Title: Templates for Data Frames
Description: Generate data frames from templates.
Author: William Michael Landau [aut, cre]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between wildcard versions 1.0.2 dated 2017-07-23 and 1.0.3 dated 2017-08-22
wildcard-1.0.2/wildcard/R/namespace.R |only wildcard-1.0.3/wildcard/DESCRIPTION | 15 +- wildcard-1.0.3/wildcard/MD5 | 27 +-- wildcard-1.0.3/wildcard/R/package.R |only wildcard-1.0.3/wildcard/R/ui.R | 111 ++++++++------- wildcard-1.0.3/wildcard/R/utils.R | 60 +++++--- wildcard-1.0.3/wildcard/inst/doc/wildcard.Rmd | 29 +++ wildcard-1.0.3/wildcard/inst/doc/wildcard.html | 28 +++ wildcard-1.0.3/wildcard/man/expandrows.Rd | 16 +- wildcard-1.0.3/wildcard/man/wildcard-package.Rd |only wildcard-1.0.3/wildcard/man/wildcard.Rd | 30 ++-- wildcard-1.0.3/wildcard/tests/testthat/test-edge-cases.R | 44 ++++- wildcard-1.0.3/wildcard/tests/testthat/test-examples.R | 76 ++++++---- wildcard-1.0.3/wildcard/tests/testthat/test-wildcard.R | 80 +++++++--- wildcard-1.0.3/wildcard/vignettes/logo-vignette.png |binary wildcard-1.0.3/wildcard/vignettes/wildcard.Rmd | 29 +++ 16 files changed, 379 insertions(+), 166 deletions(-)
Title: Command Line Optional and Positional Argument Parser
Description: A command line parser to
be used with Rscript to write "#!" shebang scripts that gracefully
accept positional and optional arguments and automatically generate usage.
Author: Trevor L Davis. Ports examples from the argparse Python module by the
Python Software Foundation. Ports examples from the getopt package by Allen
Day.
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between argparse versions 1.0.4 dated 2016-10-28 and 1.0.7 dated 2017-08-22
argparse-1.0.4/argparse/inst/doc/argparse.pdf |only argparse-1.0.7/argparse/DESCRIPTION | 10 +- argparse-1.0.7/argparse/MD5 | 18 ++-- argparse-1.0.7/argparse/NEWS | 10 ++ argparse-1.0.7/argparse/R/argparse.R | 24 +++++- argparse-1.0.7/argparse/build/vignette.rds |binary argparse-1.0.7/argparse/inst/COPYRIGHTS | 6 - argparse-1.0.7/argparse/inst/doc/argparse.R | 64 ++++++++--------- argparse-1.0.7/argparse/inst/doc/argparse.html |only argparse-1.0.7/argparse/man/ArgumentParser.Rd | 2 argparse-1.0.7/argparse/tests/testthat/test-argparse.R | 27 ++++++- 11 files changed, 106 insertions(+), 55 deletions(-)
Title: Data Management and Analysis of Tests
Description: A system for the management, assessment, and psychometric analysis of data from educational and psychological tests. Developed at Cito, The Netherlands, with subsidy from the Dutch Ministry of Education, Culture, and Science.
Author: Gunter Maris, Timo Bechger, Jesse Koops, Ivailo Partchev
Maintainer: Ivailo Partchev <Ivailo.Partchev@cito.nl>
Diff between dexter versions 0.4.2 dated 2017-07-18 and 0.4.4 dated 2017-08-22
dexter-0.4.2/dexter/vignettes/irtools.bib |only dexter-0.4.4/dexter/DESCRIPTION | 10 - dexter-0.4.4/dexter/MD5 | 42 +++--- dexter-0.4.4/dexter/NEWS | 7 + dexter-0.4.4/dexter/R/anon.R | 4 dexter-0.4.4/dexter/R/database.R | 16 ++ dexter-0.4.4/dexter/R/dexter.R | 68 +++++----- dexter-0.4.4/dexter/build/partial.rdb |binary dexter-0.4.4/dexter/build/vignette.rds |binary dexter-0.4.4/dexter/inst/doc/Plausible_Values.Rmd | 2 dexter-0.4.4/dexter/inst/doc/Plausible_Values.html | 30 ++-- dexter-0.4.4/dexter/inst/doc/Test_Individual_differences.Rmd | 2 dexter-0.4.4/dexter/inst/doc/Test_Individual_differences.html | 16 +- dexter-0.4.4/dexter/inst/doc/data_management.html | 4 dexter-0.4.4/dexter/inst/doc/dexter.Rmd | 2 dexter-0.4.4/dexter/inst/doc/dexter.html | 16 +- dexter-0.4.4/dexter/inst/doc/profile-plots.Rmd | 2 dexter-0.4.4/dexter/inst/doc/profile-plots.html | 14 +- dexter-0.4.4/dexter/vignettes/Plausible_Values.Rmd | 2 dexter-0.4.4/dexter/vignettes/Test_Individual_differences.Rmd | 2 dexter-0.4.4/dexter/vignettes/dexter.Rmd | 2 dexter-0.4.4/dexter/vignettes/dexter.bib |only dexter-0.4.4/dexter/vignettes/profile-plots.Rmd | 2 23 files changed, 136 insertions(+), 107 deletions(-)
Title: Bayesian Phylogeographic and Ecological Clustering
Description: Model-based clustering for phylogeographic data comprising mtDNA sequences and geographical locations along with optional environmental characteristics, aiming to identify migration events that led to homogeneous population clusters.
Author: Ioanna Manolopoulou, Axel Hille
Maintainer: Ioanna Manolopoulou <ioanna.manolopoulou@gmail.com>
Diff between BPEC versions 1.0 dated 2016-04-06 and 1.1 dated 2017-08-22
BPEC-1.0/BPEC/R/BPEC-internal.R |only BPEC-1.0/BPEC/R/BPEC.ContourPlot.R |only BPEC-1.0/BPEC/R/BPEC.CovariatesPlot.R |only BPEC-1.0/BPEC/man/BPEC-package.Rd |only BPEC-1.0/BPEC/man/BPEC.ContourPlot.Rd |only BPEC-1.0/BPEC/man/BPEC.CovariatesPlot.Rd |only BPEC-1.0/BPEC/man/BPEC.GeoTree.Rd |only BPEC-1.0/BPEC/man/BPEC.MCMC.Rd |only BPEC-1.0/BPEC/man/BPEC.TreePlot.Rd |only BPEC-1.0/BPEC/src/BPEC.c |only BPEC-1.0/BPEC/src/Rinterface.h |only BPEC-1.1/BPEC/DESCRIPTION | 13 BPEC-1.1/BPEC/MD5 | 56 +- BPEC-1.1/BPEC/NAMESPACE | 37 + BPEC-1.1/BPEC/R/BPEC.MCMC.R | 570 ++++++++++++++---------------- BPEC-1.1/BPEC/R/BPEC.Phylo2GE.R | 91 ++-- BPEC-1.1/BPEC/R/BPEC.R |only BPEC-1.1/BPEC/R/BPEC.TreeEdges.R | 96 ++--- BPEC-1.1/BPEC/R/BPEC.TreePlot.R | 272 ++++++-------- BPEC-1.1/BPEC/R/BPEC.functions.R | 15 BPEC-1.1/BPEC/R/bpec.contourPlot.R |only BPEC-1.1/BPEC/R/bpec.covariatesPlot.R |only BPEC-1.1/BPEC/R/bpec.load.R |only BPEC-1.1/BPEC/R/zzz.R |only BPEC-1.1/BPEC/man/bpec.Rd |only BPEC-1.1/BPEC/man/bpec.contourPlot.Rd |only BPEC-1.1/BPEC/man/bpec.covariatesPlot.Rd |only BPEC-1.1/BPEC/man/bpec.geoTree.Rd |only BPEC-1.1/BPEC/man/bpec.loadCoords.Rd |only BPEC-1.1/BPEC/man/bpec.loadSeq.Rd |only BPEC-1.1/BPEC/man/bpec.mcmc.Rd |only BPEC-1.1/BPEC/man/bpec.treePlot.Rd |only BPEC-1.1/BPEC/src/bpecfunction.c |only BPEC-1.1/BPEC/src/hashingfunctions.c | 5 BPEC-1.1/BPEC/src/hashingfunctions.h | 5 BPEC-1.1/BPEC/src/loopfunctions.h | 1 BPEC-1.1/BPEC/src/matrices.c | 5 BPEC-1.1/BPEC/src/matrices.h | 5 BPEC-1.1/BPEC/src/randomnumbers.c | 6 BPEC-1.1/BPEC/src/registerDynamicSymbol.c |only BPEC-1.1/BPEC/src/treelikelifunctions.c | 5 BPEC-1.1/BPEC/src/treelikelifunctions.h | 5 42 files changed, 578 insertions(+), 609 deletions(-)
Title: Mendelian Randomization Package
Description: Encodes several methods for performing Mendelian randomization
analyses with summarized data. Summarized data on genetic associations with the
exposure and with the outcome can be obtained from large consortia. These data
can be used for obtaining causal estimates using instrumental variable methods.
