Thu, 17 Aug 2017

New package skpr with initial version 0.35.1
Package: skpr
Title: Design of Experiments Suite: Generate and Evaluate Optimal Designs
Version: 0.35.1
Authors@R: c(person("Tyler", "Morgan-Wall", email = "tylermw@gmail.com", role = c("aut", "cre")), person("George", "Khoury", email = "george.m.khoury@gmail.com", role = c("aut")))
Description: Generates and evaluates D, I, A, Alias, E, T, and G optimal designs. Supports generation and evaluation of split/split-split/.../N-split plot designs. Includes parametric and Monte Carlo power evaluation functions, and supports calculating power for censored responses. Provides a framework to evaluate power using functions provided in other packages or written by the user. Includes a Shiny graphical user interface that displays the underlying code used to create and evaluate the design to improve ease-of-use and enhance reproducibility.
Date: 2017-08-17
Copyright: Institute for Defense Analyses
Depends: R (>= 3.0.2), shiny
License: GPL-3
LazyData: true
RoxygenNote: 6.0.1
Imports: utils, iterators, stats, nlme, lme4, Rcpp (>= 0.11.0), rintrojs, shinythemes, foreach, doParallel, survival
LinkingTo: Rcpp, RcppArmadillo (>= 0.6.0)
Suggests: testthat
URL: https://github.com/tylermorganwall/skpr
BugReports: https://github.com/tylermorganwall/skpr/issues
NeedsCompilation: yes
Packaged: 2017-08-17 20:12:51 UTC; tmorganw
Author: Tyler Morgan-Wall [aut, cre], George Khoury [aut]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Repository: CRAN
Date/Publication: 2017-08-17 23:54:11 UTC

More information about skpr at CRAN
Permanent link

Package RefManageR updated to version 0.14.20 with previous version 0.14.12 dated 2017-07-04

Title: Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management
Description: Provides tools for importing and working with bibliographic references. It greatly enhances the 'bibentry' class by providing a class 'BibEntry' which stores 'BibTeX' and 'BibLaTeX' references, supports 'UTF-8' encoding, and can be easily searched by any field, by date ranges, and by various formats for name lists (author by last names, translator by full names, etc.). Entries can be updated, combined, sorted, printed in a number of styles, and exported. 'BibTeX' and 'BibLaTeX' '.bib' files can be read into 'R' and converted to 'BibEntry' objects. Interfaces to 'NCBI Entrez', 'CrossRef', and 'Zotero' are provided for importing references and references can be created from locally stored 'PDF' files using 'Poppler'. Includes functions for citing and generating a bibliography with hyperlinks for documents prepared with 'RMarkdown' or 'RHTML'.
Author: Mathew W. McLean [aut, cre]
Maintainer: Mathew W. McLean <mathew.w.mclean@gmail.com>

Diff between RefManageR versions 0.14.12 dated 2017-07-04 and 0.14.20 dated 2017-08-17

 .Rinstignore                    |only
 DESCRIPTION                     |   12 +-
 MD5                             |   86 +++++++++----------
 NAMESPACE                       |    3 
 R/02BibOptions.R                |    8 +
 R/04InternalFunctions.R         |  139 ++++++++++++++++--------------
 R/BibEntryAddOp.R               |    5 -
 R/GetBibEntryWithDOI.R          |   16 ++-
 R/GetDOIs.R                     |   11 +-
 R/ReadCrossRef.R                |   60 ++++++++-----
 R/ReadGS.R                      |    2 
 R/ReadPDFs.R                    |    9 +-
 R/ReadPubMed.R                  |   31 ++----
 R/head.BibEntry.R               |    8 +
 R/rmdCite.R                     |  180 ++++++++++++++++++++++++----------------
 R/toBibtex.R                    |  140 ++++++++++++++++++-------------
 README.md                       |   17 ++-
 inst/CITATION                   |   11 ++
 inst/NEWS.md                    |   19 ++++
 inst/Rhtml/TestAuthorYear.Rhtml |   10 +-
 inst/Rhtml/TestHtml.Rhtml       |    7 -
 inst/doc/120_status.svg         |only
 inst/doc/TestHtml.R             |   10 --
 inst/doc/TestHtml.Rhtml         |   19 ++--
 inst/doc/TestHtml.html          |   31 ++----
 inst/doc/TestRmd.R              |    4 
 inst/doc/TestRmd.Rmd            |    5 +
 inst/doc/TestRmd.html           |   15 +--
 inst/doc/manual.pdf             |binary
 inst/doc/ropensci_footer.png    |only
 man/BibOptions.Rd               |    8 +
 man/Cite.Rd                     |    7 +
 man/GetBibEntryWithDOI.Rd       |    2 
 man/GetDOIs.Rd                  |    2 
 man/GetPubMedByID.Rd            |    2 
 man/GetPubMedRelated.Rd         |    2 
 man/LookupPubMedID.Rd           |    4 
 man/ReadCrossRef.Rd             |    5 -
 man/ReadGS.Rd                   |    2 
 man/ReadPDFs.Rd                 |    6 +
 man/ReadPubMed.Rd               |    4 
 man/head.BibEntry.Rd            |    7 +
 tests/testthat/test-methods.R   |   12 ++
 tests/testthat/test-pubmed.R    |    2 
 vignettes/TestHtml.Rhtml        |   19 ++--
 vignettes/TestRmd.Rmd           |    5 +
 46 files changed, 559 insertions(+), 388 deletions(-)

More information about RefManageR at CRAN
Permanent link

Package metacom updated to version 1.4.7 with previous version 1.4.6 dated 2017-03-29

Title: Analysis of the 'Elements of Metacommunity Structure'
Description: Functions to analyze coherence, boundary clumping, and turnover following the pattern-based metacommunity analysis of Leibold and Mikkelson 2002 <doi:10.1034/j.1600-0706.2002.970210.x>. The package also includes functions to visualize ecological networks, and to calculate modularity as a replacement to boundary clumping.
Author: Tad Dallas
Maintainer: Tad Dallas <tdallas@ucdavis.edu>

Diff between metacom versions 1.4.6 dated 2017-03-29 and 1.4.7 dated 2017-08-17

 DESCRIPTION          |   15 +++++++--------
 MD5                  |   20 +++++++++++++-------
 R/BoundaryClump.R    |   43 ++++++++++++++++++++++++-------------------
 R/Imagine.R          |    2 +-
 R/Metacommunity.R    |    4 ++--
 R/Turnover.R         |   43 +++++++++++++++++++++++--------------------
 man/BoundaryClump.Rd |    6 +++++-
 man/Turnover.Rd      |    6 +++++-
 tests                |only
 9 files changed, 80 insertions(+), 59 deletions(-)

More information about metacom at CRAN
Permanent link

Package inlmisc updated to version 0.3.2 with previous version 0.3.1 dated 2017-08-14

Title: Miscellaneous Functions for the USGS INL Project Office
Description: A collection of functions for creating high-level graphics, performing raster-based analysis, processing MODFLOW-based models, etc. Used to support packages and scripts written by researchers at the United States Geological Survey (USGS) Idaho National Laboratory (INL) Project Office.
Author: Jason C. Fisher [aut, cre]
Maintainer: Jason C. Fisher <jfisher@usgs.gov>

Diff between inlmisc versions 0.3.1 dated 2017-08-14 and 0.3.2 dated 2017-08-17

 DESCRIPTION            |    8 ++++----
 MD5                    |    8 ++++----
 NEWS.md                |    6 ++++++
 R/RecreateLibrary.R    |   43 ++++++++++++++++++++++---------------------
 man/RecreateLibrary.Rd |    7 ++++---
 5 files changed, 40 insertions(+), 32 deletions(-)

More information about inlmisc at CRAN
Permanent link

Package gamCopula updated to version 0.0-4 with previous version 0.0-3 dated 2017-08-14

Title: Generalized Additive Models for Bivariate Conditional Dependence Structures and Vine Copulas
Description: Implementation of various inference and simulation tools to apply generalized additive models to bivariate dependence structures and non-simplified vine copulas.
Author: Thomas Nagler [aut], Thibault Vatter [aut, cre]
Maintainer: Thibault Vatter <thibault.vatter@gmail.com>

Diff between gamCopula versions 0.0-3 dated 2017-08-14 and 0.0-4 dated 2017-08-17

 DESCRIPTION              |    8 ++++----
 MD5                      |   10 +++++-----
 NEWS.md                  |   12 ++++++++++++
 R/gamBiCopFit.R          |   19 ++++++++++---------
 R/gamBiCopSelect.R       |   11 +++++++++--
 man/gamCopula-package.Rd |    6 +++---
 6 files changed, 43 insertions(+), 23 deletions(-)

More information about gamCopula at CRAN
Permanent link

New package fuser with initial version 1.0.0
Package: fuser
Title: Fused Lasso for High-Dimensional Regression over Groups
Version: 1.0.0
Authors@R: c( person("Frank", "Dondelinger", email = "fdondelinger.work@gmail.com", role = c("aut", "cre")), person("Olivier", "Wilkinson", role = c("aut")) )
Description: Enables high-dimensional penalized regression across heterogeneous subgroups. Fusion penalties are used to share information about the linear parameters across subgroups. The underlying model is described in detail in Dondelinger and Mukherjee (2017) <arXiv:1611.00953>.
Depends: R (>= 3.2.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: testthat, ggplot2, knitr, rmarkdown
Imports: Matrix, irlba, Rcpp, glmnet, RSpectra
LinkingTo: Rcpp, RcppEigen
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2017-08-17 19:55:59 UTC; levendis
Author: Frank Dondelinger [aut, cre], Olivier Wilkinson [aut]
Maintainer: Frank Dondelinger <fdondelinger.work@gmail.com>
Repository: CRAN
Date/Publication: 2017-08-18 00:06:12 UTC

More information about fuser at CRAN
Permanent link

Package compareGroups updated to version 3.3 with previous version 3.2.4 dated 2017-03-14

