalized Regression Models
Description: Provides some tools for developing and validating prediction models, estimate expected survival of patients and visualize them graphically. Most of the implemented methods are based on penalized regressions such as: the lasso (Tibshirani R (1996)), the elastic net (Zou H et al. (2005) <doi:10.1111/j.1467-9868.2005.00503.x>), the adaptive lasso (Zou H (2006) <doi:10.1198/016214506000000735>), the stability selection (Meinshausen N et al. (2010) <doi:10.1111/j.1467-9868.2010.00740.x>), some extensions of the lasso (Ternes et al. (2016) <doi:10.1002/sim.6927>), some methods for the interaction setting (Ternes N et al. (2016) <doi:10.1002/bimj.201500234>), or others. A function generating simulated survival data set is also provided.
Author: Nils Ternes [aut, cre],
Federico Rotolo [aut], Stefan Michiels [ctr]
Maintainer: Nils Ternes <nils.ternes@yahoo.com>
Diff between biospear versions 1.0.0 dated 2017-05-13 and 1.0.1 dated 2017-08-11
DESCRIPTION | 10 ++---- MD5 | 16 +++++----- R/BMsel.R | 12 +++++++ R/expSurv.R | 41 +++++++++++++------------- R/gboost.R | 1 R/predRes.R | 88 ++++++++++++++++++++++++++++----------------------------- man/BMsel.Rd | 6 +++ man/expSurv.Rd | 12 +++---- man/predRes.Rd | 18 +++++------ 9 files changed, 110 insertions(+), 94 deletions(-)
Title: Ranked Choice Voting
Description: A collection of ranked choice voting data and functions to
manipulate, run elections with, and visualize this data and others.
It can bring in raw data, transform it into a ballot you can read,
and return election results for an RCV contest.
Author: Jay Lee [aut],
Matthew Yancheff [aut, cre],
Reed College [cph]
Maintainer: Matthew Yancheff <yanchefm@reed.edu>
Diff between rcv versions 0.2.0 dated 2017-06-14 and 0.2.1 dated 2017-08-11
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++-- R/cleaning_functions.R | 2 +- R/plot_functions.R | 4 ++-- README.md | 40 +++++++++++++++++++++++++--------------- 6 files changed, 39 insertions(+), 29 deletions(-)
Title: Functional Input Validation
Description: A set of basic tools to transform functions into functions with
input validation checks, in a manner suitable for both programmatic and
interactive use.
Author: Eugene Ha [aut, cre]
Maintainer: Eugene Ha <eha@posteo.de>
Diff between valaddin versions 0.1.0 dated 2017-03-24 and 0.1.2 dated 2017-08-11
DESCRIPTION | 11 MD5 | 64 +- NAMESPACE | 6 NEWS.md | 92 +++ R/call.R | 17 R/checkers.R | 63 +- R/checklist.R | 8 R/components.R | 30 - R/firmly.R | 291 +++++++---- R/rawrd.R | 54 +- R/scope.R | 76 +-- R/utils.R | 13 R/validate.R |only README.md | 226 ++++----- build/vignette.rds |binary inst/doc/valaddin.R | 2 inst/doc/valaddin.Rmd | 19 inst/doc/valaddin.html | 962 +++++++++++++++++++++++++-------------- man/bare-type-checkers.Rd | 5 man/components.Rd | 21 man/firmly.Rd | 71 ++ man/misc-checkers.Rd | 11 man/scalar-type-checkers.Rd | 5 man/type-checkers.Rd | 19 man/validate.Rd |only tests/testthat/helper.R | 2 tests/testthat/test-checkers.R | 43 + tests/testthat/test-components.R | 45 + tests/testthat/test-firmly.R | 83 ++- tests/testthat/test-loosely.R | 103 ---- tests/testthat/test-print.R | 48 + tests/testthat/test-scope.R | 2 tests/testthat/test-validation.R | 211 +++++++- vignettes/valaddin.Rmd | 19 34 files changed, 1727 insertions(+), 895 deletions(-)
Title: A Collection of Oversampling Techniques for Class Imbalance
Problem Based on SMOTE
Description: A collection of various oversampling techniques developed from SMOTE is provided. SMOTE is a oversampling technique which synthesizes a new minority instance between a pair of one minority instance and one of its K nearest neighbor. (see <https://www.jair.org/media/953/live-953-2037-jair.pdf> for more information) Other techniques adopt this concept with other criteria in order to generate balanced dataset for class imbalance problem.
Author: Wacharasak Siriseriwan [aut, cre]
Maintainer: Wacharasak Siriseriwan <wacharasak.s@gmail.com>
Diff between smotefamily versions 1.0 dated 2016-09-08 and 1.1 dated 2017-08-11
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/DBSMOTE.R | 3 ++- R/SMOTE.R | 2 +- 4 files changed, 10 insertions(+), 9 deletions(-)
Title: Reversible-Jump MCMC Using Post-Processing
Description: Performs reversible-jump Markov chain Monte Carlo (Green, 1995)
<doi:10.2307/2337340>, specifically the restriction introduced by
Barker & Link (2013) <doi:10.1080/00031305.2013.791644>. By utilising
a 'universal parameter' space, RJMCMC is treated as a Gibbs sampling
problem. Previously-calculated posterior distributions are used to
quickly estimate posterior model probabilities. Jacobian matrices are
found using automatic differentiation.
Author: Nick Gelling [aut, cre],
Matthew R. Schofield [aut],
Richard J. Barker [aut]
Maintainer: Nick Gelling <ngelling@maths.otago.ac.nz>
Diff between rjmcmc versions 0.3.01 dated 2017-08-03 and 0.3.2 dated 2017-08-11
rjmcmc-0.3.01/rjmcmc/vignettes/framed.sty |only rjmcmc-0.3.2/rjmcmc/DESCRIPTION | 6 +++--- rjmcmc-0.3.2/rjmcmc/MD5 | 5 ++--- rjmcmc-0.3.2/rjmcmc/inst/doc/rjmcmcVig.pdf |binary 4 files changed, 5 insertions(+), 6 deletions(-)