Author: Olena Yavorska <yavorsko@tcd.ie>
Maintainer: Stephen Burgess <sb452@medschl.cam.ac.uk>
Diff between MendelianRandomization versions 0.2.0 dated 2016-09-30 and 0.2.2 dated 2017-08-22
DESCRIPTION | 15 MD5 | 84 +-- NAMESPACE | 2 NEWS | 9 R/AllGenerics.R | 30 - R/extract.pheno.csv-function.R | 2 R/mr_egger-methods.R | 23 R/mr_ivw-methods.R | 19 R/mr_median-methods.R | 4 build/vignette.rds |binary inst/doc/Vignette_MR.R | 328 ++++++------- inst/doc/Vignette_MR.Rmd | 6 inst/doc/Vignette_MR.pdf |binary man/MRInput-class.Rd | 2 man/calcium.Rd | 3 man/ci_normal.Rd | 1 man/ci_t.Rd | 1 man/coursedata.Rd | 1 man/decimals.Rd | 1 man/egger.bounds.Rd | 1 man/extract.pheno.csv.Rd | 1 man/getter.Rd | 7 man/ldlc.Rd | 13 man/loglikelihood.Rd | 1 man/loglikelihoodcorrel.Rd | 1 man/loglikelihoodrhocorrel.Rd | 1 man/mr_allmethods.Rd | 13 man/mr_egger.Rd | 1 man/mr_input.Rd | 1 man/mr_ivw.Rd | 1 man/mr_maxlik.Rd | 1 man/mr_median.Rd | 9 man/mr_plot.Rd | 13 man/penalised.weights.Rd | 1 man/penalised.weights.delta.Rd | 1 man/r.weights.Rd | 1 man/r.weights.delta.Rd | 1 man/simpleCap.Rd | 1 man/values.Rd | 5 man/weighted.median.Rd | 3 man/weighted.median.boot.se.Rd | 3 vignettes/Vignette_MR.Rmd | 6 vignettes/Vignette_MR.html | 1016 +++++++++++++++++++---------------------- 43 files changed, 780 insertions(+), 853 deletions(-)
More information about MendelianRandomization at CRAN
Permanent link
Title: Query 'HaploReg' and 'RegulomeDB'
Description: A set of utilities for querying
'HaploReg' <http://archive.broadinstitute.org/mammals/haploreg/haploreg.php>
and 'RegulomeDB' <http://www.regulomedb.org> web-based tools. The package connects to
'HaploReg' or 'RegulomeDB', searches and downloads results, without
opening web pages, directly from R environment.
Results are stored in a data frame that can be directly used in various
kinds of downstream analyses.
Author: Ilya Y. Zhbannikov [aut, cre],
Konstantin G Arbeev [ctb] (Konstantin supervised the technical/software
development.),
Anatoliy I Yashin [ctb] (Anatoliy supervised the technical/software
development and is a Principal Invesigator of this project)
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>
Diff between haploR versions 1.5.1 dated 2017-07-18 and 1.6.0 dated 2017-08-22
DESCRIPTION | 10 - MD5 | 14 +- NAMESPACE | 1 R/general.R | 1 R/haploreg.R | 274 +++++++++++++++++++++++++++--------------- README.md | 1 inst/NEWS | 4 inst/doc/haplor-vignette.html | 16 +- 8 files changed, 204 insertions(+), 117 deletions(-)
Title: Random Partition Distribution Indexed by Pairwise Information
Description: Implementations are provided for the models described in the paper D. B. Dahl, R. Day, J. Tsai (2017) <DOI:10.1080/01621459.2016.1165103>. The Ewens, Ewens-Pitman, Ewens attraction, Ewens-Pitman attraction, and ddCRP distributions are available for prior simulation. We hope in the future to add posterior simulation with a user-supplied likelihood. Supporting functions for partition estimation and plotting are also planned.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between shallot versions 0.3.2 dated 2017-05-25 and 0.4.0 dated 2017-08-22
shallot-0.3.2/shallot/inst/java/scala-2.10/shallot_2.10-0.3.2.jar |only shallot-0.3.2/shallot/inst/java/scala-2.11/shallot_2.11-0.3.2.jar |only shallot-0.3.2/shallot/inst/java/scala-2.12/shallot_2.12-0.3.2.jar |only shallot-0.3.2/shallot/man/process.partition.Rd |only shallot-0.3.2/shallot/man/sample.partition.Rd |only shallot-0.4.0/shallot/DESCRIPTION | 15 shallot-0.4.0/shallot/MD5 | 38 shallot-0.4.0/shallot/NAMESPACE | 11 shallot-0.4.0/shallot/NEWS | 8 shallot-0.4.0/shallot/R/onLoad.R | 24 shallot-0.4.0/shallot/R/shallot.R | 462 ++++++++-- shallot-0.4.0/shallot/inst/COPYRIGHT | 18 shallot-0.4.0/shallot/inst/java/scala-2.10/shallot.jar |only shallot-0.4.0/shallot/inst/java/scala-2.11/shallot.jar |only shallot-0.4.0/shallot/inst/java/scala-2.12/shallot.jar |only shallot-0.4.0/shallot/java/shallot-sources.jar |binary shallot-0.4.0/shallot/man/enumerate.partitions.Rd |only shallot-0.4.0/shallot/man/estimate.partition.Rd | 6 shallot-0.4.0/shallot/man/pairwise.probabilities.Rd | 6 shallot-0.4.0/shallot/man/partition.distribution.Rd | 6 shallot-0.4.0/shallot/man/partition.pmf.Rd |only shallot-0.4.0/shallot/man/plot.partition.Rd | 4 shallot-0.4.0/shallot/man/process.samples.Rd |only shallot-0.4.0/shallot/man/sample.partitions.Rd |only shallot-0.4.0/shallot/man/sample.partitions.posterior.Rd |only shallot-0.4.0/shallot/man/sampling.model.Rd |only shallot-0.4.0/shallot/man/shallot-package.Rd | 10 27 files changed, 452 insertions(+), 156 deletions(-)
Title: Penalized Ordinal Regression
Description: Fits ordinal regression models with elastic net penalty.