Title: Descriptive Analysis by Groups
Description: Create data summaries for quality control, extensive reports for exploring data, as well as?publication-ready univariate or bivariate tables?in several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figures?to quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics?(mean, median, frequencies, incidences, etc.). Perform the appropriate tests?(t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data?(Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.
Author: Isaac Subirana, Joan Vila, H\'ector Sanz, Gavin Lucas, Judith Pe\~nafiel and David Gim\'enez
Maintainer: Isaac Subirana <isubirana@imim.es>

Diff between compareGroups versions 3.2.4 dated 2017-03-14 and 3.3 dated 2017-08-17

 DESCRIPTION                          |   12 -
 MD5                                  |   29 +-
 R/compare.i.R                        |    4 
 R/compareGroups.default.R            |    7 
 R/createTable.R                      |   26 ++
 R/export2html.R                      |   16 -
 R/export2md.R                        |    4 
 build/vignette.rds                   |binary
 inst/app/log                         |only
 inst/app/server.R                    |    4 
 inst/doc/changelog                   |    5 
 inst/doc/compareGroups_vignette.html |  156 +++++++--------
 man/compareGroups-internal.Rd        |    2 
 man/compareGroups-package.Rd         |    4 
 man/compareGroups.Rd                 |    4 
 man/createTable.Rd                   |  355 +++++++++++++++++------------------
 16 files changed, 338 insertions(+), 290 deletions(-)

More information about compareGroups at CRAN
Permanent link

Package SiMRiv updated to version 1.0.1 with previous version 1.0.0 dated 2017-07-27

Title: Individual-Based, Spatially-Explicit Simulation and Analysis of Multi-State Movements in River Networks, Homogeneous, and Heterogeneous Landscapes
Description: Provides functions to generate and analyze individual-based spatially-explicit simulations of multi-state movements in heterogeneous landscapes, based on "resistance" rasters. Although originally conceived and designed to simulate spatially-explicit trajectories of species constrained to linear habitats or dendritic ecological networks (e.g., river networks), the simulation algorithm is built to be highly flexible and can be applied to any (aquatic, semi-aquatic or terrestrial) organism, independently on the landscape in which it moves. Thus, the user will be able to use the package to simulate movements either in homogeneous landscapes, heterogeneous landscapes (e.g. semi-aquatic animal moving mainly along rivers but also using the matrix), or even in highly contrasted landscapes (e.g. fish in a river network). The algorithm and its input parameters are the same for all cases, so that results are comparable. Simulated trajectories can then be used as mechanistic null models to test e.g. for species site fidelity and other 'Movement Ecology' hypotheses (Nathan et al. 2008, <DOI:10.1073/pnas.0800375105>), or for other predictive purposes. The package should thus be relevant to explore a broad spectrum of ecological phenomena, such as those at the interface of animal behaviour, landscape, spatial and movement ecology, disease and invasive species spread, and population dynamics.
Author: Lorenzo Quaglietta [aut], Miguel Porto [aut, cre], Erida Gjini [ctb]
Maintainer: Miguel Porto <mpbertolo@gmail.com>

Diff between SiMRiv versions 1.0.0 dated 2017-07-27 and 1.0.1 dated 2017-08-17

 SiMRiv-1.0.0/SiMRiv/vignettes/fullpage.sty |only
 SiMRiv-1.0.1/SiMRiv/DESCRIPTION            |   26 +-
 SiMRiv-1.0.1/SiMRiv/MD5                    |   31 +--
 SiMRiv-1.0.1/SiMRiv/R/SiMRiv.r             |    9 
 SiMRiv-1.0.1/SiMRiv/R/estimation.r         |  285 +++++++++++++++++++----------
 SiMRiv-1.0.1/SiMRiv/R/internal.r           |   16 -
 SiMRiv-1.0.1/SiMRiv/build/partial.rdb      |binary
 SiMRiv-1.0.1/SiMRiv/inst/doc/SiMRiv.Rnw    |   30 +--
 SiMRiv-1.0.1/SiMRiv/inst/doc/SiMRiv.pdf    |binary
 SiMRiv-1.0.1/SiMRiv/man/SiMRiv-package.Rd  |    6 
 SiMRiv-1.0.1/SiMRiv/man/adjustModel.Rd     |   59 +++---
 SiMRiv-1.0.1/SiMRiv/man/generationPlot.Rd  |    8 
 SiMRiv-1.0.1/SiMRiv/man/simulate.Rd        |    2 
 SiMRiv-1.0.1/SiMRiv/man/species.Rd         |    3 
 SiMRiv-1.0.1/SiMRiv/man/speciesModel.Rd    |   20 +-
 SiMRiv-1.0.1/SiMRiv/src/simulate.c         |   29 +-
 SiMRiv-1.0.1/SiMRiv/vignettes/SiMRiv.Rnw   |   30 +--
 17 files changed, 342 insertions(+), 212 deletions(-)

More information about SiMRiv at CRAN
Permanent link

Package polysat updated to version 1.7-2 with previous version 1.7-1 dated 2017-07-23

Title: Tools for Polyploid Microsatellite Analysis
Description: A collection of tools to handle microsatellite data of any ploidy (and samples of mixed ploidy) where allele copy number is not known in partially heterozygous genotypes. It can import and export data in ABI 'GeneMapper', 'Structure', 'ATetra', 'Tetrasat'/'Tetra', 'GenoDive', 'SPAGeDi', 'POPDIST', 'STRand', and binary presence/absence formats. It can calculate pairwise distances between individuals using a stepwise mutation model or infinite alleles model, with or without taking ploidies and allele frequencies into account. These distances can be used for the calculation of clonal diversity statistics or used for further analysis in R. Allelic diversity statistics and Polymorphic Information Content are also available. polysat can assist the user in estimating the ploidy of samples, and it can estimate allele frequencies in populations, calculate pairwise or global differentiation statistics based on those frequencies, and export allele frequencies to 'SPAGeDi' and 'adegenet'. Functions are also included for assigning alleles to isoloci in cases where one pair of microsatellite primers amplifies alleles from two or more independently segregating isoloci. polysat is described by Clark and Jasieniuk (2011) <doi:10.1111/j.1755-0998.2011.02985.x> and Clark and Schreier (2016) <doi:10.1111/1755-0998.12639>.
Author: Lindsay V. Clark [aut, cre]
Maintainer: Lindsay V. Clark <lvclark@illinois.edu>

Diff between polysat versions 1.7-1 dated 2017-07-23 and 1.7-2 dated 2017-08-17

 DESCRIPTION                    |   12 -
 MD5                            |   28 +--
 NEWS                           |    7 
 R/population_stats.R           |    6 
 inst/doc/allopolyVignette.pdf  |binary
 inst/doc/polysattutorial.pdf   |binary
 inst/extdata/STRandExample.txt |   18 +-
 man/alleleDiversity.Rd         |  148 ++++++++++-----------
 man/catalanAlleles.Rd          |  288 ++++++++++++++++++++---------------------
 man/mergeAlleleAssignments.Rd  |  164 +++++++++++------------
 man/pld.Rd                     |  206 ++++++++++++++---------------
 man/ploidysuper-class.Rd       |  146 ++++++++++----------
 man/read.STRand.Rd             |  174 ++++++++++++------------
 man/reformatPloidies.Rd        |  224 +++++++++++++++----------------
 vignettes/STRandExample.txt    |   18 +-
 15 files changed, 725 insertions(+), 714 deletions(-)

More information about polysat at CRAN
Permanent link

New package hei with initial version 0.1.0
Package: hei
Type: Package
Title: Calculate Healthy Eating Index (HEI) Scores
Date: 2017-08-05
Version: 0.1.0
Authors@R: c(person("VP", "Nagraj", email = "vpnagraj@virginia.edu", role = c("aut")), person("Tim", "Folsom", email = "timothyjfolsom@gmail.com", role = c("aut", "cre")))
Maintainer: Tim Folsom <timothyjfolsom@gmail.com>
Description: Calculates Healthy Eating Index (HEI) scores for National Health and Nutrition Examination Survey (NHANES) data sets to facilitate analysis of demographic and dietary differences. For more information on the HEI metric, refer to Guenther et al. (2014) <doi:10.3945/jn.113.183079>.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 2.10)
Imports: nhanesA
RoxygenNote: 6.0.1.9000
Suggests: knitr, rmarkdown, testthat, dplyr, ggplot2
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-08-17 00:32:58 UTC; vpn7n
Author: VP Nagraj [aut], Tim Folsom [aut, cre]
Repository: CRAN
Date/Publication: 2017-08-17 17:34:24 UTC

More information about hei at CRAN
Permanent link

Package FuzzyLP updated to version 0.1-5 with previous version 0.1-4 dated 2017-06-25

Title: Fuzzy Linear Programming
Description: Provides methods to solve Fuzzy Linear Programming Problems with fuzzy constraints (following different approaches proposed by Verdegay, Zimmermann, Werners and Tanaka), fuzzy costs, and fuzzy technological matrix.
Author: Carlos A. Rabelo [aut, cre], Pablo J. Villacorta [ctb]
Maintainer: Carlos A. Rabelo <carabelo@gmail.com>

Diff between FuzzyLP versions 0.1-4 dated 2017-06-25 and 0.1-5 dated 2017-08-17

 DESCRIPTION               |   10 ++++++----
 MD5                       |    7 +++++--
 build                     |only
 inst/doc/FuzzyLP.pdf      |binary
 inst/doc/FuzzyLP.pdf.asis |only
 vignettes                 |only
 6 files changed, 11 insertions(+), 6 deletions(-)

More information about FuzzyLP at CRAN
Permanent link

New package esreg with initial version 0.3.0
Package: esreg
Type: Package
Title: Joint Quantile and Expected Shortfall Regression
Version: 0.3.0
Date: 2017-08-17
Authors@R: c(person('Sebastian', 'Bayer', email='sebastian.bayer@uni-konstanz.de', role=c('aut', 'cre')), person('Timo', 'Dimitriadis', role='aut'))
Description: Simultaneous modeling of the quantile and the expected shortfall of a response variable given a set of covariates, see Dimitriadis and Bayer (2017) <arXiv:1704.02213>.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: quantreg, Rcpp, stats
Suggests: GenSA
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 6.0.1
NeedsCompilation: yes
Packaged: 2017-08-17 14:35:04 UTC; bayerse
Author: Sebastian Bayer [aut, cre], Timo Dimitriadis [aut]
Maintainer: Sebastian Bayer <sebastian.bayer@uni-konstanz.de>
Repository: CRAN
Date/Publication: 2017-08-17 17:29:45 UTC

More information about esreg at CRAN
Permanent link

Package bayesDP updated to version 1.2.2 with previous version 1.2.1 dated 2017-08-01

Title: Tools for the Bayesian Discount Prior Function
Description: Functions for data augmentation using the Bayesian discount prior function for 1 arm and 2 arm clinical trials.
Author: Shawn Balcome [cre], Donnie Musgrove [aut], Tarek Haddad [aut], Christopher Jackson [ctb] (For the ppexp R code that was ported to C++.)
Maintainer: Shawn Balcome <sbalcome@mdic.org>

Diff between bayesDP versions 1.2.1 dated 2017-08-01 and 1.2.2 dated 2017-08-17

 DESCRIPTION                        |    8 
 MD5                                |   28 -
 R/RcppExports.R                    |   22 
 build/vignette.rds                 |binary
 inst/doc/bdpbinomial-vignette.R    |  142 ++---
 inst/doc/bdpbinomial-vignette.Rmd  |   27 
 inst/doc/bdpbinomial-vignette.html |  718 ++++++++++++++++----------
 inst/doc/bdpnormal-vignette.R      |  162 +++--
 inst/doc/bdpnormal-vignette.Rmd    |   20 
 inst/doc/bdpnormal-vignette.html   |  758 +++++++++++++++++----------
 inst/doc/bdpsurvival-vignette.R    |  230 ++++----
 inst/doc/bdpsurvival-vignette.Rmd  |   51 +
 inst/doc/bdpsurvival-vignette.html | 1002 ++++++++++++++++++++++---------------
 src/RcppExports.cpp                |    4 
 src/bayesDP-init.c                 |   22 
 15 files changed, 1934 insertions(+), 1260 deletions(-)

More information about bayesDP at CRAN
Permanent link

Package zipfR updated to version 0.6-10 with previous version 0.6-6 dated 2012-04-03

Title: Statistical Models for Word Frequency Distributions
Description: Statistical models and utilities for the analysis of word frequency distributions. The utilities include functions for loading, manipulating and visualizing word frequency data and vocabulary growth curves. The package also implements several statistical models for the distribution of word frequencies in a population. (The name of this package derives from the most famous word frequency distribution, Zipf's law.)
Author: Stefan Evert <stefan.evert@fau.de>, Marco Baroni <marco.baroni@unitn.it>
Maintainer: Stefan Evert <stefan.evert@fau.de>

Diff between zipfR versions 0.6-6 dated 2012-04-03 and 0.6-10 dated 2017-08-17

 zipfR-0.6-10/zipfR/DESCRIPTION                               |   32 +--
 zipfR-0.6-10/zipfR/MD5                                       |  110 +++++------
 zipfR-0.6-10/zipfR/NAMESPACE                                 |    7 
 zipfR-0.6-10/zipfR/NEWS                                      |only
 zipfR-0.6-10/zipfR/R/auto_gzfile.R                           |   10 -
 zipfR-0.6-10/zipfR/R/lnre_bootstrap.R                        |    5 
 zipfR-0.6-10/zipfR/R/read_tfl.R                              |    4 
 zipfR-0.6-10/zipfR/R/spc.R                                   |    2 
 zipfR-0.6-10/zipfR/R/write_tfl.R                             |    4 
 zipfR-0.6-10/zipfR/R/zipfR_par.R                             |    2 
 zipfR-0.6-10/zipfR/R/zipfR_plotutils.R                       |   75 +++++--
 zipfR-0.6-10/zipfR/TODO                                      |only
 zipfR-0.6-10/zipfR/build                                     |only
 zipfR-0.6-10/zipfR/data/Brown.emp.vgc.rda                    |binary
 zipfR-0.6-10/zipfR/data/Brown.spc.rda                        |binary
 zipfR-0.6-10/zipfR/data/Brown.tfl.rda                        |binary
 zipfR-0.6-10/zipfR/data/Brown100k.spc.rda                    |binary
 zipfR-0.6-10/zipfR/data/BrownAdj.emp.vgc.rda                 |binary
 zipfR-0.6-10/zipfR/data/BrownAdj.spc.rda                     |binary
 zipfR-0.6-10/zipfR/data/BrownImag.emp.vgc.rda                |binary
 zipfR-0.6-10/zipfR/data/BrownImag.spc.rda                    |binary
 zipfR-0.6-10/zipfR/data/BrownInform.emp.vgc.rda              |binary
 zipfR-0.6-10/zipfR/data/BrownInform.spc.rda                  |binary
 zipfR-0.6-10/zipfR/data/BrownNoun.emp.vgc.rda                |binary
 zipfR-0.6-10/zipfR/data/BrownNoun.spc.rda                    |binary
 zipfR-0.6-10/zipfR/data/BrownVer.emp.vgc.rda                 |binary
 zipfR-0.6-10/zipfR/data/BrownVer.spc.rda                     |binary
 zipfR-0.6-10/zipfR/data/Dickens.emp.vgc.rda                  |binary
 zipfR-0.6-10/zipfR/data/Dickens.spc.rda                      |binary
 zipfR-0.6-10/zipfR/data/DickensGreatExpectations.emp.vgc.rda |binary
 zipfR-0.6-10/zipfR/data/DickensGreatExpectations.spc.rda     |binary
 zipfR-0.6-10/zipfR/data/DickensOliverTwist.emp.vgc.rda       |binary
 zipfR-0.6-10/zipfR/data/DickensOliverTwist.spc.rda           |binary
 zipfR-0.6-10/zipfR/data/DickensOurMutualFriend.emp.vgc.rda   |binary
 zipfR-0.6-10/zipfR/data/DickensOurMutualFriend.spc.rda       |binary
 zipfR-0.6-10/zipfR/data/ItaRi.emp.vgc.rda                    |binary
 zipfR-0.6-10/zipfR/data/ItaRi.spc.rda                        |binary
 zipfR-0.6-10/zipfR/data/ItaUltra.emp.vgc.rda                 |binary
 zipfR-0.6-10/zipfR/data/ItaUltra.spc.rda                     |binary
 zipfR-0.6-10/zipfR/data/TigerNP.emp.vgc.rda                  |binary
 zipfR-0.6-10/zipfR/data/TigerNP.spc.rda                      |binary
 zipfR-0.6-10/zipfR/data/TigerNP.tfl.rda                      |binary
 zipfR-0.6-10/zipfR/data/TigerPP.emp.vgc.rda                  |binary
 zipfR-0.6-10/zipfR/data/TigerPP.spc.rda                      |binary
 zipfR-0.6-10/zipfR/data/TigerPP.tfl.rda                      |binary
 zipfR-0.6-10/zipfR/inst/CITATION                             |    2 
 zipfR-0.6-10/zipfR/inst/doc/zipfr-tutorial.R                 |only
 zipfR-0.6-10/zipfR/inst/doc/zipfr-tutorial.Rnw               |only
 zipfR-0.6-10/zipfR/inst/doc/zipfr-tutorial.pdf               |binary
 zipfR-0.6-10/zipfR/man/Tiger.Rd                              |   38 +--
 zipfR-0.6-10/zipfR/man/lnre_bootstrap.Rd                     |    7 
 zipfR-0.6-10/zipfR/man/lnre_fzm.Rd                           |    2 
 zipfR-0.6-10/zipfR/man/lnre_zm.Rd                            |    2 
 zipfR-0.6-10/zipfR/man/plot_spc.Rd                           |   27 +-
 zipfR-0.6-10/zipfR/man/read_write_tfl.Rd                     |    6 
 zipfR-0.6-10/zipfR/man/zipfR_package.Rd                      |   45 ++--
 zipfR-0.6-10/zipfR/man/zipfR_plotutils.Rd                    |   63 ++++--
 zipfR-0.6-10/zipfR/vignettes                                 |only
 zipfR-0.6-6/zipfR/CHANGES                                    |only
 zipfR-0.6-6/zipfR/inst/doc/index.html                        |only
 60 files changed, 249 insertions(+), 194 deletions(-)

More information about zipfR at CRAN
Permanent link

Package servr updated to version 0.7 with previous version 0.6 dated 2017-05-12

Title: A Simple HTTP Server to Serve Static Files or Dynamic Documents
Description: Start an HTTP server in R to serve static files, or dynamic documents that can be converted to HTML files (e.g., R Markdown) under a given directory.
Author: Yihui Xie [aut, cre], Carson Sievert [ctb], Jesse Anderson [ctb], Ramnath Vaidyanathan [ctb]
Maintainer: Yihui Xie <xie@yihui.name>

Diff between servr versions 0.6 dated 2017-05-12 and 0.7 dated 2017-08-17

 DESCRIPTION          |    8 ++++----
 MD5                  |   16 ++++++++--------
 NAMESPACE            |    1 +
 NEWS                 |   12 ++++++++++++
 R/static.R           |   23 ++++++++++++++++-------
 R/utils.R            |    6 +++++-
 README.md            |    2 +-
 man/httd.Rd          |    5 ++++-
 man/server_config.Rd |    4 ++--
 9 files changed, 53 insertions(+), 24 deletions(-)

More information about servr at CRAN
Permanent link

Package PowerTOST updated to version 1.4-6 with previous version 1.4-5 dated 2017-05-20