Supported model families include cumulative probability, stopping ratio,
continuation ratio, and adjacent category. These families are a subset of
vector glm's which belong to a model class we call the elementwise link
multinomial-ordinal (ELMO) class. Each family in this class links a vector
of covariates to a vector of class probabilities. Each of these families
has a parallel form, which is appropriate for ordinal response data, as
well as a nonparallel form that is appropriate for an unordered categorical
response, or as a more flexible model for ordinal data. The parallel model
has a single set of coefficients, whereas the nonparallel model has a set of
coefficients for each response category except the baseline category. It is
also possible to fit a model with both parallel and nonparallel terms, which
we call the semi-parallel model. The semi-parallel model has the flexibility
of the nonparallel model, but the elastic net penalty shrinks it toward the
parallel model.
Author: Michael Wurm [aut, cre],
Paul Rathouz [aut],
Bret Hanlon [aut]
Maintainer: Michael Wurm <wurm@wisc.edu>
Diff between ordinalNet versions 2.1 dated 2017-08-19 and 2.2 dated 2017-08-22
DESCRIPTION | 6 +++--- MD5 | 25 ++++++++++++++----------- NAMESPACE | 3 +++ R/ordinalNet-methods.R | 31 ++++++++++++++++++++++++------- R/ordinalNet.R | 16 +++++++++------- R/ordinalNetCV.R | 36 +++++++++++++++++++++++++++--------- R/ordinalNetTune.R | 37 ++++++++++++++++++++++++++++--------- man/ordinalNet.Rd | 16 +++++++++------- man/ordinalNetTune.Rd | 2 +- man/print.ordinalNet.Rd | 6 ++---- man/print.ordinalNetCV.Rd | 5 ++--- man/print.ordinalNetTune.Rd | 5 ++--- man/summary.ordinalNet.Rd |only man/summary.ordinalNetCV.Rd |only man/summary.ordinalNetTune.Rd |only 15 files changed, 124 insertions(+), 64 deletions(-)
Title: Modeling Phylogenetic Signals using Eigenvector Maps
Description: Computational tools to represent phylogenetic signals using adapted eigenvector maps.
Author: Guillaume Guenard, with contribution from Pierre Legendre
Maintainer: Guillaume Guenard <guillaume.guenard@gmail.com>
Diff between MPSEM versions 0.3-1 dated 2015-12-17 and 0.3-2 dated 2017-08-22
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- NAMESPACE | 2 +- build/vignette.rds |binary inst/doc/MPSEM.Rnw | 23 ++++------------------- inst/doc/MPSEM.pdf |binary man/GraphFunctions.Rd | 4 ++-- src/registerDynamicSymbol.c |only vignettes/MPSEM.Rnw | 23 ++++------------------- 9 files changed, 23 insertions(+), 52 deletions(-)
Title: Multilevel Model Intraclass Correlation for Slope Heterogeneity
Description: A function and vignettes for computing an intraclass correlation
described in Aguinis & Culpepper (2015) <doi:10.1177/1094428114563618>.
This package quantifies the share of variance in a dependent variable that
is attributed to group heterogeneity in slopes.
Author: Steven Andrew Culpepper [aut, cph, cre],
Herman Aguinis [aut, cph]
Maintainer: Steven Andrew Culpepper <sculpepp@illinois.edu>
Diff between iccbeta versions 1.0.1 dated 2017-04-26 and 1.1.0 dated 2017-08-22
iccbeta-1.0.1/iccbeta/src/init.c |only iccbeta-1.1.0/iccbeta/DESCRIPTION | 14 - iccbeta-1.1.0/iccbeta/MD5 | 29 +-- iccbeta-1.1.0/iccbeta/NAMESPACE | 11 - iccbeta-1.1.0/iccbeta/NEWS.md | 31 ++- iccbeta-1.1.0/iccbeta/R/RcppExports.R | 178 +++++++++++----------- iccbeta-1.1.0/iccbeta/R/datasets-docs.R | 215 ++++++++++++++------------- iccbeta-1.1.0/iccbeta/R/iccbeta-internal.R | 127 ++++++++------- iccbeta-1.1.0/iccbeta/README.md | 16 +- iccbeta-1.1.0/iccbeta/inst/CITATION | 26 +-- iccbeta-1.1.0/iccbeta/man/Hofmann.Rd | 145 +++++++++--------- iccbeta-1.1.0/iccbeta/man/icc_beta.Rd | 204 +++++++++++++------------ iccbeta-1.1.0/iccbeta/man/iccbeta-package.Rd | 182 ++++++++++++---------- iccbeta-1.1.0/iccbeta/man/simICCdata.Rd | 130 ++++++++-------- iccbeta-1.1.0/iccbeta/src/RcppExports.cpp | 12 + iccbeta-1.1.0/iccbeta/src/icc_beta.cpp | 38 +++- 16 files changed, 735 insertions(+), 623 deletions(-)
Title: A Powerful Tool to Quickly Compare Huge Lists and Draw Venn
Diagrams
Description: Compare lists (from 2 to infinite) and plot the results in a Venn diagram if (N<=4) with regulation details. It allows to produce a complete annotated file, merging the annotations of the compared lists. It is also possible to compute an overlaps table to show the overlaps proportions of all the couples of lists and draw proportional Venn diagrams.
Author: Nicolas Cagnard
Maintainer: Nicolas Cagnard <nicolas.cagnard@gmail.com>
Diff between eVenn versions 2.3.5 dated 2017-06-29 and 2.3.6 dated 2017-08-22
DESCRIPTION | 8 - MD5 | 8 - R/evenn.R | 229 ++++++++++++++++++++++++++++++++++++++++++--------- R/man.evenn.R | 8 - man/eVenn-package.Rd | 4 5 files changed, 204 insertions(+), 53 deletions(-)
Title: Joint Quantile and Expected Shortfall Regression
Description: Simultaneous modeling of the quantile and the expected shortfall of a response variable given
a set of covariates, see Dimitriadis and Bayer (2017) <arXiv:1704.02213>.
Author: Sebastian Bayer [aut, cre],
Timo Dimitriadis [aut]
Maintainer: Sebastian Bayer <sebastian.bayer@uni-konstanz.de>
Diff between esreg versions 0.3.0 dated 2017-08-17 and 0.3.1 dated 2017-08-22
DESCRIPTION | 8 ++-- MD5 | 56 +++++++++++++++++----------------- NEWS.md | 3 + R/RcppExports.R | 37 +++++++++++++++------- R/esreg.R | 47 +++++++++++++++------------- R/esreg_twostep.R | 5 +-- R/loss_functions.R | 4 +- R/nuisance_quantities.R | 13 +++++++ man/G1_fun.Rd | 1 man/G1_prime_fun.Rd | 1 man/G2_curly_fun.Rd | 1 man/G2_fun.Rd | 1 man/G2_prime_fun.Rd | 1 man/G_vec.Rd | 10 +++--- man/conditional_truncated_variance.Rd | 8 ++++ man/density_quantile_function.Rd | 4 +- man/esr_loss.Rd | 2 - man/esr_psi_lp.Rd | 11 ++++-- man/esr_rho_lp.Rd | 7 ++-- man/esreg.Rd | 19 ++++++----- man/esreg_twostep.Rd | 2 - man/gpl.Rd | 2 - man/summary.esreg.Rd | 1 man/summary.esreg_twostep.Rd | 1 man/vcov.esreg.Rd | 28 +++++++++-------- man/vcov.esreg_twostep.Rd | 25 ++++++++------- src/covariance_functions.cpp | 2 + src/helper_functions.cpp | 1 src/target_functions.cpp | 36 +++++++++++++-------- 29 files changed, 207 insertions(+), 130 deletions(-)
Title: A 'dplyr' Interface for Crunch
Description: In order to facilitate analysis of datasets hosted on the Crunch
data platform <http://crunch.io/>, the 'crplyr' package implements 'dplyr'
methods on top of the Crunch backend. The usual methods "select", "filter",
"mutate", "group_by", and "summarize" are implemented in such a way as to
perform as much computation on the server and pull as little data locally
as possible.