Title: Power and Sample Size Based on Two One-Sided t-Tests (TOST) for (Bio)Equivalence Studies
Description: Contains functions to calculate power and sample size for various study designs used for bioequivalence studies. See function known.designs() for study designs covered. Moreover the package contains functions for power and sample size based on 'expected' power in case of uncertain (estimated) variability and/or uncertain theta0. ----- Added are functions for the power and sample size for the ratio of two means with normally distributed data on the original scale (based on Fieller's confidence ('fiducial') interval). ----- Contains further functions for power and sample size calculations based on non-inferiority t-test. This is not a TOST procedure but eventually useful if the question of 'non-superiority' must be evaluated. The power and sample size calculations based on non-inferiority test may also performed via 'expected' power in case of uncertain (estimated) variability and/or uncertain theta0. ----- Contains functions power.scABEL() and sampleN.scABEL() to calculate power and sample size for the BE decision via scaled (widened) BE acceptance limits (EMA recommended) based on simulations. Contains also functions scABEL.ad() and sampleN.scABEL.ad() to iteratively adjust alpha in order to maintain the overall consumer risk in ABEL studies and adapt the sample size for the loss in power. Contains further functions power.RSABE() and sampleN.RSABE() to calculate power and sample size for the BE decision via reference scaled ABE criterion according to the FDA procedure based on simulations. Contains further functions power.NTIDFDA() and sampleN.NTIDFDA() to calculate power and sample size for the BE decision via the FDA procedure for NTID's based on simulations. Contains further functions power.HVNTID() and sampleN.HVNTID() to calculate power and sample size for the BE decision via the FDA procedure for highly variable NTID's (see FDA Dabigatran / rivaroxaban guidances) ----- Contains functions for power analysis of a sample size plan for ABE (pa.ABE()), scaled ABE (pa.scABE()) and scaled ABE for NTID's (pa.NTIDFDA()) analysing power if deviating from assumptions of the plan. ----- Contains further functions for power calculations / sample size estimation for dose proportionality studies using the Power model.
Author: Detlew Labes [aut, cre], Helmut Schuetz [aut], Benjamin Lang [aut]
Maintainer: Detlew Labes <DetlewLabes@gmx.de>

Diff between PowerTOST versions 1.4-5 dated 2017-05-20 and 1.4-6 dated 2017-08-17

 DESCRIPTION                          |    9 ++---
 MD5                                  |   60 ++++++++++++++++++-----------------
 NAMESPACE                            |    2 +
 NEWS                                 |   12 +++++++
 R/CVwRfromU.R                        |only
 R/SampleSize.R                       |    1 
 R/expSampleSize.R                    |    7 ----
 R/expSampleSize_noninf.R             |    7 ----
 R/exppower.R                         |    7 ----
 R/exppower_noninf.R                  |    7 ----
 R/power.R                            |   43 ++++++++++++++-----------
 R/power_HVNTID.R                     |    4 +-
 R/power_RSABE.R                      |    8 +++-
 R/power_RSABE_NTID.R                 |    4 +-
 R/power_scABEL1.R                    |    4 +-
 R/power_scABEL2.R                    |    4 +-
 R/power_scABEL_0.R                   |    4 +-
 R/power_scABEL_lo.R                  |    4 +-
 build/partial.rdb                    |binary
 inst/doc/Expected_Power_for_TOST.pdf |binary
 man/CVwRfromU.Rd                     |only
 man/data_2x2.Rd                      |   27 +++++++++------
 man/data_2x2x3.Rd                    |   29 +++++++++-------
 man/data_2x4x4.Rd                    |   29 +++++++++-------
 man/data_parallel.Rd                 |   38 ++++++++++++----------
 man/exppower.TOST.Rd                 |   17 +++------
 man/exppower.noninf.Rd               |   21 ++++--------
 man/expsampleN.TOST.Rd               |   36 ++++-----------------
 man/expsampleN.noninf.Rd             |   38 +++++++++++++++-------
 man/pa.NTIDFDA.Rd                    |   15 +++++++-
 man/power.noninf.Rd                  |    5 +-
 man/sampleN.noninf.Rd                |    4 +-
 32 files changed, 236 insertions(+), 210 deletions(-)

More information about PowerTOST at CRAN
Permanent link

Package opencpu updated to version 2.0.4 with previous version 2.0.3 dated 2017-06-25

Title: Producing and Reproducing Results
Description: A system for embedded scientific computing and reproducible research with R. The OpenCPU server exposes a simple but powerful HTTP api for RPC and data interchange with R. This provides a reliable and scalable foundation for statistical services or building R web applications. The OpenCPU server runs either as a single-user development server within the interactive R session, or as a multi-user Linux stack based on Apache2. The entire system is fully open source and permissively licensed. The OpenCPU website has detailed documentation and example apps.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between opencpu versions 2.0.3 dated 2017-06-25 and 2.0.4 dated 2017-08-17

 DESCRIPTION                |    6 +++---
 MD5                        |   26 +++++++++++++-------------
 NEWS                       |   10 ++++++++++
 R/config.R                 |    6 ++++--
 R/email.R                  |    4 ++--
 R/httpget_webhook.R        |    4 ++--
 R/log.R                    |    4 +++-
 R/request.R                |    4 ++--
 R/serve.R                  |   23 ++++++++---------------
 R/start.R                  |   41 ++++++++++++++++++++++++++++-------------
 R/utils.R                  |    6 ++++++
 build/vignette.rds         |binary
 inst/config/defaults.conf  |    3 ++-
 inst/doc/opencpu-paper.pdf |binary
 14 files changed, 83 insertions(+), 54 deletions(-)

More information about opencpu at CRAN
Permanent link

Package mixOmics updated to version 6.2.0 with previous version 6.1.3 dated 2017-05-11

Title: Omics Data Integration Project
Description: Multivariate methods are well suited to large omics data sets where the number of variables (e.g. genes, proteins, metabolites) is much larger than the number of samples (patients, cells, mice). They have the appealing properties of reducing the dimension of the data by using instrumental variables (components), which are defined as combinations of all variables. Those components are then used to produce useful graphical outputs that enable better understanding of the relationships and correlation structures between the different data sets that are integrated. mixOmics offers a wide range of multivariate methods for the exploration and integration of biological datasets with a particular focus on variable selection. The package proposes several sparse multivariate models we have developed to identify the key variables that are highly correlated, and/or explain the biological outcome of interest. The data that can be analysed with mixOmics may come from high throughput sequencing technologies, such as omics data (transcriptomics, metabolomics, proteomics, metagenomics etc) but also beyond the realm of omics (e.g. spectral imaging). The methods implemented in mixOmics can also handle missing values without having to delete entire rows with missing data. A non exhaustive list of methods include variants of generalised Canonical Correlation Analysis, sparse Partial Least Squares and sparse Discriminant Analysis. Recently we implemented integrative methods to combine multiple data sets: N-integration with variants of Generalised Canonical Correlation Analysis and P-integration with variants of multi-group Partial Least Squares.
Author: Kim-Anh Le Cao, Florian Rohart, Ignacio Gonzalez, Sebastien Dejean with key contributors Benoit Gautier, Francois Bartolo and contributions from Pierre Monget, Jeff Coquery, FangZou Yao, Benoit Liquet.
Maintainer: Kim-Anh Le Cao <kimanh.lecao@unimelb.edu.au>

Diff between mixOmics versions 6.1.3 dated 2017-05-11 and 6.2.0 dated 2017-08-17

 DESCRIPTION                     |    8 -
 MD5                             |  207 ++++++++++++++++++++--------------------
 NEWS                            |   18 +++
 R/AUC_ROC.R                     |   36 +++++-
 R/LOGOCV.R                      |   24 +++-
 R/internal_mint.block.R         |    2 
 R/internal_mint.block_helpers.R |    6 -
 R/internal_predict.DA.R         |    1 
 R/internal_wrapper.mint.R       |   30 +++++
 R/perf.R                        |   24 +++-
 R/perf.diablo.R                 |   48 ++++++++-
 R/perf.mint.splsda.R            |   27 ++++-
 R/plotIndiv.mint.R              |    2 
 R/plotIndiv.sgcca.R             |    3 
 R/plotVar.R                     |   12 +-
 R/pls.R                         |    4 
 R/plsda.R                       |    4 
 R/spls.R                        |    4 
 R/splsda.R                      |    4 
 R/t.test.process.R              |only
 R/tune.R                        |    9 -
 R/tune.block.splsda.R           |   27 ++++-
 R/tune.mint.splsda.R            |   24 +++-
 R/tune.multilevel.R             |    3 
 R/tune.splsda.R                 |   29 -----
 man/Koren.16S.Rd                |    4 
 man/auroc.Rd                    |   11 +-
 man/background.predict.Rd       |    8 -
 man/block.pls.Rd                |    7 -
 man/block.plsda.Rd              |   15 +-
 man/block.spls.Rd               |    7 -
 man/block.splsda.Rd             |   16 +--
 man/breast.TCGA.Rd              |    2 
 man/breast.tumors.Rd            |    2 
 man/cim.Rd                      |    2 
 man/cimDiablo.Rd                |    3 
 man/circosPlot.Rd               |    3 
 man/colors.Rd                   |    2 
 man/diverse.16S.Rd              |    4 
 man/estim.regul.Rd              |    2 
 man/explained_variance.Rd       |    2 
 man/get.confusion_matrix.Rd     |    5 
 man/image.estim.regul.Rd        |    2 
 man/image.tune.rcc.Rd           |    2 
 man/imgCor.Rd                   |    2 
 man/ipca.Rd                     |    2 
 man/linnerud.Rd                 |    2 
 man/liver.toxicity.Rd           |    2 
 man/logratio.transfo.Rd         |    2 
 man/mat.rank.Rd                 |    2 
 man/mint.block.pls.Rd           |    6 -
 man/mint.block.plsda.Rd         |    8 -
 man/mint.block.spls.Rd          |    6 -
 man/mint.block.splsda.Rd        |    7 -
 man/mint.pca.Rd                 |    2 
 man/mint.pls.Rd                 |    6 -
 man/mint.plsda.Rd               |    9 -
 man/mint.spls.Rd                |    6 -
 man/mint.splsda.Rd              |    9 -
 man/mixOmics.Rd                 |   52 +++++++---
 man/multidrug.Rd                |    2 
 man/nearZeroVar.Rd              |    2 
 man/network.Rd                  |   14 +-
 man/nipals.Rd                   |    2 
 man/nutrimouse.Rd               |    2 
 man/pca.Rd                      |    6 -
 man/pcatune.Rd                  |    2 
 man/perf.Rd                     |   93 ++++++++++++++---
 man/plot.perf.Rd                |   13 ++
 man/plot.rcc.Rd                 |    2 
 man/plot.tune.Rd                |    2 
 man/plotArrow.Rd                |    4 
 man/plotContrib.Rd              |    2 
 man/plotDiablo.Rd               |    2 
 man/plotIndiv.Rd                |    2 
 man/plotLoadings.Rd             |    2 
 man/plotVar.Rd                  |    8 -
 man/pls.Rd                      |   19 ++-
 man/plsda.Rd                    |   12 +-
 man/predict.Rd                  |   20 ++-
 man/print.methods.Rd            |    2 
 man/rcc.Rd                      |    2 
 man/selectVar.Rd                |    2 
 man/sipca.Rd                    |    2 
 man/spca.Rd                     |    2 
 man/spls.Rd                     |   19 ++-
 man/splsda.Rd                   |   13 +-
 man/srbct.Rd                    |    2 
 man/stemcells.Rd                |    2 
 man/study_split.Rd              |    2 
 man/summary.Rd                  |    2 
 man/tune.Rd                     |   46 +++++++-
 man/tune.block.splsda.Rd        |   68 +++----------
 man/tune.mint.splsda.Rd         |   38 ++++---
 man/tune.multilevel.Rd          |   15 +-
 man/tune.pca.Rd                 |    2 
 man/tune.rcc.Rd                 |    2 
 man/tune.splsda.Rd              |   52 ++--------
 man/vac18.Rd                    |    2 
 man/vac18.simulated.Rd          |    2 
 man/vip.Rd                      |    2 
 man/withinVariation.Rd          |    2 
 man/wrapper.rgcca.Rd            |    2 
 man/wrapper.sgcca.Rd            |    5 
 man/yeast.Rd                    |    2 
 105 files changed, 805 insertions(+), 474 deletions(-)