Author: Neal Richardson [aut, cre]
Maintainer: Neal Richardson <neal@crunch.io>
Diff between crplyr versions 0.1.2 dated 2017-06-06 and 0.1.4 dated 2017-08-22
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ tests/testthat/test-as-tibble.R | 2 +- tests/testthat/test-filter.R | 2 +- tests/testthat/test-select.R | 6 +++--- 6 files changed, 17 insertions(+), 13 deletions(-)
Title: Mathematical Morphology in Any Number of Dimensions
Description: Provides tools for performing mathematical morphology operations,
such as erosion and dilation, on data of arbitrary dimensionality. Can also
be used for finding connected components, resampling, filtering, smoothing
and other image processing-style operations.
Author: Jon Clayden
Maintainer: Jon Clayden <code@clayden.org>
Diff between mmand versions 1.5.1 dated 2017-07-08 and 1.5.2 dated 2017-08-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 7 +++++++ src/Resampler.cpp | 6 +++--- tests/testthat/test-20-resample.R | 8 ++++---- 5 files changed, 22 insertions(+), 15 deletions(-)
Title: Extract and Visualize the Results of Multivariate Data Analyses
Description: Provides some easy-to-use functions to extract and visualize the
output of multivariate data analyses, including 'PCA' (Principal Component
Analysis), 'CA' (Correspondence Analysis), 'MCA' (Multiple Correspondence
Analysis), 'FAMD' (Factor Analysis of Mixed Data), 'MFA' (Multiple Factor Analysis) and 'HMFA' (Hierarchical Multiple
Factor Analysis) functions from different R packages. It contains also functions
for simplifying some clustering analysis steps and provides 'ggplot2' - based
elegant data visualization.
Author: Alboukadel Kassambara [aut, cre],
Fabian Mundt [aut]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between factoextra versions 1.0.4 dated 2017-01-09 and 1.0.5 dated 2017-08-22
DESCRIPTION | 18 - MD5 | 122 ++++---- NEWS.md | 55 +++ R/eclust.R | 7 R/fviz.R | 252 +++++++++++------ R/fviz_add.R | 10 R/fviz_ca.R | 94 +++--- R/fviz_cluster.R | 21 - R/fviz_dend.R | 3 R/fviz_famd.R | 31 +- R/fviz_hmfa.R | 25 - R/fviz_mca.R | 41 +- R/fviz_mclust.R | 9 R/fviz_mfa.R | 17 - R/fviz_pca.R | 113 +++++-- R/utilities.R | 7 R/zzz.R |only README.md | 656 +++++++++++++++++++++++++++++++++++++++++++++- man/decathlon2.Rd | 1 man/deprecated.Rd | 23 - man/dist.Rd | 9 man/eclust.Rd | 14 man/eigenvalue.Rd | 11 man/facto_summarize.Rd | 7 man/fviz.Rd | 108 ++++--- man/fviz_add.Rd | 11 man/fviz_ca.Rd | 104 +++---- man/fviz_cluster.Rd | 21 - man/fviz_contrib.Rd | 12 man/fviz_cos2.Rd | 11 man/fviz_dend.Rd | 1 man/fviz_ellipses.Rd | 19 + man/fviz_famd.Rd | 44 +-- man/fviz_hmfa.Rd | 43 +-- man/fviz_mca.Rd | 72 ++--- man/fviz_mclust.Rd | 16 - man/fviz_mfa.Rd | 42 +- man/fviz_nbclust.Rd | 9 man/fviz_pca.Rd | 85 +++-- man/fviz_silhouette.Rd | 7 man/get_ca.Rd | 7 man/get_clust_tendency.Rd | 7 man/get_famd.Rd | 1 man/get_hmfa.Rd | 3 man/get_mca.Rd | 9 man/get_mfa.Rd | 3 man/get_pca.Rd | 7 man/hcut.Rd | 1 man/hkmeans.Rd | 3 man/housetasks.Rd | 1 man/multishapes.Rd | 1 man/poison.Rd | 1 man/print.factoextra.Rd | 1 tools |only 54 files changed, 1572 insertions(+), 624 deletions(-)
Title: Computes Pdf, Cdf, Quantile, Random Numbers and Provides
Estimation for any Univariate Wrapped Distributions
Description: Computes the pdf, cdf, quantile, random numbers for any wrapped G distributions. Computes maximum likelihood estimates of the parameters, standard errors, 95 percent confidence intervals, value of Cramer-von Misses statistic, value of Anderson Darling statistic, value of Kolmogorov Smirnov test statistic and its $p$-value, value of Akaike Information Criterion, value of Consistent Akaike Information Criterion, value of Bayesian Information Criterion, value of Hannan-Quinn information criterion, minimum value of the negative log-likelihood function and convergence status when the wrapped distribution is fitted to some data.
Author: Saralees Nadarajah, Yuanyuan Zhang
Maintainer: Saralees Nadarajah <mbbsssn2@manchester.ac.uk>
Diff between Wrapped versions 1.0 dated 2017-02-05 and 2.0 dated 2017-08-22
DESCRIPTION | 16 - MD5 | 30 +- NAMESPACE | 3 R/wrapped.R | 694 +++++++++++++++++++++++++++++++++++++++++++++---- build |only inst |only man/Wrapped-package.Rd | 10 man/wrappedg.Rd | 21 - vignettes |only 9 files changed, 697 insertions(+), 77 deletions(-)
Title: Tree-Based Varying Coefficient Regression for Generalized Linear
and Ordinal Mixed Models
Description: Recursive partitioning for varying coefficient generalized linear models and ordinal linear mixed models. Special features are coefficient-wise partitioning, non-varying coefficients and partitioning of time-varying variables in longitudinal regression.
Author: Reto Buergin [aut, cre, cph],
Gilbert Ritschard [ctb, ths]
Maintainer: Reto Buergin <rbuergin@gmx.ch>
Diff between vcrpart versions 0.4-2 dated 2016-11-05 and 1.0-0 dated 2017-08-22
DESCRIPTION | 10 MD5 | 73 - NAMESPACE | 4 NEWS | 46 R/AllGeneric.R | 2 R/fvcm.R | 994 +++++++------ R/olmm-methods.R | 1539 +++++++++++---------- R/olmm.R | 850 ++++++----- R/tvcm-cv.R | 813 +++++------ R/tvcm-methods.R | 869 ++++++------ R/tvcm-plot.R | 277 ++- R/tvcm-utils.R | 3498 +++++++++++++++++++++++++------------------------ R/tvcm.R | 817 ++++++----- R/utils.R | 757 ++++++---- ToDo | 4 build |only inst/CITATION | 25 inst/doc |only man/PL.Rd | 5 man/fvcm-methods.Rd | 11 man/fvcm.Rd | 33 man/olmm-gefp.Rd | 6 man/olmm-methods.Rd | 10 man/olmm.Rd | 10 man/poverty.Rd | 5 man/tvcglm.Rd | 23 man/tvcm-control.Rd | 4 man/tvcm-cv.Rd | 38 man/tvcm.Rd | 45 man/tvcolmm.Rd | 32 man/vcrpart-formula.Rd | 43 src/olmm.c | 10 vignettes |only 33 files changed, 5812 insertions(+), 5041 deletions(-)
Title: Bi-Directional Interface Between R and Scala with Callbacks
Description: The Scala <http://www.scala-lang.org/> interpreter is embedded in R and callbacks to R from the embedded interpreter are supported. Conversely, the R interpreter is embedded in Scala. Scala versions in the 2.10.x, 2.11.x, and 2.12.x series are supported.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between rscala versions 2.2.2 dated 2017-05-25 and 2.3.1 dated 2017-08-22
rscala-2.2.2/rscala/inst/java/scala-2.10/rscala_2.10-2.2.2.jar |only rscala-2.2.2/rscala/inst/java/scala-2.11/rscala_2.11-2.2.2.jar |only rscala-2.2.2/rscala/inst/java/scala-2.12/rscala_2.12-2.2.2.jar |only rscala-2.3.1/rscala/DESCRIPTION | 10 rscala-2.3.1/rscala/MD5 | 42 - rscala-2.3.1/rscala/NAMESPACE | 9 rscala-2.3.1/rscala/NEWS | 22 rscala-2.3.1/rscala/R/completion.R |only rscala-2.3.1/rscala/R/protocol.R | 3 rscala-2.3.1/rscala/R/rServer.R | 7 rscala-2.3.1/rscala/R/scala.R | 293 ++++++---- rscala-2.3.1/rscala/README | 17 rscala-2.3.1/rscala/build |only rscala-2.3.1/rscala/inst/README | 17 rscala-2.3.1/rscala/inst/doc |only rscala-2.3.1/rscala/inst/java/scala-2.10/rscala_2.10-2.3.1.jar |only rscala-2.3.1/rscala/inst/java/scala-2.11/rscala_2.11-2.3.1.jar |only rscala-2.3.1/rscala/inst/java/scala-2.12/rscala_2.12-2.3.1.jar |only rscala-2.3.1/rscala/java/rscala-sources.jar |binary rscala-2.3.1/rscala/man/constructor.Rd | 32 - rscala-2.3.1/rscala/man/eval.Rd | 26 rscala-2.3.1/rscala/vignettes |only 22 files changed, 312 insertions(+), 166 deletions(-)
Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in 'movebank.org'
as well as tools to visualize and statistically analyze animal movement data,
among others functions to calculate dynamic Brownian Bridge Movement Models.
Move helps addressing movement ecology questions.
Author: Bart Kranstauber [aut, cre],
Marco Smolla [aut],
Anne K Scharf [aut]
Maintainer: Bart Kranstauber <bart.kranstauber@ieu.uzh.ch>
Diff between move versions 2.1.0 dated 2016-08-23 and 3.0.0 dated 2017-08-22
move-2.1.0/move/R/RcppExports.R |only move-2.1.0/move/R/extractDBMvar.R |only move-2.1.0/move/R/time.R |only move-2.1.0/move/inst/extdata/move.RData |only move-2.1.0/move/man/dynBGB.Rd |only move-2.1.0/move/man/time.Rd |only move-2.1.0/move/man/time.lag.Rd |only move-2.1.0/move/src/RcppExports.cpp |only move-2.1.0/move/tests/testthat/test.seglength.R |only move-3.0.0/move/ChangeLog | 12 move-3.0.0/move/DESCRIPTION | 24 move-3.0.0/move/MD5 | 288 +++-- move-3.0.0/move/NAMESPACE | 19 move-3.0.0/move/R/AAClass.R | 54 - move-3.0.0/move/R/Summary.R | 20 move-3.0.0/move/R/WebImport.R | 486 ++++++++-- move-3.0.0/move/R/angle.R | 23 move-3.0.0/move/R/brownianbridgedyn.R | 155 ++- move-3.0.0/move/R/brownianmotionvariancedyn.R | 55 + move-3.0.0/move/R/burst.R | 4 move-3.0.0/move/R/corridor.R | 2 move-3.0.0/move/R/dBGB.R | 122 +- move-3.0.0/move/R/data.frame.R | 69 + move-3.0.0/move/R/distance.R | 33 move-3.0.0/move/R/emd.R | 24 move-3.0.0/move/R/getDataRepositoryData.R |only move-3.0.0/move/R/getDuplicatedTimestamps.R |only move-3.0.0/move/R/getMotionVariance.R | 6 move-3.0.0/move/R/hrBootstrap.R | 4 move-3.0.0/move/R/licenseTerms.R |only move-3.0.0/move/R/lineMidpoint.R | 2 move-3.0.0/move/R/move.R | 127 +- move-3.0.0/move/R/moveStack.R | 139 ++ move-3.0.0/move/R/print.R | 14 move-3.0.0/move/R/seglength.R | 1 move-3.0.0/move/R/speed.R | 21 move-3.0.0/move/R/subset.R | 28 move-3.0.0/move/R/timelag.R | 22 move-3.0.0/move/R/timestamps.R | 1 move-3.0.0/move/R/unUsedRecords.R | 2 move-3.0.0/move/build/vignette.rds |binary move-3.0.0/move/data/datalist | 2 move-3.0.0/move/data/duplicatedDataExample.RData |only move-3.0.0/move/data/leroydbgb.RData |only move-3.0.0/move/inst/doc/browseMovebank.R | 139 ++ move-3.0.0/move/inst/doc/browseMovebank.Rnw | 203 +++- move-3.0.0/move/inst/doc/browseMovebank.pdf |binary move-3.0.0/move/inst/doc/move.R | 55 - move-3.0.0/move/inst/doc/move.Rnw | 8 move-3.0.0/move/inst/doc/move.pdf |binary move-3.0.0/move/inst/extdata/createsRDataFile.R | 3 move-3.0.0/move/inst/extdata/fishersSubset.csv.gz |only move-3.0.0/move/man/DBBMM-class.Rd | 26 move-3.0.0/move/man/DBBMMBurstStack-class.Rd |only move-3.0.0/move/man/DBBMMStack-class.Rd | 28 move-3.0.0/move/man/Move-class.Rd | 74 + move-3.0.0/move/man/MoveBurst-class.Rd | 75 + move-3.0.0/move/man/MoveStack-class.Rd | 74 + move-3.0.0/move/man/MovebankLogin-class.Rd | 21 move-3.0.0/move/man/UD-class.Rd | 38 move-3.0.0/move/man/UDStack.Rd | 23 move-3.0.0/move/man/angle.Rd | 39 move-3.0.0/move/man/as.data.frame.Rd | 57 - move-3.0.0/move/man/brownian.bridge.dyn.Rd | 73 + move-3.0.0/move/man/brownian.motion.variance.dyn.Rd | 19 move-3.0.0/move/man/burst.Rd | 21 move-3.0.0/move/man/burstId.Rd | 19 move-3.0.0/move/man/citations.Rd | 