More information about mixOmics at CRAN
Permanent link

Package leaflet.minicharts updated to version 0.5.1 with previous version 0.5.0 dated 2017-07-10

Title: Mini Charts for Interactive Maps
Description: Add and modify small charts on an interactive map created with package 'leaflet'. These charts can be used to represent at same time multiple variables on a single map.
Author: Francois Guillem [aut, cre], Jalal-Edine ZAWAM [ctb], RTE [cph]
Maintainer: Francois Guillem <francois.guillem@rte-france.com>

Diff between leaflet.minicharts versions 0.5.0 dated 2017-07-10 and 0.5.1 dated 2017-08-17

 DESCRIPTION                    |    6 +++---
 MD5                            |    8 ++++----
 NEWS                           |    5 +++++
 inst/doc/introduction.html     |   28 ++++++++++++++--------------
 inst/leaflet.minicharts.min.js |   22 +++++++++++-----------
 5 files changed, 37 insertions(+), 32 deletions(-)

More information about leaflet.minicharts at CRAN
Permanent link

Package ecoengine updated to version 1.11.0 with previous version 1.10.0 dated 2016-05-24

Title: Programmatic Interface to the Web Service Methods Provided by UC Berkeley's Natural History Data
Description: The ecoengine ('ecoengine'; <https://ecoengine.berkeley.edu/>). provides access to more than 5 million georeferenced specimen records from the University of California, Berkeley's Natural History Museums.
Author: Karthik Ram [aut, cre]
Maintainer: Karthik Ram <karthik.ram@gmail.com>

Diff between ecoengine versions 1.10.0 dated 2016-05-24 and 1.11.0 dated 2017-08-17

 ecoengine-1.10.0/ecoengine/inst/Using_ecoengine_cache |only
 ecoengine-1.10.0/ecoengine/inst/cache                 |only
 ecoengine-1.11.0/ecoengine/DESCRIPTION                |   18 
 ecoengine-1.11.0/ecoengine/MD5                        |  229 --
 ecoengine-1.11.0/ecoengine/NAMESPACE                  |    1 
 ecoengine-1.11.0/ecoengine/NEWS                       |    5 
 ecoengine-1.11.0/ecoengine/R/ee_checklists.R          |    2 
 ecoengine-1.11.0/ecoengine/R/ee_observations.R        |    8 
 ecoengine-1.11.0/ecoengine/R/ee_photos.R              |    6 
 ecoengine-1.11.0/ecoengine/README.md                  |   33 
 ecoengine-1.11.0/ecoengine/inst/Using_ecoengine.Rmd   |    6 
 ecoengine-1.11.0/ecoengine/inst/Using_ecoengine.html  |only
 ecoengine-1.11.0/ecoengine/inst/Using_ecoengine.md    | 1544 +++++++++---------
 ecoengine-1.11.0/ecoengine/man/california_counties.Rd |    1 
 ecoengine-1.11.0/ecoengine/man/checklist_details.Rd   |    1 
 ecoengine-1.11.0/ecoengine/man/ecoengine.Rd           |    1 
 ecoengine-1.11.0/ecoengine/man/ee_about.Rd            |    1 
 ecoengine-1.11.0/ecoengine/man/ee_cbind.Rd            |    1 
 ecoengine-1.11.0/ecoengine/man/ee_checklists.Rd       |    3 
 ecoengine-1.11.0/ecoengine/man/ee_footprints.Rd       |    1 
 ecoengine-1.11.0/ecoengine/man/ee_observations.Rd     |    3 
 ecoengine-1.11.0/ecoengine/man/ee_pages.Rd            |    1 
 ecoengine-1.11.0/ecoengine/man/ee_paginator.Rd        |    1 
 ecoengine-1.11.0/ecoengine/man/ee_photos.Rd           |    3 
 ecoengine-1.11.0/ecoengine/man/ee_search.Rd           |    1 
 ecoengine-1.11.0/ecoengine/man/ee_search_obs.Rd       |    1 
 ecoengine-1.11.0/ecoengine/man/ee_sources.Rd          |    1 
 ecoengine-1.11.0/ecoengine/man/full_sensor_list.Rd    |    1 
 ecoengine-1.11.0/ecoengine/man/print.ecoengine.Rd     |    1 
 ecoengine-1.11.0/ecoengine/man/view_photos.Rd         |    1 
 30 files changed, 869 insertions(+), 1006 deletions(-)

More information about ecoengine at CRAN
Permanent link

Package multigraph updated to version 0.71 with previous version 0.60 dated 2017-05-04

Title: Plot and Manipulate Multigraphs
Description: Functions to plot and manipulate multigraphs, signed, weighted multigraphs, and bipartite graphs with different layout options.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>

Diff between multigraph versions 0.60 dated 2017-05-04 and 0.71 dated 2017-08-17

 DESCRIPTION               |   12 -
 MD5                       |   26 ++--
 R/bmgraph.R               |  149 +++++++++++++++---------
 R/frcd.R                  |   21 +--
 R/mbnd.R                  |  138 ++++++++++++++--------
 R/multigraph.R            |  282 ++++++++++++++++++++++++++++++++++------------
 R/nrm.R                   |    2 
 R/stsm.R                  |   83 +++++++++----
 man/bmgraph.Rd            |   51 +++++---
 man/conc.Rd               |   13 +-
 man/frcd.Rd               |   13 +-
 man/multigraph-package.Rd |    6 
 man/multigraph.Rd         |   42 +++++-
 man/stsm.Rd               |   13 +-
 14 files changed, 586 insertions(+), 265 deletions(-)

More information about multigraph at CRAN
Permanent link

Package wpp2017 updated to version 1.1-0 with previous version 1.0-1 dated 2017-06-29

Title: World Population Prospects 2017
Description: Provides data from the United Nation's World Population Prospects 2017.
Author: Hana Sevcikova
Maintainer: Hana Sevcikova <hanas@uw.edu>

Diff between wpp2017 versions 1.0-1 dated 2017-06-29 and 1.1-0 dated 2017-08-17

 ChangeLog              |    4 
 DESCRIPTION            |    8 
 MD5                    |   12 
 data/mxF.txt           |10604 ++++++++++++++++++++++++-------------------------
 data/mxM.txt           |10604 ++++++++++++++++++++++++-------------------------
 man/ASMR.Rd            |    8 
 man/wpp2017-package.Rd |    4 
 7 files changed, 10627 insertions(+), 10617 deletions(-)

More information about wpp2017 at CRAN
Permanent link

Package RcppArmadillo updated to version 0.7.960.1.0 with previous version 0.7.900.2.0 dated 2017-06-04

Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the header files from the templated 'Armadillo' library. Thus users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that Armadillo requires a fairly recent compiler; for the g++ family at least version 4.6.* is required.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates and Binxiang Ni
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppArmadillo versions 0.7.900.2.0 dated 2017-06-04 and 0.7.960.1.0 dated 2017-08-17