15 move-3.0.0/move/man/contour.Rd | 17 move-3.0.0/move/man/coordinates.Rd | 14 move-3.0.0/move/man/corridor.Rd | 33 move-3.0.0/move/man/dBGBvariance-class.Rd | 39 move-3.0.0/move/man/dBMvarianceTmp-class.Rd | 45 move-3.0.0/move/man/distance.Rd | 42 move-3.0.0/move/man/duplicatedDataExample.Rd |only move-3.0.0/move/man/dynBGB-class.Rd |only move-3.0.0/move/man/dynBGB-methods.Rd | 57 - move-3.0.0/move/man/dynBGBvariance-methods.Rd | 44 move-3.0.0/move/man/emd.Rd | 42 move-3.0.0/move/man/equalProj.Rd | 18 move-3.0.0/move/man/fishers.Rd | 2 move-3.0.0/move/man/getDataRepositoryData.Rd |only move-3.0.0/move/man/getDuplicatedTimestamps.Rd |only move-3.0.0/move/man/getMotionVariance.Rd | 26 move-3.0.0/move/man/getMovebank.Rd | 144 ++ move-3.0.0/move/man/getMovebankAnimals.Rd | 20 move-3.0.0/move/man/getMovebankData.Rd | 73 + move-3.0.0/move/man/getMovebankID.Rd | 19 move-3.0.0/move/man/getMovebankNonLocationData.Rd |only move-3.0.0/move/man/getMovebankSensorAttributes.Rd | 26 move-3.0.0/move/man/getMovebankSensors.Rd | 24 move-3.0.0/move/man/getMovebankStudies.Rd | 16 move-3.0.0/move/man/getMovebankStudy.Rd | 20 move-3.0.0/move/man/getVolumeUD.Rd | 31 move-3.0.0/move/man/hrBootstrap.Rd | 53 - move-3.0.0/move/man/idData.Rd | 23 move-3.0.0/move/man/interpolateTime.Rd | 48 move-3.0.0/move/man/leroydbgb.Rd |only move-3.0.0/move/man/licenseTerms.Rd |only move-3.0.0/move/man/lines.Rd | 24 move-3.0.0/move/man/move-package.Rd | 7 move-3.0.0/move/man/move.Rd | 81 + move-3.0.0/move/man/move2ade.Rd | 16 move-3.0.0/move/man/moveStack.Rd | 34 move-3.0.0/move/man/movebankLogin.Rd | 18 move-3.0.0/move/man/n.indiv.Rd | 12 move-3.0.0/move/man/n.locs.Rd | 14 move-3.0.0/move/man/outerProbability.Rd | 8 move-3.0.0/move/man/plot.Rd | 27 move-3.0.0/move/man/plotBursts.Rd | 42 move-3.0.0/move/man/points.Rd | 25 move-3.0.0/move/man/raster.Rd | 17 move-3.0.0/move/man/raster2contour.Rd | 39 move-3.0.0/move/man/ricky.Rd | 10 move-3.0.0/move/man/searchMovebankStudies.Rd | 14 move-3.0.0/move/man/seglength.Rd | 34 move-3.0.0/move/man/sensor.Rd | 20 move-3.0.0/move/man/show.Rd | 39 move-3.0.0/move/man/spTransform.Rd | 18 move-3.0.0/move/man/speed.Rd | 35 move-3.0.0/move/man/split.Rd | 38 move-3.0.0/move/man/subset.Rd | 40 move-3.0.0/move/man/summary.Rd | 23 move-3.0.0/move/man/timeLag.Rd | 35 move-3.0.0/move/man/timestamps.Rd | 41 move-3.0.0/move/man/trackId.Rd | 10 move-3.0.0/move/man/turnAngleGc.Rd | 30 move-3.0.0/move/man/udData.Rd | 2 move-3.0.0/move/man/unUsedRecords-class.Rd | 25 move-3.0.0/move/man/unUsedRecords.Rd | 38 move-3.0.0/move/src/bgbVarRcpp.cpp | 28 move-3.0.0/move/src/bgb_bbmm.c | 8 move-3.0.0/move/src/emd.cpp | 1 move-3.0.0/move/src/emd.h |only move-3.0.0/move/src/emd_hat_impl.h | 1 move-3.0.0/move/src/init.c |only move-3.0.0/move/tests/testthat/Rplots.pdf |only move-3.0.0/move/tests/testthat/test.angle.R |only move-3.0.0/move/tests/testthat/test.brownian.bridge.dyn.R | 52 - move-3.0.0/move/tests/testthat/test.burst.R | 13 move-3.0.0/move/tests/testthat/test.citations.R | 5 move-3.0.0/move/tests/testthat/test.corridor.R |only move-3.0.0/move/tests/testthat/test.dBGB.R | 43 move-3.0.0/move/tests/testthat/test.emd.R | 245 ++--- move-3.0.0/move/tests/testthat/test.examples.R |only move-3.0.0/move/tests/testthat/test.getDataRepositoryData.R |only move-3.0.0/move/tests/testthat/test.getDuplicatedTimestamps.R |only move-3.0.0/move/tests/testthat/test.getMotionVariance.R | 5 move-3.0.0/move/tests/testthat/test.getVolumeUD.R |only move-3.0.0/move/tests/testthat/test.measures.R | 4 move-3.0.0/move/tests/testthat/test.move.R | 265 ++++- move-3.0.0/move/tests/testthat/test.moveStack.R | 43 move-3.0.0/move/tests/testthat/test.print.R |only move-3.0.0/move/tests/testthat/test.smallFunctions.R | 14 move-3.0.0/move/tests/testthat/test.storedData.R | 2 move-3.0.0/move/tests/testthat/test.subSet.R | 73 + move-3.0.0/move/tests/testthat/test.timestamps.R |only move-3.0.0/move/tests/testthat/test.turnAngle.R | 2 move-3.0.0/move/tests/testthat/test.udFunctions.R |only move-3.0.0/move/tests/testthat/test.unUsed.R | 48 move-3.0.0/move/tests/testthat/test.web.R |only move-3.0.0/move/vignettes/browseMovebank.Rnw | 203 +++- move-3.0.0/move/vignettes/move.Rnw | 8 163 files changed, 3835 insertions(+), 1689 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects at the mean or average marginal effects from
statistical models and returns the result as tidy data frames. These
data frames are ready to use with the 'ggplot2'-package.
Marginal effects can be calculated for many different models. Interaction
terms, splines and polynomial terms are also supported. The two main
functions are 'ggpredict()' and 'ggaverage()', however, there are
some convenient wrapper-functions especially for polynomials or
interactions. There is a generic 'plot()'-method to plot the results
using 'ggplot2'.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between ggeffects versions 0.2.0 dated 2017-07-24 and 0.2.1 dated 2017-08-22
DESCRIPTION | 18 MD5 | 28 NAMESPACE | 7 NEWS.md | 103 +-- R/emm.R | 3 R/ggaverage.R | 324 +++++----- R/ggpredict.R | 47 + R/predictions.R | 1309 ++++++++++++++++++++++-------------------- R/utils_expand_data_to_grid.R | 261 ++++---- R/utils_handle_labels.R | 10 R/utils_model_frame.R | 60 - R/utils_model_function.R | 119 +-- README.md | 260 ++++---- inst/doc/marginaleffects.html | 52 - man/ggpredict.Rd | 38 + 15 files changed, 1416 insertions(+), 1223 deletions(-)
Title: Detection of Differential Item Functioning (DIF) and
Differential Distractor Functioning (DDF) by Non-Linear
Regression Models
Description: Detection of DIF among dichotomously scored items and DDF among unscored items with non-linear regression procedures based on generalized logistic regression models.
Author: Adela Drabinova [aut, cre], Patricia Martinkova [aut], Karel Zvara [aut]
Maintainer: Adela Drabinova <adela.drabinova@gmail.com>
Diff between difNLR versions 1.0.3 dated 2017-06-16 and 1.1.0 dated 2017-08-22
difNLR-1.0.3/difNLR/R/constrNLR.R |only difNLR-1.0.3/difNLR/R/difMedical.R |only difNLR-1.0.3/difNLR/R/difMedicalkey.R |only difNLR-1.0.3/difNLR/R/difMedicaltest.R |only difNLR-1.0.3/difNLR/data/difMedical.rda |only difNLR-1.0.3/difNLR/data/difMedicalkey.rda |only difNLR-1.0.3/difNLR/data/difMedicaltest.rda |only difNLR-1.0.3/difNLR/man/constrNLR.Rd |only difNLR-1.0.3/difNLR/man/difMedical.Rd |only difNLR-1.0.3/difNLR/man/difMedicalkey.Rd |only difNLR-1.0.3/difNLR/man/difMedicaltest.Rd |only difNLR-1.1.0/difNLR/DESCRIPTION | 12 difNLR-1.1.0/difNLR/MD5 | 56 +-- difNLR-1.1.0/difNLR/NAMESPACE | 4 difNLR-1.1.0/difNLR/NEWS | 117 ++++++ difNLR-1.1.0/difNLR/R/MLR.R | 10 difNLR-1.1.0/difNLR/R/MSATB.R |only difNLR-1.1.0/difNLR/R/MSATBkey.R |only difNLR-1.1.0/difNLR/R/MSATBtest.R |only difNLR-1.1.0/difNLR/R/NLR.R | 275 +++++++++------ difNLR-1.1.0/difNLR/R/ddfMLR.R | 222 +++++++++--- difNLR-1.1.0/difNLR/R/difNLR-package.R | 12 difNLR-1.1.0/difNLR/R/difNLR.R | 510 ++++++++++++++++++++-------- difNLR-1.1.0/difNLR/R/formulaNLR.R |only difNLR-1.1.0/difNLR/R/genNLR.R | 2 difNLR-1.1.0/difNLR/R/startNLR.R | 105 ++++- difNLR-1.1.0/difNLR/README.md | 13 difNLR-1.1.0/difNLR/data/MSATB.rda |only difNLR-1.1.0/difNLR/data/MSATBkey.rda |only difNLR-1.1.0/difNLR/data/MSATBtest.rda |only difNLR-1.1.0/difNLR/man/MLR.Rd | 6 difNLR-1.1.0/difNLR/man/MSATB.Rd |only difNLR-1.1.0/difNLR/man/MSATBkey.Rd |only difNLR-1.1.0/difNLR/man/MSATBtest.Rd |only difNLR-1.1.0/difNLR/man/NLR.Rd | 93 +++-- difNLR-1.1.0/difNLR/man/ddfMLR.Rd | 29 + difNLR-1.1.0/difNLR/man/difNLR-package.Rd | 9 difNLR-1.1.0/difNLR/man/difNLR.Rd | 144 +++++-- difNLR-1.1.0/difNLR/man/formulaNLR.Rd |only difNLR-1.1.0/difNLR/man/startNLR.Rd | 42 +- 40 files changed, 1225 insertions(+), 436 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-21 0.3.0
Title: Bayesian Inference for Zero-Inflated Count Models
Description: Provides MCMC algorithms for the analysis of
zero-inflated count models. The case of stochastic search
variable selection (SVS) is also considered. All MCMC samplers
are coded in C++ for improved efficiency. A data set
considering the demand for health care is provided.
Author: Markus Jochmann <markus.jochmann@ncl.ac.uk>
Maintainer: Markus Jochmann <markus.jochmann@ncl.ac.uk>
Diff between zic versions 0.9 dated 2015-09-03 and 0.9.1 dated 2017-08-22
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- NAMESPACE | 2 +- R/zic.R | 4 ++-- src/registerDynamicSymbol.c |only 5 files changed, 11 insertions(+), 10 deletions(-)
Title: Test and Item Analysis via Shiny
Description: Interactive shiny application for analysis of educational tests and
their items.
Author: Patricia Martinkova [aut, cre], Adela Drabinova [aut], Ondrej Leder [aut], Jakub Houdek [aut], Lubomir Stepanek [ctb]
Maintainer: Patricia Martinkova <martinkova@cs.cas.cz>
Diff between ShinyItemAnalysis versions 1.2.0 dated 2017-06-16 and 1.2.3 dated 2017-08-22
ShinyItemAnalysis-1.2.0/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/www/Thumbs.db |only ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/DESCRIPTION | 18 ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/MD5 | 36 ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/NAMESPACE | 2 ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/NEWS | 101 ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/R/DDplot.R | 59 ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/R/gDisrim.R |only ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/README.md | 10 ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/inst/CITATION | 2 ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/DDplot.R | 86 ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/DIF.R |only ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/IRT.R |only ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/Regression.R |only ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/Summary.R |only ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/TraditionalAnalysis.R |only ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/Validity.R |only ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/counter.Rdata |binary ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/gDisrim.R |only ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/reporthtml.Rmd | 182 ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/reportpdf.Rmd | 180 ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/server.R | 4550 ---------- ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/inst/shiny-examples/ShinyItemAnalysis/ui.R | 400 ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/man/DDplot.Rd | 40 ShinyItemAnalysis-1.2.3/ShinyItemAnalysis/man/gDiscrim.Rd |only 24 files changed, 1202 insertions(+), 4464 deletions(-)
More information about ShinyItemAnalysis at CRAN
Permanent link
Title: Blind Source Separation Methods for Tensor-Valued Observations
Description: Contains several utility functions for manipulating tensor-valued data (centering, multiplication from a single mode etc.) and the implementations of the following blind source separation methods for tensor-valued data: 'tPCA', 'tFOBI', 'tJADE', 'tgFOBI', 'tgJADE', 'tSOBI', 'tNSS.SD', 'tNSS.JD' and 'tNSS.TD.JD'.
Author: Joni Virta, Bing Li, Klaus Nordhausen, Hannu Oja
Maintainer: Joni Virta <jomivi@utu.fi>
Diff between tensorBSS versions 0.3 dated 2017-05-18 and 0.3.1 dated 2017-08-22
DESCRIPTION | 8 +-- MD5 | 42 ++++++++++---------- NAMESPACE | 2 R/RcppExports.R | 22 ++++++---- R/mModeTFOBIMatrix.R | 9 +++- R/tFOBI.R | 8 ++- R/tFOBIRotate.R | 4 - R/tMD.R |only inst/ChangeLog | 17 +++++--- man/tFOBI.Rd | 6 ++ man/tGFOBI.Rd | 2 man/tGJADE.Rd | 2 man/tMD.Rd |only man/tNSS.JD.Rd | 2 man/tNSS.SD.Rd | 96 +++++++++++++++++++++++++++++++++++++++-------- man/tNSS.TD.JD.Rd | 2 man/tPCA.Rd | 2 man/tSOBI.Rd | 2 man/tensorBSS-package.Rd | 4 - src/RcppExports.cpp | 11 +++++ src/tensorBSS.cpp | 23 +++++++++++ src/tensorBSS.h | 1 src/tensorBSS_init.c | 2 23 files changed, 197 insertions(+), 70 deletions(-)
Title: Quantile Regression in Varying-Coefficient Models
Description: Quantile regression in varying-coefficient models (VCM) using one particular nonparametric technique called P-splines. The functions can be applied on three types of VCM; (1) Homoscedastic VCM, (2) Simple heteroscedastic VCM, and (3) General heteroscedastic VCM.