 .aspell                                                          |only
 ChangeLog                                                        |  163 +
 DESCRIPTION                                                      |   14 
 MD5                                                              |  129 -
 NAMESPACE                                                        |    3 
 R/SciPy2R.R                                                      |only
 R/unit.test.R                                                    |   14 
 build/vignette.rds                                               |binary
 configure                                                        |   28 
 configure.ac                                                     |   10 
 inst/AUTHORS                                                     |only
 inst/COPYRIGHTS                                                  |only
 inst/NEWS.Rd                                                     |   57 
 inst/doc/RcppArmadillo-intro.pdf                                 |binary
 inst/doc/RcppArmadillo-unitTests.pdf                             |binary
 inst/include/RcppArmadilloAs.h                                   |  518 ++++
 inst/include/RcppArmadilloConfig.h                               |    8 
 inst/include/RcppArmadilloWrap.h                                 |   25 
 inst/include/armadillo                                           |    3 
 inst/include/armadillo_bits/Cube_bones.hpp                       |   21 
 inst/include/armadillo_bits/Cube_meat.hpp                        |   77 
 inst/include/armadillo_bits/Mat_bones.hpp                        |    2 
 inst/include/armadillo_bits/Mat_meat.hpp                         |    2 
 inst/include/armadillo_bits/SpMat_meat.hpp                       |    3 
 inst/include/armadillo_bits/arma_config.hpp                      |    7 
 inst/include/armadillo_bits/arma_rng.hpp                         |  127 +
 inst/include/armadillo_bits/arma_version.hpp                     |    6 
 inst/include/armadillo_bits/auxlib_meat.hpp                      |    1 
 inst/include/armadillo_bits/compiler_setup.hpp                   |   29 
 inst/include/armadillo_bits/config.hpp                           |    8 
 inst/include/armadillo_bits/config.hpp.cmake                     |    8 
 inst/include/armadillo_bits/debug.hpp                            |    1 
 inst/include/armadillo_bits/eglue_core_meat.hpp                  |   53 
 inst/include/armadillo_bits/eop_core_meat.hpp                    |   53 
 inst/include/armadillo_bits/fn_accu.hpp                          |  402 ++-
 inst/include/armadillo_bits/fn_det.hpp                           |    2 
 inst/include/armadillo_bits/fn_inv.hpp                           |   10 
 inst/include/armadillo_bits/fn_misc.hpp                          |    2 
 inst/include/armadillo_bits/fn_reshape.hpp                       |   42 
 inst/include/armadillo_bits/fn_solve.hpp                         |    8 
 inst/include/armadillo_bits/fn_sort.hpp                          |    4 
 inst/include/armadillo_bits/fn_sort_index.hpp                    |    4 
 inst/include/armadillo_bits/fn_strans.hpp                        |   15 
 inst/include/armadillo_bits/fn_trans.hpp                         |   28 
 inst/include/armadillo_bits/fn_trimat.hpp                        |   70 
 inst/include/armadillo_bits/glue_atan2_meat.hpp                  |   87 
 inst/include/armadillo_bits/gmm_diag_bones.hpp                   |   72 
 inst/include/armadillo_bits/gmm_diag_meat.hpp                    | 1112 +++++++---
 inst/include/armadillo_bits/gmm_full_bones.hpp                   |only
 inst/include/armadillo_bits/gmm_full_meat.hpp                    |only
 inst/include/armadillo_bits/gmm_misc_bones.hpp                   |   72 
 inst/include/armadillo_bits/gmm_misc_meat.hpp                    |  128 -
 inst/include/armadillo_bits/mp_misc.hpp                          |only
 inst/include/armadillo_bits/newarp_GenEigsSolver_meat.hpp        |    5 
 inst/include/armadillo_bits/newarp_UpperHessenbergEigen_meat.hpp |    9 
 inst/include/armadillo_bits/op_sum_bones.hpp                     |    6 
 inst/include/armadillo_bits/op_sum_meat.hpp                      |  193 +
 inst/include/armadillo_bits/op_trimat_bones.hpp                  |   26 
 inst/include/armadillo_bits/op_trimat_meat.hpp                   |  182 +
 inst/include/armadillo_bits/operator_cube_minus.hpp              |   16 
 inst/include/armadillo_bits/operator_minus.hpp                   |   14 
 inst/include/armadillo_bits/subview_meat.hpp                     |    2 
 inst/unitTests/cpp/any_as_vec.cpp                                |only
 inst/unitTests/cpp/armadillo.cpp                                 |    6 
 inst/unitTests/cpp/colrow_as_vec.cpp                             |only
 inst/unitTests/cpp/sparse.cpp                                    |    5 
 inst/unitTests/runit.RcppArmadillo.R                             |   13 
 inst/unitTests/runit.scipy2r.R                                   |only
 inst/unitTests/runit.sparse.R                                    |   18 
 inst/unitTests/runit.sparseConversion.R                          |only
 tests/doRUnit.R                                                  |   50 
 vignettes/RcppArmadillo-sparseMatrix.Rnw                         |only
 72 files changed, 3006 insertions(+), 967 deletions(-)

More information about RcppArmadillo at CRAN
Permanent link

New package drtmle with initial version 1.0.0
Package: drtmle
Title: Doubly-Robust Nonparametric Estimation and Inference
Version: 1.0.0
Authors@R: person("David", "Benkeser", email = "benkeser@emory.edu", role = c("aut", "cre","cph"))
Description: Targeted minimum loss-based estimators of counterfactual means and causal effects that are doubly-robust with respect both to consistency and asymptotic normality (van der Laan (2014), <doi:10.1515/ijb-2012-0038>).
Depends: R (>= 3.2.0)
Imports: SuperLearner, plyr, np, foreach
Suggests: testthat, knitr, rmarkdown, gam, quadprog, nloptr, doParallel
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-08-16 21:51:38 UTC; benkeser
Author: David Benkeser [aut, cre, cph]
Maintainer: David Benkeser <benkeser@emory.edu>
Repository: CRAN
Date/Publication: 2017-08-17 12:58:18 UTC

More information about drtmle at CRAN
Permanent link

Package wru updated to version 0.1-6 with previous version 0.1-5 dated 2017-06-08

Title: Who are You? Bayesian Prediction of Racial Category Using Surname and Geolocation
Description: Predicts individual race/ethnicity using surname, geolocation, and other attributes, such as gender and age. The method utilizes the Bayes' Rule to compute the posterior probability of each racial category for any given individual. The package implements methods described in Imai and Khanna (2015) "Improving Ecological Inference by Predicting Individual Ethnicity from Voter Registration Records" <DOI:10.1093/pan/mpw001>.
Author: Kabir Khanna [aut, cre], Kosuke Imai [aut, cre], Hubert Jin [ctb]
Maintainer: Kabir Khanna <kkhanna@princeton.edu>

Diff between wru versions 0.1-5 dated 2017-06-08 and 0.1-6 dated 2017-08-17

 wru-0.1-5/wru/R/State.FIPS.R          |only
 wru-0.1-5/wru/R/pid.R                 |only
 wru-0.1-5/wru/man/State.FIPS.Rd       |only
 wru-0.1-5/wru/man/pid.Rd              |only
 wru-0.1-5/wru/man/surnames.Rd         |only
 wru-0.1-6/wru/ChangeLog               |    1 
 wru-0.1-6/wru/DESCRIPTION             |   20 ++---
 wru-0.1-6/wru/MD5                     |   42 +++++------
 wru-0.1-6/wru/R/census_geo_api.R      |   42 ++++++-----
 wru-0.1-6/wru/R/census_helper.R       |  126 ++++++++++++++++++----------------
 wru-0.1-6/wru/R/get_census_data.R     |   37 +++++----
 wru-0.1-6/wru/R/merge_surnames.R      |    3 
 wru-0.1-6/wru/R/predict_race.R        |   56 +++++++++------
 wru-0.1-6/wru/R/surnames2010.R        |    4 -
 wru-0.1-6/wru/R/voters.R              |    1 
 wru-0.1-6/wru/README.md               |   75 +++++++++++---------
 wru-0.1-6/wru/data/datalist           |    2 
 wru-0.1-6/wru/data/surnames2010.RData |binary
 wru-0.1-6/wru/data/voters.RData       |binary
 wru-0.1-6/wru/man/census_geo_api.Rd   |    6 -
 wru-0.1-6/wru/man/census_helper.Rd    |    7 +
 wru-0.1-6/wru/man/get_census_data.Rd  |    7 +
 wru-0.1-6/wru/man/predict_race.Rd     |   21 +++--
 wru-0.1-6/wru/man/surnames2010.Rd     |only
 wru-0.1-6/wru/man/voters.Rd           |    1 
 25 files changed, 250 insertions(+), 201 deletions(-)

More information about wru at CRAN
Permanent link

Package textmineR updated to version 2.0.6 with previous version 2.0.5 dated 2017-04-07

Title: Functions for Text Mining and Topic Modeling
Description: An aid for text mining in R, with a syntax that should be familiar to experienced R users. Provides a wrapper for several topic models that take similarly-formatted input and give similarly-formatted output. Has additional functionality for analyzing and diagnostics for topic models.
Author: Thomas Jones [aut, cre], William Doane [ctb]
Maintainer: Thomas Jones <jones.thos.w@gmail.com>

Diff between textmineR versions 2.0.5 dated 2017-04-07 and 2.0.6 dated 2017-08-17

 textmineR-2.0.5/textmineR/src/textmineR_init.cpp |only
 textmineR-2.0.6/textmineR/DESCRIPTION            |   15 ++++++-----
 textmineR-2.0.6/textmineR/MD5                    |   13 ++++-----
 textmineR-2.0.6/textmineR/NAMESPACE              |    2 -
 textmineR-2.0.6/textmineR/R/CreateTcm.R          |    8 +++---
 textmineR-2.0.6/textmineR/R/RcppExports.R        |   14 +++++-----
 textmineR-2.0.6/textmineR/R/TmParallelApply.R    |    1 
 textmineR-2.0.6/textmineR/src/RcppExports.cpp    |   30 +++++++++++++++++------
 8 files changed, 50 insertions(+), 33 deletions(-)

More information about textmineR at CRAN
Permanent link

Package outbreaker updated to version 1.1-8 with previous version 1.1-7 dated 2015-12-07

Title: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
Description: Bayesian reconstruction of disease outbreaks using epidemiological and genetic information.
Author: Thibaut Jombart <thibautjombart@gmail.com>, Anne Cori, Joel Hellewell
Maintainer: Thibaut Jombart <thibautjombart@gmail.com>

Diff between outbreaker versions 1.1-7 dated 2015-12-07 and 1.1-8 dated 2017-08-17

 DESCRIPTION                       |   11 +++++------
 MD5                               |   28 +++++++++++++++-------------
 NAMESPACE                         |    2 +-
 R/package.R                       |    2 +-
 R/simOutbreak.R                   |    7 +++++--
 cleanup                           |only
 man/get.mu.Rd                     |    1 -
 man/outbreaker.Rd                 |   14 ++++++++------
 man/outbreaker.package.Rd         |    1 -
 man/plot.Rd                       |    7 ++++---
 man/repro.Rd                      |    5 +++--
 man/selectChains.Rd               |    1 -
 man/simOutbreak.Rd                |   21 ++++++++++++++-------
 man/simulated-outbreak-dataset.Rd |    3 +--
 man/tTree.Rd                      |   12 +++++++-----
 src/outbreaker_init.c             |only
 16 files changed, 64 insertions(+), 51 deletions(-)