Author: 'Andriyana, Y.' [aut, cre], 'Ibrahim M. A.' [aut], 'Gijbels, I.' [ctb], 'Verhasselt A.' [ctb]
Maintainer: "Andriyana.Y" <y.andriyana@unpad.ac.id>
Diff between QRegVCM versions 1.0 dated 2016-07-19 and 1.1 dated 2017-08-22
DESCRIPTION | 10 +++++----- MD5 | 17 +++++++++++++++-- NAMESPACE | 1 + R/D_CD4.R |only R/F_Lamb_m23.R |only R/F_Lamb_m45.R |only R/F_TestVar.R |only R/F_intpoint_m23.R |only R/F_intpoint_m45.R |only R/F_lambdak_m23.R |only R/F_lambdak_m45.R |only R/F_qrvcp_m23.R |only R/F_qrvcp_m45.R |only data |only man/CD4.Rd |only man/test_variability.Rd |only 16 files changed, 21 insertions(+), 7 deletions(-)
Title: Simple Data Frames
Description: Provides a 'tbl_df' class (the 'tibble') that provides
stricter checking and better formatting than the traditional data frame.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
Romain Francois [ctb],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between tibble versions 1.3.3 dated 2017-05-28 and 1.3.4 dated 2017-08-22
DESCRIPTION | 6 +- MD5 | 63 +++++++++++------------ NEWS.md | 19 ++++++ R/RcppExports.R | 2 R/add.R | 16 +++-- R/as_tibble.R | 6 +- R/glimpse.R | 17 ++---- R/lst.R | 27 ++++++++- R/tibble.R | 10 ++- R/type-sum.r | 14 ++--- R/utils-format.r | 12 +++- build/vignette.rds |binary inst/doc/extending.html | 40 +++++++------- inst/doc/tibble.R | 10 +++ inst/doc/tibble.Rmd | 21 ++++++- inst/doc/tibble.html | 62 +++++++++++++++++----- man/as_tibble.Rd | 5 + man/obj_sum.Rd | 6 +- src/RcppExports.cpp | 4 - tests/testthat/output/glimpse/all-35.txt | 2 tests/testthat/output/glimpse/all-50.txt | 2 tests/testthat/output/glimpse/all-70.txt | 2 tests/testthat/output/glimpse/non-syntactic.txt |only tests/testthat/output/trunc_mat/all--300.txt | 2 tests/testthat/output/trunc_mat/all-knit-120.txt | 2 tests/testthat/output/trunc_mat/all-knit-60.txt | 2 tests/testthat/output/trunc_mat/newline.txt | 10 +-- tests/testthat/test-add.R | 16 +++++ tests/testthat/test-data-frame.R | 43 +++++++++++++++ tests/testthat/test-glimpse.R | 7 +- tests/testthat/test-lst.R | 5 + tests/testthat/test-trunc-mat.R | 2 vignettes/tibble.Rmd | 21 ++++++- 33 files changed, 326 insertions(+), 130 deletions(-)
Title: Odds Ratio Estimation and Power Calculation for the Trend in
Trend Model
Description: Estimation of causal odds ratio and power calculation given trends in exposure prevalence and outcome frequencies of stratified data.
Author: Xinyao Ji and Ashkan Ertefaie
Maintainer: Ashkan Ertefaie <ashkan_ertefaie@urmc.rochester.edu>
Diff between TrendInTrend versions 1.0.1 dated 2017-01-09 and 1.0.2 dated 2017-08-22
DESCRIPTION | 23 +-- MD5 | 12 + NAMESPACE | 7 + R/TrendInTrend.R | 346 ++++++++++++++++++++++++++++++++++++++++++++++++++++++- man/GenData.Rd | 1 man/OR.Rd | 6 man/ttdetect.Rd |only man/ttpower.Rd |only 8 files changed, 373 insertions(+), 22 deletions(-)
Title: 'ggplot2' Based Publication Ready Plots
Description: 'ggplot2' is an excellent and flexible package for elegant data
visualization in R. However the default generated plots requires some formatting
before we can send them for publication. Furthermore, to customize a 'ggplot',
the syntax is opaque and this raises the level of difficulty for researchers
with no advanced R programming skills. 'ggpubr' provides some easy-to-use
functions for creating and customizing 'ggplot2'- based publication ready plots.
Author: Alboukadel Kassambara [aut, cre]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between ggpubr versions 0.1.4 dated 2017-06-28 and 0.1.5 dated 2017-08-22
DESCRIPTION | 12 ++++----- MD5 | 60 ++++++++++++++++++++++++------------------------- NAMESPACE | 2 + NEWS.md | 33 ++++++++++++++++++++++++++ R/axis_scale.R | 1 R/compare_means.R | 1 R/ggbarplot.R | 19 ++++++++++++--- R/ggboxplot.R | 4 ++- R/ggdensity.R | 4 ++- R/ggdotchart.R | 4 ++- R/ggdotplot.R | 4 ++- R/ggecdf.R | 4 ++- R/ggerrorplot.R | 4 ++- R/gghistogram.R | 4 ++- R/ggline.R | 14 +++++++---- R/ggpar.R | 13 +++++++--- R/ggparagraph.R | 6 ++++ R/ggpie.R | 18 ++++++++------ R/ggqqplot.R | 4 ++- R/ggscatter.R | 53 +++++++++++++++++++++++++++++++------------ R/ggstripchart.R | 4 ++- R/ggtexttable.R | 33 ++++++++++++++++++++++---- R/ggviolin.R | 4 ++- R/stat_compare_means.R | 8 +++--- R/utilities.R | 15 +++++++----- man/axis_scale.Rd | 3 +- man/ggpar.Rd | 20 +++++++++------- man/ggparagraph.Rd | 8 ++++++ man/ggpie.Rd | 7 ++++- man/ggscatter.Rd | 19 ++++++++++++--- man/ggtexttable.Rd | 25 +++++++++++++++++--- 31 files changed, 294 insertions(+), 116 deletions(-)
Title: Calculate Generalized Eigenvalues, the Generalized Schur
Decomposition and the Generalized Singular Value Decomposition
of a Matrix Pair with Lapack
Description: Functions to compute generalized eigenvalues and eigenvectors,
the generalized Schur decomposition and
the generalized Singular Value Decomposition of a matrix pair,
using Lapack routines.
Author: Berend Hasselman [cre, aut],
Lapack authors [aut, cph]
Maintainer: Berend Hasselman <bhh@xs4all.nl>
Diff between geigen versions 2.0 dated 2017-02-16 and 2.1 dated 2017-08-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 5 +++++ man/geigen.Rd | 19 ++++++++++++++++++- man/gqz.Rd | 1 - 5 files changed, 31 insertions(+), 10 deletions(-)
Title: Best Subset Selection for Sparse Generalized Linear Model and
Cox Model
Description: An implementation of best subset selection in generalized linear model and Cox proportional hazard model via the primal dual active set algorithm. The algorithm formulates coefficient parameters and residuals as primal and dual variables and utilizes efficient active set selection strategies based on the complementarity of the primal and dual variables.
Author: Canhong Wen, Aijun Zhang, Shijie Quan, Xueqin Wang
Maintainer: Canhong Wen <wencanhong@gmail.com>
Diff between BeSS versions 1.0.2 dated 2017-06-29 and 1.0.3 dated 2017-08-22
BeSS-1.0.2/BeSS/man/summary.bess.Rd |only BeSS-1.0.3/BeSS/DESCRIPTION | 10 +++++----- BeSS-1.0.3/BeSS/MD5 | 32 +++++++++++++++++++++----------- BeSS-1.0.3/BeSS/NAMESPACE | 13 +++++++++---- BeSS-1.0.3/BeSS/R/RcppExports.R | 6 +++--- BeSS-1.0.3/BeSS/R/aic.R |only BeSS-1.0.3/BeSS/R/bess.R | 28 +++++++++++++++++++++------- BeSS-1.0.3/BeSS/R/bess.cox.R | 13 +++++++++---- BeSS-1.0.3/BeSS/R/bess.glm.R | 12 ++++++++---- BeSS-1.0.3/BeSS/R/bess.lm.R | 15 +++++++++++---- BeSS-1.0.3/BeSS/R/deviance.bess.R |only BeSS-1.0.3/BeSS/R/logLik.bess.R |only BeSS-1.0.3/BeSS/R/print.bess.R |only BeSS-1.0.3/BeSS/README |only BeSS-1.0.3/BeSS/data |only BeSS-1.0.3/BeSS/man/aic.Rd |only BeSS-1.0.3/BeSS/man/bess.Rd | 22 ++++++++++++++-------- BeSS-1.0.3/BeSS/man/bess.one.Rd | 7 +++++++ BeSS-1.0.3/BeSS/man/deviance.bess.Rd |only BeSS-1.0.3/BeSS/man/gravier.Rd |only BeSS-1.0.3/BeSS/man/logLik.bess.Rd |only BeSS-1.0.3/BeSS/man/print.bess.Rd |only BeSS-1.0.3/BeSS/src/RcppExports.cpp | 18 +++++++++++++++--- 23 files changed, 123 insertions(+), 53 deletions(-)