More information about outbreaker at CRAN
Permanent link

New package CompDist with initial version 1.0
Package: CompDist
Type: Package
Title: Multisection Composite Distributions
Version: 1.0
Author: Martin Wiegand and Saralees Nadarajah
Date: 2017-08-16
Maintainer: Saralees Nadarajah <Saralees.Nadarajah@manchester.ac.uk>
Depends: R (>= 3.3.0), numDeriv
Imports: fExtremes, actuar, VGAM, rmutil, PearsonDS
Description: Computes density function, cumulative distribution function, quantile function and random numbers for a multisection composite distribution specified by the user. Also fits the user specified distribution to a given data set. More details of the package can be found in the following paper submitted to the R journal Wiegand M and Nadarajah S (2017) CompDist: Multisection composite distributions.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2017-08-17 11:25:55 UTC; mbbsssn2
Repository: CRAN
Date/Publication: 2017-08-17 11:38:03 UTC

More information about CompDist at CRAN
Permanent link

New package sim1000G with initial version 1.3
Package: sim1000G
Type: Package
Title: Genotype Simulations for Rare or Common Variants Using Haplotypes from 1000 Genomes
Version: 1.3
Date: 2017-08-08
Author: Apostolos Dimitromanolakis <apostolis@live.ca>, Jingxiong Xu <jingxiong.xu@mail.utoronto.ca>, Agnieszka Krol <krol@lunenfeld.ca>, Laurent Briollais <laurent@lunenfeld.ca>
Maintainer: Apostolos Dimitromanolakis <apostolis@live.ca>
Description: Generates realistic simulated genetic data in families or unrelated individuals.
License: GPL (>= 2)
Depends: R (>= 2.15.2), stats, hapsim, MASS, stringr
NeedsCompilation: no
VignetteBuilder: knitr, prettydoc
RoxygenNote: 5.0.1
Suggests: knitr, prettydoc, testthat, rmarkdown, gplots
Encoding: UTF-8
Repository: CRAN
Packaged: 2017-08-16 18:01:16 UTC; apo
Date/Publication: 2017-08-17 09:59:21 UTC

More information about sim1000G at CRAN
Permanent link

Package MODIStsp updated to version 1.3.3.1 with previous version 1.3.3 dated 2017-08-12

Title: A Tool for Automating Download and Preprocessing of MODIS Land Products Data
Description: Allows automating the creation of time series of rasters derived from MODIS Satellite Land Products data. It performs several typical preprocessing steps such as download, mosaicking, reprojection and resize of data acquired on a specified time period. All processing parameters can be set using a user-friendly GUI. Users can select which layers of the original MODIS HDF files they want to process, which additional Quality Indicators should be extracted from aggregated MODIS Quality Assurance layers and, in the case of Surface Reflectance products , which Spectral Indexes should be computed from the original reflectance bands. For each output layer, outputs are saved as single-band raster files corresponding to each available acquisition date. Virtual files allowing access to the entire time series as a single file are also created. Command-line execution exploiting a previously saved processing options file is also possible, allowing to automatically update time series related to a MODIS product whenever a new image is available.
Author: Lorenzo Busetto [aut, cre], Luigi Ranghetti [aut]
Maintainer: Lorenzo Busetto <lbusett@gmail.com>

Diff between MODIStsp versions 1.3.3 dated 2017-08-12 and 1.3.3.1 dated 2017-08-17

 DESCRIPTION                  |    6 +++---
 MD5                          |   20 ++++++++++----------
 NAMESPACE                    |    1 +
 NEWS.md                      |   13 +++++++++++++
 R/MODIStsp.R                 |    1 +
 R/MODIStsp_process_indexes.R |    8 ++++----
 R/MODIStsp_vrt_create.R      |    8 ++++----
 build/vignette.rds           |binary
 inst/doc/MODIStsp.Rmd        |    2 +-
 inst/doc/MODIStsp.pdf        |binary
 vignettes/MODIStsp.Rmd       |    2 +-
 11 files changed, 38 insertions(+), 23 deletions(-)

More information about MODIStsp at CRAN
Permanent link

New package forwards with initial version 0.1.0
Package: forwards
Type: Package
Title: Data from Surveys Conducted by Forwards
Version: 0.1.0
Authors@R: c(person("Heather", "Turner", email = "ht@heatherturner.net", role = c("aut", "cre")), person("Oliver", "Keyes", role = "aut"))
Description: Anonymized data from surveys conducted by Forwards <http://forwards.github.io/>, the R Foundation task force on women and other under-represented groups. Currently, a single data set of responses to a survey of attendees at useR! 2016 <http://user2016.org/>, the R user conference held at Stanford University, Stanford, California, USA, June 27 - June 30 2016.
URL: https://github.com/forwards/forwards
BugReports: https://github.com/forwards/forwards/issues
License: CC0
Encoding: UTF-8
LazyData: TRUE
Depends: R (>= 2.10)
RoxygenNote: 6.0.1
Suggests: dplyr, FactoMineR, forcats, ggplot2, knitr, likert, rmarkdown, tidyr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-08-16 12:47:27 UTC; hturner
Author: Heather Turner [aut, cre], Oliver Keyes [aut]
Maintainer: Heather Turner <ht@heatherturner.net>
Repository: CRAN
Date/Publication: 2017-08-17 09:34:12 UTC

More information about forwards at CRAN
Permanent link

Package dosresmeta updated to version 2.0.0 with previous version 1.3.3 dated 2016-08-08

Title: Performing Multivariate Dose-Response Meta-Analysis
Description: It consists of a collection of functions to estimate dose-response relations from summarized dose-response data and to combine them according to principles of (multivariate) random-effects model.
Author: Alessio Crippa
Maintainer: Alessio Crippa <alessio.crippa@ki.se>

Diff between dosresmeta versions 1.3.3 dated 2016-08-08 and 2.0.0 dated 2017-08-17

 dosresmeta-1.3.3/dosresmeta/R/coef.dosresmeta.R       |only
 dosresmeta-1.3.3/dosresmeta/R/grl.R                   |only
 dosresmeta-1.3.3/dosresmeta/R/hamling.R               |only
 dosresmeta-1.3.3/dosresmeta/R/predict.dosresmeta.R    |only
 dosresmeta-1.3.3/dosresmeta/R/summary.dosresmeta.R    |only
 dosresmeta-2.0.0/dosresmeta/DESCRIPTION               |   22 
 dosresmeta-2.0.0/dosresmeta/MD5                       |   88 +
 dosresmeta-2.0.0/dosresmeta/NAMESPACE                 |   27 
 dosresmeta-2.0.0/dosresmeta/R/additional.R            |only
 dosresmeta-2.0.0/dosresmeta/R/covariance.R            |only
 dosresmeta-2.0.0/dosresmeta/R/dataset.R               |only
 dosresmeta-2.0.0/dosresmeta/R/dosresmeta-package.R    |  219 +---
 dosresmeta-2.0.0/dosresmeta/R/dosresmeta.R            |  963 +++++++++++++-----
 dosresmeta-2.0.0/dosresmeta/R/methods.R               |only
 dosresmeta-2.0.0/dosresmeta/R/undocumented.R          |only
 dosresmeta-2.0.0/dosresmeta/data/alcohol_esoph.rda    |only
 dosresmeta-2.0.0/dosresmeta/data/alcohol_lc.rda       |only
 dosresmeta-2.0.0/dosresmeta/data/ari.rda              |only
 dosresmeta-2.0.0/dosresmeta/data/bmi_rc.rda           |only
 dosresmeta-2.0.0/dosresmeta/data/ci_ex.rda            |only
 dosresmeta-2.0.0/dosresmeta/data/coffee_cancer.rda    |only
 dosresmeta-2.0.0/dosresmeta/data/coffee_cvd.rda       |only
 dosresmeta-2.0.0/dosresmeta/data/coffee_mort.rda      |only
 dosresmeta-2.0.0/dosresmeta/data/coffee_stroke.rda    |only
 dosresmeta-2.0.0/dosresmeta/data/fish_ra.rda          |only
 dosresmeta-2.0.0/dosresmeta/data/ir_ex.rda            |only
 dosresmeta-2.0.0/dosresmeta/data/milk_mort.rda        |only
 dosresmeta-2.0.0/dosresmeta/data/milk_ov.rda          |only
 dosresmeta-2.0.0/dosresmeta/data/oc_breast.rda        |only
 dosresmeta-2.0.0/dosresmeta/data/process_bc.rda       |only
 dosresmeta-2.0.0/dosresmeta/data/red_bc.rda           |only
 dosresmeta-2.0.0/dosresmeta/data/sim_os.rda           |only
 dosresmeta-2.0.0/dosresmeta/inst/CITATION             |    2 
 dosresmeta-2.0.0/dosresmeta/man/alcohol_crc.Rd        |   19 
 dosresmeta-2.0.0/dosresmeta/man/alcohol_cvd.Rd        |   22 
 dosresmeta-2.0.0/dosresmeta/man/alcohol_esoph.Rd      |only
 dosresmeta-2.0.0/dosresmeta/man/alcohol_lc.Rd         |only
 dosresmeta-2.0.0/dosresmeta/man/ari.Rd                |only
 dosresmeta-2.0.0/dosresmeta/man/blup.dosresmeta.Rd    |only
 dosresmeta-2.0.0/dosresmeta/man/bmi_rc.Rd             |only
 dosresmeta-2.0.0/dosresmeta/man/cc_ex.Rd              |   20 
 dosresmeta-2.0.0/dosresmeta/man/ci_ex.Rd              |only
 dosresmeta-2.0.0/dosresmeta/man/coef.dosresmeta.Rd    |   21 
 dosresmeta-2.0.0/dosresmeta/man/coffee_cancer.Rd      |only
 dosresmeta-2.0.0/dosresmeta/man/coffee_cvd.Rd         |only
 dosresmeta-2.0.0/dosresmeta/man/coffee_mort.Rd        |only
 dosresmeta-2.0.0/dosresmeta/man/coffee_stroke.Rd      |only
 dosresmeta-2.0.0/dosresmeta/man/covar.logrr.Rd        |only
 dosresmeta-2.0.0/dosresmeta/man/covar.smd.Rd          |only
 dosresmeta-2.0.0/dosresmeta/man/dosresmeta-package.Rd |  110 +-
 dosresmeta-2.0.0/dosresmeta/man/dosresmeta.Rd         |  164 +--
 dosresmeta-2.0.0/dosresmeta/man/dosresmeta.control.Rd |only
 dosresmeta-2.0.0/dosresmeta/man/dosresmeta.fixed.Rd   |only
 dosresmeta-2.0.0/dosresmeta/man/dosresmeta.ml.Rd      |only
 dosresmeta-2.0.0/dosresmeta/man/dosresmetaObject.Rd   |only
 dosresmeta-2.0.0/dosresmeta/man/fish_ra.Rd            |only
 dosresmeta-2.0.0/dosresmeta/man/fracpol.Rd            |only
 dosresmeta-2.0.0/dosresmeta/man/gof.Rd                |only
 dosresmeta-2.0.0/dosresmeta/man/grl.Rd                |   78 -
 dosresmeta-2.0.0/dosresmeta/man/hamling.Rd            |   85 -
 dosresmeta-2.0.0/dosresmeta/man/ir_ex.Rd              |only
 dosresmeta-2.0.0/dosresmeta/man/logLik.dosresmeta.Rd  |only
 dosresmeta-2.0.0/dosresmeta/man/milk_mort.Rd          |only
 dosresmeta-2.0.0/dosresmeta/man/milk_ov.Rd            |only
 dosresmeta-2.0.0/dosresmeta/man/mlprof.fun.Rd         |only
 dosresmeta-2.0.0/dosresmeta/man/oc_breast.Rd          |only
 dosresmeta-2.0.0/dosresmeta/man/predict.dosresmeta.Rd |   97 +
 dosresmeta-2.0.0/dosresmeta/man/process_bc.Rd         |only
 dosresmeta-2.0.0/dosresmeta/man/qtest.dosresmeta.Rd   |only
 dosresmeta-2.0.0/dosresmeta/man/red_bc.Rd             |only
 dosresmeta-2.0.0/dosresmeta/man/sim_os.Rd             |only
 dosresmeta-2.0.0/dosresmeta/man/summary.dosresmeta.Rd |   37 
 dosresmeta-2.0.0/dosresmeta/man/vpc.Rd                |only
 dosresmeta-2.0.0/dosresmeta/man/waldtest.Rd           |only
 74 files changed, 1305 insertions(+), 669 deletions(-)

More information about dosresmeta at CRAN
Permanent link

Package bikedata updated to version 0.0.4 with previous version 0.0.3 dated 2017-07-14

Title: Download and Aggregate Data from Public Hire Bicycle Systems
Description: Download and aggregate data from all public hire bicycle systems which provide open data, currently including 'Santander' Cycles in London, U.K., and from the U.S.A., 'citibike' in New York City NY, 'Divvy' in Chicago IL, 'Capital Bikeshare' in Washington DC, 'Hubway' in Boston MA, and 'Metro' in Los Angeles LA.
Author: Mark Padgham [aut, cre], Richard Ellison [aut], Bea Hernández [rev] (Bea reviewed the package for ropensci, see https://github.com/ropensci/onboarding/issues/116), Elaine McVey [rev] (Elaine reviewed the package for ropensci, see https://github.com/ropensci/onboarding/issues/116), SQLite Consortium [ctb] (Authors of included SQLite code)
Maintainer: Mark Padgham <mark.padgham@email.com>

Diff between bikedata versions 0.0.3 dated 2017-07-14 and 0.0.4 dated 2017-08-17

 DESCRIPTION                      |   24 
 MD5                              |   55 -
 NAMESPACE                        |   13 
 R/RcppExports.R                  |   12 
 R/bikedata-package.R             |    5 
 R/database-stats.R               |  130 ++-
 R/stations.R                     |    9 
 R/store-bikedata.R               |   97 ++
 R/tripmat.R                      |   32 
 R/utils.R                        |    6 
 build/vignette.rds               |binary
 inst/doc/bikedata.R              |    3 
 inst/doc/bikedata.Rmd            |   21 
 inst/doc/bikedata.html           | 1283 +++++++++++++++++++++++++--------------
 man/bike_daily_trips.Rd          |    5 
 man/bike_datelimits.Rd           |    3 
 man/bike_db_totals.Rd            |   23 
 man/bike_demographic_data.Rd     |   25 
 man/bike_rm_db.Rd                |    3 
 man/bike_stations.Rd             |    3 
 man/bike_summary_stats.Rd        |    3 
 man/bike_tripmat.Rd              |    3 
 man/index_bikedata_db.Rd         |only
 man/store_bikedata.Rd            |    9 
 src/RcppExports.cpp              |   12 
 src/bikedata_init.c              |   24 
 src/read-city-files.h            |    6 
 tests/testthat/test-store-data.R |    6 
 vignettes/bikedata.Rmd           |   21 
 29 files changed, 1205 insertions(+), 631 deletions(-)

More information about bikedata at CRAN
Permanent link

Package shadow updated to version 0.3.5 with previous version 0.3.3 dated 2017-06-14

Title: Geometric Shadow Calculations
Description: Functions for calculating (1) shadow heights; (2) shadow footprint on ground polygons; and (3) Sky View Factor values. Inputs include a polygonal layer of obstacle outlines along with their heights, sun azimuth and sun elevation. The package also provides functions for related preliminary calculations: breaking polygons into line segments, finding segment azimuth, shifting segments by azimuth and distance, and constructing the footprint of a line of sight between an observer and the sun.
Author: Michael Dorman [aut, cre], Evyatar Erell [ctb], Itai Kloog [ctb], Adi Vulkan [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>

Diff between shadow versions 0.3.3 dated 2017-06-14 and 0.3.5 dated 2017-08-17

 DESCRIPTION                |    6 +--
 MD5                        |   26 ++++++-------
 NEWS.md                    |    8 +++-
 R/SVF.R                    |   32 +++++++++++++++-
 R/SVFPnt.R                 |   82 ++++++++++++++++++++++++++++++++-----------
 R/checkInputs.R            |   12 +++++-
 R/ray.R                    |    4 +-
 R/shadow.R                 |   21 +++++++----
 R/shadowHeight.R           |   85 ++++++++++++++++++++++++++++++++++++++-------
 build/vignette.rds         |binary
 inst/doc/introduction.html |   10 ++---
 man/SVF.Rd                 |   23 +++++++++++-
 man/shadow.Rd              |   21 +++++++----
 man/shadowHeight.Rd        |   14 +++++--
 14 files changed, 265 insertions(+), 79 deletions(-)

More information about shadow at CRAN
Permanent link

Package MSCMT updated to version 1.3.0 with previous version 1.2.0 dated 2017-01-30

Title: Multivariate Synthetic Control Method Using Time Series
Description: Multivariate Synthetic Control Method Using Time Series. Three generalizations of the synthetic control method (which has already an implementation in package 'Synth') are implemented: first, 'MSCMT' allows for using multiple outcome variables, second, time series can be supplied as economic predictors, and third, a well-defined cross-validation approach can be used. Much effort has been taken to make the implementation as stable as possible (including edge cases) without losing computational efficiency.
Author: Martin Becker [aut, cre], Stefan Klößner [aut], Karline Soetaert [com], LAPACK authors [cph]
Maintainer: Martin Becker <martin.becker@mx.uni-saarland.de>

Diff between MSCMT versions 1.2.0 dated 2017-01-30 and 1.3.0 dated 2017-08-17

 DESCRIPTION                    |   24 +-
 MD5                            |   75 ++++----
 NAMESPACE                      |   10 +
 NEWS                           |   24 ++
 R/Helpers.r                    |  349 +++++++++++++++++++++++++++++++++--------
 R/MSCMT-package.r              |   21 +-
 R/ModularOptimization.r        |   18 ++
 R/atomOpt.r                    |   56 ++++--
 R/determine_v.r                |  316 ++++++++++++++++++++++++-------------
 R/ggplot.r                     |   60 ++++---
 R/improveSynth.r               |   44 +++++
 R/mscmt.r                      |  125 ++++++++++++--
 R/multiOpt.r                   |   92 +++++++---
 R/prepare.r                    |   14 +
 R/zzz.r                        |    2 
 build/partial.rdb              |only
 build/vignette.rds             |binary
 inst/REFERENCES.bib            |only
 inst/doc/CheckingSynth.Rmd     |    5 
 inst/doc/CheckingSynth.html    |   38 ++--
 inst/doc/UsingTimeSeries.Rmd   |    9 -
 inst/doc/UsingTimeSeries.html  |   25 ++
 inst/doc/WorkingWithMSCMT.Rmd  |    8 
 inst/doc/WorkingWithMSCMT.html |   66 ++++---
 man/MSCMTfunction.Rd           |   56 +++++-
 man/MSCMTpackage.Rd            |   20 +-
 man/compare.Rd                 |    1 
 man/did.Rd                     |    1 
 man/ggplot.mscmt.Rd            |    8 
 man/improveSynth.Rd            |    1 
 man/listFromLong.Rd            |    1 
 man/macros                     |only
 man/plot.mscmt.Rd              |    1 
 man/ppratio.Rd                 |    1 
 man/print.mscmt.Rd             |    1 
 man/pvalue.Rd                  |    1 
 src/MSCMT.c                    |    1 
 vignettes/CheckingSynth.Rmd    |    5 
 vignettes/UsingTimeSeries.Rmd  |    9 -
 vignettes/WorkingWithMSCMT.Rmd |    8 
 40 files changed, 1099 insertions(+), 397 deletions(-)

More information about MSCMT at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.